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[1][TOP]
>UniRef100_B9HFY1 Putative uncharacterized protein RDR908 n=1 Tax=Populus trichocarpa
RepID=B9HFY1_POPTR
Length = 406
Score = 178 bits (451), Expect = 2e-43
Identities = 78/122 (63%), Positives = 106/122 (86%)
Frame = -2
Query: 422 EEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDI 243
EEKK L+GG++ +P+ +YLMGT DPTG L+++EVCII + GQ++G+VLVYRNPGLHFGDI
Sbjct: 285 EEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDI 344
Query: 242 HIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQVSISILV 63
HI+ A YV ELE +VG++KYAIFFPC GPRS+ADE++GGDFDGD+++VS++P+VS+ V
Sbjct: 345 HILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPRVSVIFSV 404
Query: 62 QK 57
+
Sbjct: 405 SR 406
[2][TOP]
>UniRef100_B9P5T9 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9P5T9_POPTR
Length = 320
Score = 175 bits (443), Expect = 2e-42
Identities = 76/114 (66%), Positives = 102/114 (89%)
Frame = -2
Query: 422 EEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDI 243
EEKK L+GG++ +P+ +YLMGT DPTG L+++EVCII + GQI+G+VL+YRNPGLHFGDI
Sbjct: 61 EEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDI 120
Query: 242 HIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
HI+ A YV ELE +VG++KYAIFFPC GPRS+ADE++GGDFDGD+++VS++PQ+
Sbjct: 121 HILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQL 174
[3][TOP]
>UniRef100_UPI00019842AC PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI00019842AC
Length = 943
Score = 168 bits (425), Expect = 2e-40
Identities = 75/114 (65%), Positives = 97/114 (85%)
Frame = -2
Query: 422 EEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDI 243
EE+K LR G+L + DCFYLMGT DPTG LK++EVCII ++GQ+ G VLVY++PGLHFGDI
Sbjct: 548 EERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDI 607
Query: 242 HIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
H+++A YVE LE +VG++KYAIFFP GPRS+ADE+A DFDGD+YWVS++ Q+
Sbjct: 608 HVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQL 661
[4][TOP]
>UniRef100_A7PEI0 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PEI0_VITVI
Length = 788
Score = 168 bits (425), Expect = 2e-40
Identities = 75/114 (65%), Positives = 97/114 (85%)
Frame = -2
Query: 422 EEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDI 243
EE+K LR G+L + DCFYLMGT DPTG LK++EVCII ++GQ+ G VLVY++PGLHFGDI
Sbjct: 393 EERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDI 452
Query: 242 HIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
H+++A YVE LE +VG++KYAIFFP GPRS+ADE+A DFDGD+YWVS++ Q+
Sbjct: 453 HVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQL 506
[5][TOP]
>UniRef100_UPI000034ED42 RNA-dependent RNA polymerase family protein n=1 Tax=Arabidopsis
thaliana RepID=UPI000034ED42
Length = 977
Score = 166 bits (421), Expect = 6e-40
Identities = 74/113 (65%), Positives = 97/113 (85%)
Frame = -2
Query: 419 EKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDIH 240
EK L+ G+L + + +YLMGTVDPTG LK +EVC+I E+GQI+G+VLVYRNPGLHFGDIH
Sbjct: 584 EKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIH 643
Query: 239 IMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
I+ A YV+ LE YVG+SK+A+FFP GPRS+ DEIAGGDFDGD+Y++S++P++
Sbjct: 644 ILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPEL 696
[6][TOP]
>UniRef100_O82188 Putative uncharacterized protein At2g19930 n=1 Tax=Arabidopsis
thaliana RepID=O82188_ARATH
Length = 929
Score = 166 bits (421), Expect = 6e-40
Identities = 74/113 (65%), Positives = 97/113 (85%)
Frame = -2
Query: 419 EKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDIH 240
EK L+ G+L + + +YLMGTVDPTG LK +EVC+I E+GQI+G+VLVYRNPGLHFGDIH
Sbjct: 504 EKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIH 563
Query: 239 IMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
I+ A YV+ LE YVG+SK+A+FFP GPRS+ DEIAGGDFDGD+Y++S++P++
Sbjct: 564 ILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPEL 616
[7][TOP]
>UniRef100_UPI000034ED40 RNA-dependent RNA polymerase family protein n=1 Tax=Arabidopsis
thaliana RepID=UPI000034ED40
Length = 992
Score = 164 bits (416), Expect = 2e-39
Identities = 70/113 (61%), Positives = 95/113 (84%)
Frame = -2
Query: 419 EKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDIH 240
E+ L+ GR + + +Y+MGTVDPTG LK NE+C+I +GQI+GDVLVYRNPGLHFGDIH
Sbjct: 595 ERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIH 654
Query: 239 IMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
++ A YV+ LE YVG++K+A+FFP GPRS+ DEIAGGDFDGD+Y++S++P++
Sbjct: 655 VLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKL 707
[8][TOP]
>UniRef100_O82190 Putative uncharacterized protein At2g19910 n=1 Tax=Arabidopsis
thaliana RepID=O82190_ARATH
Length = 966
Score = 164 bits (416), Expect = 2e-39
Identities = 70/113 (61%), Positives = 95/113 (84%)
Frame = -2
Query: 419 EKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDIH 240
E+ L+ GR + + +Y+MGTVDPTG LK NE+C+I +GQI+GDVLVYRNPGLHFGDIH
Sbjct: 569 ERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIH 628
Query: 239 IMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
++ A YV+ LE YVG++K+A+FFP GPRS+ DEIAGGDFDGD+Y++S++P++
Sbjct: 629 VLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKL 681
[9][TOP]
>UniRef100_C5XLU8 Putative uncharacterized protein Sb03g002800 n=1 Tax=Sorghum bicolor
RepID=C5XLU8_SORBI
Length = 1127
Score = 164 bits (414), Expect = 4e-39
Identities = 74/117 (63%), Positives = 96/117 (82%)
Frame = -2
Query: 431 LAIEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHF 252
+A E+K L+ GR+ + D +YLMGT DPTG LK ++VCII +NGQ++G VLVY++PGLHF
Sbjct: 722 MAKVERKGLKEGRIPIDDTYYLMGTTDPTGTLKRDQVCIILDNGQLSGKVLVYKHPGLHF 781
Query: 251 GDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
GDIHI+ A Y++ LE VG+SKYAIFFP GPRS+ADE+A DFDGDLYWVS++PQ+
Sbjct: 782 GDIHILTATYIDGLEKIVGNSKYAIFFPTCGPRSLADEMANSDFDGDLYWVSRNPQL 838
[10][TOP]
>UniRef100_B8A6J1 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8A6J1_ORYSI
Length = 1155
Score = 162 bits (410), Expect = 1e-38
Identities = 70/118 (59%), Positives = 97/118 (82%), Gaps = 1/118 (0%)
Frame = -2
Query: 431 LAIEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHF 252
