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[1][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
           DNA-directed RNA polymerase/ transcription factor n=1
           Tax=Vitis vinifera RepID=UPI000198388B
          Length = 578

 Score =  237 bits (605), Expect = 3e-61
 Identities = 118/133 (88%), Positives = 130/133 (97%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVAEATGLSMKRL+AVLLTPKAPRSL+QKIGINQNLKPSEVIADP+AETAEE LIKQFM
Sbjct: 446 EEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFM 505

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLEKVL+SLNPREKQVIRWR+G++DGR KTLQEIGE++GVSRERIRQIESCAFRKLKN
Sbjct: 506 REDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKN 565

Query: 118 KKRNKHLQQYLVS 80
           K+R KHLQQYLVS
Sbjct: 566 KRRTKHLQQYLVS 578

[2][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PSL8_VITVI
          Length = 235

 Score =  237 bits (605), Expect = 3e-61
 Identities = 118/133 (88%), Positives = 130/133 (97%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVAEATGLSMKRL+AVLLTPKAPRSL+QKIGINQNLKPSEVIADP+AETAEE LIKQFM
Sbjct: 103 EEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFM 162

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLEKVL+SLNPREKQVIRWR+G++DGR KTLQEIGE++GVSRERIRQIESCAFRKLKN
Sbjct: 163 REDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKN 222

Query: 118 KKRNKHLQQYLVS 80
           K+R KHLQQYLVS
Sbjct: 223 KRRTKHLQQYLVS 235

[3][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
          Length = 572

 Score =  223 bits (569), Expect = 4e-57
 Identities = 111/133 (83%), Positives = 125/133 (93%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AEATGLSMKRL AVLL+PK PRSL+QKIG+NQNLKPSEVIADPEA T+E+ LIK+FM
Sbjct: 438 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 497

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DL+KVLDSL  REKQVIRWRFGM+DGRMKTLQEIGEM+GVSRER+RQIES AFRKLKN
Sbjct: 498 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 557

Query: 118 KKRNKHLQQYLVS 80
           KKRN HLQQYLV+
Sbjct: 558 KKRNNHLQQYLVA 570

[4][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
           Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
          Length = 572

 Score =  223 bits (567), Expect = 7e-57
 Identities = 111/133 (83%), Positives = 124/133 (93%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AEATGLSMKRL AVLL+PK PRSL+QKIG+NQNLKPSEVIADPEA T E+ LIK+FM
Sbjct: 438 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFM 497

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DL+KVLDSL  REKQVIRWRFGM+DGRMKTLQEIGEM+GVSRER+RQIES AFRKLKN
Sbjct: 498 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 557

Query: 118 KKRNKHLQQYLVS 80
           KKRN HLQQYLV+
Sbjct: 558 KKRNNHLQQYLVA 570

[5][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
           communis RepID=B9SDA3_RICCO
          Length = 569

 Score =  222 bits (566), Expect = 9e-57
 Identities = 111/133 (83%), Positives = 126/133 (94%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVAEA GLSMKRLSAVLLTPKAPRSL+QKIG+N +LKPSEVIADPEAETAEE L+KQFM
Sbjct: 437 EEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFM 496

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+DLEKVL++LNPRE QV+RWRFG++DGRMKTLQEIGE++GVSRERIRQIES AFRKLKN
Sbjct: 497 KQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKN 556

Query: 118 KKRNKHLQQYLVS 80
           KKR K L+QYL++
Sbjct: 557 KKRTKQLKQYLLA 569

[6][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
          Length = 574

 Score =  222 bits (565), Expect = 1e-56
 Identities = 110/133 (82%), Positives = 125/133 (93%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AEATGLSMKRL AVLL+PK PRSL++KIG+NQNLKPSEVIADPEA T+E+ LIK+FM
Sbjct: 440 EEIAEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 499

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DL+KVLDSL  REKQVIRWRFGM+DGRMKTLQEIGEM+GVSRER+RQIES AFRKLKN
Sbjct: 500 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 559

Query: 118 KKRNKHLQQYLVS 80
           KKRN HLQQYLV+
Sbjct: 560 KKRNNHLQQYLVA 572

[7][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
          Length = 575

 Score =  221 bits (562), Expect = 3e-56
 Identities = 110/133 (82%), Positives = 125/133 (93%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVAEATGLSMKRL AVLL+PK PRSL+QKIGIN NLKPSEVIADPEAET+E+ L+KQFM
Sbjct: 438 EEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQFM 497

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DL+KVLDSL+ REKQVIRWRFGM+DGRMKTLQEIGE +GVSRER+RQI++ AFRKLKN
Sbjct: 498 RQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQIDTSAFRKLKN 557

Query: 118 KKRNKHLQQYLVS 80
           KKRN HLQQYLV+
Sbjct: 558 KKRNSHLQQYLVA 570

[8][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
          Length = 575

 Score =  215 bits (548), Expect = 1e-54
 Identities = 107/131 (81%), Positives = 123/131 (93%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVAEATGLSMKRL+AVL+TPKAPRSL+QKIG N NLKPSEVIADPEAETAE+ L KQFM
Sbjct: 443 EEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFM 502

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLEKVLD+L+ REKQVIRWRFG++DGRMKTLQEIGE++GVSRERIRQIES AFRKL+N
Sbjct: 503 RQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLQN 562

Query: 118 KKRNKHLQQYL 86
           KK+  +LQQY+
Sbjct: 563 KKKTINLQQYM 573

[9][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
          Length = 564

 Score =  213 bits (543), Expect = 4e-54
 Identities = 108/133 (81%), Positives = 122/133 (91%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           +EVAEATGLSMKRLSAVLLTPKAPRSL+QK+G N +LK SEV ADPEAETAE+ L+K+FM
Sbjct: 432 KEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFM 491

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KKDLE+VL+SL+PRE QVIRWRFGM+DGRMKTLQEIGE++GVSRERIRQIE  AFRKLKN
Sbjct: 492 KKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLKN 551

Query: 118 KKRNKHLQQYLVS 80
           K R K L+QYLVS
Sbjct: 552 KNRTKQLRQYLVS 564

[10][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
          Length = 567

 Score =  206 bits (525), Expect = 5e-52
 Identities = 103/133 (77%), Positives = 119/133 (89%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           +EVAEA GLSMKRLSAVLLTPKAPRSL+QK+G N +LK SEV ADPEAETAE+ L+K+FM
Sbjct: 435 KEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFM 494

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KKDL KVL SL+PRE QV+RWRFGM+DGRMKTLQEIGE++GVSRER+RQIE  AFRKLKN
Sbjct: 495 KKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRKLKN 554

Query: 118 KKRNKHLQQYLVS 80
           K R K L+QY+V+
Sbjct: 555 KNRTKQLRQYMVA 567

[11][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
           bicolor RepID=C6JRK5_SORBI
          Length = 238

 Score =  140 bits (353), Expect = 4e-32
 Identities = 76/132 (57%), Positives = 98/132 (74%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG+ +KR+ A +  PK   SL+ KIG + ++   EV ADP AETAEE L +  M
Sbjct: 103 EEIALDTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSM 161

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KKD+ K LD+L  REKQV+  RFG++D R++TLQEIG ++GVSRERIRQIES AFRKL++
Sbjct: 162 KKDVHKALDTLTTREKQVVVLRFGLEDDRIRTLQEIGNIMGVSRERIRQIESGAFRKLRS 221

Query: 118 KKRNKHLQQYLV 83
           KKR K L+ YLV
Sbjct: 222 KKRVKALKDYLV 233

[12][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
          Length = 539

 Score =  140 bits (352), Expect = 6e-32
 Identities = 75/132 (56%), Positives = 98/132 (74%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG+ +KR+ A +  PK   SL+ KIG + ++   EV ADP AETAEE L +  M
Sbjct: 404 EEIAVDTGIPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSM 462

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KKD+   LD+L  REKQV+  RFG++DGR++TLQEIG ++GVSRERIRQIES AFRKL++
Sbjct: 463 KKDVHMALDTLTTREKQVVVLRFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRS 522

Query: 118 KKRNKHLQQYLV 83
           KK+ K L+ YLV
Sbjct: 523 KKKVKALKDYLV 534

[13][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=Q53JE7_ORYSJ
          Length = 563

 Score =  140 bits (352), Expect = 6e-32
 Identities = 74/133 (55%), Positives = 98/133 (73%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG+ +KR+ A +  PK   SL+ KIG + ++   EV ADP AETAEE L +  M
Sbjct: 429 EEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSM 487

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+D+ K LD+L  RE+QV+  RFG++DGR++TLQEIG  +GVSRERIRQIES AFRKL++
Sbjct: 488 KRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRS 547

Query: 118 KKRNKHLQQYLVS 80
           KKR   L+ YLV+
Sbjct: 548 KKRVNALKDYLVT 560

[14][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
           RepID=Q7XXT0_ORYSJ
          Length = 564

 Score =  139 bits (351), Expect = 8e-32
 Identities = 74/132 (56%), Positives = 97/132 (73%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG+ +KR+ A +  PK   SL+ KIG + ++   EV ADP AETAEE L +  M
Sbjct: 429 EEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSM 487

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+D+ K LD+L  RE+QV+  RFG++DGR++TLQEIG  +GVSRERIRQIES AFRKL++
Sbjct: 488 KRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRS 547

Query: 118 KKRNKHLQQYLV 83
           KKR   L+ YLV
Sbjct: 548 KKRVNALKDYLV 559

[15][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q53KH8_ORYSJ
          Length = 564

 Score =  139 bits (351), Expect = 8e-32
 Identities = 74/132 (56%), Positives = 97/132 (73%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG+ +KR+ A +  PK   SL+ KIG + ++   EV ADP AETAEE L +  M
Sbjct: 429 EEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSM 487

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+D+ K LD+L  RE+QV+  RFG++DGR++TLQEIG  +GVSRERIRQIES AFRKL++
Sbjct: 488 KRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRS 547

Query: 118 KKRNKHLQQYLV 83
           KKR   L+ YLV
Sbjct: 548 KKRVNALKDYLV 559

[16][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=B8AUZ3_ORYSI
          Length = 563

 Score =  139 bits (351), Expect = 8e-32
 Identities = 74/132 (56%), Positives = 97/132 (73%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG+ +KR+ A +  PK   SL+ KIG + ++   EV ADP AETAEE L +  M
Sbjct: 428 EEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSM 486

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+D+ K LD+L  RE+QV+  RFG++DGR++TLQEIG  +GVSRERIRQIES AFRKL++
Sbjct: 487 KRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRS 546

Query: 118 KKRNKHLQQYLV 83
           KKR   L+ YLV
Sbjct: 547 KKRVNALKDYLV 558

[17][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q84Q84_ORYSJ
          Length = 540

 Score =  135 bits (340), Expect = 1e-30
 Identities = 67/131 (51%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG+ ++R+ A +  PK   SL  K+G   ++   E+  D   ETAEE L +  M
Sbjct: 405 EEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLM 463

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++GVSRERIRQIE  AFRKL+ 
Sbjct: 464 KEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRG 523

