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[1][TOP]
>UniRef100_B8YLY7 Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA
Length = 1305
Score = 110 bits (276), Expect(2) = 4e-47
Identities = 54/66 (81%), Positives = 62/66 (93%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIKNN 305
LYT RMSESTSM DHI+++NT+FAQLSAS+FTIGENERAE+LL+SLPDSYDQLVINI NN
Sbjct: 102 LYTFRMSESTSMPDHINNLNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLVINITNN 161
Query: 304 NIVNHL 287
NIV+ L
Sbjct: 162 NIVDRL 167
Score = 101 bits (251), Expect(2) = 4e-47
Identities = 52/84 (61%), Positives = 60/84 (71%), Gaps = 14/84 (16%)
Frame = -3
Query: 287 TFNDVVGGILEEDSQR*NKEDR*DSSKPMEALTMTR--------------GRSKSRKKIN 150
+FNDV G ILEE+S+R NKEDR DSSK MEALT+TR GRS SR+K N
Sbjct: 168 SFNDVAGAILEEESRRKNKEDRQDSSKQMEALTVTRGRSTERGPSGSQNHGRSTSRRKTN 227
Query: 149 LKCYHCGQR*HLKKDCWFNKKSSD 78
LKCY+CG+R HLKKDCW NKKS +
Sbjct: 228 LKCYNCGKRGHLKKDCWSNKKSGE 251
[2][TOP]
>UniRef100_B8YLY5 Gag-Pol polyprotein n=1 Tax=Medicago truncatula RepID=B8YLY5_MEDTR
Length = 1305
Score = 101 bits (251), Expect(2) = 1e-40
Identities = 49/66 (74%), Positives = 59/66 (89%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIKNN 305
LYTLRM ESTS++DHI+ +NTLF+QL+AS+F I ENERAELLL+SLPDSYDQL+INI NN
Sbjct: 102 LYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNN 161
Query: 304 NIVNHL 287
NI + L
Sbjct: 162 NIADTL 167
Score = 89.0 bits (219), Expect(2) = 1e-40
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 14/83 (16%)
Frame = -3
Query: 284 FNDVVGGILEEDSQR*NKEDR*DSSKPMEALTMTR--------------GRSKSRKKINL 147
F+DV G ILEE+S+R NKE+R +SSK EALTMTR GRSKSR+K N+
Sbjct: 169 FDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNI 228
Query: 146 KCYHCGQR*HLKKDCWFNKKSSD 78
KCY CG + H+KK+CW NKK+ +
Sbjct: 229 KCYGCGMKGHVKKECWNNKKNGE 251
[3][TOP]
>UniRef100_B8YLY4 Gag-Pol polyprotein n=1 Tax=Medicago truncatula RepID=B8YLY4_MEDTR
Length = 1305
Score = 101 bits (251), Expect(2) = 1e-39
Identities = 49/66 (74%), Positives = 59/66 (89%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIKNN 305
LYTLRM ESTS++DHI+ +NTLF+QL+AS+F I ENERAELLL+SLPDSYDQL+INI NN
Sbjct: 102 LYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNN 161
Query: 304 NIVNHL 287
NI + L
Sbjct: 162 NIADTL 167
Score = 85.5 bits (210), Expect(2) = 1e-39
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 14/83 (16%)
Frame = -3
Query: 284 FNDVVGGILEEDSQR*NKEDR*DSSKPMEALTMTR--------------GRSKSRKKINL 147
F+DV G ILEE+S+R NKE+R +SSK EALTMTR GRSKSR+K N+
Sbjct: 169 FDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNI 228
Query: 146 KCYHCGQR*HLKKDCWFNKKSSD 78
KCY CG + H+KK+CW KK+ +
Sbjct: 229 KCYGCGMKGHVKKECWNIKKNGE 251
[4][TOP]
>UniRef100_B8YLY3 Gag-Pol polyprotein n=1 Tax=Medicago truncatula RepID=B8YLY3_MEDTR
Length = 1305
Score = 101 bits (251), Expect(2) = 1e-39
Identities = 49/66 (74%), Positives = 59/66 (89%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIKNN 305
LYTLRM ESTS++DHI+ +NTLF+QL+AS+F I ENERAELLL+SLPDSYDQL+INI NN
Sbjct: 102 LYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNN 161
Query: 304 NIVNHL 287
NI + L
Sbjct: 162 NITDTL 167
Score = 85.5 bits (210), Expect(2) = 1e-39
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 14/83 (16%)
Frame = -3
Query: 284 FNDVVGGILEEDSQR*NKEDR*DSSKPMEALTMTR--------------GRSKSRKKINL 147
F+DV G ILEE+S+R NKE+R +SSK EALTMTR GRSKSR+K N+
Sbjct: 169 FDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNI 228
Query: 146 KCYHCGQR*HLKKDCWFNKKSSD 78