+A +E+K ++ G++ + +C+YLM T DPTG L+ NEVC+I ENGQ +GDVLVY++PGLHF
Sbjct: 774 MAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFSGDVLVYKHPGLHF 833
Query: 251 GDIHIMHARYVEELE-SYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
GDIH++ A Y+ +LE YVG++KYAI FP GPRS+ADE+A DFDGD+YWVSK+P++
Sbjct: 834 GDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKL 891
[11][TOP]
>UniRef100_Q5QMN5 Probable RNA-dependent RNA polymerase 3 n=1 Tax=Oryza sativa Japonica
Group RepID=RDR3_ORYSJ
Length = 1153
Score = 162 bits (410), Expect = 1e-38
Identities = 70/118 (59%), Positives = 97/118 (82%), Gaps = 1/118 (0%)
Frame = -2
Query: 431 LAIEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHF 252
+A +E+K ++ G++ + +C+YLM T DPTG L+ NEVC+I ENGQ +GDVLVY++PGLHF
Sbjct: 754 MAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFSGDVLVYKHPGLHF 813
Query: 251 GDIHIMHARYVEELE-SYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
GDIH++ A Y+ +LE YVG++KYAI FP GPRS+ADE+A DFDGD+YWVSK+P++
Sbjct: 814 GDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKL 871
[12][TOP]
>UniRef100_B9ETN2 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group
RepID=B9ETN2_ORYSJ
Length = 1148
Score = 151 bits (381), Expect = 2e-35
Identities = 65/117 (55%), Positives = 92/117 (78%)
Frame = -2
Query: 431 LAIEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHF 252
L++ E+K ++ G++ + DC+YLMGT DPTG+L NEVC+I + GQ++GDVLVY+ PGLH
Sbjct: 740 LSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHP 799
Query: 251 GDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
GDIH++ A Y ++E VG+SK+AI FP G RS+ADE+A DFDGD+YWVS +P++
Sbjct: 800 GDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKL 856
[13][TOP]
>UniRef100_Q5QMN4 Probable RNA-dependent RNA polymerase 4 n=1 Tax=Oryza sativa Japonica
Group RepID=RDR4_ORYSJ
Length = 1183
Score = 151 bits (381), Expect = 2e-35
Identities = 65/117 (55%), Positives = 92/117 (78%)
Frame = -2
Query: 431 LAIEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHF 252
L++ E+K ++ G++ + DC+YLMGT DPTG+L NEVC+I + GQ++GDVLVY+ PGLH
Sbjct: 775 LSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHP 834
Query: 251 GDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
GDIH++ A Y ++E VG+SK+AI FP G RS+ADE+A DFDGD+YWVS +P++
Sbjct: 835 GDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKL 891
[14][TOP]
>UniRef100_B8A6J2 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8A6J2_ORYSI
Length = 1172
Score = 148 bits (374), Expect = 2e-34
Identities = 64/117 (54%), Positives = 91/117 (77%)
Frame = -2
Query: 431 LAIEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHF 252
L++ E+K ++ G++ + DC+YLMGT DPTG+L NEVC+I + GQ++GDVLVY+ PGLH
Sbjct: 751 LSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHP 810
Query: 251 GDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
GDIH++ A Y ++ VG+SK+AI FP G RS+ADE+A DFDGD+YWVS +P++
Sbjct: 811 GDIHVLKATYSSDIGKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKL 867
[15][TOP]
>UniRef100_UPI000034ED41 RNA-dependent RNA polymerase family protein n=1 Tax=Arabidopsis
thaliana RepID=UPI000034ED41
Length = 927
Score = 145 bits (367), Expect = 1e-33
Identities = 70/118 (59%), Positives = 91/118 (77%)
Frame = -2
Query: 434 KLAIEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLH 255
KL EK L+ G+L + + +YLMGTVDPTG LK +EV + ++ DVLVYRNPGLH
Sbjct: 583 KLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVSGLAKSQ----DVLVYRNPGLH 638
Query: 254 FGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
FGDIHI+ A YV+ LE YVG+SKY +FFP GPRS+ DEIAGGDFDGD+Y++S++P++
Sbjct: 639 FGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKL 696
[16][TOP]
>UniRef100_O82189 Putative uncharacterized protein At2g19920 n=1 Tax=Arabidopsis
thaliana RepID=O82189_ARATH
Length = 905
Score = 138 bits (347), Expect = 2e-31
Identities = 66/118 (55%), Positives = 85/118 (72%)
Frame = -2
Query: 434 KLAIEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLH 255
KL EK L+ G+L + + +YLMGTVDPTG LK +EVC+I NPGLH
Sbjct: 588 KLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVCVI-------------LNPGLH 634
Query: 254 FGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
FGDIHI+ A YV+ LE YVG+SKY +FFP GPRS+ DEIAGGDFDGD+Y++S++P++
Sbjct: 635 FGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKL 692
[17][TOP]
>UniRef100_B9RKI7 RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis
RepID=B9RKI7_RICCO
Length = 114
Score = 123 bits (309), Expect = 6e-27
Identities = 54/81 (66%), Positives = 71/81 (87%)
Frame = -2
Query: 308 ENGQITGDVLVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAG 129
+N I+G VLVYRNPGLHFGDIH++ A YV+ LE +VG++KYAIFFPC GP+S+ADEIAG
Sbjct: 24 DNEHISGKVLVYRNPGLHFGDIHVLKATYVKALEDFVGNAKYAIFFPCKGPQSLADEIAG 83
Query: 128 GDFDGDLYWVSKHPQVSISIL 66
GDF+ D+Y+VS++P+VSI +L
Sbjct: 84 GDFNNDMYFVSRNPEVSIFLL 104
[18][TOP]
>UniRef100_A9TZH6 RNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TZH6_PHYPA
Length = 1042
Score = 109 bits (273), Expect = 8e-23
Identities = 59/130 (45%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Frame = -2
Query: 434 KLAIEEKKRLRGGRLYLPDCFYLMGTVDPTGR--LKANEVCIIHENGQITGDVLVYRNPG 261
K++ ++ LR G + LP YLMGT DPT LK NEV +I ++ G VLVY+NPG
Sbjct: 634 KISQDKIALLRKGCVPLPQSCYLMGTCDPTKERVLKPNEVAVIKNGDKVLGKVLVYKNPG 693
Query: 260 LHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
H+GD+H+ A + E L YVG + IFF G R + DEIA D DGD YWV + Q
Sbjct: 694 KHWGDVHVFDAVWDERLNPYVGPANQTIFFSVRGNRPVVDEIANSDLDGDFYWVCFNTQA 753
Query: 80 SISILVQKSS 51
+ S L SS
Sbjct: 754 TNSFLDYFSS 763
[19][TOP]
>UniRef100_A9TF55 RNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TF55_PHYPA
Length = 1040
Score = 108 bits (271), Expect = 1e-22
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
Frame = -2
Query: 434 KLAIEEKKRLRGGRLYLPDCFYLMGTVDPTGR--LKANEVCIIHENGQITGDVLVYRNPG 261
K+ ++ LR G L LP +YLMGT DPT LK NEV I+ ++ G VLVY+NPG
Sbjct: 628 KITQDKIALLRKGCLPLPQSYYLMGTSDPTKEKVLKPNEVAIVKNGEKVIGKVLVYKNPG 687
Query: 260 LHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
H+GD+HI A + E L YVG +K+AIFF G R + DEIA D GDL+W+