Query: 118 KKRNKHLQQYL 86
           +K+ + LQ YL
Sbjct: 524 RKKVQSLQHYL 534

[18][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
           Japonica Group RepID=Q10NF3_ORYSJ
          Length = 343

 Score =  135 bits (340), Expect = 1e-30
 Identities = 67/131 (51%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG+ ++R+ A +  PK   SL  K+G   ++   E+  D   ETAEE L +  M
Sbjct: 208 EEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLM 266

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++GVSRERIRQIE  AFRKL+ 
Sbjct: 267 KEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRG 326

Query: 118 KKRNKHLQQYL 86
           +K+ + LQ YL
Sbjct: 327 RKKVQSLQHYL 337

[19][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
           RepID=A9RXT3_PHYPA
          Length = 579

 Score =  135 bits (340), Expect = 1e-30
 Identities = 65/131 (49%), Positives = 100/131 (76%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVAE  GL++++L +V+ + KAP S+E+ IG + +    E++AD + ++ E+ ++KQ M
Sbjct: 442 EEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQLM 501

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++D+E VL +LNPRE++V+R RFG+DDGR KTL+EIG++  V+RERIRQIE+ A RKL+ 
Sbjct: 502 RQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQ 561

Query: 118 KKRNKHLQQYL 86
             RN  L++YL
Sbjct: 562 PSRNSILREYL 572

[20][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=A3AGH1_ORYSJ
          Length = 497

 Score =  135 bits (340), Expect = 1e-30
 Identities = 67/131 (51%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG+ ++R+ A +  PK   SL  K+G   ++   E+  D   ETAEE L +  M
Sbjct: 362 EEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLM 420

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++GVSRERIRQIE  AFRKL+ 
Sbjct: 421 KEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRG 480

Query: 118 KKRNKHLQQYL 86
           +K+ + LQ YL
Sbjct: 481 RKKVQSLQHYL 491

[21][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=A2XF08_ORYSI
          Length = 540

 Score =  135 bits (340), Expect = 1e-30
 Identities = 67/131 (51%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG+ ++R+ A +  PK   SL  K+G   ++   E+  D   ETAEE L +  M
Sbjct: 405 EEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLM 463

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++GVSRERIRQIE  AFRKL+ 
Sbjct: 464 KEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRG 523

Query: 118 KKRNKHLQQYL 86
           +K+ + LQ YL
Sbjct: 524 RKKVQSLQHYL 534

[22][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LQB0_PICSI
          Length = 495

 Score =  133 bits (334), Expect = 7e-30
 Identities = 66/131 (50%), Positives = 92/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVAE  G+SM RL  V    + P SL++ +G + + K SE++AD  +E+ E  + K+  
Sbjct: 363 EEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELF 422

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KKDL++VLD+L  REKQV+R R+G+DDGRMK+L E+GE   +SRER+RQIE  A RKL+ 
Sbjct: 423 KKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQ 482

Query: 118 KKRNKHLQQYL 86
             R +HL+ YL
Sbjct: 483 NHRTQHLKHYL 493

[23][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LLW6_PICSI
          Length = 592

 Score =  133 bits (334), Expect = 7e-30
 Identities = 66/131 (50%), Positives = 92/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVAE  G+SM RL  V    + P SL++ +G + + K SE++AD  +E+ E  + K+  
Sbjct: 460 EEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELF 519

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KKDL++VLD+L  REKQV+R R+G+DDGRMK+L E+GE   +SRER+RQIE  A RKL+ 
Sbjct: 520 KKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQ 579

Query: 118 KKRNKHLQQYL 86
             R +HL+ YL
Sbjct: 580 NHRTQHLKHYL 590

[24][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
          Length = 527

 Score =  128 bits (322), Expect = 2e-28
 Identities = 66/131 (50%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG++++R+ A +  PK   S   K+G   ++   E++ D  AETAEE L +  M
Sbjct: 392 EEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTSAETAEETLHRWLM 450

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KKD+   LDSL+PR+KQV+R+RFG++ GR +TL +IG+++GVSRERIRQIE  AFRKL++
Sbjct: 451 KKDVNTALDSLSPRKKQVMRYRFGIEGGRARTLHDIGQLMGVSRERIRQIELGAFRKLRS 510

Query: 118 KKRNKHLQQYL 86
           K R + LQ YL
Sbjct: 511 KNRLQSLQHYL 521

[25][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RTR4_PHYPA
          Length = 591

 Score =  127 bits (320), Expect = 3e-28
 Identities = 62/131 (47%), Positives = 97/131 (74%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVAE  G+S+++L  ++ + K P S+++ IG  ++    E+IAD + E+ E+ LI+Q +
Sbjct: 456 EEVAELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQVL 515

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+D++ VL +LNPRE++V+R RFG+DDG+ +TL+EIG +  V+RERIRQIE+ A RKL+ 
Sbjct: 516 KQDVDGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLRQ 575

Query: 118 KKRNKHLQQYL 86
             RN  L++YL
Sbjct: 576 PSRNGVLREYL 586

[26][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
           bicolor RepID=C5WQ19_SORBI
          Length = 528

 Score =  126 bits (317), Expect = 7e-28
 Identities = 66/131 (50%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A  TG++++R+ A +  PK   S   K+G   ++   E++ D  AETAEE L +  M
Sbjct: 393 EEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTSAETAEEVLHRWLM 451

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KKD+   L+SL+PREK V+R+RFG++ GR +TL +IG+++GVSRERIRQIE  AFRKL++
Sbjct: 452 KKDVNTALESLSPREKLVMRYRFGIEGGRPRTLHDIGQIMGVSRERIRQIELGAFRKLRS 511

Query: 118 KKRNKHLQQYL 86
           KKR + LQ YL
Sbjct: 512 KKRVQSLQHYL 522

[27][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
           RepID=Q9L4T2_NOSP7
          Length = 389

 Score =  120 bits (302), Expect = 4e-26
 Identities = 60/131 (45%), Positives = 95/131 (72%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+Q+ K  +
Sbjct: 259 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 317

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLEKVLDSL+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 318 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 377

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 378 PNRNSVLKEYI 388

[28][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
           RepID=A0ZJC3_NODSP
          Length = 391

 Score =  120 bits (302), Expect = 4e-26
 Identities = 60/131 (45%), Positives = 95/131 (72%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+Q+ K  +
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 319

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLEKVLDSL+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 320 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 379

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 380 PNRNSVLKEYI 390

[29][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
           RepID=RPOD_ANASP
          Length = 390

 Score =  120 bits (302), Expect = 4e-26
 Identities = 60/131 (45%), Positives = 95/131 (72%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+Q+ K  +
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 318

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLEKVLDSL+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 319 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 378

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 379 PNRNSVLKEYI 389

[30][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
           7420 RepID=B4W0Y8_9CYAN
          Length = 380

 Score =  119 bits (297), Expect = 1e-25
 Identities = 58/131 (44%), Positives = 95/131 (72%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+Q+ K  +
Sbjct: 250 EEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKNLL 308

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 309 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 368

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 369 PNRNSILKEYI 379

[31][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
           RepID=RPOD_SYNY3
          Length = 425

 Score =  119 bits (297), Expect = 1e-25
 Identities = 58/131 (44%), Positives = 95/131 (72%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 295 EEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 353

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 354 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 413

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 414 PNRNSILKEYI 424

[32][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q8S9D0_GUITH
          Length = 490

 Score =  118 bits (296), Expect = 2e-25
 Identities = 57/139 (41%), Positives = 96/139 (69%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   +S+++L +VL + +   SLE+ +  + +        + + E+ EE + K  +
Sbjct: 311 EEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSML 370

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           + DLE V++SL+PRE+ V+R R+G+DDGR+KTL+EIG++  V+RER+RQIE+ A RKL+ 
Sbjct: 371 RDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430

Query: 118 KKRNKHLQQYLVSHPSNID 62
             R+  L+ Y+++ PSN+D
Sbjct: 431 PYRSSILRDYVLATPSNLD 449

[33][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
           RepID=B5VWQ7_SPIMA
          Length = 387

 Score =  117 bits (294), Expect = 3e-25
 Identities = 58/131 (44%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+Q+ K  +
Sbjct: 257 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 315

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 316 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 375

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 376 PNRNSILKEYI 386

[34][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
           RepID=A0YTZ3_9CYAN
          Length = 391

 Score =  117 bits (294), Expect = 3e-25
 Identities = 58/131 (44%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+Q+ K  +
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 319

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 320 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 379

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 380 PNRNSILKEYI 390

[35][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
           RepID=Q59965_SYNP2
          Length = 375

 Score =  117 bits (292), Expect = 5e-25
 Identities = 58/131 (44%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+Q+ K  +
Sbjct: 245 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKSLL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+ RE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 304 REDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 364 PNRNSILKEYI 374

[36][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
           RepID=Q10UV2_TRIEI
          Length = 386

 Score =  116 bits (291), Expect = 7e-25
 Identities = 57/131 (43%), Positives = 95/131 (72%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A +  +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 256 EEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKNLL 314

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL+SL+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 315 REDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 374

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 375 PNRNSILKEYI 385

[37][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
           RepID=B7KDV7_CYAP7
          Length = 376

 Score =  116 bits (291), Expect = 7e-25
 Identities = 57/131 (43%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 246 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 304

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 305 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 364

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 365 PNRNSILKEYI 375

[38][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WS32_CYAA5
          Length = 416

 Score =  116 bits (291), Expect = 7e-25
 Identities = 57/131 (43%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 286 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 405 PNRNSILKEYI 415

[39][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
           RepID=B0JGK3_MICAN
          Length = 416

 Score =  116 bits (291), Expect = 7e-25
 Identities = 57/131 (43%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 286 EEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 405 PNRNSILKEYI 415

[40][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
           RepID=Q4C7J7_CROWT
          Length = 414

 Score =  116 bits (291), Expect = 7e-25
 Identities = 57/131 (43%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 284 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 342

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 343 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 402

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 403 PNRNSILKEYI 413

[41][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
           RepID=B4AUJ5_9CHRO
          Length = 377

 Score =  116 bits (291), Expect = 7e-25
 Identities = 57/131 (43%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 247 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 305

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 306 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 365

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 366 PNRNSILKEYI 376

[42][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
           RepID=B1PVV9_MICAE
          Length = 416

 Score =  116 bits (291), Expect = 7e-25
 Identities = 57/131 (43%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 286 EEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 405 PNRNSILKEYI 415

[43][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
           RepID=A8YBI5_MICAE
          Length = 416

 Score =  116 bits (291), Expect = 7e-25
 Identities = 57/131 (43%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 286 EEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 405 PNRNSILKEYI 415

[44][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
           RepID=A3ISY9_9CHRO
          Length = 416

 Score =  116 bits (291), Expect = 7e-25
 Identities = 57/131 (43%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 286 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 405 PNRNSILKEYI 415

[45][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
           RepID=RPOD_MICAE
          Length = 416

 Score =  116 bits (291), Expect = 7e-25
 Identities = 57/131 (43%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 286 EEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 405 PNRNSILKEYI 415

[46][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
           RepID=B0CDC4_ACAM1
          Length = 371

 Score =  116 bits (290), Expect = 9e-25
 Identities = 57/131 (43%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+Q+ K  +
Sbjct: 241 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLL 299

