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[1][TOP]
>UniRef100_B2B9K0 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B2B9K0_GOSHI
Length = 1110
Score = 165 bits (418), Expect(2) = 1e-43
Identities = 78/134 (58%), Positives = 100/134 (74%)
Frame = +3
Query: 99 AKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSAL 278
+KHLLIQL GAPRIY+ P S V++DP +NY D PD+QW+R DFT + IGQSS L
Sbjct: 165 SKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVL 224
Query: 279 CLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFK 458
CLELP +PNFRENFAYY+E+ R +E+G +S NL LVPIV P + I++P++ILFK
Sbjct: 225 CLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFK 284
Query: 459 VNSLVQHGCLAGPS 500
VN LVQ+GC+ GP+
Sbjct: 285 VNLLVQNGCIPGPA 298
Score = 34.7 bits (78), Expect(2) = 1e-43
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1
Query: 7 ISFCPITVRYKLELSYENIWKLELHQP 87
+S+C + +YKLEL YENIW++EL P
Sbjct: 136 LSYC--SSKYKLELFYENIWQIELRCP 160
[2][TOP]
>UniRef100_B3SND7 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B3SND7_GOSHI
Length = 1110
Score = 161 bits (407), Expect(2) = 3e-42
Identities = 77/134 (57%), Positives = 99/134 (73%)
Frame = +3
Query: 99 AKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSAL 278
+KHLLIQL GAPRIY+ P S V++DP +NY D PD+QW+R DFT + IGQSS L
Sbjct: 165 SKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVL 224
Query: 279 CLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFK 458
LELP +PNFRENFAYY+E+ R +E+G +S NL LVPIV P + I++P++ILFK
Sbjct: 225 WLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFK 284
Query: 459 VNSLVQHGCLAGPS 500
VN LVQ+GC+ GP+
Sbjct: 285 VNLLVQNGCIPGPA 298
Score = 34.7 bits (78), Expect(2) = 3e-42
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1
Query: 7 ISFCPITVRYKLELSYENIWKLELHQP 87
+S+C + +YKLEL YENIW++EL P
Sbjct: 136 LSYC--SSKYKLELFYENIWQIELRCP 160
[3][TOP]
>UniRef100_B9HJH7 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH7_POPTR
Length = 1133
Score = 168 bits (426), Expect = 2e-40
Identities = 85/164 (51%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Frame = +3
Query: 6 HFILSDNSQIQT*AFI*KHL-EVRAASTTGWNAKHLLIQLLGAPRIYKLNNPTSGNVYED 182
HF LS N + +++ ++ G K+LLIQL GAPRIY+ + P+S NV+ED
Sbjct: 134 HFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFED 193
Query: 183 PSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCT 362
P +NY D PDEQW+R DFTP IG SS+LCLELP+ +PNF ENF YY+E+
Sbjct: 194 PLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFV 253
Query: 363 VETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCLAG 494
+E+GL FS N LVPIV P G+ +PY+ILF+VN LVQ+GCLAG
Sbjct: 254 LESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297
[4][TOP]
>UniRef100_UPI000198295F PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI000198295F
Length = 1109
Score = 155 bits (391), Expect = 2e-36
Identities = 76/145 (52%), Positives = 102/145 (70%)
Frame = +3
Query: 66 EVRAASTTGWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFT 245
+++ G N K LLIQLL AP+IY+ + +++Y +TPD+QW+R +DFT
Sbjct: 154 QIQLREPRGQNTKFLLIQLLDAPQIYEK---------DVSALSYFKETPDDQWVREIDFT 204
Query: 246 PFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQ 425
P IGQSSALCLELP G +PNF ENFA Y+E+ R+ +E+G FS NL LVPIV PPQ
Sbjct: 205 PSCSIGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQ 264
Query: 426 GIEIPYDILFKVNSLVQHGCLAGPS 500
G +P+ ILFK+N+LVQ+GCL+GP+
Sbjct: 265 GSNLPFKILFKINTLVQNGCLSGPT 289
[5][TOP]
>UniRef100_A7P3W3 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W3_VITVI
Length = 1076
Score = 155 bits (391), Expect = 2e-36
Identities = 76/145 (52%), Positives = 102/145 (70%)
Frame = +3
Query: 66 EVRAASTTGWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFT 245
+++ G N K LLIQLL AP+IY+ + +++Y +TPD+QW+R +DFT
Sbjct: 121 QIQLREPRGQNTKFLLIQLLDAPQIYEK---------DVSALSYFKETPDDQWVREIDFT 171
Query: 246 PFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQ 425
P IGQSSALCLELP G +PNF ENFA Y+E+ R+ +E+G FS NL LVPIV PPQ
Sbjct: 172 PSCSIGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQ 231
Query: 426 GIEIPYDILFKVNSLVQHGCLAGPS 500
G +P+ ILFK+N+LVQ+GCL+GP+
Sbjct: 232 GSNLPFKILFKINTLVQNGCLSGPT 256
[6][TOP]
>UniRef100_Q9ZRY7 RNA-directed RNA polymerase n=1 Tax=Nicotiana tabacum
RepID=Q9ZRY7_TOBAC
Length = 1116
Score = 137 bits (344), Expect(2) = 1e-35
Identities = 72/137 (52%), Positives = 93/137 (67%), Gaps = 2/137 (1%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G NA+ LL+QL GAPRIYK ED ++ +TPD+QW+R DFTP S IG S