KCY CG + H+KK+CW KK+ +
Sbjct: 229 KCYGCGMKGHVKKECWNIKKNGE 251
[5][TOP]
>UniRef100_B8YLY6 Gag-Pol polyprotein n=1 Tax=Medicago truncatula RepID=B8YLY6_MEDTR
Length = 1305
Score = 98.2 bits (243), Expect(2) = 1e-38
Identities = 47/66 (71%), Positives = 59/66 (89%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIKNN 305
LYTL+M ESTS++DHI+ +NTLF+QL+AS+F I +NERAELLL+SLPDSYDQL+INI NN
Sbjct: 102 LYTLQMGESTSVTDHINTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNN 161
Query: 304 NIVNHL 287
NI + L
Sbjct: 162 NIADTL 167
Score = 85.5 bits (210), Expect(2) = 1e-38
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 14/83 (16%)
Frame = -3
Query: 284 FNDVVGGILEEDSQR*NKEDR*DSSKPMEALTMTR--------------GRSKSRKKINL 147
F+DV G ILEE+S+R NKE+R +SSK EALTMTR GRSKSR+K N+
Sbjct: 169 FDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNI 228
Query: 146 KCYHCGQR*HLKKDCWFNKKSSD 78
KCY CG + H+KK+CW KK+ +
Sbjct: 229 KCYGCGMKGHVKKECWNIKKNGE 251
[6][TOP]
>UniRef100_Q6BCY1 Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA
Length = 1298
Score = 85.1 bits (209), Expect(2) = 4e-30
Identities = 40/66 (60%), Positives = 56/66 (84%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIKNN 305
LYTLRMSESTS+++H++ +NTLF+QL++ + I ERAELLL+SLPDSYDQL+IN+ NN
Sbjct: 103 LYTLRMSESTSVTEHLNTLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNN 162
Query: 304 NIVNHL 287
+ ++L
Sbjct: 163 ILTDYL 168
Score = 70.1 bits (170), Expect(2) = 4e-30
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 11/73 (15%)
Frame = -3
Query: 284 FNDVVGGILEEDSQR*NKEDR*DSSKPMEALTMTRGRSKSR-----------KKINLKCY 138
F+DV +LEE+S+R NKEDR + + EALT+ RGRS R K NL CY
Sbjct: 170 FDDVAAAVLEEESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGRGRSKSSKKNLTCY 229
Query: 137 HCGQR*HLKKDCW 99
+CG++ HLKKDCW
Sbjct: 230 NCGKKGHLKKDCW 242
[7][TOP]
>UniRef100_P10978 Endonuclease n=1 Tax=Nicotiana tabacum RepID=POLX_TOBAC
Length = 1328
Score = 50.1 bits (118), Expect(2) = 4e-09
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIKNN 305
LY L MSE T+ H++ N L QL+ I E ++A LLL SLP SYD L I +
Sbjct: 107 LYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHG 166
Query: 304 NIVNHL----PLMMLSEVFLKK 251
L ++L+E KK
Sbjct: 167 KTTIELKDVTSALLLNEKMRKK 188
Score = 34.3 bits (77), Expect(2) = 4e-09
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 182 RGRSKSRKKINLK-CYHCGQR*HLKKDC 102
RG+SK+R K ++ CY+C Q H K+DC
Sbjct: 218 RGKSKNRSKSRVRNCYNCNQPGHFKRDC 245
[8][TOP]
>UniRef100_Q9AU17 Polyprotein-like n=1 Tax=Solanum chilense RepID=Q9AU17_SOLCI
Length = 1328
Score = 48.1 bits (113), Expect(2) = 6e-08
Identities = 29/86 (33%), Positives = 46/86 (53%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIKNN 305
LYTL M E T+ H++ +N L QL+ I E ++ +LL SLP SYD L +
Sbjct: 108 LYTLHMDEGTNFLSHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTL-----ST 162
Query: 304 NIVNHLPLMMLSEVFLKKIPSDKIRK 227
I++ + L +V + ++K+RK
Sbjct: 163 TILHGKDSIQLKDVTSALLLNEKMRK 188
Score = 32.0 bits (71), Expect(2) = 6e-08
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 182 RGRSKSRKKINLK-CYHCGQR*HLKKDC 102
RG+SK R K + CY+C Q H K+DC
Sbjct: 219 RGKSKVRSKSKARNCYNCDQPGHFKRDC 246
[9][TOP]
>UniRef100_A7QG92 Chromosome undetermined scaffold_91, whole genome shotgun sequence
n=1 Tax=Vitis vinifera RepID=A7QG92_VITVI
Length = 788
Score = 44.3 bits (103), Expect(2) = 7e-07
Identities = 19/60 (31%), Positives = 39/60 (65%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIKNN 305