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V++ R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 300 REDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 359

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 360 PNRNSVLKEYI 370

[47][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
          Length = 525

 Score =  115 bits (289), Expect = 1e-24
 Identities = 61/133 (45%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-INQNLKPSEVIADPEAETAEEQLIKQF 302
           EE+A    +S+++++ +    +AP SL Q +G  N+     + + D  AE  E+   K  
Sbjct: 383 EEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLIDANAEGPEKVSGKSL 442

Query: 301 MKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLK 122
           +K+DLE VL++LNPRE+ V+R R+G+DDGR+KTL+EIG +  V+RERIRQIE+ A RKLK
Sbjct: 443 LKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLK 502

Query: 121 NKKRNKHLQQYLV 83
              RN+ LQ+Y V
Sbjct: 503 QPSRNQVLQEYFV 515

[48][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
           RepID=Q2JS52_SYNJA
          Length = 404

 Score =  115 bits (287), Expect = 2e-24
 Identities = 57/131 (43%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + E ET EE++ K  +
Sbjct: 274 EEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESEGETPEERVAKVLL 332

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL++L PRE+ V++ R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 333 REDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 392

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 393 PNRNSVLKEYI 403

[49][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
           RepID=Q7NHG5_GLOVI
          Length = 400

 Score =  114 bits (286), Expect = 3e-24
 Identities = 56/131 (42%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 270 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDKVAKNLL 328

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL++L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 329 REDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 388

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 389 PNRNSVLKEYI 399

[50][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
           RepID=C7QR23_CYAP0
          Length = 379

 Score =  114 bits (286), Expect = 3e-24
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+++ K  +
Sbjct: 249 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGENPEDEVSKNLL 307

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 308 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 367

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 368 PNRNSILKEYI 378

[51][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
           BP-1 RepID=Q8DL79_THEEB
          Length = 418

 Score =  114 bits (285), Expect = 3e-24
 Identities = 56/131 (42%), Positives = 94/131 (71%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+Q+ K  +
Sbjct: 288 EEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKHLL 346

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V++ R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 347 REDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 406

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 407 PNRNSVLKEYI 417

[52][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
           6301 RepID=Q5N3Q1_SYNP6
          Length = 399

 Score =  114 bits (285), Expect = 3e-24
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLL 327

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 328 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 387

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 388 PNRNSILKEYI 398

[53][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
           RepID=B4WPM0_9SYNE
          Length = 404

 Score =  114 bits (285), Expect = 3e-24
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 274 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLL 332

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 333 REDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 392

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 393 PNRNSVLKEYI 403

[54][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
           PCC 7942 RepID=RPOD1_SYNE7
          Length = 399

 Score =  114 bits (285), Expect = 3e-24
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLL 327

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 328 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 387

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 388 PNRNSILKEYI 398

[55][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R939_9THEO
          Length = 369

 Score =  114 bits (284), Expect = 4e-24
 Identities = 56/131 (42%), Positives = 87/131 (66%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE  G+S +++  ++   + P SLE  IG  ++    + I D EA+   E+     +
Sbjct: 238 EEIAEKMGISPEKVREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEASYALL 297

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++ L +VL SL PRE++V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+   RKL++
Sbjct: 298 REQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRH 357

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 358 PSRSKKLKDYL 368

[56][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MUC7_9CHLO
          Length = 587

 Score =  113 bits (283), Expect = 6e-24
 Identities = 56/131 (42%), Positives = 87/131 (66%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   +++++++ +      P SL Q +  + +    E + D  AE  ++   K  +
Sbjct: 439 EEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSRTVEETLVDDHAEHPDDATGKVLL 498

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+DLE VL++L+PRE+ V+R R+GMDDGR+KTL+EIG +  V+RERIRQIE+ A RKL+ 
Sbjct: 499 KEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 558

Query: 118 KKRNKHLQQYL 86
             RN  L++YL
Sbjct: 559 PSRNGILREYL 569

[57][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
           RepID=B8HPM3_CYAP4
          Length = 378

 Score =  113 bits (282), Expect = 8e-24
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+Q+ K  +
Sbjct: 248 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 306

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V++ R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 307 REDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 366

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 367 PNRNSVLKEYI 377

[58][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
           RepID=A4RYI5_OSTLU
          Length = 344

 Score =  113 bits (282), Expect = 8e-24
 Identities = 60/131 (45%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-INQNLKPSEVIADPEAETAEEQLIKQF 302
           EE+A    +S ++++ +    +AP SL Q +G  N+     + + D  AE  E+   K  
Sbjct: 197 EEIAAEMDMSAEKITQIKKAAQAPVSLAQTMGGDNKGRTVEDTLVDVTAEGPEKVSGKSL 256

Query: 301 MKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLK 122
           +K+DLE VL++LNPRE+ V+R R+G+DDGR+KTL+EIG +  V+RERIRQIE+ A RKLK
Sbjct: 257 LKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLK 316

Query: 121 NKKRNKHLQQY 89
              RN  LQ+Y
Sbjct: 317 QPSRNSILQEY 327

[59][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9313 RepID=Q7V698_PROMM
          Length = 461

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 331 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNLL 389

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 390 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRH 449

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 450 PNRNGVLKEYI 460

[60][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
           RepID=Q7U5C4_SYNPX
          Length = 471

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 341 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 399

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 400 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 459

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 460 PNRNGVLKEYI 470

[61][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
           RepID=Q3AWQ6_SYNS9
          Length = 451

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 379

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 380 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 439

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 440 PNRNGVLKEYI 450

[62][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
           RepID=Q3ALS7_SYNSC
          Length = 435

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 305 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 363

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 364 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 423

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 424 PNRNGVLKEYI 434

[63][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
           RepID=Q0I8I7_SYNS3
          Length = 440

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 310 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 368

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 369 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 428

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 429 PNRNGVLKEYI 439

[64][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
           RepID=A5GJC2_SYNPW
          Length = 450

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 320 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 378

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 379 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 438

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 439 PNRNGVLKEYI 449

[65][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9303 RepID=A2C7M0_PROM3
          Length = 444

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 314 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNLL 372

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 373 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRH 432

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 433 PNRNGVLKEYI 443

[66][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
           RepID=Q05YJ7_9SYNE
          Length = 451

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 379

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 380 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 439

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 440 PNRNGVLKEYI 450

[67][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
           RepID=Q05RP2_9SYNE
          Length = 479

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 349 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 407

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 408 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 467

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 468 PNRNGVLKEYI 478

[68][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
           RepID=D0CLH5_9SYNE
          Length = 458

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 328 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 386

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 387 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 446

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 447 PNRNGVLKEYI 457

[69][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
           RepID=B5ILG7_9CHRO
          Length = 503

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 373 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 431

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 432 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 491

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 492 PNRNGVLKEYI 502

[70][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
           RepID=A4CRY9_SYNPV
          Length = 447

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 317 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 375

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 376 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 435

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 436 PNRNGVLKEYI 446

[71][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
           RepID=A3Z5L5_9SYNE
          Length = 456

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 326 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 384

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 385 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 444

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 445 PNRNGVLKEYI 455

[72][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
           RepID=A3YZH3_9SYNE
          Length = 469

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 339 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 397

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 398 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 457

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 458 PNRNGVLKEYI 468

[73][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
           RepID=B1X5Q2_PAUCH
          Length = 460

 Score =  112 bits (279), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 330 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 388

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 389 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 448

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 449 PNRNGVLKEYI 459

[74][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           NATL2A RepID=Q46GS6_PROMT
          Length = 420

 Score =  111 bits (278), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 288 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLL 346

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 347 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 406

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 407 PNRNGVLKEYI 417

[75][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
           RepID=C5D4R8_GEOSW
          Length = 374

 Score =  111 bits (278), Expect = 2e-23
 Identities = 57/131 (43%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+ +++  +L   + P SLE  IG   +    + I D EA +  E    + +
Sbjct: 243 EEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELL 302

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 362

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 363 PSRSKRLKDFL 373

[76][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           NATL1A RepID=A2C0V5_PROM1
          Length = 420

 Score =  111 bits (278), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 288 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLL 346

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 347 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 406

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 407 PNRNGVLKEYI 417

[77][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
           RepID=C6QPZ7_9BACI
          Length = 377

 Score =  111 bits (278), Expect = 2e-23
 Identities = 57/131 (43%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+ +++  +L   + P SLE  IG   +    + I D EA +  E    + +
Sbjct: 246 EEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELL 305

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 306 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 365

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 366 PSRSKRLKDFL 376

[78][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
          Length = 375

 Score =  111 bits (278), Expect = 2e-23
 Identities = 57/131 (43%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+ +++  +L   + P SLE  IG   +    + I D EA +  E    + +
Sbjct: 244 EEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[79][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
           pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
          Length = 396

 Score =  110 bits (276), Expect = 4e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 266 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 324

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 325 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 384

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 385 PNRNGVLKEYI 395

[80][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9312 RepID=Q31C37_PROM9
          Length = 393

 Score =  110 bits (276), Expect = 4e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 321

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 322 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 381

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 382 PNRNGVLKEYI 392

[81][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
           JW/NM-WN-LF RepID=B2A1Z3_NATTJ
          Length = 360

 Score =  110 bits (276), Expect = 4e-23
 Identities = 57/131 (43%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   +S  ++  +L   + P SLE  IG   +    + I D +A+   +    + +
Sbjct: 229 EEIAEQMDMSEDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAKPPADAAAFELL 288

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K  LE+VLDSL PRE++V+R RFG+DDG+ +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 289 KGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRKLRH 348

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 349 PMRSKRLKDYL 359

[82][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9215 RepID=A8G3L2_PROM2
          Length = 393

 Score =  110 bits (276), Expect = 4e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 321

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 322 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 381

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 382 PNRNGVLKEYI 392

[83][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9301 RepID=A3PBM1_PROM0
          Length = 394

 Score =  110 bits (276), Expect = 4e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 264 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 322

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 323 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 382

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 383 PNRNGVLKEYI 393

[84][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9515 RepID=A2BVF8_PROM5
          Length = 397

 Score =  110 bits (276), Expect = 4e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 267 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 325

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 326 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 385

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 386 PNRNGVLKEYI 396

[85][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           AS9601 RepID=A2BPX8_PROMS
          Length = 394

 Score =  110 bits (276), Expect = 4e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 264 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 322

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 323 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 382

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 383 PNRNGVLKEYI 393

[86][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
           35185 RepID=C9LTA9_9FIRM
          Length = 375

 Score =  110 bits (276), Expect = 4e-23
 Identities = 56/131 (42%), Positives = 88/131 (67%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AEA  +S++R+  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 244 EEIAEAMEISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VLD+L  RE++V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R++ L+ +L
Sbjct: 364 PSRSRKLKDFL 374

[87][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9202 RepID=B9P0P2_PROMA
          Length = 393

 Score =  110 bits (276), Expect = 4e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  E+ + K  +
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 321

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 322 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 381

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 382 PNRNGVLKEYI 392

[88][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
           RepID=UPI0001851148
          Length = 337

 Score =  110 bits (275), Expect = 5e-23
 Identities = 56/131 (42%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  E    + +
Sbjct: 206 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSEHAAYELL 265