Sbjct: 160 GQNAQFLLLQLFGAPRIYKR--------LEDSCYSFFKETPDDQWVRTTDFTP-SWIGLS 210
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLN--LRLVPIVAPPQGIEIPY 443
S+LCLE +G +PNF E+F YY+ES + ++TG FS + L LVPIV P+GIE+PY
Sbjct: 211 SSLCLEFRNGVQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPY 270
Query: 444 DILFKVNSLVQHGCLAG 494
ILFK++SL+QHGC G
Sbjct: 271 KILFKISSLIQHGCFPG 287
Score = 36.6 bits (83), Expect(2) = 1e-35
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 34 YKLELSYENIWKLELHQPRG 93
YKL+LSYENIW++ LH+P G
Sbjct: 141 YKLQLSYENIWQVVLHRPYG 160
[7][TOP]
>UniRef100_C1I213 RNA-dependent RNA polymerase n=1 Tax=Nicotiana glutinosa
RepID=C1I213_NICGU
Length = 1117
Score = 135 bits (341), Expect(2) = 3e-35
Identities = 72/138 (52%), Positives = 93/138 (67%), Gaps = 3/138 (2%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G A+ LL+QL GAPRIYK ED ++ +TPD+QW+R DFTP S IG S
Sbjct: 160 GQKAQFLLLQLSGAPRIYKR--------LEDSCYSFFKETPDDQWVRTTDFTP-SWIGLS 210
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLN---LRLVPIVAPPQGIEIP 440
S+LCLE +G +PNF E+F YY+ESA + ++TG FS + L LVPIV P+GIE+P
Sbjct: 211 SSLCLEFHNGVRLPNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELP 270
Query: 441 YDILFKVNSLVQHGCLAG 494
Y ILFK++SL+QHGC G
Sbjct: 271 YKILFKISSLIQHGCFPG 288
Score = 36.6 bits (83), Expect(2) = 3e-35
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 34 YKLELSYENIWKLELHQPRG 93
YKL+LSYENIW++ LH+P G
Sbjct: 141 YKLQLSYENIWQVVLHRPYG 160
[8][TOP]
>UniRef100_A7P3W5 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W5_VITVI
Length = 1121
Score = 150 bits (378), Expect = 6e-35
Identities = 74/145 (51%), Positives = 99/145 (68%)
Frame = +3
Query: 66 EVRAASTTGWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFT 245
+++ G K LLIQLLGAP+IY+ + P Y + PD+QW+R +DFT
Sbjct: 155 QIQLQHPRGQITKFLLIQLLGAPQIYEKDVPVLSY--------YFKEAPDDQWVREIDFT 206
Query: 246 PFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQ 425
P IGQS ALCLELP G +PNFRENFAYY+E+ + +E+G +S NL LVPI+ PPQ
Sbjct: 207 PSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQ 266
Query: 426 GIEIPYDILFKVNSLVQHGCLAGPS 500
G +P+ ILFK+N+LVQ+GCL+GP+
Sbjct: 267 GSSLPFQILFKINTLVQNGCLSGPT 291
[9][TOP]
>UniRef100_A4UV17 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV17_SOLTU
Length = 1115
Score = 133 bits (334), Expect(2) = 2e-34
Identities = 70/139 (50%), Positives = 93/139 (66%), Gaps = 2/139 (1%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G NA+ LLIQL GAPRIYK E+ ++ +TPD+QW+R DFTP S IG S
Sbjct: 160 GQNAQFLLIQLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFTP-SWIGLS 210
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPY 443
S+LCL+ G +PNF+E+F +Y E T++TG F ++ + LVP V PP+GI IPY
Sbjct: 211 SSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPY 270
Query: 444 DILFKVNSLVQHGCLAGPS 500
ILFK++SLVQHGC+ GP+
Sbjct: 271 KILFKISSLVQHGCIPGPA 289
Score = 36.6 bits (83), Expect(2) = 2e-34
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 34 YKLELSYENIWKLELHQPRG 93
YKL+LSYENIW++ LH+P G
Sbjct: 141 YKLQLSYENIWQVVLHRPYG 160
[10][TOP]
>UniRef100_A4UV18 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV18_SOLTU
Length = 935
Score = 133 bits (334), Expect(2) = 2e-34
Identities = 70/139 (50%), Positives = 93/139 (66%), Gaps = 2/139 (1%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G NA+ LLIQL GAPRIYK E+ ++ +TPD+QW+R DFTP S IG S
Sbjct: 160 GQNAQFLLIQLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFTP-SWIGLS 210
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPY 443
S+LCL+ G +PNF+E+F +Y E T++TG F ++ + LVP V PP+GI IPY
Sbjct: 211 SSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPY 270
Query: 444 DILFKVNSLVQHGCLAGPS 500
ILFK++SLVQHGC+ GP+
Sbjct: 271 KILFKISSLVQHGCIPGPA 289
Score = 36.6 bits (83), Expect(2) = 2e-34
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 34 YKLELSYENIWKLELHQPRG 93
YKL+LSYENIW++ LH+P G
Sbjct: 141 YKLQLSYENIWQVVLHRPYG 160
[11][TOP]
>UniRef100_B9HVU2 Rna-dependent RNA polymerase (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9HVU2_POPTR
Length = 1102
Score = 129 bits (324), Expect(2) = 2e-34
Identities = 68/137 (49%), Positives = 85/137 (62%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G K+LL+Q+LG P+I+K + N E D+QWIR VDF+P IGQS
Sbjct: 167 GKTKKYLLVQMLGGPKIFKKDTSKLSNFKE---------ATDDQWIRDVDFSPSYCIGQS 217
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDI 449