L+ L+M+E+ S++ H++ NT+ QLS+ + RA ++L SLP+S++ + + + N+
Sbjct: 390 LFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNS 449
Score = 32.3 bits (72), Expect(2) = 7e-07
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Frame = -3
Query: 284 FNDVVGGILEEDSQR*NKEDR*DSSKPMEALTM-TRGR--------------------SK 168
+ND+ IL E+ +R D ++S AL + TRGR SK
Sbjct: 457 YNDIRDLILAEEIRR---RDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNISK 513
Query: 167 SRKKINLKCYHCGQR*HLKKDCWFNKKSSD 78
SR ++C++CG+ H K+ C KK ++
Sbjct: 514 SRSGQQVQCWNCGKTGHFKRQCKSPKKKNE 543
[10][TOP]
>UniRef100_Q2QVJ2 Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza
sativa Japonica Group RepID=Q2QVJ2_ORYSJ
Length = 424
Score = 42.0 bits (97), Expect(2) = 1e-06
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLV 323
LY L+M E + + H+D N L LS + + + ++A +LL SLP SY+ +V
Sbjct: 108 LYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVV 161
Score = 33.9 bits (76), Expect(2) = 1e-06
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = -3
Query: 278 DVVGGILEEDSQR*NKEDR*DSSKPMEALTMTR-----GRSKSRKKINLKCYHCGQR*HL 114
+++ +L D +R K + ++S+ L + G SKS++K +CY C + H+
Sbjct: 174 EIISSLLARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEK-GARCYKCHEFGHI 232
Query: 113 KKDCWFNKKSSD 78
+++C KK D
Sbjct: 233 RRNCPLLKKRKD 244
[11][TOP]
>UniRef100_A7PHV1 Chromosome chr13 scaffold_17, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PHV1_VITVI
Length = 397
Score = 38.5 bits (88), Expect(2) = 6e-06
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = -3
Query: 182 RGRSKSRKKINLKCYHCGQR*HLKKDCWFNKKSSDVT 72
+ RSKS K+ +++CY C ++ H+K+DC KK V+
Sbjct: 123 KSRSKSNKRKDIQCYKCRKKGHMKRDCPKKKKRGSVS 159
Score = 35.0 bits (79), Expect(2) = 6e-06
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIKNN 305
LY L+M E + +S HI+ N + + L + ++ +LL SLP S ++ K N
Sbjct: 46 LYGLKMVEGSDLSQHINVFNQIISDLKRIDVKFENKDKTLMLLNSLPASSTYEILRKKAN 105
Query: 304 N 302
+
Sbjct: 106 D 106
[12][TOP]
>UniRef100_Q8H023 Putative retrovirus-related pol polyprotein n=1 Tax=Oryza sativa
Japonica Group RepID=Q8H023_ORYSJ
Length = 556
Score = 40.8 bits (94), Expect(2) = 9e-06
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINI 314
LY L+M E + + H+D N L LS + + + ++A +LL SLP S++ +V +
Sbjct: 239 LYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSFEHVVTTL 295
Score = 32.0 bits (71), Expect(2) = 9e-06
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = -3
Query: 278 DVVGGILEEDSQR*NKEDR*DSSKPMEALTMTR-----GRSKSRKKINLKCYHCGQR*HL 114
+++ +L D +R K + ++S+ L + G SKS++K +CY C + H+
Sbjct: 306 EIISSLLARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEK-GARCYKCHEFGHI 364
Query: 113 KKDCWFNKK 87
+++C KK
Sbjct: 365 RRNCPLLKK 373
[13][TOP]
>UniRef100_Q2QP15 Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza
sativa Japonica Group RepID=Q2QP15_ORYSJ
Length = 425
Score = 41.2 bits (95), Expect(2) = 9e-06
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -1
Query: 484 LYTLRMSESTSMSDHIDHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINI 314
LY L+M E + + H+D N L LS + + + + A +LL SLP SY+ +V +
Sbjct: 108 LYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTL 164
Score = 31.6 bits (70), Expect(2) = 9e-06
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -3
Query: 272 VGGILEEDSQR*NKEDR*DSSKPMEALTMTR-----GRSKSRKKINLKCYHCGQR*HLKK 108
+ +L D +R NK + ++S+ L + G SKS+ K +CY C + H+++
Sbjct: 177 ISSLLARDLRRSNKNEAMEASQAESLLVKAKHDHEAGVSKSKDK-GARCYKCHEFGHIRR 235
Query: 107 DCWFNKK 87
+C KK
Sbjct: 236 NCPLLKK 242