Sbjct: 688 KHWGDVHIFDAVWDERLNPYVGPTKHAIFFSVRGNRPVVDEIANSDLCGDLFWL 741
[20][TOP]
>UniRef100_A5ANX1 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5ANX1_VITVI
Length = 1202
Score = 107 bits (267), Expect = 4e-22
Identities = 48/72 (66%), Positives = 62/72 (86%)
Frame = -2
Query: 422 EEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDI 243
EE+K LR G+L + DCFYLMGT DPTG+LK++EVCII ++GQ+ G VLVY++PGLHFGDI
Sbjct: 863 EERKGLRVGKLPVNDCFYLMGTADPTGKLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDI 922
Query: 242 HIMHARYVEELE 207
H+++A YVE LE
Sbjct: 923 HVLNATYVEALE 934
[21][TOP]
>UniRef100_Q0WNQ6 Putative uncharacterized protein At2g19930 (Fragment) n=1
Tax=Arabidopsis thaliana RepID=Q0WNQ6_ARATH
Length = 339
Score = 90.9 bits (224), Expect = 4e-17
Identities = 38/58 (65%), Positives = 51/58 (87%)
Frame = -2
Query: 254 FGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
FGDIHI+ A YV+ LE YVG+SK+A+FFP GPRS+ DEIAGGDFDGD+Y++S++P++
Sbjct: 1 FGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPEL 58
[22][TOP]
>UniRef100_Q6RFH9 RNA-directed RNA polymerase 2 n=1 Tax=Hordeum vulgare subsp. vulgare
RepID=Q6RFH9_HORVD
Length = 1115
Score = 72.0 bits (175), Expect = 2e-11
Identities = 43/112 (38%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ-------ITGDVLVYRNPGLHFGDIHI 237
R+++P+ +MG +D T LK EV I N +TG V+V +NP LH GDI I
Sbjct: 709 RIFIPEGRAMMGCLDETRTLKYGEVFIQASNSANESDKFVVTGKVVVAKNPCLHPGDIRI 768
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
+ A Y L+ H + FP GPR +E +G D DGD+Y+VS P +
Sbjct: 769 LEAVYTPVLD----HMVNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDL 816
[23][TOP]
>UniRef100_B5M059 RNA-directed RNA polymerase 1a (Fragment) n=1 Tax=Hordeum vulgare
RepID=B5M059_HORVU
Length = 1114
Score = 71.6 bits (174), Expect = 3e-11
Identities = 43/112 (38%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ-------ITGDVLVYRNPGLHFGDIHI 237
R+++P+ +MG +D T LK EV I N +TG V+V +NP LH GDI I
Sbjct: 709 RIFIPEGRAMMGCLDETRTLKYGEVFIQASNSANESDKFVVTGKVVVAKNPCLHPGDIRI 768
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
+ A Y L+ H + FP GPR +E +G D DGD+Y+VS P +
Sbjct: 769 LKAVYTPVLD----HMVNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDL 816
[24][TOP]
>UniRef100_Q6RFI0 RNA-directed RNA polymerase 1 n=1 Tax=Hordeum vulgare subsp. vulgare
RepID=Q6RFI0_HORVD
Length = 1115
Score = 68.9 bits (167), Expect = 2e-10
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ-------ITGDVLVYRNPGLHFGDIHI 237
R+++P +MG +D T LK +V I N +TG V+V +NP +H GDI I
Sbjct: 708 RIFVPKGRAMMGCLDETRTLKYGQVFIQASNSADDRGKSVVTGKVIVAKNPCIHPGDIRI 767
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
+ A + +GH + FP +GPR +E +G D DGD+Y+VS P +
Sbjct: 768 LQAVH----SPLLGHMVNCVVFPQLGPRPHPNECSGSDLDGDIYFVSWDPDL 815
[25][TOP]
>UniRef100_B5M060 RNA-directed RNA polymerase 1b n=1 Tax=Hordeum vulgare
RepID=B5M060_HORVU
Length = 1115
Score = 68.9 bits (167), Expect = 2e-10
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ-------ITGDVLVYRNPGLHFGDIHI 237
R+++P +MG +D T LK +V I N +TG V+V +NP +H GDI I
Sbjct: 708 RIFVPKGRAMMGCLDETRTLKYGQVFIQASNSADDRGKSVVTGKVIVAKNPCIHPGDIRI 767
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
+ A + +GH + FP +GPR +E +G D DGD+Y+VS P +
Sbjct: 768 LQAVH----SPLLGHMVNCVVFPQLGPRPHPNECSGSDLDGDIYFVSWDPDL 815
[26][TOP]
>UniRef100_UPI0000DF085E Os02g0736200 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DF085E
Length = 476
Score = 67.8 bits (164), Expect = 4e-10
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCI-----IHENGQ--ITGDVLVYRNPGLHFGDIHI 237
R+ +P +MG +D T LK +V I +++N + +TG V++ +NP LH GDI I
Sbjct: 363 RILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRI 422
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
+HA V L H + FP GPR +E +G D DGD+Y+VS P +
Sbjct: 423 LHAVDVPVLH----HMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSL 470
[27][TOP]
>UniRef100_Q0DXS3 Probable RNA-dependent RNA polymerase 1 n=1 Tax=Oryza sativa
Japonica Group RepID=RDR1_ORYSJ
Length = 740
Score = 67.8 bits (164), Expect = 4e-10
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCI-----IHENGQ--ITGDVLVYRNPGLHFGDIHI 237
R+ +P +MG +D T LK +V I +++N + +TG V++ +NP LH GDI I
Sbjct: 336 RILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRI 395
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
+HA V L H + FP GPR +E +G D DGD+Y+VS P +
Sbjct: 396 LHAVDVPVLH----HMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSL 443
[28][TOP]
>UniRef100_C3Z737 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z737_BRAFL
Length = 1492
Score = 64.7 bits (156), Expect = 3e-09
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVCIIH---------ENGQITGDVLVYRNPGLHFGDIHIMHARYVE 216
++G +D TG L+ +V + + E +TGDV+V RNP H GD+ + A V
Sbjct: 815 MLGVLDETGTLEYGQVFVQYTEDITDKGGETKVLTGDVVVSRNPCFHPGDVRKLRAVDVP 874
Query: 215 ELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
L H I FP GPR +E++GGD DGD ++V+ HP +
Sbjct: 875 ALH----HMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWHPDL 915
[29][TOP]
>UniRef100_UPI0001868BE6 hypothetical protein BRAFLDRAFT_101867 n=1 Tax=Branchiostoma
floridae RepID=UPI0001868BE6
Length = 1395
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVCIIH---------ENGQITGDVLVYRNPGLHFGDIHIMHARYVE 216
++G +D TG L+ +V + + E +TGDV+V RNP H GD+ + A V
Sbjct: 688 MLGVLDETGTLEYGQVFVQYTEDITDKGGETKVLTGDVVVSRNPCFHPGDVRKLRAVDVP 747
Query: 215 ELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
L H I FP GPR +E++GGD DGD ++V+ HP +
Sbjct: 748 GLH----HMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWHPDL 788
[30][TOP]
>UniRef100_C7F747 Putative RNA-dependent RNA polymerase n=1 Tax=Zea mays
RepID=C7F747_MAIZE
Length = 1108
Score = 63.9 bits (154), Expect = 5e-09
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCII-------HENGQITGDVLVYRNPGLHFGDIHI 237
R+++ +MG +D T LK +V + H +TG V+V +NP LH GDI +
Sbjct: 711 RIFITQGRAMMGCLDETCTLKYGQVFVQASYSADDHRKVVVTGKVVVAKNPCLHPGDIRV 770
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQVSISILVQK 57
+ A V L H + FP GPR +E +G D DGD+Y+VS P + S LV
Sbjct: 771 LQAVDVPALH----HLFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPHLIPSRLVDP 826