SALCLELP +PNF+ENF Y+E +E G F LVPI++ Q E+PYDI
Sbjct: 218 SALCLELPPNSQLPNFQENFVCYKEDEGHFILEKGSTFCCKSDLVPILSAAQVSELPYDI 277
Query: 450 LFKVNSLVQHGCLAGPS 500
+FKVNSLVQHGCL GP+
Sbjct: 278 VFKVNSLVQHGCLPGPA 294
Score = 40.0 bits (92), Expect(2) = 2e-34
Identities = 16/24 (66%), Positives = 22/24 (91%)
Frame = +1
Query: 22 ITVRYKLELSYENIWKLELHQPRG 93
++ YKLELSYENI+++ELH+PRG
Sbjct: 144 LSKNYKLELSYENIFQIELHRPRG 167
[12][TOP]
>UniRef100_A4UV46 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV46_SOLTU
Length = 1065
Score = 132 bits (333), Expect(2) = 2e-34
Identities = 70/139 (50%), Positives = 92/139 (66%), Gaps = 2/139 (1%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G NA+ LLIQL GAPRIYK E+ ++ +TPD+QW+R DF P S IG S
Sbjct: 159 GQNAQFLLIQLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAP-SWIGLS 209
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPY 443
S+LCL+ G +PNF+E+F +Y E T++TG F ++ + LVP V PP+GI IPY
Sbjct: 210 SSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPY 269
Query: 444 DILFKVNSLVQHGCLAGPS 500
ILFK++SLVQHGC+ GPS
Sbjct: 270 KILFKISSLVQHGCIPGPS 288
Score = 36.6 bits (83), Expect(2) = 2e-34
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 34 YKLELSYENIWKLELHQPRG 93
YKL+LSYENIW++ LH+P G
Sbjct: 140 YKLQLSYENIWQVVLHRPYG 159
[13][TOP]
>UniRef100_A4UV44 Putative RNA-dependent RNA-polymerase (Fragment) n=1 Tax=Solanum
tuberosum RepID=A4UV44_SOLTU
Length = 841
Score = 131 bits (329), Expect(2) = 7e-34
Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 2/139 (1%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G NA+ LLIQL GAPRIYK E+ ++ +TPD+QW+R DF P S IG S
Sbjct: 160 GQNAQFLLIQLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAP-SWIGLS 210
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPY 443
S+LCL+ G +PNF+E+F +Y E T++TG F ++ + LVP V PP+GI IPY
Sbjct: 211 SSLCLQFRRGVHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPY 270
Query: 444 DILFKVNSLVQHGCLAGPS 500
ILFK++SLVQHGC+ GP+
Sbjct: 271 KILFKISSLVQHGCIPGPA 289
Score = 36.6 bits (83), Expect(2) = 7e-34
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 34 YKLELSYENIWKLELHQPRG 93
YKL+LSYENIW++ LH+P G
Sbjct: 141 YKLQLSYENIWQVVLHRPYG 160
[14][TOP]
>UniRef100_Q9ZR58 RNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum
RepID=Q9ZR58_SOLLC
Length = 1114
Score = 130 bits (328), Expect(2) = 8e-34
Identities = 69/139 (49%), Positives = 91/139 (65%), Gaps = 2/139 (1%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G NA+ LLIQL GAPRIYK E+ ++ +TPD+QW+R DF P S IG S
Sbjct: 160 GQNAQFLLIQLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFPP-SWIGLS 210
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPY 443
S+LCL+ G +PNF E+F +Y E T++TG F ++ + LVP V PP+GI IPY
Sbjct: 211 SSLCLQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPY 270
Query: 444 DILFKVNSLVQHGCLAGPS 500
ILFK++SLVQHGC+ GP+
Sbjct: 271 KILFKISSLVQHGCIPGPA 289
Score = 36.6 bits (83), Expect(2) = 8e-34
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 34 YKLELSYENIWKLELHQPRG 93
YKL+LSYENIW++ LH+P G
Sbjct: 141 YKLQLSYENIWQVVLHRPYG 160
[15][TOP]
>UniRef100_C5XZ94 Putative uncharacterized protein Sb04g028630 n=1 Tax=Sorghum
bicolor RepID=C5XZ94_SORBI
Length = 1114
Score = 126 bits (317), Expect(2) = 5e-33
Identities = 65/133 (48%), Positives = 82/133 (61%)
Frame = +3
Query: 102 KHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALC 281
K LLIQ+ AP+IY+L G +YEDP N+ MD DEQW R +DFTP IGQSS C
Sbjct: 173 KFLLIQVQAAPKIYELLPRRPGLMYEDPFFNWFMDDTDEQWTRTIDFTPSVSIGQSSIFC 232
Query: 282 LELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKV 461
LE+P +P + F YY+E G +S LVPIV P IE+PY+ILFK+
Sbjct: 233 LEVPQQCELPRIGDYFVYYKERNLDFECRNGYSYSCGNCLVPIVKSPDYIEVPYEILFKI 292
Query: 462 NSLVQHGCLAGPS 500
N LVQ+G L+GP+
Sbjct: 293 NHLVQNGTLSGPT 305
Score = 38.1 bits (87), Expect(2) = 5e-33
Identities = 13/20 (65%), Positives = 20/20 (100%)
Frame = +1
Query: 28 VRYKLELSYENIWKLELHQP 87
++YKLELSYE+IW+++LH+P
Sbjct: 146 IKYKLELSYESIWEIQLHRP 165
[16][TOP]
>UniRef100_B9HJH5 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH5_POPTR
Length = 1139
Score = 118 bits (295), Expect(2) = 1e-32
Identities = 66/137 (48%), Positives = 82/137 (59%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G K L++Q+LGA +I K + D+QW+R VDF+P IGQS
Sbjct: 193 GQAKKFLIVQMLGAAKILKKDT-------------------DDQWVRDVDFSPSYCIGQS 233
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDI 449
SALCLELP +PNF+ENF Y+E R +E G F LVPI+ QGIE+PYDI
