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[1][TOP]
>UniRef100_B9HS61 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9HS61_POPTR
Length = 324
Score = 208 bits (529), Expect = 2e-52
Identities = 106/138 (76%), Positives = 122/138 (88%), Gaps = 1/138 (0%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GGI IKRSLD ++ASC +YSEPPRLVHRLDRDCSGILVMGRTQTSATVLH+IFREKT
Sbjct: 57 GGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFREKTL 116
Query: 202 SAS-DDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLS 378
+AS DD+G + R+LQRKY ALVIG PRRP+GL++A LGKVVVDNGKSDRIT+V+NS LS
Sbjct: 117 AASNDDVGNKRRILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVVENSQNLS 176
Query: 379 SQHAITEYRVIGSSSHGW 432
SQHA+T+YRVI SSHG+
Sbjct: 177 SQHAVTQYRVI-ESSHGF 193
[2][TOP]
>UniRef100_UPI0001982E23 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001982E23
Length = 476
Score = 201 bits (512), Expect = 2e-50
Identities = 103/138 (74%), Positives = 120/138 (86%), Gaps = 1/138 (0%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GGI IKRSLD +AA+ L+Y+ SEPPRLVHRLDRD SGIL+MGRTQTSAT+LHSIFREKT
Sbjct: 206 GGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTF 265
Query: 202 SASD-DLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLS 378
AS+ D+ T+ R+LQR+Y ALVIG PRRPRGL++A LGKVVVD+GKS+RITIVDN +S
Sbjct: 266 GASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMS 325
Query: 379 SQHAITEYRVIGSSSHGW 432
SQHAITEYRVI SS HG+
Sbjct: 326 SQHAITEYRVIKSSCHGY 343
[3][TOP]
>UniRef100_A7P9Q6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9Q6_VITVI
Length = 340
Score = 201 bits (512), Expect = 2e-50
Identities = 103/138 (74%), Positives = 120/138 (86%), Gaps = 1/138 (0%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GGI IKRSLD +AA+ L+Y+ SEPPRLVHRLDRD SGIL+MGRTQTSAT+LHSIFREKT
Sbjct: 80 GGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTF 139
Query: 202 SASD-DLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLS 378
AS+ D+ T+ R+LQR+Y ALVIG PRRPRGL++A LGKVVVD+GKS+RITIVDN +S
Sbjct: 140 GASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMS 199
Query: 379 SQHAITEYRVIGSSSHGW 432
SQHAITEYRVI SS HG+
Sbjct: 200 SQHAITEYRVIKSSCHGY 217
[4][TOP]
>UniRef100_B9RY90 Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis
RepID=B9RY90_RICCO
Length = 536
Score = 189 bits (481), Expect = 6e-47
Identities = 96/138 (69%), Positives = 115/138 (83%), Gaps = 1/138 (0%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GGI IK S D +AASCL Y+YSEPPRLVHRLDRD SGILVMGRTQTS VLHS+FREKT
Sbjct: 267 GGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMVLHSVFREKTF 326
Query: 202 SASD-DLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLS 378
+AS+ D+G R+LQRKY ALVIG PRR +G+++A LGKVVVD+GKSDRIT+V+N+ S
Sbjct: 327 AASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSDRITVVENAESTS 386
Query: 379 SQHAITEYRVIGSSSHGW 432
QHA+T+YRV+ SSHG+
Sbjct: 387 FQHAVTQYRVM-ESSHGY 403
[5][TOP]
>UniRef100_Q9LT72 RNA pseudourine synthase 4, mitochondrial n=1 Tax=Arabidopsis
thaliana RepID=PUS4_ARATH
Length = 477
Score = 180 bits (456), Expect = 5e-44
Identities = 95/142 (66%), Positives = 113/142 (79%), Gaps = 2/142 (1%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG IK S+D +AASCLK++ SE PRLVHRLDRDCSG+LV+ RTQT+ATVLHSIFRE
Sbjct: 202 AVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFRE 261
Query: 193 KTSSASDDLGTENRV--LQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNS 366
KT+ AS G + V L+RKY ALVIGCP R RG ++A L KVVVD+GKS+RIT+ DN
Sbjct: 262 KTTGAS-AYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNG 320
Query: 367 SLLSSQHAITEYRVIGSSSHGW 432
L+S+QHAITEYRVI SS HG+
Sbjct: 321 ELVSTQHAITEYRVIESSPHGY 342
[6][TOP]
>UniRef100_B9G227 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9G227_ORYSJ