Query: 56 SSCT 45
T
Sbjct: 827 MDYT 830
[31][TOP]
>UniRef100_C5XZ94 Putative uncharacterized protein Sb04g028630 n=1 Tax=Sorghum bicolor
RepID=C5XZ94_SORBI
Length = 1114
Score = 63.2 bits (152), Expect = 9e-09
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCII-------HENGQITGDVLVYRNPGLHFGDIHI 237
R+++ +MG +D T LK +V I H +TG V+V +NP LH GDI +
Sbjct: 711 RIFITQGRAMMGCLDETRTLKYGQVFIQASYCADDHHKIVVTGKVVVAKNPCLHPGDIRV 770
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
+ A V L H + FP GPR +E +G D DGD+Y+VS P +
Sbjct: 771 LQAVDVPSLH----HMFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDL 818
[32][TOP]
>UniRef100_C3Z736 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z736_BRAFL
Length = 1282
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 8/102 (7%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVCIIH------ENGQ--ITGDVLVYRNPGLHFGDIHIMHARYVEE 213
++G +D TG L+ +V + + + GQ +TGDV+V RNP H GD+ + A +
Sbjct: 600 MLGVLDETGTLEYGQVFVQYTEDITDKGGQTKVTGDVVVTRNPCFHPGDLRKLRAVDIPS 659
Query: 212 LESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHP 87
L H I FP GPR +E++GGD DGD ++V+ +P
Sbjct: 660 LH----HMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWYP 697
[33][TOP]
>UniRef100_UPI0001868CDD hypothetical protein BRAFLDRAFT_101868 n=1 Tax=Branchiostoma
floridae RepID=UPI0001868CDD
Length = 1317
Score = 62.0 bits (149), Expect = 2e-08
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVCIIH------ENGQ--ITGDVLVYRNPGLHFGDIHIMHARYVEE 213
++G +D TG L+ +V + + + GQ +TGDV+V RNP H GD+ + A +
Sbjct: 641 MLGVLDETGTLEYGQVFVQYTEDITDKGGQTKVTGDVVVTRNPCFHPGDLRKLRAVDIPS 700
Query: 212 LESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKH 90
L H I FP GPR +E++GGD DGD ++V+ H
Sbjct: 701 LH----HMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWH 737
[34][TOP]
>UniRef100_A9U458 RNA-directed RNA polymerase (Fragment) n=2 Tax=Physcomitrella
patens subsp. patens RepID=A9U458_PHYPA
Length = 1049
Score = 62.0 bits (149), Expect = 2e-08
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 21/126 (16%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ---------------------ITGDVL 279
R+++P+ +++G +D TG L + C IH +G ITG V+
Sbjct: 622 RIFVPNGRWVIGCMDETGLLNYGQ-CFIHVSGPVSKACLGGDGNNLGHSGLLQVITGKVI 680
Query: 278 VYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
+ +NP LH GDI I+ A + EL S V + P GPR +E++G D DGD+Y+
Sbjct: 681 MVKNPCLHPGDIRILEAVDLPELHSMVD----CLVLPQNGPRPHPNEVSGSDLDGDVYFT 736
Query: 98 SKHPQV 81
P +
Sbjct: 737 CWDPNL 742
[35][TOP]
>UniRef100_A7SSD5 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis
RepID=A7SSD5_NEMVE
Length = 531
Score = 60.8 bits (146), Expect = 4e-08
Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Frame = -2
Query: 407 LRGGRLYLPDCF--YLMGTVDPTGRLKANEVCIIHEN-----GQ----ITGDVLVYRNPG 261
LR R+ +P+ LMG +D TG L EV I + GQ +TGDV+V +NP
Sbjct: 238 LRRARIAIPESHGRLLMGVLDETGSLDYGEVFIRYTTELGNPGQGYTILTGDVVVSKNPC 297
Query: 260 LHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVS 96
H GD+ +A + L V I FP GPR DE++G D DGD Y+ +
Sbjct: 298 FHPGDMRKFNAVDIPALYHLVD----CIVFPAKGPRPHTDEMSGSDLDGDKYFAT 348
[36][TOP]
>UniRef100_Q3SE67 Chromosome undetermined scaffold_85, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=Q3SE67_PARTE
Length = 1331
Score = 59.3 bits (142), Expect = 1e-07
Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 12/108 (11%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEV-CIIHEN-----GQITGDVLVYRNPGLHFGDIHIMHARYVEE-L 210
++G VD L EV CI+ ++ ITG+++V RNP LH GDI + A E L
Sbjct: 861 VLGVVDDYDILDQGEVVCIVKQSLDVNHKYITGEIIVVRNPCLHPGDIRKVRALSENEIL 920
Query: 209 ESYVGHSKYA-----IFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
Y + +A I FPC G SI + GGD DGD+Y+VS P+V
Sbjct: 921 SRYNMKNPFAEYYNCIVFPCKG-NSIPADCGGGDLDGDIYFVSWDPKV 967
[37][TOP]
>UniRef100_Q0CB90 Predicted protein n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0CB90_ASPTN
Length = 1039
Score = 58.5 bits (140), Expect = 2e-07
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHE--NGQIT-----GDVLVYRNPGLHFGDIHI 237
R+ +P L G +D TG LK NEV I + +G G VLV R+P L+ GDI +
Sbjct: 728 RIPVPQGMTLYGIIDETGYLKENEVFITFDTISGLYAAPPGPGPVLVTRSPALYDGDIQV 787
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQVS 78
V + + K I F G R + +++GGD DGDLY V P V+
Sbjct: 788 AR-NVVPPPDHPLARHKNCIIFSQQGARDLPSQLSGGDLDGDLYHVIWDPIVA 839
[38][TOP]
>UniRef100_C3Z3S5 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z3S5_BRAFL
Length = 1922
Score = 58.2 bits (139), Expect = 3e-07
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Frame = -2
Query: 407 LRGGRLYLP--DCFYLMGTVDPTGRLKANEVCIIH---------ENGQITGDVLVYRNPG 261
LR R+ LP + +MGT+D TG+L+ +V + + E G V V +NP
Sbjct: 731 LRRTRIQLPAGEGRIMMGTMDETGKLQYGQVFLQYSRETDRPQAEKIVHQGQVTVTKNPC 790
Query: 260 LHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVS 96
H GD+ A V EL H I FP GPR DE++G D DGD+Y+V+
Sbjct: 791 FHPGDMRKFTAVDVPELR----HMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVT 841
[39][TOP]
>UniRef100_A7RZN9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis
RepID=A7RZN9_NEMVE
Length = 127
Score = 57.8 bits (138), Expect = 4e-07
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHEN---------GQITGDVLVYRNPGLHFGDI 243
R+ +P+ + G DP G L+ + C+ H Q+ +V+V RNP + GDI
Sbjct: 21 RILVPNSRVVFGVCDPFGELEYGQ-CVFHPTLYDEVRIAEYQVATEVMVVRNPCYYPGDI 79
Query: 242 HIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVS 96
++ + V+ L Y + I FP G R ADE +GGD DGD ++VS
Sbjct: 80 RVL--KLVKNLPQYA-YLNDCIVFPTKGSRPHADESSGGDLDGDEFFVS 125
[40][TOP]
>UniRef100_Q55P56 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q55P56_CRYNE
Length = 1123
Score = 57.8 bits (138), Expect = 4e-07
Identities = 41/103 (39%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEV-CIIHENGQ-----ITGDVLVYRNPGLHFGDIHIM 234
R+ L D YL+G D TG LK EV C EN + + +VLV R P LH GD+
Sbjct: 705 RVKLLDGVYLIGIADETGTLKEGEVFCQFQENDESPPKIVVNEVLVCRAPALHPGDVRRA 764
Query: 233 HARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLY 105
A EL H K I F G R + + GGD DGD Y
Sbjct: 765 WAVDNPELR----HLKNVIVFSTQGMRDMPSMLGGGDLDGDDY 803
[41][TOP]
>UniRef100_B6K409 RNA-directed RNA polymerase Rdp1 n=1 Tax=Schizosaccharomyces