Sbjct: 234 SALCLELPRSGQLPNFQENFPCYKEDEGRFFLEVGSTFCRVSDLVPILREAQGIELPYDI 293
Query: 450 LFKVNSLVQHGCLAGPS 500
+FKVNSLVQHG L GP+
Sbjct: 294 VFKVNSLVQHGYLPGPA 310
Score = 45.4 bits (106), Expect(2) = 1e-32
Identities = 17/24 (70%), Positives = 23/24 (95%)
Frame = +1
Query: 22 ITVRYKLELSYENIWKLELHQPRG 93
++ +YKLELSYENIW++ELH+PRG
Sbjct: 170 LSTKYKLELSYENIWQIELHRPRG 193
[17][TOP]
>UniRef100_Q9LQV2 F10B6.19 n=1 Tax=Arabidopsis thaliana RepID=Q9LQV2_ARATH
Length = 1107
Score = 123 bits (309), Expect(2) = 2e-32
Identities = 67/142 (47%), Positives = 94/142 (66%), Gaps = 2/142 (1%)
Frame = +3
Query: 81 STTGWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRI 260
S G ++K L+IQ++GAP+I++ + ++ M++ D DEQWIR DFT S I
Sbjct: 160 SPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCI 217
Query: 261 GQSSALCLELPDGQCVPNFRENFA-YYEESARRCTVETGLPFSLNLR-LVPIVAPPQGIE 434
GQS+A CLELP VP+FRENFA Y E A +E+G +S N LVP+V PP G
Sbjct: 218 GQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFS 277
Query: 435 IPYDILFKVNSLVQHGCLAGPS 500
+P++ILFK+N+LVQ+ CL+GP+
Sbjct: 278 LPFEILFKLNTLVQNACLSGPA 299
Score = 39.3 bits (90), Expect(2) = 2e-32
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = +1
Query: 34 YKLELSYENIWKLELHQPRG 93
Y+LELSYENIW+++LH P+G
Sbjct: 144 YRLELSYENIWQIDLHSPQG 163
[18][TOP]
>UniRef100_Q8H1K9 RNA-dependent RNA polymerase 1 n=1 Tax=Arabidopsis thaliana
RepID=Q8H1K9_ARATH
Length = 1107
Score = 123 bits (309), Expect(2) = 2e-32
Identities = 67/142 (47%), Positives = 94/142 (66%), Gaps = 2/142 (1%)
Frame = +3
Query: 81 STTGWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRI 260
S G ++K L+IQ++GAP+I++ + ++ M++ D DEQWIR DFT S I
Sbjct: 160 SPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCI 217
Query: 261 GQSSALCLELPDGQCVPNFRENFA-YYEESARRCTVETGLPFSLNLR-LVPIVAPPQGIE 434
GQS+A CLELP VP+FRENFA Y E A +E+G +S N LVP+V PP G
Sbjct: 218 GQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFS 277
Query: 435 IPYDILFKVNSLVQHGCLAGPS 500
+P++ILFK+N+LVQ+ CL+GP+
Sbjct: 278 LPFEILFKLNTLVQNACLSGPA 299
Score = 39.3 bits (90), Expect(2) = 2e-32
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = +1
Query: 34 YKLELSYENIWKLELHQPRG 93
Y+LELSYENIW+++LH P+G
Sbjct: 144 YRLELSYENIWQIDLHSPQG 163
[19][TOP]
>UniRef100_Q6L447 RNA-directed RNA polymerase-like, putative n=1 Tax=Solanum demissum
RepID=Q6L447_SOLDE
Length = 1137
Score = 133 bits (334), Expect = 7e-30
Identities = 70/139 (50%), Positives = 93/139 (66%), Gaps = 2/139 (1%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G NA+ LLIQL GAPRIYK E+ ++ +TPD+QW+R DFTP S IG S
Sbjct: 196 GQNAQFLLIQLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFTP-SWIGLS 246
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPY 443
S+LCL+ G +PNF+E+F +Y E T++TG F ++ + LVP V PP+GI IPY
Sbjct: 247 SSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPY 306
Query: 444 DILFKVNSLVQHGCLAGPS 500
ILFK++SLVQHGC+ GP+
Sbjct: 307 KILFKISSLVQHGCIPGPA 325
[20][TOP]
>UniRef100_A4UBI7 Putative RNA-directed RNA polymerase 1 n=1 Tax=Nicotiana attenuata
RepID=A4UBI7_9SOLA
Length = 1044
Score = 118 bits (296), Expect(2) = 1e-29
Identities = 65/136 (47%), Positives = 85/136 (62%), Gaps = 1/136 (0%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G A+ LL+QL GAPRI+K ED ++ +TPD+QW+R DFTP S IG S
Sbjct: 160 GQKAQFLLLQLFGAPRIHKR--------LEDSCNSFFKETPDDQWVRTTDFTP-SWIGLS 210
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVET-GLPFSLNLRLVPIVAPPQGIEIPYD 446
S+LCLE +G +PNF +F YY+ES + F L LVPIV P+G+E+PY
Sbjct: 211 SSLCLEFHNGVRLPNFSGSFFYYKESGPSYFTDWFTFSFVQKLSLVPIVHLPEGVELPYK 270
Query: 447 ILFKVNSLVQHGCLAG 494
ILFK++SL+QHGC G
Sbjct: 271 ILFKISSLIQHGCFPG 286
Score = 35.0 bits (79), Expect(2) = 1e-29
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 34 YKLELSYENIWKLELHQPRG 93
YKL+LSYENIW++ LH P G
Sbjct: 141 YKLQLSYENIWQVVLHCPYG 160
[21][TOP]
>UniRef100_Q6L3W8 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3W8_SOLDE
Length = 1139
Score = 131 bits (329), Expect = 3e-29
Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 2/139 (1%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G NA+ LLIQL GAPRIYK E+ ++ +TPD+QW+R DF P S IG S
Sbjct: 152 GQNAQFLLIQLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAP-SWIGLS 202
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPY 443
S+LCL+ G +PNF+E+F +Y E T++TG F ++ + LVP V PP+GI IPY
Sbjct: 203 SSLCLQFRRGVHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPY 262