Length = 465
Score = 146 bits (369), Expect = 6e-34
Identities = 80/137 (58%), Positives = 104/137 (75%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG+ IK S+DV+A S + SE PRLVHRLDRDCSGILV+GR Q S ++LH+IFREKT+
Sbjct: 198 GGVGIKNSIDVLA-SMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTA 256
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSS 381
A D GT++ VLQRKY ALVIG PR P+GL++A L K+++ +GKS+R+TI +S+ S
Sbjct: 257 DALAD-GTQH-VLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASV 314
Query: 382 QHAITEYRVIGSSSHGW 432
Q A+TEYRVI S G+
Sbjct: 315 QDALTEYRVIESCPQGY 331
[7][TOP]
>UniRef100_Q69K07 RNA pseudourine synthase 4, mitochondrial n=1 Tax=Oryza sativa
Japonica Group RepID=PUS4_ORYSJ
Length = 448
Score = 146 bits (369), Expect = 6e-34
Identities = 80/137 (58%), Positives = 104/137 (75%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG+ IK S+DV+A S + SE PRLVHRLDRDCSGILV+GR Q S ++LH+IFREKT+
Sbjct: 198 GGVGIKNSIDVLA-SMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTA 256
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSS 381
A D GT++ VLQRKY ALVIG PR P+GL++A L K+++ +GKS+R+TI +S+ S
Sbjct: 257 DALAD-GTQH-VLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASV 314
Query: 382 QHAITEYRVIGSSSHGW 432
Q A+TEYRVI S G+
Sbjct: 315 QDALTEYRVIESCPQGY 331
[8][TOP]
>UniRef100_B8BCS6 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BCS6_ORYSI
Length = 465
Score = 146 bits (368), Expect = 8e-34
Identities = 79/137 (57%), Positives = 104/137 (75%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG+ IK S+DV+A S + SE PRLVHRLDRDCSGILV+GR Q S ++LH+IFREKT+
Sbjct: 198 GGVGIKNSIDVLA-SMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTA 256
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSS 381
A D GT++ VLQRKY ALVIG PR P+GL++A L K+++ +GKS+R+T+ +S+ S
Sbjct: 257 DALAD-GTQH-VLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTVRASSNAASV 314
Query: 382 QHAITEYRVIGSSSHGW 432
Q A+TEYRVI S G+
Sbjct: 315 QDALTEYRVIESCPQGY 331
[9][TOP]
>UniRef100_C4J8T2 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C4J8T2_MAIZE
Length = 272
Score = 144 bits (364), Expect = 2e-33
Identities = 78/137 (56%), Positives = 104/137 (75%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG+ IK S+D++A + SE PRLVHRLDRDCSG+LV+GRTQ SA+++H+IFREKT+
Sbjct: 5 GGVGIKNSIDILAPM-FENGSSEVPRLVHRLDRDCSGVLVLGRTQFSASLMHAIFREKTA 63
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSS 381
A D GT+ +VLQRKY ALVIG PR P+GL++A L KVV+ +G+S+R+T+ S+ S
Sbjct: 64 DALGD-GTQ-QVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSERLTVCAGSNTASV 121
Query: 382 QHAITEYRVIGSSSHGW 432
Q A+TEYRVI S G+
Sbjct: 122 QDALTEYRVIESFPQGY 138
[10][TOP]
>UniRef100_B6U2M4 RNA binding protein n=1 Tax=Zea mays RepID=B6U2M4_MAIZE
Length = 439
Score = 144 bits (364), Expect = 2e-33
Identities = 78/137 (56%), Positives = 104/137 (75%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG+ IK S+D++A + SE PRLVHRLDRDCSG+LV+GRTQ SA+++H+IFREKT+
Sbjct: 195 GGVGIKNSIDILAPM-FENGSSEVPRLVHRLDRDCSGVLVLGRTQFSASLMHAIFREKTA 253
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSS 381
A D GT+ +VLQRKY ALVIG PR P+GL++A L KVV+ +G+S+R+T+ S+ S
Sbjct: 254 DALGD-GTQ-QVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSERLTVCAGSNTASV 311
Query: 382 QHAITEYRVIGSSSHGW 432
Q A+TEYRVI S G+
Sbjct: 312 QDALTEYRVIESFPQGY 328
[11][TOP]
>UniRef100_Q5XET6-2 Isoform 2 of RNA pseudourine synthase 3, mitochondrial n=1
Tax=Arabidopsis thaliana RepID=Q5XET6-2
Length = 326
Score = 116 bits (291), Expect = 7e-25
Identities = 60/138 (43%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE--K 195
G + I S+D +AA+ L + E PRLVHRLDR+ SG+LVMGRT+ S LHS+F +
Sbjct: 49 GNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKG 108