japonicus yFS275 RepID=B6K409_SCHJY
Length = 1213
Score = 57.4 bits (137), Expect = 5e-07
Identities = 47/137 (34%), Positives = 62/137 (45%), Gaps = 24/137 (17%)
Frame = -2
Query: 425 IEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKAN---------EVCII------HENGQIT 291
I+EK+RLR + + +LMG D TG LK + EV I + + +T
Sbjct: 781 IKEKQRLR-----VKEGAFLMGVADETGTLKGHYNDSVLPIPEVFIQITDPSKNADATVT 835
Query: 290 GDV---------LVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADE 138
G + +V RNP LH GD+ + A EL H K I FP G S+ +
Sbjct: 836 GKIKTTIIMGLCVVVRNPALHPGDVRVCRAVRCNELL----HLKNVIVFPTTGDLSVTEM 891
Query: 137 IAGGDFDGDLYWVSKHP 87
AGGD DGD Y V P
Sbjct: 892 CAGGDLDGDEYTVIWDP 908
[42][TOP]
>UniRef100_Q24E25 RNA dependent RNA polymerase family protein n=1 Tax=Tetrahymena
thermophila SB210 RepID=Q24E25_TETTH
Length = 1439
Score = 57.0 bits (136), Expect = 6e-07
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Frame = -2
Query: 392 LYLPDCFYLMGTVDPTGRLKANEV-CIIHENG-----QITGDVLVYRNPGLHFGDIHIMH 231
++L LMG +D L+ +EV I ++ Q+ GDV+V +NP LH GDI +
Sbjct: 902 IFLKKSARLMGVIDEYNVLEQDEVFAYISQDSEKSFFQVEGDVIVVKNPCLHPGDIRKLK 961
Query: 230 ARYVEELESYVGHSKY--------AIFFPCVGPRSIADEIAGGDFDGDLYWV 99
A +E + +G K + FP G I +IAG D DGD Y++
Sbjct: 962 AVTLETISQRLGEGKINPFKKLRNILIFPQKGKEPITSQIAGSDLDGDCYFI 1013
[43][TOP]
>UniRef100_Q0MSN7 RNA-dependent RNA polymerase n=1 Tax=Tetrahymena thermophila
RepID=Q0MSN7_TETTH
Length = 1434
Score = 57.0 bits (136), Expect = 6e-07
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Frame = -2
Query: 392 LYLPDCFYLMGTVDPTGRLKANEV-CIIHENG-----QITGDVLVYRNPGLHFGDIHIMH 231
++L LMG +D L+ +EV I ++ Q+ GDV+V +NP LH GDI +
Sbjct: 897 IFLKKSARLMGVIDEYNVLEQDEVFAYISQDSEKSFFQVEGDVIVVKNPCLHPGDIRKLK 956
Query: 230 ARYVEELESYVGHSKY--------AIFFPCVGPRSIADEIAGGDFDGDLYWV 99
A +E + +G K + FP G I +IAG D DGD Y++
Sbjct: 957 AVTLETISQRLGEGKINPFKKLRNILIFPQKGKEPITSQIAGSDLDGDCYFI 1008
[44][TOP]
>UniRef100_C3ZPA8 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3ZPA8_BRAFL
Length = 1867
Score = 57.0 bits (136), Expect = 6e-07
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Frame = -2
Query: 407 LRGGRLYLP--DCFYLMGTVDPTGRLKANEVCIIH---------ENGQITGDVLVYRNPG 261
LR R+ +P + +MGT+D TG+L+ +V I + + G V V +NP
Sbjct: 711 LRRTRIEIPAGEGRIMMGTMDETGKLQYGQVFIQYSREVDKPQADKVVHQGQVTVTKNPC 770
Query: 260 LHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVS 96
H GD+ A V EL H I FP GPR DE++G D DGD+Y+V+
Sbjct: 771 FHPGDMRKFTAVDVPELR----HMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVT 821
[45][TOP]
>UniRef100_B6QH89 RNA-dependent RNA polymerase, putative n=1 Tax=Penicillium marneffei
ATCC 18224 RepID=B6QH89_PENMQ
Length = 1207
Score = 57.0 bits (136), Expect = 6e-07
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ-------ITGDVLVYRNPGLHFGDIHI 237
R+ +PD L G +D TG LK E+ + N + + DVL+ R+P H GD+ +
Sbjct: 757 RILVPDGVTLYGIMDETGYLKEGEIFVPILNEETKRRDILVQDDVLITRSPAFHPGDVQL 816
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQVSISILVQ 60
+A V E +S + + F G R + +++GGD DGD++ + P+ + L +
Sbjct: 817 ANAVNVPE-DSPLRKLHNCVVFSQKGTRDLPSQLSGGDLDGDIFNIIYDPRFRLRRLAK 874
[46][TOP]
>UniRef100_Q71BB5 RNA-directed RNA polymerase-like protein n=1 Tax=Branchiostoma
floridae RepID=Q71BB5_BRAFL
Length = 1005
Score = 56.6 bits (135), Expect = 8e-07
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVCIIH---------ENGQITGDVLVYRNPGLHFGDIHIMHARYVE 216
+MGT+D TG+L+ +V I + + G V V +NP H GD+ A V
Sbjct: 606 MMGTMDETGKLQYGQVFIQYSREVDKPQADKVVHQGQVTVTKNPYFHPGDMRKFTAVDVP 665
Query: 215 ELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVS 96
EL H I FP GPR DE++G D DGD+Y+V+
Sbjct: 666 ELR----HMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVT 701
[47][TOP]
>UniRef100_A7EX56 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7EX56_SCLS1
Length = 1184
Score = 56.6 bits (135), Expect = 8e-07
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Frame = -2
Query: 425 IEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEV-CIIHENGQIT----GDVLVYRNPG 261
IE + R+ + ++L G +D TG LK E+ C E+G+ T V++ R P
Sbjct: 751 IELRTLKHKARIPVEKGYHLHGIMDETGILKEGEIYCCWLEDGKRTTLVQSSVVITRAPA 810
Query: 260 LHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
LH GD+ + +A V S + I F G R + +++GGD DGDLY+V P++
Sbjct: 811 LHPGDVQLANAVDVPS-NSPLKRLYNCICFSQKGARDLPSQLSGGDLDGDLYYVMFDPEM 869
Query: 80 SI 75
+
Sbjct: 870 KL 871
[48][TOP]
>UniRef100_B9HJH7 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH7_POPTR
Length = 1133
Score = 56.2 bits (134), Expect = 1e-06
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCI----------------IHENGQ-----ITGDVL 279
R+++P+ +MG +D T L+ +V + E G+ I G V+
Sbjct: 707 RIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVV 766
Query: 278 VYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
V +NP LH GD+ I+ A V L H + FP GPR +E +G D DGD+Y+V
Sbjct: 767 VAKNPCLHPGDLRILKAVDVPALH----HMVDCVVFPQKGPRPHPNECSGSDLDGDIYFV 822
Query: 98 SKHPQV 81
P++
Sbjct: 823 CWDPEL 828
[49][TOP]
>UniRef100_Q9NDH1 Protein F26A3.8, confirmed by transcript evidence n=1
Tax=Caenorhabditis elegans RepID=Q9NDH1_CAEEL
Length = 1601
Score = 56.2 bits (134), Expect = 1e-06
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 18/108 (16%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVCI------------------IHENGQITGDVLVYRNPGLHFGDI 243
++G VD TGRL+ ++ + +H + +TG VL+ +NP + GD+
Sbjct: 852 MLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTKNPCIVPGDV 911
Query: 242 HIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
I A + EL H + FP GPR DE+AG D DGD Y V
Sbjct: 912 RIFEAVDIPELH----HMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSV 955
[50][TOP]
>UniRef100_C3Z728 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma
floridae RepID=C3Z728_BRAFL
Length = 1207
Score = 56.2 bits (134), Expect = 1e-06
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVC------IIHENGQIT---GDVLVYRNPGLHFGDIHIMHARYVE 216
++G +D TG L+ +V I +++G++ GDV+V R P LH GD+ + A V
Sbjct: 599 MLGVLDETGTLEYGQVFVQYTEDIANQDGKVRVLEGDVVVTRTPCLHPGDVRKLQAIDVP 658
Query: 215 ELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