Query: 444 DILFKVNSLVQHGCLAGPS 500
ILFK++SLVQHGC+ GP+
Sbjct: 263 KILFKISSLVQHGCIPGPA 281
[22][TOP]
>UniRef100_B5M059 RNA-directed RNA polymerase 1a (Fragment) n=1 Tax=Hordeum vulgare
RepID=B5M059_HORVU
Length = 1114
Score = 131 bits (329), Expect = 3e-29
Identities = 67/145 (46%), Positives = 89/145 (61%)
Frame = +3
Query: 66 EVRAASTTGWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFT 245
E++ G K LLIQ++ AP+IY+ N SG++Y+DP NY D D+QW R DFT
Sbjct: 159 EIQLYHPPGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFT 218
Query: 246 PFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQ 425
P + IGQS LCLELP +PN RE FAYY+ G +S N VPIV
Sbjct: 219 PLASIGQSYILCLELPADCYLPNIREYFAYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQY 278
Query: 426 GIEIPYDILFKVNSLVQHGCLAGPS 500
++PY+ILFK+N+LVQ+G L+GP+
Sbjct: 279 FTDVPYEILFKINNLVQNGILSGPT 303
[23][TOP]
>UniRef100_B5M060 RNA-directed RNA polymerase 1b n=1 Tax=Hordeum vulgare
RepID=B5M060_HORVU
Length = 1115
Score = 130 bits (327), Expect = 5e-29
Identities = 66/145 (45%), Positives = 88/145 (60%)
Frame = +3
Query: 66 EVRAASTTGWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFT 245
E++ G K LLIQ+ AP+IY+ N SG++Y+DP NY D D+QW R DFT
Sbjct: 159 EIQLHRPPGLQKKFLLIQVQAAPKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFT 218
Query: 246 PFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQ 425
P + IGQS LCLELP +PN RE F YYE ++ G +S N VP+V
Sbjct: 219 PSASIGQSYILCLELPHICYLPNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHY 278
Query: 426 GIEIPYDILFKVNSLVQHGCLAGPS 500
++PY+ILFK+N LVQ+G L+GP+
Sbjct: 279 FTDVPYEILFKINHLVQNGTLSGPT 303
[24][TOP]
>UniRef100_Q6RFH9 RNA-directed RNA polymerase 2 n=1 Tax=Hordeum vulgare subsp.
vulgare RepID=Q6RFH9_HORVD
Length = 1115
Score = 129 bits (325), Expect = 8e-29
Identities = 66/145 (45%), Positives = 88/145 (60%)
Frame = +3
Query: 66 EVRAASTTGWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFT 245
E++ G K LLIQ++ AP+IY+ N SG++Y+DP NY D D+QW R DFT
Sbjct: 159 EIQLYHPPGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFT 218
Query: 246 PFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQ 425
P + IGQS LCLELP +PN RE F YY+ G +S N VPIV
Sbjct: 219 PLASIGQSYILCLELPADCYLPNIREYFVYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQY 278
Query: 426 GIEIPYDILFKVNSLVQHGCLAGPS 500
++PY+ILFK+N+LVQ+G L+GP+
Sbjct: 279 FTDVPYEILFKINNLVQNGILSGPT 303
[25][TOP]
>UniRef100_Q6L3P6 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P6_SOLDE
Length = 1180
Score = 129 bits (325), Expect = 8e-29
Identities = 69/139 (49%), Positives = 91/139 (65%), Gaps = 2/139 (1%)
Frame = +3
Query: 90 GWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQS 269
G NA+ LLIQL GAPRIYK E+ ++ +TPD+QW+R DF P S IG S
Sbjct: 126 GQNAQFLLIQLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAP-SWIGLS 176
Query: 270 SALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPY 443
S+LCL+ G +PNF+E F +Y E T++TG F ++ + LVP V PP+GI IPY
Sbjct: 177 SSLCLQFRRGVHLPNFQEIFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPY 236
Query: 444 DILFKVNSLVQHGCLAGPS 500
ILFK++SLVQHGC+ GP+
Sbjct: 237 KILFKISSLVQHGCIPGPA 255
[26][TOP]
>UniRef100_A2X9D0 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2X9D0_ORYSI
Length = 1067
Score = 115 bits (289), Expect(2) = 9e-29
Identities = 65/134 (48%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Frame = +3
Query: 102 KHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALC 281
K LLIQ+ AP+IY+ SG +YEDP NY D D+QW R DFT S IGQS LC
Sbjct: 173 KFLLIQVQAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILC 232
Query: 282 LELPDGQCVPNFRENFAYYEESARRCTVET-GLPFSLNLRLVPIVAPPQGIEIPYDILFK 458
LE+P +PN R+ F YY E + G P+S + R VPIV +G +PY+ILFK
Sbjct: 233 LEVPRRCDLPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIV-KSRGY-VPYEILFK 290
Query: 459 VNSLVQHGCLAGPS 500
+N LVQ+G L+GP+
Sbjct: 291 INHLVQNGTLSGPT 304
Score = 34.7 bits (78), Expect(2) = 9e-29
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +1
Query: 25 TVRYKLELSYENIWKLELHQP 87
++ YKLELSYE+IW+++L +P
Sbjct: 147 SIEYKLELSYESIWEIQLQRP 167
[27][TOP]
>UniRef100_B9F2V8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9F2V8_ORYSJ
Length = 1027
Score = 115 bits (289), Expect(2) = 4e-28
Identities = 65/134 (48%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Frame = +3
Query: 102 KHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALC 281