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 266 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 325

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 326 PSRSKRLKDFL 336

[89][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
           RepID=Q7VD88_PROMA
          Length = 438

 Score =  110 bits (275), Expect = 5e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + ++E  E  + K  +
Sbjct: 308 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTLL 366

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 367 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 426

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 427 PNRNGVLKEYI 437

[90][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
           39073 RepID=Q2RKT5_MOOTA
          Length = 361

 Score =  110 bits (275), Expect = 5e-23
 Identities = 56/131 (42%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    + ++R+  +    + P SLE  IG  ++    + I D +A+   E      +
Sbjct: 230 EEIAHEMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDEDAQAPAEAASFMLL 289

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++ LE+VL+SL PREK+V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 290 REQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRH 349

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 350 PSRSKKLKDYL 360

[91][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9211 RepID=A9BEB7_PROM4
          Length = 425

 Score =  110 bits (275), Expect = 5e-23
 Identities = 56/131 (42%), Positives = 93/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + ++E  E  + K  +
Sbjct: 295 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTLL 353

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 354 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 413

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 414 PNRNGVLKEYI 424

[92][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
           Tax=Geobacillus RepID=C9RYK5_9BACI
          Length = 375

 Score =  110 bits (275), Expect = 5e-23
 Identities = 56/131 (42%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+ +++  +L   + P SLE  IG   +    + I D +A +  E    + +
Sbjct: 244 EEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[93][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
           Nor1 RepID=A1HPB3_9FIRM
          Length = 368

 Score =  110 bits (275), Expect = 5e-23
 Identities = 55/131 (41%), Positives = 87/131 (66%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +S++R+  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 237 EEIAREMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VL++L PRE++V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 357 PSRSKKLKDFL 367

[94][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67RX0_SYMTH
          Length = 388

 Score =  110 bits (274), Expect = 6e-23
 Identities = 56/131 (42%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    + ++R+  +    + P SLE  IG  ++    + I D +A    E      +
Sbjct: 257 EEIAAVMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFTLL 316

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VL+SL PRE++V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 317 KEQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRH 376

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 377 PSRSKKLKDYL 387

[95][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
           14580 RepID=Q65H81_BACLD
          Length = 373

 Score =  110 bits (274), Expect = 6e-23
 Identities = 56/131 (42%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 242 EEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[96][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           Y51 RepID=Q24T06_DESHY
          Length = 367

 Score =  110 bits (274), Expect = 6e-23
 Identities = 56/131 (42%), Positives = 87/131 (66%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +S++R+  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 236 EEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILL 295

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VL++L PRE++V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 296 KEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRH 355

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 356 PSRSKKLKDYL 366

[97][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           DCB-2 RepID=B8FTY1_DESHD
          Length = 372

 Score =  110 bits (274), Expect = 6e-23
 Identities = 56/131 (42%), Positives = 87/131 (66%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +S++R+  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 241 EEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILL 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VL++L PRE++V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 301 KEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 361 PSRSKKLKDYL 371

[98][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
           RepID=B7GH73_ANOFW
          Length = 372

 Score =  110 bits (274), Expect = 6e-23
 Identities = 56/131 (42%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+ +++  +L   + P SLE  IG   +    + I D +A +  E    + +
Sbjct: 241 EEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELL 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 301 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 361 PSRSKRLKDFL 371

[99][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
           RepID=B1HTI2_LYSSC
          Length = 375

 Score =  110 bits (274), Expect = 6e-23
 Identities = 55/131 (41%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 244 EEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[100][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
           RepID=A8FFA5_BACP2
          Length = 373

 Score =  110 bits (274), Expect = 6e-23
 Identities = 56/131 (42%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 242 EEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[101][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
           FZB42 RepID=A7Z6T5_BACA2
          Length = 373

 Score =  110 bits (274), Expect = 6e-23
 Identities = 56/131 (42%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 242 EEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[102][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
           sphaericus RepID=O52862_BACSH
          Length = 140

 Score =  110 bits (274), Expect = 6e-23
 Identities = 55/131 (41%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 9   EEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELL 68

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 69  KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 128

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 129 PSRSKRLKDFL 139

[103][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
           RepID=RPOD_BACSU
          Length = 371

 Score =  110 bits (274), Expect = 6e-23
 Identities = 56/131 (42%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 240 EEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL 299

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 300 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 359

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 360 PSRSKRLKDFL 370

[104][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
           JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
          Length = 403

 Score =  109 bits (273), Expect = 8e-23
 Identities = 54/131 (41%), Positives = 92/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET E+++ K  +
Sbjct: 273 EEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDRVAKVLL 331

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL++L  RE+ V++ R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A RKL++
Sbjct: 332 REDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 391

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 392 PNRNSVLKEYI 402

[105][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
           RepID=C6PJN3_9THEO
          Length = 273

 Score =  109 bits (273), Expect = 8e-23
 Identities = 54/132 (40%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   +S K+   +L   +   SLE+ +G ++N K  ++IAD EA    E+L    +
Sbjct: 142 EEIAEEMNISEKKAKVLLEIVQGIVSLEEPVGEDENGKLGDIIADKEAVDPVEELESMLL 201

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIG-EMLGVSRERIRQIESCAFRKLK 122
           K+ +++VL +L PRE++V+R RFG+DDG+++TL+E+G E+ G+SRER+RQIE+ A ++L+
Sbjct: 202 KEQVDEVLSTLAPREEKVLRLRFGLDDGKIRTLEEVGKELGGISRERVRQIETKALKRLR 261

Query: 121 NKKRNKHLQQYL 86
           +  R++ L+++L
Sbjct: 262 HPNRSRRLKEFL 273

[106][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
          Length = 485

 Score =  109 bits (273), Expect = 8e-23
 Identities = 53/133 (39%), Positives = 91/133 (68%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   +S+++L +VL + +   SLE+ +  + +        + + E+ EE + K  +
Sbjct: 311 EEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSML 370

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           + DLE V++SL+PRE+ V+R R+G+DDGR+KTL+EIG++  V+RER+RQIE+ A RKL+ 
Sbjct: 371 RDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430

Query: 118 KKRNKHLQQYLVS 80
             R+  L+ Y+++
Sbjct: 431 PYRSSILRDYVLA 443

[107][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
           RepID=Q2B288_9BACI
          Length = 374

 Score =  109 bits (272), Expect = 1e-22
 Identities = 56/131 (42%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+  ++  +L   + P SLE  IG   +    + I D +A +  E    + +
Sbjct: 243 EEIAEDMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELL 302

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 362

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 363 PSRSKRLKDFL 373

[108][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
           RepID=A3IBK5_9BACI
          Length = 375

 Score =  109 bits (272), Expect = 1e-22
 Identities = 54/131 (41%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 244 EEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE V+D+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVIDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[109][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
           RepID=RPSD2_BACSP
          Length = 377

 Score =  109 bits (272), Expect = 1e-22
 Identities = 56/131 (42%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    LS++++  ++   + P SLE  IG   +    + I D EA T  +    + +
Sbjct: 246 EEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELL 305

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 306 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 365

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 366 PSRSKRLKDFL 376

[110][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           subsp. aureus N315 RepID=RPOD_STAAN
          Length = 368

 Score =  109 bits (272), Expect = 1e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  VL   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[111][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
          Length = 370

 Score =  108 bits (271), Expect = 1e-22
 Identities = 52/131 (39%), Positives = 89/131 (67%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G+S  ++  ++   + P SLE  IG  ++    + + DP+A+   E+     +
Sbjct: 239 EEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLL 298

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++ L++VL +L  RE++V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 299 REQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRH 358

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 359 PSRSKKLKDFL 369

[112][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
           RepID=O08332_STAAU
          Length = 368

 Score =  108 bits (271), Expect = 1e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[113][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           A9299 RepID=C8M7C3_STAAU
          Length = 368

 Score =  108 bits (271), Expect = 1e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[114][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
           aureus A6300 RepID=C8LTM9_STAAU
          Length = 368

 Score =  108 bits (271), Expect = 1e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[115][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           subsp. aureus 68-397 RepID=C8ACF1_STAAU
          Length = 342

 Score =  108 bits (271), Expect = 1e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 211 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 270

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 271 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 330

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 331 PSRSKRLKDFM 341

[116][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
           aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
          Length = 368

 Score =  108 bits (271), Expect = 1e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[117][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
           RepID=RPOD_STAA8
          Length = 368

 Score =  108 bits (271), Expect = 1e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[118][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
           A1055 RepID=UPI0001B41595
          Length = 373

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[119][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
           JCSC1435 RepID=Q4L6R1_STAHJ
          Length = 368

 Score =  108 bits (270), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[120][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
          Length = 368

 Score =  108 bits (270), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[121][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
           RepID=C3LKX1_BACAC
          Length = 373

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[122][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
           RepID=B9IY60_BACCQ
          Length = 375

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[123][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
           RepID=A7GSY8_BACCN
          Length = 373

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[124][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
           W23144 RepID=C5QXG6_STAEP
          Length = 368

 Score =  108 bits (270), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[125][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
           M23864:W1 RepID=C5QSV2_STAEP
          Length = 368

 Score =  108 bits (270), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[126][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
           RepID=C4WCC7_STAWA
          Length = 367

 Score =  108 bits (270), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 236 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 295

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 296 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 355

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 356 PSRSKRLKDFM 366

[127][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
          Length = 373

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[128][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
           RepID=C2YWN0_BACCE
          Length = 375

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[129][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
           RepID=C2WC75_BACCE
          Length = 373

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[130][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
           RepID=C2U2P5_BACCE
          Length = 375

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[131][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
           RepID=B7HCR6_BACC4
          Length = 375

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[132][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
           RepID=A9VHS1_BACWK
          Length = 375

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[133][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
           RepID=C2PK08_BACCE
          Length = 375

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[134][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
           RepID=B7HPJ2_BACC7
          Length = 375

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[135][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
           RepID=C2M0X4_STAHO
          Length = 368

 Score =  108 bits (270), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[136][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
           RepID=B9CVA9_STACP
          Length = 368

 Score =  108 bits (270), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[137][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
           RepID=B7IYE3_BACC2
          Length = 375

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[138][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
           RepID=A0RIR5_BACAH
          Length = 373

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[139][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
           RepID=RPOD_STAEQ
          Length = 368

 Score =  108 bits (270), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA++  +    + +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 357 PSRSKRLKDFM 367

[140][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
           RepID=A5GSD3_SYNR3
          Length = 401

 Score =  108 bits (269), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 92/131 (70%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE+  +++++L  +  + + P SLE  IG  ++ +  + I + + E  ++ + K  +
Sbjct: 271 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPDQDVAKNLL 329

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++  V+RERIRQIE+ A  KL++
Sbjct: 330 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALLKLRH 389

Query: 118 KKRNKHLQQYL 86
             RN  L++Y+
Sbjct: 390 PNRNGVLKEYI 400

[141][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
           RepID=C2C209_LISGR
          Length = 389

 Score =  108 bits (269), Expect = 2e-22
 Identities = 55/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 258 EEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL 317

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G + GV+RERIRQIE+ A RKL++
Sbjct: 318 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 377