L H I FP GPR +E+ GGD DGD ++V+ P +
Sbjct: 659 ALY----HMVDVIVFPAKGPRPHPNEMTGGDLDGDDFFVTWLPDL 699
[51][TOP]
>UniRef100_Q2H4F6 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2H4F6_CHAGB
Length = 1572
Score = 56.2 bits (134), Expect = 1e-06
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENG-----------------------QITGD 285
RL + +L+G VD TG L+ + NG +TG
Sbjct: 822 RLVVDQGAFLLGCVDETGTLRGHSRATEGRNGITQNDLPQIFLQVPDRKDRGAYKVVTGI 881
Query: 284 VLVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLY 105
+V RNP LH GDI ++ A V EL H + + FP G R + +GGD DGD +
Sbjct: 882 CIVGRNPSLHPGDIRVVEAVDVPELR----HLRDVVVFPLKGDRDVPSMCSGGDLDGDDF 937
Query: 104 WVSKHPQV 81
+V P++
Sbjct: 938 FVIWDPKL 945
[52][TOP]
>UniRef100_C5FRX7 RNA-dependent RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FRX7_NANOT
Length = 1152
Score = 56.2 bits (134), Expect = 1e-06
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEV-CI-IHENGQ----ITGDVLVYRNPGLHFGDIHIM 234
R+ +P+ L G +D TG LK NE+ C+ + E+G+ + +V+V R+P LH GD+ ++
Sbjct: 706 RIRVPNAVTLYGIMDETGYLKENEIYCVFLSEDGRREILVRDNVVVTRSPALHPGDVQVV 765
Query: 233 HARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLY 105
+A V S + + F G R + ++GGD DGDLY
Sbjct: 766 NAVDVPA-NSPLRRLHNCVAFSQHGVRDLPSMLSGGDLDGDLY 807
[53][TOP]
>UniRef100_B0Y984 RNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus
A1163 RepID=B0Y984_ASPFC
Length = 809
Score = 56.2 bits (134), Expect = 1e-06
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITG---------DVLVYRNPGLHFGDI 243
R+ +P+ + G DP G L+ E C + + G +V+V RNP LH GD+
Sbjct: 390 RILVPESRLVFGVCDPRGVLQEGE-CFLRVTDDMNGGRPRTIVGCEVVVTRNPCLHPGDL 448
Query: 242 HIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
+ A EL H + I F G R AD+++GGD DGD ++V P +
Sbjct: 449 RKLKAVDRPELS----HLRDCIVFAVKGERPAADQMSGGDLDGDTFFVCWDPDL 498
[54][TOP]
>UniRef100_UPI000198295F PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI000198295F
Length = 1109
Score = 55.1 bits (131), Expect = 2e-06
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCII----------------------HENGQITGDV 282
R+++P+ +MG +D T L+ EV + H+N + G V
Sbjct: 694 RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKV 753
Query: 281 LVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYW 102
+V +NP LH GD+ I+ A V L H + FP G R DE +G D DGD+Y+
Sbjct: 754 VVAKNPCLHPGDVRILSAVDVPALH----HMVDCVVFPQKGMRPHPDECSGSDLDGDIYF 809
Query: 101 V 99
V
Sbjct: 810 V 810
[55][TOP]
>UniRef100_Q9ZRX5 RNA-directed RNA polymerase (Fragment) n=1 Tax=Arabidopsis thaliana
RepID=Q9ZRX5_ARATH
Length = 513
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ-------ITGDVLVYRNPGLHFGDIHI 237
R+++ +MG +D T L+ +V + + + ITG V+V +NP LH GD+ +
Sbjct: 226 RIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHSGDVRV 285
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
+ A V L H + FP G R +E +G D DGD+Y+V
Sbjct: 286 LQAVNVPAL----NHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 327
[56][TOP]
>UniRef100_Q8H1K9 RNA-dependent RNA polymerase 1 n=1 Tax=Arabidopsis thaliana
RepID=Q8H1K9_ARATH
Length = 1107
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ-------ITGDVLVYRNPGLHFGDIHI 237
R+++ +MG +D T L+ +V + + + ITG V+V +NP LH GD+ +
Sbjct: 704 RIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHSGDVRV 763
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
+ A V L H + FP G R +E +G D DGD+Y+V
Sbjct: 764 LQAVNVPAL----NHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 805
[57][TOP]
>UniRef100_C5XM68 Putative uncharacterized protein Sb03g022880 n=1 Tax=Sorghum bicolor
RepID=C5XM68_SORBI
Length = 1207
Score = 55.1 bits (131), Expect = 2e-06
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 21/121 (17%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEV-----------CII---------HENGQ-ITGDVL 279
R+++P +LMG +D G L+ + C++ ++N + I G ++
Sbjct: 769 RIFVPKGRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKHGPRFSSANKNAETIVGTIV 828
Query: 278 VYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
+ +NP LH GD+ I+ A V EL V + FP G R A+E +G D DGDLY+V
Sbjct: 829 MAKNPCLHPGDVRILEAVDVPELHHLVD----CLVFPKKGERPHANEASGSDLDGDLYFV 884
Query: 98 S 96
+
Sbjct: 885 T 885
[58][TOP]
>UniRef100_A7P3W3 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W3_VITVI
Length = 1076
Score = 55.1 bits (131), Expect = 2e-06
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCII----------------------HENGQITGDV 282
R+++P+ +MG +D T L+ EV + H+N + G V
Sbjct: 661 RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKV 720
Query: 281 LVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYW 102
+V +NP LH GD+ I+ A V L H + FP G R DE +G D DGD+Y+
Sbjct: 721 VVAKNPCLHPGDVRILSAVDVPALH----HMVDCVVFPQKGMRPHPDECSGSDLDGDIYF 776
Query: 101 V 99
V
Sbjct: 777 V 777
[59][TOP]
>UniRef100_A5ATA5 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5ATA5_VITVI
Length = 697
Score = 55.1 bits (131), Expect = 2e-06
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCII----------------------HENGQITGDV 282
R+++P+ +MG +D T L+ EV + H+N + G V
Sbjct: 238 RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKV 297
Query: 281 LVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYW 102
+V +NP LH GD+ I+ A V L H + FP G R DE +G D DGD+Y+
Sbjct: 298 VVAKNPCLHPGDVRILSAVDVPALH----HMVDCVVFPQKGMRPHPDECSGSDLDGDIYF 353
Query: 101 V 99
V
Sbjct: 354 V 354
[60][TOP]
>UniRef100_Q3SE68 RNA-dependent RNA polymerase n=2 Tax=Paramecium tetraurelia
RepID=Q3SE68_PARTE
Length = 1367
Score = 55.1 bits (131), Expect = 2e-06
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEV-CIIHENGQ--------ITGDVLVYRNPGLHFGDIHIMHARYVE 216
++G +D L+ NE+ C++ + I G+VLV RNP LH GDI ++A +
Sbjct: 869 VLGVIDEHNLLQPNEIYCLVQDENNDTQVEPENIQGEVLVTRNPCLHPGDIKKLNAISTQ 928
Query: 215 ELESYVGHSK------YAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
E+ G + FP G S+ +IAGGD DGDLY++
Sbjct: 929 EILKRNGSKNPYSQLINCLVFPACG-NSLPCQIAGGDLDGDLYFI 972
[61][TOP]
>UniRef100_A8WMP9 C. briggsae CBR-EGO-1 protein (Fragment) n=1 Tax=Caenorhabditis
briggsae RepID=A8WMP9_CAEBR
Length = 1631
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVCIIH-------------ENGQITGDVLVYRNPGLHFGDIHIMHA 228