K LLIQ+ AP+IY+ SG +YEDP NY D D+QW R DFT S IGQS LC
Sbjct: 173 KFLLIQVQAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILC 232
Query: 282 LELPDGQCVPNFRENFAYYEESARRCTVET-GLPFSLNLRLVPIVAPPQGIEIPYDILFK 458
LE+P +PN R+ F YY E + G P+S + R VPIV +G +PY+ILFK
Sbjct: 233 LEVPRRCDLPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIV-KSRGY-VPYEILFK 290
Query: 459 VNSLVQHGCLAGPS 500
+N LVQ+G L+GP+
Sbjct: 291 INHLVQNGTLSGPT 304
Score = 32.7 bits (73), Expect(2) = 4e-28
Identities = 11/21 (52%), Positives = 19/21 (90%)
Frame = +1
Query: 25 TVRYKLELSYENIWKLELHQP 87
++ YKLELS+E+IW+++L +P
Sbjct: 147 SIEYKLELSHESIWEIQLQRP 167
[28][TOP]
>UniRef100_Q6RFI0 RNA-directed RNA polymerase 1 n=1 Tax=Hordeum vulgare subsp.
vulgare RepID=Q6RFI0_HORVD
Length = 1115
Score = 126 bits (317), Expect = 7e-28
Identities = 65/145 (44%), Positives = 87/145 (60%)
Frame = +3
Query: 66 EVRAASTTGWNAKHLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFT 245
E++ G K LLIQ+ AP+IY+ N SG++Y+DP NY D D+QW R DFT
Sbjct: 159 EIQLHRPPGLQKKFLLIQVQAAPKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFT 218
Query: 246 PFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQ 425
P + IGQS L LELP +PN RE F YYE ++ G +S N VP+V
Sbjct: 219 PSASIGQSYILSLELPHICYLPNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHY 278
Query: 426 GIEIPYDILFKVNSLVQHGCLAGPS 500
++PY+ILFK+N LVQ+G L+GP+
Sbjct: 279 FTDVPYEILFKINHLVQNGTLSGPT 303
[29][TOP]
>UniRef100_C7F747 Putative RNA-dependent RNA polymerase n=1 Tax=Zea mays
RepID=C7F747_MAIZE
Length = 1108
Score = 110 bits (274), Expect(2) = 3e-27
Identities = 58/129 (44%), Positives = 74/129 (57%)
Frame = +3
Query: 108 LLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLE 287
LLIQ+ AP+IYKL G ++EDP N+ D DEQW R +DFTP + IGQSS
Sbjct: 175 LLIQVQAAPKIYKLLPGRPGLMFEDPFFNWFRDEKDEQWTRTIDFTPSASIGQSSIYVWR 234
Query: 288 LPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNS 467
+P + F YY+E G +S LVPIV P IE+PY+ILFK+N
Sbjct: 235 CQQQCELPRIGDYFVYYKEQNLDFECRNGYSYSCGSSLVPIVKSPDYIEVPYEILFKINH 294
Query: 468 LVQHGCLAG 494
LVQ+G L+G
Sbjct: 295 LVQNGTLSG 303
Score = 35.4 bits (80), Expect(2) = 3e-27
Identities = 12/19 (63%), Positives = 19/19 (100%)
Frame = +1
Query: 31 RYKLELSYENIWKLELHQP 87
++KLELSYE+IW+++LH+P
Sbjct: 147 KFKLELSYESIWEMQLHRP 165
[30][TOP]
>UniRef100_Q6L3V2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum
demissum RepID=Q6L3V2_SOLDE
Length = 963
Score = 123 bits (308), Expect = 7e-27
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 2/130 (1%)
Frame = +3
Query: 117 QLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPD 296
QL GAPRIYK E+ ++ +TPD+QW+R DFTP S IG SS+LCL+
Sbjct: 17 QLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLQFRR 67
Query: 297 GQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPYDILFKVNSL 470
G +PNF+E+F +Y E T++TG F ++ + LVP V PP+GI IPY ILFK++SL
Sbjct: 68 GVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSL 127
Query: 471 VQHGCLAGPS 500
VQHGC+ GP+
Sbjct: 128 VQHGCIPGPA 137
[31][TOP]
>UniRef100_Q6L3P3 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P3_SOLDE
Length = 1021
Score = 121 bits (303), Expect = 3e-26
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Frame = +3
Query: 117 QLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPD 296
+L GAPRIYK E+ ++ +TPD+QW+R DF P S IG SS+LCL+
Sbjct: 17 RLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRR 67
Query: 297 GQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPYDILFKVNSL 470
G +PNF+E+F +Y E T++TG F ++ + LVP V PP+GI IPY ILFK++SL
Sbjct: 68 GVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSL 127
Query: 471 VQHGCLAGPS 500
VQHGC+ GPS
Sbjct: 128 VQHGCIPGPS 137
[32][TOP]
>UniRef100_Q0KIK9 RNA-directed RNA polymerase, putative n=1 Tax=Solanum tuberosum
RepID=Q0KIK9_SOLTU
Length = 1050
Score = 121 bits (303), Expect = 3e-26
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Frame = +3
Query: 117 QLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPD 296
+L GAPRIYK E+ ++ +TPD+QW+R DF P S IG SS+LCL+
Sbjct: 17 RLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRR 67
Query: 297 GQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPYDILFKVNSL 470
G +PNF+E+F +Y E T++TG F ++ + LVP V PP+GI IPY ILFK++SL
Sbjct: 68 GVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSL 127
Query: 471 VQHGCLAGPS 500
VQHGC+ GPS
Sbjct: 128 VQHGCIPGPS 137
[33][TOP]
>UniRef100_Q0KIR2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum