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 378 PSRSKQLKDFL 388

[142][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
           RepID=C1PEH1_BACCO
          Length = 377

 Score =  108 bits (269), Expect = 2e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   +S  ++  ++   + P SLE  IG   +    + I D +A +  +    + +
Sbjct: 246 EEIAEEMDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELL 305

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 306 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 365

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 366 PSRSKRLKDFL 376

[143][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q98RZ3_GUITH
          Length = 460

 Score =  108 bits (269), Expect = 2e-22
 Identities = 53/134 (39%), Positives = 90/134 (67%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   +S+++L  VL + +   SLE+ +  + +        + + E+ EE + K  +
Sbjct: 294 EEIAKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVEKSML 353

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           + DLE V++SL+PRE+ V+R R+G+DDGR+KTL+EIG++  V+RER+RQIE+ A RKL+ 
Sbjct: 354 RDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 413

Query: 118 KKRNKHLQQYLVSH 77
             R+  L+ Y+ S+
Sbjct: 414 PYRSSILRDYVASN 427

[144][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
           RepID=RPOD_BACHD
          Length = 372

 Score =  108 bits (269), Expect = 2e-22
 Identities = 56/131 (42%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVAE   L+ +++  +L   + P SLE  IG   +    + I D +A    +    + +
Sbjct: 241 EEVAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELL 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 301 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 361 PSRSKRLKDFL 371

[145][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
           101-4-CHN RepID=C7XU09_9LACO
          Length = 381

 Score =  107 bits (268), Expect = 3e-22
 Identities = 55/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  K++  +L   + P SLE  IG   +    + I D +A +  +    + M
Sbjct: 250 EEIGAEMDMPTKKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMM 309

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KK LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 310 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 369

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 370 PSRSKQLKDFL 380

[146][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
           786 str. D14 RepID=C6J365_9BACL
          Length = 374

 Score =  107 bits (268), Expect = 3e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    LS++++  ++   + P SLE  IG   +    + I D EA    +    + +
Sbjct: 243 EEIAAEMDLSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELL 302

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 362

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 363 PSRSKRLKDFL 373

[147][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
           RepID=C0GBZ7_9FIRM
          Length = 372

 Score =  107 bits (268), Expect = 3e-22
 Identities = 53/131 (40%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           +E+A    +S +R+  +L   + P SLE  IG   +    + I D + +   E    + +
Sbjct: 241 DEIAHVMNISEERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDVQAPAEAAAFELL 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L+ VL++L PREK+V+  RFG++DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 301 KEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 361 PMRSKRLKDYL 371

[148][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
           RepID=B3YVL5_BACCE
          Length = 373

 Score =  107 bits (268), Expect = 3e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L+ +++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEGDSHLGDFIEDQEATSPADHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[149][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
          Length = 377

 Score =  107 bits (267), Expect = 4e-22
 Identities = 55/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    LS++++  ++   + P SLE  IG   +    + I D EA    +    + +
Sbjct: 246 EEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELL 305

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 306 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 365

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 366 PSRSKRLKDFL 376

[150][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
           sakei 23K RepID=Q38X96_LACSS
          Length = 369

 Score =  107 bits (267), Expect = 4e-22
 Identities = 54/131 (41%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     ++  ++  +L   + P SLE  IG   +    + I D +A + EE    + +
Sbjct: 238 EEIGAEMDMNTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELL 297

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 298 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 357

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 358 PSRSKQLKDFL 368

[151][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
           JCSC5402 RepID=B9E6V2_MACCJ
          Length = 366

 Score =  107 bits (267), Expect = 4e-22
 Identities = 53/131 (40%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D +A++  +    + +
Sbjct: 235 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAQSPADHAAYELL 294

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 295 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 354

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 355 PSRSKRLKDFM 365

[152][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
           J2-071 RepID=UPI0000F53BBC
          Length = 374

 Score =  107 bits (266), Expect = 5e-22
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D +A +  +    + +
Sbjct: 243 EEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELL 302

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G + GV+RERIRQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 362

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 363 PSRSKQLKDFL 373

[153][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
           RepID=C4L3Z9_EXISA
          Length = 364

 Score =  107 bits (266), Expect = 5e-22
 Identities = 54/131 (41%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   L+ +++  +L   + P SLE  IG   +    + I D +A   ++    + +
Sbjct: 233 EEIAKEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDAAAYELL 292

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 293 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 352

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 353 PSRSKRLKDFL 363

[154][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
           carnosus TM300 RepID=B9DNN2_STACT
          Length = 369

 Score =  107 bits (266), Expect = 5e-22
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D E ++  +    + +
Sbjct: 238 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDHAAYELL 297

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 298 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 357

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 358 PSRSKRLKDFM 368

[155][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
           RepID=A8MG96_ALKOO
          Length = 372

 Score =  107 bits (266), Expect = 5e-22
 Identities = 56/131 (42%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    LS +++  +L   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 241 EEIAAEMDLSEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFSLL 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L +VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 301 KEQLVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 361 PSRSKKLKDYL 371

[156][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
           RepID=C9B6G3_ENTFC
          Length = 369

 Score =  107 bits (266), Expect = 5e-22
 Identities = 55/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     L  +++  +L   + P SLE  IG   +    + I D EA +  E    + +
Sbjct: 238 EEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELL 297

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 298 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 357

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 358 PSRSKQLKDFL 368

[157][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
           RepID=C2HA56_ENTFC
          Length = 369

 Score =  107 bits (266), Expect = 5e-22
 Identities = 55/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     L  +++  +L   + P SLE  IG   +    + I D EA +  E    + +
Sbjct: 238 EEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELL 297

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 298 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 357

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 358 PSRSKQLKDFL 368

[158][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
          Length = 595

 Score =  107 bits (266), Expect = 5e-22
 Identities = 63/149 (42%), Positives = 92/149 (61%), Gaps = 10/149 (6%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIAD---------PEAETA 326
           EE+A+A  ++++++  +      P SL Q +  N N +    + D         PE ET 
Sbjct: 451 EELADAMEMTVEKIKQIKKASLVPISLSQTVN-NSNGEDKRTVEDTLIDDYTEHPEGETG 509

Query: 325 EEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIE 146
                K  +K+DLE VL++LNPRE+ V+R R+G+DDGR+KTL+EIG +  V+RERIRQIE
Sbjct: 510 -----KVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIE 564

Query: 145 SCAFRKLKNKKRNKHLQQYLVS-HPSNID 62
           + A RKL+   RN  L++YL + H S ID
Sbjct: 565 AKALRKLRQPSRNGILREYLPNDHESVID 593

[159][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
           RepID=RPOD_LISMO
          Length = 374

 Score =  107 bits (266), Expect = 5e-22
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D +A +  +    + +
Sbjct: 243 EEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELL 302

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G + GV+RERIRQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 362

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 363 PSRSKQLKDFL 373

[160][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
          Length = 374

 Score =  107 bits (266), Expect = 5e-22
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L  +++  +L   + P SLE  IG   +    + I D +A +  +    + +
Sbjct: 243 EEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELL 302

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G + GV+RERIRQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 362

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 363 PSRSKQLKDFL 373

[161][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
           subsp. larvae BRL-230010 RepID=UPI0001693157
          Length = 375

 Score =  106 bits (265), Expect = 7e-22
 Identities = 55/131 (41%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   LS  ++  ++   + P SLE  IG   +    + I D EA    +    + +
Sbjct: 244 EEIAKEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELL 303

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 364 PSRSKRLKDFL 374

[162][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WHD0_BACSK
          Length = 373

 Score =  106 bits (265), Expect = 7e-22
 Identities = 56/131 (42%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEV +   LS  ++  +L   + P SLE  IG   +    + I D EA    +    + +
Sbjct: 242 EEVGKEMDLSPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKRLKDFL 372

[163][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
           wolfei str. Goettingen RepID=Q0AWU4_SYNWW
          Length = 358

 Score =  106 bits (265), Expect = 7e-22
 Identities = 54/130 (41%), Positives = 86/130 (66%)
 Frame = -2

Query: 475 EVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMK 296
           EVAE   +++ R+  ++   + P SLE  IG   +    + I D EAE+ EE      ++
Sbjct: 228 EVAEEMDIAVDRVIEIMKVAQEPVSLETPIGEEDDSHLGDFITDEEAESPEESASFVLLR 287

Query: 295 KDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKNK 116
           + L+ +L++L  RE++V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+ A RKL++ 
Sbjct: 288 EHLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHP 347

Query: 115 KRNKHLQQYL 86
            R+K L+ Y+
Sbjct: 348 SRSKKLKDYI 357

[164][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
           100599 RepID=C0ZB92_BREBN
          Length = 376

 Score =  106 bits (265), Expect = 7e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   L+ +++  ++   + P SLE  IG   +    + I D +A    +    + +
Sbjct: 245 EEIAEKMDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELL 304

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 305 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 364

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 365 PSRSKRLKDFL 375

[165][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
           RepID=B8I6N1_CLOCE
          Length = 359

 Score =  106 bits (265), Expect = 7e-22
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           +E+A+  G+S+ ++  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 228 DEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTLL 287

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 288 KEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 347

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 348 PSRSKKLKDYL 358

[166][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
           RepID=C8P839_9LACO
          Length = 380

 Score =  106 bits (265), Expect = 7e-22
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  +    + M
Sbjct: 249 EEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMM 308

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KK LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 369 PSRSKQLKDFL 379

[167][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
           RepID=C2EX53_LACRE
          Length = 380

 Score =  106 bits (265), Expect = 7e-22
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  +    + M
Sbjct: 249 EEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMM 308

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KK LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 369 PSRSKQLKDFL 379

[168][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
           49540 RepID=C2ESB4_9LACO
          Length = 380

 Score =  106 bits (265), Expect = 7e-22
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  +    + M
Sbjct: 249 EEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMM 308

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KK LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 369 PSRSKQLKDFL 379

[169][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
           RepID=A5VJI3_LACRD
          Length = 380

 Score =  106 bits (265), Expect = 7e-22
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  +    + M
Sbjct: 249 EEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMM 308

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KK LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 369 PSRSKQLKDFL 379

[170][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
           RepID=B3XRX4_LACRE
          Length = 380

 Score =  106 bits (265), Expect = 7e-22
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  +    + M
Sbjct: 249 EEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMM 308

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KK LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 369 PSRSKQLKDFL 379

[171][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8EPY6_OCEIH
          Length = 380

 Score =  106 bits (264), Expect = 9e-22
 Identities = 55/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+ E   L   ++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 249 EEIGEEMELGPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHAAYELL 308

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 309 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 369 PSRSKRLKDFL 379

[172][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
           20544 RepID=C9KNX0_9FIRM
          Length = 373

 Score =  106 bits (264), Expect = 9e-22
 Identities = 53/131 (40%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + + R+  ++   + P SLE  IG  ++    + I D +A    +      +
Sbjct: 242 EEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPADAASFMLL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L PRE++V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R++ L+ +L
Sbjct: 362 PSRSRKLKDFL 372

[173][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
           RepID=C7TJI1_LACRL
          Length = 416