++G VD TGRL+ ++ + + +TG VL+ +NP + GD+ I A
Sbjct: 884 MLGVVDETGRLQYGQIFVQYTRNLALKLPPKSASRSVLTGTVLLTKNPCIVAGDVRIFEA 943
Query: 227 RYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLY 105
+ EL H + FP GPR DE+AG D DGD Y
Sbjct: 944 VDIPELH----HMCDVVVFPQHGPRPHPDEMAGSDLDGDEY 980
[62][TOP]
>UniRef100_Q8LHH9 Probable RNA-dependent RNA polymerase SHL2 n=1 Tax=Oryza sativa
Japonica Group RepID=SHL2_ORYSJ
Length = 1218
Score = 55.1 bits (131), Expect = 2e-06
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 22/126 (17%)
Frame = -2
Query: 407 LRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIH-----------ENGQ-----------I 294
L R+++P +LMG +D G L+ + C I ++G I
Sbjct: 776 LEKARIFVPKGRWLMGCLDELGVLEQGQ-CFIRATVPSLNSYFVKHGSRFSSTDKNTEVI 834
Query: 293 TGDVLVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDG 114
G V++ +NP LH GD+ I+ A V EL V + FP G R A+E +G D DG
Sbjct: 835 LGTVVIAKNPCLHPGDVRILEAVDVPELHHLVD----CLVFPQKGERPHANEASGSDLDG 890
Query: 113 DLYWVS 96
DLY+V+
Sbjct: 891 DLYFVT 896
[63][TOP]
>UniRef100_Q9BH56 Protein M01G12.12, partially confirmed by transcript evidence n=1
Tax=Caenorhabditis elegans RepID=Q9BH56_CAEEL
Length = 1579
Score = 54.7 bits (130), Expect = 3e-06
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 25/135 (18%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVCIIHENGQ------------------ITGDVLVYRNPGLHFGDI 243
++G VD TG L+ +V + + +TG VL+ +NPG+ GD+
Sbjct: 833 MLGVVDETGILQYGQVFVQYTKNHRNILPPRDSNRKVLGSEIVTGTVLLTKNPGIVPGDV 892
Query: 242 HIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLY---WVSK----HPQ 84
I A + EL H + FP GPR DE+AG D DGD Y W K +
Sbjct: 893 RIFEAVDIPELH----HLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLLLERNE 948
Query: 83 VSISILVQKSSCTYQ 39
+ V+K+ TY+
Sbjct: 949 EAFDFAVEKNLQTYE 963
[64][TOP]
>UniRef100_Q93593 Protein F26A3.3, confirmed by transcript evidence n=1
Tax=Caenorhabditis elegans RepID=Q93593_CAEEL
Length = 1632
Score = 54.7 bits (130), Expect = 3e-06
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVCIIHENGQ-------------ITGDVLVYRNPGLHFGDIHIMHA 228
++G VD TGRL+ ++ + + +TG VL+ +NP + GD+ I A
Sbjct: 884 MLGVVDETGRLQYGQIFVQYTKNLALKLPPKNAARQVLTGTVLLTKNPCIVAGDVRIFEA 943
Query: 227 RYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLY 105
+ EL H + FP GPR DE+AG D DGD Y
Sbjct: 944 VDIPELH----HMCDVVVFPQHGPRPHPDEMAGSDLDGDEY 980
[65][TOP]
>UniRef100_Q9LQV2 F10B6.19 n=1 Tax=Arabidopsis thaliana RepID=Q9LQV2_ARATH
Length = 1107
Score = 54.3 bits (129), Expect = 4e-06
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ-------ITGDVLVYRNPGLHFGDIHI 237
R+++ +MG +D T L+ +V + + + ITG V+V +NP LH GD+ +
Sbjct: 704 RIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRV 763
Query: 236 MHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
+ A V L H + FP G R +E +G D DGD+Y+V
Sbjct: 764 LQAVNVPAL----NHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 805
[66][TOP]
>UniRef100_B4FZU3 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FZU3_MAIZE
Length = 552
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 21/121 (17%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEV-----------CIIHENGQIT----------GDVL 279
R+++P +LMG +D G L+ + C++ +++ G ++
Sbjct: 114 RIFVPKGRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETILGTIV 173
Query: 278 VYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
+ +NP LH GD+ I+ A V EL V + FP G R A+E +G D DGDLY+V
Sbjct: 174 MAKNPCLHPGDVRILEAVDVPELHHLVD----CLVFPKKGERPHANEASGSDLDGDLYFV 229
Query: 98 S 96
+
Sbjct: 230 T 230
[67][TOP]
>UniRef100_B3SND7 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B3SND7_GOSHI
Length = 1110
Score = 54.3 bits (129), Expect = 4e-06
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ------ITGDVLVYRNPGLHFGDIHIM 234
R+++ +MG +D T L +V + + + G V+V +NP LH GD+ ++
Sbjct: 700 RIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERRFIVQGKVIVAKNPCLHPGDVRVL 759
Query: 233 HARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
A V +L H + FP G R +E +G D DGD+Y+V P++
Sbjct: 760 RAVNVPDLH----HMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPEL 806
[68][TOP]
>UniRef100_B2B9K0 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B2B9K0_GOSHI
Length = 1110
Score = 54.3 bits (129), Expect = 4e-06
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQ------ITGDVLVYRNPGLHFGDIHIM 234
R+++ +MG +D T L +V + + + G V+V +NP LH GD+ ++
Sbjct: 700 RIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERRFIVQGKVIVAKNPCLHPGDVRVL 759
Query: 233 HARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
A V +L H + FP G R +E +G D DGD+Y+V P++
Sbjct: 760 RAVNVPDLH----HMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPEL 806
[69][TOP]
>UniRef100_Q8X1C2 Putative RNA-dependent RNA polymerase (Fragment) n=1 Tax=Phomopsis
sp. CMW 5588 RepID=Q8X1C2_9PEZI
Length = 1122
Score = 54.3 bits (129), Expect = 4e-06
Identities = 30/66 (45%), Positives = 37/66 (56%)
Frame = -2
Query: 296 ITGDVLVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFD 117
ITG +V RNP LH GD+ ++ A V EL H K + FP G R I +GGD D
Sbjct: 565 ITGICVVGRNPSLHPGDVRVVEAVDVPELR----HLKNVVVFPKTGDRDIPSMCSGGDMD 620
Query: 116 GDLYWV 99
GD Y+V
Sbjct: 621 GDDYFV 626
[70][TOP]
>UniRef100_A6SSI0 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
B05.10 RepID=A6SSI0_BOTFB
Length = 1080
Score = 54.3 bits (129), Expect = 4e-06
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Frame = -2
Query: 374 FYLMGTVDPTGRLKANEV-CIIHENGQIT----GDVLVYRNPGLHFGDIHIMHARYVEEL 210
++L G +D TG L+ E+ C E+G+ T +V++ R P LH GDI + +A V
Sbjct: 635 YHLHGIMDETGILEEGEIYCCWIEDGKRTTLVGSNVVITRAPALHPGDIQLANAVNVPS- 693
Query: 209 ESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
+S + + F G R + +++GGD DGDLY+V
Sbjct: 694 DSPLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYV 730
[71][TOP]
>UniRef100_A2XUF4 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XUF4_ORYSI
Length = 1136
Score = 53.9 bits (128), Expect = 5e-06
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 20/120 (16%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCI-----------------IHENGQ---ITGDVLV 276
++++P L+G +D TG L+ +V I +++G+ + G V +