demissum RepID=Q0KIR2_SOLDE
Length = 963
Score = 119 bits (299), Expect = 8e-26
Identities = 62/130 (47%), Positives = 84/130 (64%), Gaps = 2/130 (1%)
Frame = +3
Query: 117 QLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPD 296
+L GAPRIYK E+ ++ +TPD+QW+R DF P S IG SS+LCL+
Sbjct: 17 RLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRR 67
Query: 297 GQCVPNFRENFAYYEESARRCTVETGLPFSLNLR--LVPIVAPPQGIEIPYDILFKVNSL 470
G +PNF+E F +Y E T++TG F ++ + LVP V PP+GI IPY ILFK++SL
Sbjct: 68 GVHLPNFQEKFFHYAERENNITLQTGFTFFISQKSSLVPNVQPPEGIAIPYKILFKISSL 127
Query: 471 VQHGCLAGPS 500
VQHGC+ GP+
Sbjct: 128 VQHGCIPGPA 137
[34][TOP]
>UniRef100_C5YA80 Putative uncharacterized protein Sb06g019330 n=1 Tax=Sorghum
bicolor RepID=C5YA80_SORBI
Length = 1128
Score = 78.2 bits (191), Expect = 3e-13
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +3
Query: 108 LLIQLLGAPRIYK-LNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCL 284
+L+QL APRIY ++ T + + D + C + W+RA+DFTP + G+ S L L
Sbjct: 180 ILLQLTYAPRIYTAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNNSFGECSTLVL 239
Query: 285 ELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVN 464
+L G V + E+ + E + + L F + +VP+V P G +PY++LF++N
Sbjct: 240 KLSKGVPVSDILESLPFSGE-LEELAISSMLAFGSSSNVVPLVDCPNGFSVPYEVLFRLN 298
Query: 465 SLVQHGCL 488
SLV G L
Sbjct: 299 SLVHMGKL 306
[35][TOP]
>UniRef100_Q19VG2 RNA-dependent RNA polymerase n=1 Tax=Zea mays RepID=Q19VG2_MAIZE
Length = 1127
Score = 74.3 bits (181), Expect = 4e-12
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Frame = +3
Query: 108 LLIQLLGAPRIY-KLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCL 284
+L+QL APRI+ ++ T + + D + C + W+RA+DFTP S G+ S L L
Sbjct: 180 ILLQLTYAPRIHIAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNSSFGECSTLVL 239
Query: 285 ELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVN 464
+L G V E+ + E + F + +VP+V P G +PY++LF++N
Sbjct: 240 KLSKGASVSYILESLPFSGELGELAIASMDV-FGSSSNVVPLVDCPNGFSVPYEVLFRLN 298
Query: 465 SLVQHGCL 488
SLV G L
Sbjct: 299 SLVHMGKL 306
[36][TOP]
>UniRef100_B9RB56 RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis
RepID=B9RB56_RICCO
Length = 983
Score = 72.0 bits (175), Expect = 2e-11
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Frame = +3
Query: 63 LEVRAASTTGWNAKHLLIQLLGAPRIYK-LNNPTSGNVYEDPSMNYCMDTPDEQWIRAVD 239
LE G +L++L RIYK ++ P + + + C + D W+R D
Sbjct: 9 LETVGCRLGGDTLNAILLKLKYGARIYKKISGPDIASKFSADRYHMCKEDFDFIWVRTTD 68
Query: 240 FTPFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAP 419
F+ +GQS++ C E+ +G + ++F YY E+ +E G + +VP+V
Sbjct: 69 FSSVKSVGQSTSFCWEIEEGLEASDIFKSFPYYTEAREEVILEDGEEWGSASEIVPLVKC 128
Query: 420 PQGIEIPYDILFKVNSLV 473
++PY+ILF++NSLV
Sbjct: 129 GSDSKLPYEILFQLNSLV 146
[37][TOP]
>UniRef100_O82504 F2P3.11 protein n=1 Tax=Arabidopsis thaliana RepID=O82504_ARATH
Length = 1133
Score = 69.7 bits (169), Expect = 1e-10
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +3
Query: 111 LIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLEL 290
L++L P+++K ++ +C + D WIR DF+ IG S+ CLE+
Sbjct: 182 LLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEV 241
Query: 291 PDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIV-APPQGIEIPYDILFKVNS 467
+G + + YY E T G F+ ++VP++ A G+E PY+ILF++N+
Sbjct: 242 HNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNA 301
Query: 468 LV 473
LV
Sbjct: 302 LV 303
[38][TOP]
>UniRef100_Q19VG1 Truncated MOP1 (Fragment) n=1 Tax=Zea mays RepID=Q19VG1_MAIZE
Length = 310
Score = 69.3 bits (168), Expect = 1e-10
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +3
Query: 129 APRIYK-LNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQC 305
APRI+ ++ T + + D + C + W+RA+DFTP S G+ S L L+L G
Sbjct: 4 APRIHTAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGAS 63
Query: 306 VPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGC 485
V E+ + E + F + +VP+V P G +PY++LF++NSLV G
Sbjct: 64 VSYILESLPFSGELGELAIASMDV-FGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGK 122
Query: 486 L 488
L
Sbjct: 123 L 123
[39][TOP]
>UniRef100_B9IEP4 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9IEP4_POPTR
Length = 1110
Score = 69.3 bits (168), Expect = 1e-10
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Frame = +3
Query: 63 LEVRAASTTGWNAKHLLIQLLGAPRIY-KLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVD 239
LE G ++++L PRIY K++ P + + YC + D W+R D
Sbjct: 162 LEAVGYPLDGDKVNAVVLKLRYGPRIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRTTD 221