 Score =  106 bits (264), Expect = 9e-22
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 285 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELL 344

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 345 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 404

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 405 PSRSKQLKDFL 415

[174][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
           oral taxon 786 str. D14 RepID=C6IWD8_9BACL
          Length = 325

 Score =  106 bits (264), Expect = 9e-22
 Identities = 54/131 (41%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   L+  ++  ++   + P SLE  IG   +    + I D +A    E    + +
Sbjct: 194 EEIAKEMDLTPDKVREIMKIAQEPVSLETPIGEENDSNLGDFIEDHDAPAPAEAAAYELL 253

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VLD+L  RE+ V+R RFGMDDGR +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 254 KEQLEEVLDTLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRH 313

Query: 118 KKRNKHLQQYL 86
             R+K L+ ++
Sbjct: 314 PSRSKRLKDFM 324

[175][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
           paracasei 8700:2 RepID=C5F5B8_LACPA
          Length = 352

 Score =  106 bits (264), Expect = 9e-22
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 221 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELL 280

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 281 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 340

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 341 PSRSKQLKDFL 351

[176][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
           RepID=C2JXD0_LACRH
          Length = 416

 Score =  106 bits (264), Expect = 9e-22
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 285 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELL 344

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 345 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 404

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 405 PSRSKQLKDFL 415

[177][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
           RepID=B3WEK4_LACCB
          Length = 422

 Score =  106 bits (264), Expect = 9e-22
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 291 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELL 350

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 351 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 410

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 411 PSRSKQLKDFL 421

[178][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
           RepID=B2GBZ9_LACF3
          Length = 380

 Score =  106 bits (264), Expect = 9e-22
 Identities = 54/131 (41%), Positives = 82/131 (62%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  +    + M
Sbjct: 249 EEIGAEMDMDTQKVRDILKISQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMM 308

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           KK LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G + GV+RERIRQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 368

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 369 PSRSKQLKDFL 379

[179][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
           RepID=C7TCR3_LACRG
          Length = 416

 Score =  106 bits (264), Expect = 9e-22
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 285 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELL 344

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 345 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 404

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 405 PSRSKQLKDFL 415

[180][TOP]
>UniRef100_A9RG56 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RG56_PHYPA
          Length = 581

 Score =  106 bits (264), Expect = 9e-22
 Identities = 54/134 (40%), Positives = 92/134 (68%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVA A G+S+++L  +L + + P S++Q IG +++L   E++AD    +A++ L  + +
Sbjct: 447 EEVATAVGISVEKLDFILKSARLPASMDQLIGRDKDLPLWEMVADKGFNSADDFLTNEVL 506

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+D++ VL +L+P E++V+R RFG+DD +  TL++IG    V+RERIRQIE  A RKL++
Sbjct: 507 KQDIDGVLQTLSPTEREVLRLRFGLDDAQSMTLKDIGIFFKVTRERIRQIEVRALRKLRH 566

Query: 118 KKRNKHLQQYLVSH 77
             R   LQ ++ ++
Sbjct: 567 PTRRNILQGHVKNY 580

[181][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
           RepID=C6CTW1_PAESJ
          Length = 376

 Score =  105 bits (263), Expect = 1e-21
 Identities = 55/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    LS  ++  ++   + P SLE  IG   +    + I D EA    +    + +
Sbjct: 245 EEIAAEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELL 304

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 305 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 364

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 365 PSRSKRLKDFL 375

[182][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
           RepID=C7CSZ1_ENTFA
          Length = 368

 Score =  105 bits (263), Expect = 1e-21
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     L  +++  +L   + P SLE  IG   +    + I D +A +  E    + +
Sbjct: 237 EEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 357 PSRSKQLKDFL 367

[183][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
           RepID=RPOD_ENTFA
          Length = 368

 Score =  105 bits (263), Expect = 1e-21
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     L  +++  +L   + P SLE  IG   +    + I D +A +  E    + +
Sbjct: 237 EEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 357 PSRSKQLKDFL 367

[184][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
           RepID=Q892T0_CLOTE
          Length = 366

 Score =  105 bits (262), Expect = 2e-21
 Identities = 55/131 (41%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   +S+ R+  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 235 EEIAKEMEISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPAEAAAFTML 294

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 295 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 354

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 355 PSRSKKLKDYL 365

[185][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
           RepID=Q1WTP3_LACS1
          Length = 372

 Score =  105 bits (262), Expect = 2e-21
 Identities = 53/131 (40%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  E    + +
Sbjct: 241 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELL 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 301 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 361 PSRSKQLKDFL 371

[186][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
           255-15 RepID=B1YL80_EXIS2
          Length = 361

 Score =  105 bits (262), Expect = 2e-21
 Identities = 52/131 (39%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+++   ++ +++  +L   + P SLE  IG   +    + I D +A   ++    + +
Sbjct: 230 EEISKEMEITPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATAPQDAAAYELL 289

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 290 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 349

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 350 PSRSKRLKDFL 360

[187][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
           QYMF RepID=A6TSG9_ALKMQ
          Length = 372

 Score =  105 bits (262), Expect = 2e-21
 Identities = 55/131 (41%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   L  +++  +L   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 241 EEIAKEMDLPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFSLL 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L +VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 301 KEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 361 PSRSKKLKDYL 371

[188][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
           delbrueckii subsp. lactis RepID=Q71HU9_LACDL
          Length = 167

 Score =  105 bits (262), Expect = 2e-21
 Identities = 54/131 (41%), Positives = 82/131 (62%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    L +K++  VL   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 36  EEIAAEMDLPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEML 95

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K  L +VLD+L  RE+ V+R RFG+DDG  +TL+E+G + GV+RERIRQIE+ A RKL++
Sbjct: 96  KDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRH 155

Query: 118 KKRNKHLQQYL 86
             R+  L+ +L
Sbjct: 156 PSRSNQLRDFL 166

[189][TOP]
>UniRef100_C9AAM5 RNA polymerase sigma-43 factor n=3 Tax=Enterococcus casseliflavus
           RepID=C9AAM5_ENTCA
          Length = 368

 Score =  105 bits (262), Expect = 2e-21
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     L  +++  +L   + P SLE  IG   +    + I D +A +  E    + +
Sbjct: 237 EEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 357 PSRSKQLKDFL 367

[190][TOP]
>UniRef100_C8ZYV7 RNA polymerase sigma-43 factor n=1 Tax=Enterococcus gallinarum EG2
           RepID=C8ZYV7_ENTGA
          Length = 368

 Score =  105 bits (262), Expect = 2e-21
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     L  +++  +L   + P SLE  IG   +    + I D +A +  E    + +
Sbjct: 237 EEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 357 PSRSKQLKDFL 367

[191][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
           11741 RepID=C2EFJ0_9LACO
          Length = 372

 Score =  105 bits (262), Expect = 2e-21
 Identities = 53/131 (40%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  E    + +
Sbjct: 241 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELL 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 301 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 361 PSRSKQLKDFL 371

[192][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
           Ice1 RepID=B0TG57_HELMI
          Length = 371

 Score =  105 bits (261), Expect = 2e-21
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + ++R+  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 240 EEIAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILL 299

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VL++L  RE +V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 300 KEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRH 359

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 360 PSRSKKLKDYL 370

[193][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
           27405 RepID=A3DDV0_CLOTH
          Length = 358

 Score =  105 bits (261), Expect = 2e-21
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + ++++  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 227 EEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLL 286

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 287 KEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 346

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 347 PSRSKKLKDYL 357

[194][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
          Length = 358

 Score =  105 bits (261), Expect = 2e-21
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + ++++  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 227 EEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLL 286

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 287 KEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 346

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 347 PSRSKKLKDYL 357

[195][TOP]
>UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
           RepID=C4V564_9FIRM
          Length = 383

 Score =  105 bits (261), Expect = 2e-21
 Identities = 53/131 (40%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G+++ R+  ++   + P SLE  IG  ++    + I D  A    E      +
Sbjct: 252 EEIAKEMGITVARVHEIMKIAQEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLL 311

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++ LE+VL++L  REK V+R RFG++DGR +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 312 REQLEEVLETLTDREKNVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRH 371

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 372 PSRSKVLRDFL 382

[196][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
           tengcongensis RepID=Q8R970_THETN
          Length = 372

 Score =  104 bits (260), Expect = 3e-21
 Identities = 54/131 (41%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G+  +++  +L   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 241 EELAKEMGMPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAYTML 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 301 KEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 361 PSRSKKLKDFL 371

[197][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
           RepID=A5N6R2_CLOK5
          Length = 354

 Score =  104 bits (260), Expect = 3e-21
 Identities = 55/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVA+   + + ++  ++   + P SLE  IG  ++    + I D EA    E      +
Sbjct: 223 EEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTML 282

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 283 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 342

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 343 PSRSKKLKDYL 353

[198][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
           MC2 155 RepID=A0QVZ5_MYCS2
          Length = 319

 Score =  104 bits (260), Expect = 3e-21
 Identities = 52/130 (40%), Positives = 86/130 (66%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE +G+ +++++ +L   + P SL+  +G ++     + I D EA +AE  +I + +
Sbjct: 188 EELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELL 247

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
             D+  VL +L+ RE+QVIR RFG+DDG+ +TL +IG++ G+SRER+RQIE     KL+N
Sbjct: 248 HTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRN 307

Query: 118 KKRNKHLQQY 89
            +R   L+ Y
Sbjct: 308 GERADRLRSY 317

[199][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
           RepID=C6PTX7_9CLOT
          Length = 361

 Score =  104 bits (260), Expect = 3e-21
 Identities = 55/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVA+   + + ++  ++   + P SLE  IG  ++    + I D EA    E      +
Sbjct: 230 EEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTML 289

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 290 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 349

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 350 PSRSKKLKDYL 360

[200][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
           acidaminovorans DSM 6589 RepID=C4EU48_9BACT
          Length = 387

 Score =  104 bits (260), Expect = 3e-21
 Identities = 50/131 (38%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G+++ R+  +    + P SLE  IG  ++ +  + + D +  + +E    Q +
Sbjct: 256 EEIAQEMGVTVDRVEEIQKIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPDEAAANQIL 315

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++ LE++L+ L  REK+V+R RFG++DG   TL+E+G   GV+RERIRQIE+ A RKL++
Sbjct: 316 REQLEEMLEDLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKALRKLRH 375

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 376 PSRSKRLRDFL 386

[201][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
          Length = 368

 Score =  104 bits (260), Expect = 3e-21
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    L+ +++  +    + P SLE  IG   +    + I D EA    +    + +
Sbjct: 237 EEIAAEMDLTPEKVREIQKIAQEPVSLETPIGEEDDSHLGDFIPDDEAPAPADAAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 357 PSRSKRLKDFL 367

[202][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
           RepID=A5I618_CLOBH
          Length = 361

 Score =  104 bits (260), Expect = 3e-21
 Identities = 55/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EEVA+   + + ++  ++   + P SLE  IG  ++    + I D EA    E      +
Sbjct: 230 EEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTML 289

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 290 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 349

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 350 PSRSKKLKDYL 360

[203][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
           RepID=A0Q1P4_CLONN
          Length = 368