Sbjct: 718 KIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAI 777
Query: 275 YRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVS 96
+NP LH GDI ++ A Y +L V + FP G R +E +GGD DGDLY+++
Sbjct: 778 TKNPCLHPGDIRVLEAIYDPDLVGMVD----CLVFPQRGERPHPNECSGGDLDGDLYFIT 833
[72][TOP]
>UniRef100_Q8TGV4 Putative RNA-dependent RNA polymerase RDP-1 n=1 Tax=Diaporthe
perjuncta RepID=Q8TGV4_9PEZI
Length = 1484
Score = 53.9 bits (128), Expect = 5e-06
Identities = 29/66 (43%), Positives = 37/66 (56%)
Frame = -2
Query: 296 ITGDVLVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFD 117
ITG +V RNP LH GD+ ++ A V EL H K + FP G R + +GGD D
Sbjct: 945 ITGICVVGRNPALHPGDVRVVEAVDVPELR----HLKNVVVFPKTGDRDVPSMCSGGDMD 1000
Query: 116 GDLYWV 99
GD Y+V
Sbjct: 1001 GDDYFV 1006
[73][TOP]
>UniRef100_Q7XM31 Probable RNA-dependent RNA polymerase 2 n=1 Tax=Oryza sativa Japonica
Group RepID=RDR2_ORYSJ
Length = 1136
Score = 53.9 bits (128), Expect = 5e-06
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 20/120 (16%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCI-----------------IHENGQ---ITGDVLV 276
++++P L+G +D TG L+ +V I +++G+ + G V +
Sbjct: 718 KIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAI 777
Query: 275 YRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVS 96
+NP LH GDI ++ A Y +L V + FP G R +E +GGD DGDLY+++
Sbjct: 778 TKNPCLHPGDIRVLEAIYDPDLVGMVD----CLVFPQRGERPHPNECSGGDLDGDLYFIT 833
[74][TOP]
>UniRef100_A9CRC9 RNA-dependent RNA polymerase 6 n=1 Tax=Nicotiana tabacum
RepID=A9CRC9_TOBAC
Length = 1197
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCI--------------------IHENGQIT-GDVL 279
R+++P +LMG +D G L+ + I I +N Q+ G V+
Sbjct: 757 RIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVV 816
Query: 278 VYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
+ +NP LH GD+ I+ A V L H + FP G R ++E +G D DGDLY+V
Sbjct: 817 IAKNPCLHPGDVRILEAVDVPSLS----HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFV 872
Query: 98 S 96
+
Sbjct: 873 T 873
[75][TOP]
>UniRef100_A8XVP2 C. briggsae CBR-RRF-1 protein n=1 Tax=Caenorhabditis briggsae AF16
RepID=A8XVP2_CAEBR
Length = 1780
Score = 53.5 bits (127), Expect = 7e-06
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Frame = -2
Query: 413 KRLRGGRLYLPDCF--YLMGTVDPTGRLKANEVCIIHENGQ------------------I 294
K+LR ++ +P ++G VD TG+L+ ++ + + +
Sbjct: 982 KQLRKEQIQIPKELGRSMLGVVDETGQLQYGQIFVQYTQNAAKKLPMRGPNMTVPDAKIV 1041
Query: 293 TGDVLVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDG 114
TG VLV +NP + GD+ + A + EL H + FP GPR DE+AG D DG
Sbjct: 1042 TGTVLVTKNPCIVTGDVRVFEAVDIPELH----HMCDVVVFPQHGPRPHPDEMAGSDLDG 1097
Query: 113 DLY 105
D Y
Sbjct: 1098 DEY 1100
[76][TOP]
>UniRef100_A8PJI0 RNA dependent RNA polymerase family protein n=1 Tax=Brugia malayi
RepID=A8PJI0_BRUMA
Length = 1542
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Frame = -2
Query: 416 KKRLRGGRLYLPDCF--YLMGTVDPTGRLKANEVCIIHENGQ---------ITGDVLVYR 270
K L +++LP + G +D TG L+ +V + + + TG V+V +
Sbjct: 828 KLHLSKSKIFLPCSMGRTMYGVIDDTGLLQYGQVFVQYSSSMQYVSAKKIVYTGSVMVTK 887
Query: 269 NPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
NP GD+ + A Y + L H I FP GPR +DE+AG D DGD Y V
Sbjct: 888 NPCHVAGDVRMFEAVYQDALL----HLCDVIVFPRYGPRPHSDEMAGSDLDGDEYTV 940
[77][TOP]
>UniRef100_A7SA10 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis
RepID=A7SA10_NEMVE
Length = 523
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCI----------------IHENGQITGDVLVYRNP 264
+L L +MG VD TG L+ +V + + + + G V+V RNP
Sbjct: 226 QLPLESARLMMGVVDETGVLEYGQVFVQYSAASNDPRSDKEFELSDKRVLKGPVVVTRNP 285
Query: 263 GLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
LH GD+ + A +L V + FP G R E+AGGD DGDLY+V
Sbjct: 286 CLHPGDVRRLVAIDTPKLRHLVD----CVVFPKTGQRPHPSEMAGGDLDGDLYFV 336
[78][TOP]
>UniRef100_UPI0001868CE3 hypothetical protein BRAFLDRAFT_101874 n=1 Tax=Branchiostoma floridae
RepID=UPI0001868CE3
Length = 1415
Score = 53.1 bits (126), Expect = 9e-06
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Frame = -2
Query: 368 LMGTVDPTGRLKANEVC------IIHENGQIT---GDVLVYRNPGLHFGDIHIMHARYVE 216
++G +D T L+ +V I +++G++ G+V+V R P LH GD+ + A V
Sbjct: 735 MLGVLDETSTLEYGQVFVQYTEDIANQDGKVRVLEGEVVVTRTPCLHPGDVRKLQAIDVP 794
Query: 215 ELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQV 81
L H I FP GPR +E+ GGD DGD ++V+ P +
Sbjct: 795 ALH----HMVDVIVFPAKGPRPHPNEMTGGDLDGDDFFVTWLPDL 835
[79][TOP]
>UniRef100_Q647I4 Putative RNA-dependent RNA polymerase RdRP2 n=1 Tax=Nicotiana
benthamiana RepID=Q647I4_NICBE
Length = 1120
Score = 53.1 bits (126), Expect = 9e-06
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = -2
Query: 296 ITGDVLVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFD 117
+ G+V+V +NP LH GD+ ++ A Y LE I FP G R +E +GGD D
Sbjct: 770 VRGNVVVTKNPCLHPGDVRVLEAVYEVALEEKAWVD--CIIFPQKGERPHPNECSGGDLD 827
Query: 116 GDLYWVS 96
GDLY++S
Sbjct: 828 GDLYFIS 834
[80][TOP]
>UniRef100_B5BLP6 RNA-dependent RNA polymerase 6 n=1 Tax=Nicotiana tabacum
RepID=B5BLP6_TOBAC
Length = 1197
Score = 53.1 bits (126), Expect = 9e-06
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCI--------------------IHENGQIT-GDVL 279
R+++P +LMG +D G L+ + I I +N Q+ G V+
Sbjct: 757 RIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVV 816
Query: 278 VYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWV 99
+ +NP LH GD+ I+ A V L H + FP G R ++E +G D DGDLY+V
Sbjct: 817 IAKNPCLHPGDVRILEAVDVPSLS----HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFV 872
Query: 98 S 96
+
Sbjct: 873 T 873
[81][TOP]
>UniRef100_A5AM83 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5AM83_VITVI
Length = 654
Score = 53.1 bits (126), Expect = 9e-06
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Frame = -2
Query: 395 RLYLPDCFYLMGTVDPTGRLKANEVCII----------------------HENGQITGDV 282
R+++P+ +MG +D T L+ EV + H+N + G +
Sbjct: 238 RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKI 297
Query: 281 LVYRNPGLHFGDIHIMHARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYW 102
+V +NP LH GD+ ++ A V L H + FP G R +E +G D DGD+Y+
Sbjct: 298 VVAKNPCLHPGDVRVLXAVNVPTLH----HMVDCVVFPQKGKRPHPNECSGSDLDGDIYF 353
Query: 101 V 99
V
Sbjct: 354 V 354