Query: 240 FTPFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAP 419
+ IGQS++ C E+ +G + NF YY+E R +E G F VP++
Sbjct: 222 ISAIKSIGQSTSFCWEIGEGLEASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRC 281
Query: 420 PQGIEIPYDILFKVNSLV 473
++ Y++LF++NSLV
Sbjct: 282 GSD-KLAYEVLFQLNSLV 298
[40][TOP]
>UniRef100_A7PD40 Chromosome chr17 scaffold_12, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PD40_VITVI
Length = 1127
Score = 68.6 bits (166), Expect = 2e-10
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Frame = +3
Query: 63 LEVRAASTTGWNAKHLLIQLLGAPRIY-KLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVD 239
LE A G LL++L AP+I+ K P + + + + + W+R D
Sbjct: 160 LESSACCLGGGKVNALLLKLKYAPKIFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTD 219
Query: 240 FTPFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAP 419
F+ +GQS++ C E+ +G + +F YY++ T+E G F + LVP+V
Sbjct: 220 FSSIKSLGQSTSFCWEIKEGFPALDIFASFPYYKD-LTELTLEQGEGFCSDSGLVPLVKC 278
Query: 420 PQGIEIPYDILFKVNSLV 473
G ++ Y+ILF++NSLV
Sbjct: 279 ESGPKLAYEILFQLNSLV 296
[41][TOP]
>UniRef100_Q19VG0 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Zea mays
RepID=Q19VG0_MAIZE
Length = 459
Score = 63.5 bits (153), Expect = 7e-09
Identities = 34/97 (35%), Positives = 50/97 (51%)
Frame = +3
Query: 198 CMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGL 377
C + W+RA+DFTP S G+ S L L+L G V E+ + E +
Sbjct: 5 CKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGELGELAIASMDV 64
Query: 378 PFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCL 488
F + +VP+V P G +PY++LF++NSLV G L
Sbjct: 65 -FGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKL 100
[42][TOP]
>UniRef100_Q647I4 Putative RNA-dependent RNA polymerase RdRP2 n=1 Tax=Nicotiana
benthamiana RepID=Q647I4_NICBE
Length = 1120
Score = 63.2 bits (152), Expect = 9e-09
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Frame = +3
Query: 108 LLIQLLGAPRIY-KLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCL 284
LL++L AP++Y +++ P + + + C + + W+R DF+ IG SS+ C
Sbjct: 177 LLLKLKHAPKLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCW 236
Query: 285 ELPDGQCVPNFRENFAYYEESARRCTV-ETGLPFSLNLRLVPIVAPPQGIEIPYDILFKV 461
E+ DG + Y + E G +S + LVP+ + P +++PY+ILF++
Sbjct: 237 EIEDGLLSSDLLSGLPYCNNDVMDLVLDEVGDIYSAS-ELVPLASFPSDLKLPYEILFQL 295
Query: 462 NSLV 473
NSL+
Sbjct: 296 NSLI 299
[43][TOP]
>UniRef100_A3AUN1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AUN1_ORYSJ
Length = 352
Score = 62.4 bits (150), Expect = 2e-08
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 108 LLIQLLGAPRIYK-LNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCL 284
+L+QL APRI+ ++ P + + D + C + W+RA+DFTP G+ S L L
Sbjct: 178 ILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVL 237
Query: 285 ELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVN 464
+L V + ++ + + T+ + + +VP+V P+ +PY++LF++N
Sbjct: 238 KLGKSALVSDILKSLP-FSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLN 296
Query: 465 SLVQHG 482
SL+ G
Sbjct: 297 SLMHMG 302
[44][TOP]
>UniRef100_A2XUF4 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XUF4_ORYSI
Length = 1136
Score = 62.4 bits (150), Expect = 2e-08
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 108 LLIQLLGAPRIYK-LNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCL 284
+L+QL APRI+ ++ P + + D + C + W+RA+DFTP G+ S L L
Sbjct: 178 ILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVL 237
Query: 285 ELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVN 464
+L V + ++ + + T+ + + +VP+V P+ +PY++LF++N
Sbjct: 238 KLGKSALVSDILKSLP-FSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLN 296
Query: 465 SLVQHG 482
SL+ G
Sbjct: 297 SLMHMG 302
[45][TOP]
>UniRef100_Q7XM31 Probable RNA-dependent RNA polymerase 2 n=1 Tax=Oryza sativa
Japonica Group RepID=RDR2_ORYSJ
Length = 1136
Score = 62.4 bits (150), Expect = 2e-08
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 108 LLIQLLGAPRIYK-LNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCL 284
+L+QL APRI+ ++ P + + D + C + W+RA+DFTP G+ S L L
Sbjct: 178 ILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVL 237
Query: 285 ELPDGQCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVN 464
+L V + ++ + + T+ + + +VP+V P+ +PY++LF++N
Sbjct: 238 KLGKSALVSDILKSLP-FSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLN 296
Query: 465 SLVQHG 482
SL+ G
Sbjct: 297 SLMHMG 302