 Score =  104 bits (259), Expect = 3e-21
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + + ++  ++   + P SLE  IG  ++    + I D EA    E      +
Sbjct: 237 EEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTML 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 297 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 357 PSRSKKLKDYL 367

[204][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
           1873 RepID=C5VRR6_CLOBO
          Length = 368

 Score =  104 bits (259), Expect = 3e-21
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + + ++  ++   + P SLE  IG  ++    + I D EA    E      +
Sbjct: 237 EEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTML 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 297 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 357 PSRSKKLKDYL 367

[205][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
           ATCC 33313 RepID=C5RBJ7_WEIPA
          Length = 378

 Score =  104 bits (259), Expect = 3e-21
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     ++ +++  +L   + P SLE  IG   +    + I D EA +  +    Q +
Sbjct: 247 EEIGAEMDVATEKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYQML 306

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG++DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 307 KEQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 366

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 367 PSRSKQLRDFL 377

[206][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
           RepID=C0XLP2_LACHI
          Length = 389

 Score =  104 bits (259), Expect = 3e-21
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  +    + +
Sbjct: 258 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELL 317

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 318 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 377

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 378 PSRSKQLKDFL 388

[207][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
           11577 RepID=C0WTG9_LACBU
          Length = 389

 Score =  104 bits (259), Expect = 3e-21
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  +    + +
Sbjct: 258 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELL 317

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 318 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 377

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 378 PSRSKQLKDFL 388

[208][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
           Eklund RepID=B1BDC8_CLOBO
          Length = 368

 Score =  104 bits (259), Expect = 3e-21
 Identities = 54/131 (41%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + + ++  ++   + P SLE  IG  ++    + I D EA    E      +
Sbjct: 237 EEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTML 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 297 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 357 PSRSKKLKDYL 367

[209][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
           subsp. larvae BRL-230010 RepID=UPI0001694293
          Length = 367

 Score =  103 bits (258), Expect = 5e-21
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   LS  ++  ++   + P SLE  IG   +    + I D +A    +    + +
Sbjct: 236 EEIAKEMELSTDKVREIMKISQEPVSLETPIGEENDSNLGDFIEDQDALAPADAASYELL 295

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG++DGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 296 KEQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLRH 355

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 356 PSRSKRLKDFL 366

[210][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
           RepID=Q74IZ4_LACJO
          Length = 372

 Score =  103 bits (258), Expect = 5e-21
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +   ++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 241 EEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELL 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 301 KEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+  L+ +L
Sbjct: 361 PSRSNQLKDFL 371

[211][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
           25745 RepID=Q03F68_PEDPA
          Length = 379

 Score =  103 bits (258), Expect = 5e-21
 Identities = 53/131 (40%), Positives = 82/131 (62%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +   ++  +L   + P SLE  IG   +    + I D EA +  +    + +
Sbjct: 248 EEIGAEMDMPSDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 307

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 308 KEQLEGVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 367

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 368 PSRSKQLKDFL 378

[212][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
           6725 RepID=B9MQ36_ANATD
          Length = 417

 Score =  103 bits (258), Expect = 5e-21
 Identities = 53/131 (40%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + ++++  +L   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 286 EEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSML 345

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L +VLDSLN REK+V++ RFG++DGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 346 KEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 405

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 406 PSRSKKLKDFL 416

[213][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
           saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
          Length = 411

 Score =  103 bits (258), Expect = 5e-21
 Identities = 53/131 (40%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + ++++  +L   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 280 EEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSML 339

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L +VLDSLN REK+V++ RFG++DGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 340 KEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 399

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 400 PSRSKKLKDFL 410

[214][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
           RepID=A1UF13_MYCSK
          Length = 319

 Score =  103 bits (258), Expect = 5e-21
 Identities = 52/130 (40%), Positives = 85/130 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE +G+  ++++ +L   + P SL+  +G ++     + I D EA +AE  +I + +
Sbjct: 188 EELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELL 247

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
             D+  VL +L+ RE+QVIR RFG+DDG+ +TL +IG++ G+SRER+RQIE     KL+N
Sbjct: 248 HTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRN 307

Query: 118 KKRNKHLQQY 89
            +R   L+ Y
Sbjct: 308 GERADRLRSY 317

[215][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
           RepID=C4VL08_9LACO
          Length = 364

 Score =  103 bits (258), Expect = 5e-21
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +   ++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 233 EEIGAEMDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEML 292

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 293 KEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 352

Query: 118 KKRNKHLQQYL 86
             R+  L+ +L
Sbjct: 353 PSRSNQLKDFL 363

[216][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
           33200 RepID=C2E6R7_LACJO
          Length = 372

 Score =  103 bits (258), Expect = 5e-21
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +   ++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 241 EEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELL 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 301 KEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+  L+ +L
Sbjct: 361 PSRSNQLKDFL 371

[217][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
           RepID=C2E1K8_9LACO
          Length = 364

 Score =  103 bits (258), Expect = 5e-21
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +   ++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 233 EEIGAEMDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEML 292

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 293 KEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 352

Query: 118 KKRNKHLQQYL 86
             R+  L+ +L
Sbjct: 353 PSRSNQLKDFL 363

[218][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
           RepID=Q042Y7_LACGA
          Length = 373

 Score =  103 bits (258), Expect = 5e-21
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +   ++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 242 EEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+  L+ +L
Sbjct: 362 PSRSNQLKDFL 372

[219][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
           RepID=B0MPW5_9FIRM
          Length = 358

 Score =  103 bits (258), Expect = 5e-21
 Identities = 51/131 (38%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           +E+A+  G+++ R+  +L   + P SLE  IG  ++    + I D +A    E   +  +
Sbjct: 227 QEIADRLGITVDRVREILRISQDPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAASRTLL 286

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L ++L +L PRE++V+R RFG++DGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 287 KEQLSEILGTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRH 346

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 347 PSRSKKLKDFL 357

[220][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
           RepID=A8U8N7_9LACT
          Length = 373

 Score =  103 bits (258), Expect = 5e-21
 Identities = 53/131 (40%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     L  +++  +L   + P SLE  IG   +    + I D +A +  E    + +
Sbjct: 242 EEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPAENAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+++G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKQLKDFL 372

[221][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
           RepID=RPOD_CLOAB
          Length = 378

 Score =  103 bits (258), Expect = 5e-21
 Identities = 52/131 (39%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + + ++  ++   + P SLE  IG  ++    + I D EA    +    + +
Sbjct: 247 EEIAKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPADAAAFRML 306

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L K+L++L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 307 KEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 366

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 367 PSRSKKLKDYL 377

[222][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
          Length = 372

 Score =  103 bits (257), Expect = 6e-21
 Identities = 53/131 (40%), Positives = 81/131 (61%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    L +K++   L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 241 EEIAAEMDLPVKKVREALKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEML 300

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K  L +VLD+L  RE+ V+R RFG+DDG  +TL+E+G + GV+RERIRQIE+ A RKL++
Sbjct: 301 KDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRH 360

Query: 118 KKRNKHLQQYL 86
             R+  L+ +L
Sbjct: 361 PSRSNKLRDFL 371

[223][TOP]
>UniRef100_A8ETJ7 RNA polymerase sigma factor n=1 Tax=Arcobacter butzleri RM4018
           RepID=A8ETJ7_ARCB4
          Length = 626

 Score =  103 bits (257), Expect = 6e-21
 Identities = 55/134 (41%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  GL + ++  V+   K P SLE  IG +++ K  + + D +A T  + ++K+ +
Sbjct: 493 EEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDEDGKFGDFVPDEKAPTPIDNIMKEDL 552

Query: 298 KKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLK 122
           +  ++++L  LN RE+ VIR RFG M+D   +TL+EIG+ L V+RER+RQIES A +KLK
Sbjct: 553 QGQIDQILSQLNEREQAVIRMRFGLMEDASDRTLEEIGKELNVTRERVRQIESSAIKKLK 612

Query: 121 NKKRNKHLQQYLVS 80
           + K  K+L+ Y+ S
Sbjct: 613 HPKVGKNLKNYVES 626

[224][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
           RepID=A4TCQ2_MYCGI
          Length = 329

 Score =  103 bits (257), Expect = 6e-21
 Identities = 52/130 (40%), Positives = 85/130 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE +G+ +++++ +L   + P SL+  +G ++     + I D EA +AE  +I + +
Sbjct: 198 EELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELL 257

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
             D+  VL +L+ RE+QVIR RFG+DDG+ +TL +IG++ G+SRER+RQIE     KL+N
Sbjct: 258 HTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRN 317

Query: 118 KKRNKHLQQY 89
             R   L+ Y
Sbjct: 318 GDRADRLRSY 327

[225][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
           RepID=A4J7B9_DESRM
          Length = 367

 Score =  103 bits (257), Expect = 6e-21
 Identities = 52/131 (39%), Positives = 85/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   +S +++  +L   + P SLE  IG  ++    + I D +A    E+     +
Sbjct: 236 EEIAKEMDISGEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDADARAPAEEASFTLL 295

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++ L++VL +L  RE++V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+   RKL++
Sbjct: 296 REQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRH 355

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 356 PSRSKKLKDYL 366

[226][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
           13335 RepID=C8PAI1_9LACO
          Length = 382

 Score =  103 bits (257), Expect = 6e-21
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +S  ++  +L   + P SLE  IG   +    + I D +A + E+    + +
Sbjct: 251 EEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELL 310

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VLD+L  RE+ V+R RFG++DGR +TL+E+G + GV+RERIRQIE+ A RKL++
Sbjct: 311 KEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 370

Query: 118 KKRNKHLQQYL 86
             R+  L+ +L
Sbjct: 371 PSRSNQLKDFL 381

[227][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Clostridium papyrosolvens DSM 2782
           RepID=C7IFS3_9CLOT
          Length = 359

 Score =  103 bits (257), Expect = 6e-21
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           +E+A+  G+S+ ++  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 228 DEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTLL 287

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L  RE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 288 KEQLIDVLDTLTAREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 347

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 348 PSRSKKLKDYL 358

[228][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
           subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
          Length = 357

 Score =  103 bits (257), Expect = 6e-21
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G+  +++  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 226 EELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTML 285

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 286 KEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 345

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 346 PSRSKKLKDFL 356

[229][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
           RepID=C6PMA8_9THEO
          Length = 357

 Score =  103 bits (257), Expect = 6e-21
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G+  +++  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 226 EELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTML 285

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 286 KEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 345

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 346 PSRSKKLKDFL 356

[230][TOP]
>UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium
           thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS
          Length = 357

 Score =  103 bits (257), Expect = 6e-21
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   +S+ ++  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 226 EEIAKEMDMSVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTML 285

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 286 KEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 345

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 346 PSRSKKLKDFL 356

[231][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
           RepID=B0K6Y0_THEPX
          Length = 357

 Score =  103 bits (257), Expect = 6e-21
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G+  +++  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 226 EELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTML 285

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 286 KEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 345

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 346 PSRSKKLKDFL 356

[232][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
           27755 RepID=B0G307_9FIRM
          Length = 382

 Score =  103 bits (257), Expect = 6e-21
 Identities = 53/131 (40%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    + ++R+  +L   + P SLE  IG  ++    + I D       E   +  +
Sbjct: 251 EEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLL 310

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L++VLD+L  RE++V+R RFGMDDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 311 KEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRH 370

Query: 118 KKRNKHLQQYL 86
             R++ L+ YL
Sbjct: 371 PSRSRKLRDYL 381

[233][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
           SI RepID=A5D3U6_PELTS
          Length = 363

 Score =  103 bits (256), Expect = 8e-21
 Identities = 52/131 (39%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   ++  ++  +L   + P SLE  IG  ++    + I D EA    E+     +
Sbjct: 232 EEIAKEMNITEDKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDHEARAPAEEASFTLL 291

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++ L++VL +L  RE++V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+   RKL++
Sbjct: 292 REQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRH 351

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 352 PSRSKKLKDYL 362

[234][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
           RepID=P77870_HELMO
          Length = 333

 Score =  103 bits (256), Expect = 8e-21
 Identities = 53/131 (40%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+   + + R+  ++   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 202 EEIAKEMDIPVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILL 261

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE+VL++L  RE +V+R RFG+DDGR +TL+E+G+  GV+RERIRQIE+ A RKL++
Sbjct: 262 KEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRH 321

Query: 118 KKRNKHLQQYL 86
             R+K L+ Y+
Sbjct: 322 PSRSKKLKDYV 332

[235][TOP]
>UniRef100_C2FI52 RNA polymerase sigma factor n=2 Tax=Lactobacillus plantarum
           RepID=C2FI52_LACPL
          Length = 368

 Score =  103 bits (256), Expect = 8e-21
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  +    + +
Sbjct: 237 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEGVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 357 PSRSKQLKDFL 367

[236][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
           25644 RepID=C2E8V2_9LACO
          Length = 373

 Score =  103 bits (256), Expect = 8e-21
 Identities = 52/131 (39%), Positives = 82/131 (62%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     L  +++  +L   + P SLE  IG   +    + I D  A +  +    + +
Sbjct: 242 EEIGAEMNLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHAATSPADHAAYELL 301

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ +E VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 302 KEQIESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 362 PSRSKQLKDFL 372

[237][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
           RepID=B1QWY9_CLOBU
          Length = 369

 Score =  103 bits (256), Expect = 8e-21
 Identities = 54/131 (41%), Positives = 82/131 (62%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+++   L + ++  +    + P SLE  IG  ++    + I D EA    E      +
Sbjct: 238 EEISKVMDLPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTML 297

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 298 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 357

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 358 PSRSKKLKDYL 368

[238][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
           DSM 15176 RepID=UPI0001966A7F
          Length = 364

 Score =  102 bits (255), Expect = 1e-20
 Identities = 52/131 (39%), Positives = 84/131 (64%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+AE   +S+ ++  ++   + P SLE  IG  ++    + I D +A    E   +  +
Sbjct: 233 EEIAERLDMSVDKVREIMRVAQEPVSLETPIGEEEDSHLGDFIPDDDAPVPAEAASQTLL 292

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VL +L PRE++V+R RFG++DGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 293 KEQLADVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRH 352

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 353 PSRSKKLRDFL 363

[239][TOP]
>UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
           Az-Fu1 RepID=C1DV68_SULAA
          Length = 586

 Score =  102 bits (255), Expect = 1e-20
 Identities = 49/131 (37%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G+  +++  +L T + P SLE  IG ++     + I D    + E  ++K  +
Sbjct: 453 EEIAKKVGMPAEKVKKILRTSQEPISLETPIGTDEETHLGDFIEDKSVLSPEAHMLKNAL 512

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           +  L++VL +L+ RE+QV+R+RFG++D    TL+++G+  GV+RERIRQIE+ A RKL++
Sbjct: 513 RMQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLRH 572

Query: 118 KKRNKHLQQYL 86
             R K+L+ ++
Sbjct: 573 PHRAKYLKPFI 583

[240][TOP]
>UniRef100_B9K8D5 RNA polymerase sigma factor n=1 Tax=Thermotoga neapolitana DSM 4359
           RepID=B9K8D5_THENN
          Length = 392

 Score =  102 bits (255), Expect = 1e-20
 Identities = 51/131 (38%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G   +++  +L   K   SLE  IG +++    + +AD    + +++ ++  M
Sbjct: 254 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADESVPSPKKEAMRMLM 313

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           +++LEKVL +L+PRE  V+R R+G+ DG+ KTL+E+G+   V+RERIRQIE  A RKL++
Sbjct: 314 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 373

Query: 118 KKRNKHLQQYL 86
             R+K+L+  L
Sbjct: 374 PSRSKYLKSLL 384

[241][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
           YO3AOP1 RepID=B2V7P9_SULSY
          Length = 590

 Score =  102 bits (255), Expect = 1e-20
 Identities = 50/131 (38%), Positives = 87/131 (66%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G+   ++  +L T + P SLE  IG ++     + I D    + E+ ++KQ +
Sbjct: 457 EEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQAL 516

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           +  L++VL +L+ RE+QV+R+RFG++D    TL+++G+  GV+RERIRQIE+ A RKL++
Sbjct: 517 RLQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLRH 576

Query: 118 KKRNKHLQQYL 86
             R K+L+ ++
Sbjct: 577 PHRAKYLKPFI 587

[242][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
           Eklund 17B RepID=B2TMC7_CLOBB
          Length = 374

 Score =  102 bits (255), Expect = 1e-20
 Identities = 54/131 (41%), Positives = 82/131 (62%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+++   L + ++  +    + P SLE  IG  ++    + I D EA    E      +
Sbjct: 243 EEISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTML 302

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 303 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 362

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 363 PSRSKKLKDYL 373

[243][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
           8052 RepID=A6LRQ7_CLOB8
          Length = 376

 Score =  102 bits (255), Expect = 1e-20
 Identities = 54/131 (41%), Positives = 82/131 (62%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+++   L + ++  +    + P SLE  IG  ++    + I D EA    E      +
Sbjct: 245 EEISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTML 304

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 305 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 364

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 365 PSRSKKLKDYL 375

[244][TOP]
>UniRef100_C6VQS5 RNA polymerase sigma factor n=1 Tax=Lactobacillus plantarum JDM1
           RepID=C6VQS5_LACPJ
          Length = 368

 Score =  102 bits (255), Expect = 1e-20
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+     +  +++  +L   + P SLE  IG   +    + I D +A +  +    + +
Sbjct: 237 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELL 296

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ LE VLD+L  RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL++
Sbjct: 297 KEQLEGVLDTLTNREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356

Query: 118 KKRNKHLQQYL 86
             R+K L+ +L
Sbjct: 357 PSRSKQLKDFL 367

[245][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
           RepID=B2V2K8_CLOBA
          Length = 374

 Score =  102 bits (255), Expect = 1e-20
 Identities = 54/131 (41%), Positives = 82/131 (62%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+++   L + ++  +    + P SLE  IG  ++    + I D EA    E      +
Sbjct: 243 EEISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTML 302

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 303 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 362

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 363 PSRSKKLKDYL 373

[246][TOP]
>UniRef100_C0CZA7 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
           15981 RepID=C0CZA7_9CLOT
          Length = 405

 Score =  102 bits (255), Expect = 1e-20
 Identities = 50/130 (38%), Positives = 83/130 (63%)
 Frame = -2

Query: 475 EVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMK 296
           E+AEA G++ KR+  ++ T     SLE  +G        + +AD   ++ E+Q     ++
Sbjct: 275 ELAEAVGMTEKRVEELIQTSGDTVSLETPVGDEDGSSLGDFVADNAGDSTEDQAENVLLR 334

Query: 295 KDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKNK 116
           ++++ +L  LN RE+QVI+ RFG+++GR  TL+E+G    V+RERIRQIE+ A RKL+N 
Sbjct: 335 EEIDSMLQGLNERERQVIKLRFGLENGRPLTLEEVGRQFNVTRERIRQIETAALRKLRNP 394

Query: 115 KRNKHLQQYL 86
            R+K ++ +L
Sbjct: 395 VRSKKVRDFL 404

[247][TOP]
>UniRef100_UPI00016C0A4F RNA polymerase, sigma 70 subunit, RpoD family protein n=1
           Tax=Epulopiscium sp. 'N.t. morphotype B'
           RepID=UPI00016C0A4F
          Length = 364

 Score =  102 bits (254), Expect = 1e-20
 Identities = 52/131 (39%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A    LS+ ++  ++   + P +LE  IG  ++    + +AD +A    E      +
Sbjct: 233 EEIAREMELSVNKVREIMKISQEPVALETPIGEEEDTNLGDFLADEDAPAPAEAAAFTLL 292

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L +VLD+L  RE++V++ RFG+DDGR +TL+E+G    V+RERIRQIE+ A RKL++
Sbjct: 293 KEQLIEVLDTLTDREQKVLKLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLRH 352

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 353 PSRSKKLRDYL 363

[248][TOP]
>UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens
           RepID=Q0SRH3_CLOPS
          Length = 366

 Score =  102 bits (254), Expect = 1e-20
 Identities = 53/131 (40%), Positives = 83/131 (63%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+++   + + ++  +L   + P SLE  IG  ++    + I D +A    E      +
Sbjct: 235 EELSKQMDMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTML 294

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           K+ L  VLD+L PRE++V+R RFG+DDGR +TL+E+G+   V+RERIRQIE+ A RKL++
Sbjct: 295 KEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 354

Query: 118 KKRNKHLQQYL 86
             R+K L+ YL
Sbjct: 355 PSRSKKLKDYL 365

[249][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
           RepID=C0QRZ3_PERMH
          Length = 577

 Score =  102 bits (254), Expect = 1e-20
 Identities = 50/130 (38%), Positives = 87/130 (66%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G+  +++  +L T + P SLE  IG +      + I D    + E+ +++Q +
Sbjct: 445 EEIAKKVGMPPEKVRKILRTSQEPISLETPIGDDDESHLGDFIEDKTVMSPEQHVLRQAL 504

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           ++ LE+VL +L+ RE+QV+R+RFG++D    TL+++G+  GV+RERIRQIE+ A RKL++
Sbjct: 505 RQQLEEVLSTLSEREEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKLRH 564

Query: 118 KKRNKHLQQY 89
             R K+L+ +
Sbjct: 565 PHRAKYLRPF 574

[250][TOP]
>UniRef100_A5IMD4 RNA polymerase sigma factor n=2 Tax=Thermotoga RepID=A5IMD4_THEP1
          Length = 407

 Score =  102 bits (254), Expect = 1e-20
 Identities = 51/131 (38%), Positives = 86/131 (65%)
 Frame = -2

Query: 478 EEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFM 299
           EE+A+  G   +++  +L   K   SLE  IG +++    + +AD    + +++ ++  M
Sbjct: 269 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLM 328

Query: 298 KKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLKN 119
           +++LEKVL +L+PRE  V+R R+G+ DG+ KTL+E+G+   V+RERIRQIE  A RKL++
Sbjct: 329 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 388

Query: 118 KKRNKHLQQYL 86
             R+K+L+  L
Sbjct: 389 PSRSKYLKSLL 399