Query: 196 TSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLL 375
+S+ + ++Y ALVIG P+ GL++A L KV++D+GK+DR+ + S
Sbjct: 109 RNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFE 168
Query: 376 SSQHAITEYRVIGSSSHG 429
+SQ AITEY+V+G +G
Sbjct: 169 ASQDAITEYKVLGPKING 186
[12][TOP]
>UniRef100_Q5XET6 RNA pseudourine synthase 3, mitochondrial n=1 Tax=Arabidopsis
thaliana RepID=PUS3_ARATH
Length = 478
Score = 116 bits (291), Expect = 7e-25
Identities = 60/138 (43%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE--K 195
G + I S+D +AA+ L + E PRLVHRLDR+ SG+LVMGRT+ S LHS+F +
Sbjct: 201 GNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKG 260
Query: 196 TSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLL 375
+S+ + ++Y ALVIG P+ GL++A L KV++D+GK+DR+ + S
Sbjct: 261 RNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFE 320
Query: 376 SSQHAITEYRVIGSSSHG 429
+SQ AITEY+V+G +G
Sbjct: 321 ASQDAITEYKVLGPKING 338
[13][TOP]
>UniRef100_UPI0001984024 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984024
Length = 479
Score = 116 bits (290), Expect = 9e-25
Identities = 59/138 (42%), Positives = 90/138 (65%), Gaps = 2/138 (1%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE--K 195
G + + S+D +AA+ L ++Y E P+LVHRLDR+ SG+L+MGRT+ S LH +F + K
Sbjct: 201 GNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFSDINK 260
Query: 196 TSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLL 375
S S ++Y ALVIG P++ G++ A L KV++D+GK++R+ + + S L
Sbjct: 261 AKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLE 320
Query: 376 SSQHAITEYRVIGSSSHG 429
+SQ AITEYRV+G +G
Sbjct: 321 ASQEAITEYRVLGPMING 338
[14][TOP]
>UniRef100_A7Q499 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q499_VITVI
Length = 481
Score = 116 bits (290), Expect = 9e-25
Identities = 59/138 (42%), Positives = 90/138 (65%), Gaps = 2/138 (1%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE--K 195
G + + S+D +AA+ L ++Y E P+LVHRLDR+ SG+L+MGRT+ S LH +F + K
Sbjct: 203 GNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFSDINK 262
Query: 196 TSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLL 375
S S ++Y ALVIG P++ G++ A L KV++D+GK++R+ + + S L
Sbjct: 263 AKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLE 322
Query: 376 SSQHAITEYRVIGSSSHG 429
+SQ AITEYRV+G +G
Sbjct: 323 ASQEAITEYRVLGPMING 340
[15][TOP]
>UniRef100_A9RZN1 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9RZN1_PHYPA
Length = 283
Score = 111 bits (277), Expect = 3e-23
Identities = 62/136 (45%), Positives = 85/136 (62%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG D+ +SLD + + L Y Y+E PRLVHRLD++ SG LV+GRT S L ++ R
Sbjct: 15 AVQGGSDVVKSLDSMMEAALSYNYNEGPRLVHRLDKETSGALVLGRTHQSTVFLQALLRN 74
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
KT S G R Y ALVIG P + G ++A L KVV D+GK D++ +V + S
Sbjct: 75 KTEKISQAPG-------RCYLALVIGVPEKKEGRISAPLAKVVSDSGKLDKMRVV-HGSH 126
Query: 373 LSSQHAITEYRVIGSS 420
++Q AIT+Y+V+GSS
Sbjct: 127 PNAQEAITDYKVLGSS 142
[16][TOP]
>UniRef100_B9SLG9 Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis
RepID=B9SLG9_RICCO
Length = 468
Score = 110 bits (275), Expect = 5e-23
Identities = 56/138 (40%), Positives = 89/138 (64%), Gaps = 2/138 (1%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE--K 195
G + + S+D +AA+ L Y+Y E P+LV RLDR+ SG+L+MGRT+ S L +F + K
Sbjct: 192 GNLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLLLMGRTKESIDHLQWLFSDVNK 251
Query: 196 TSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLL 375
++S + ++Y ALVIG P+ GL+ A L KV++++GK++R+ + +S L
Sbjct: 252 SNSRCKAWNDACKATYQRYWALVIGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQHSGLE 311
Query: 376 SSQHAITEYRVIGSSSHG 429
+SQ A+TEYRV+G +G
Sbjct: 312 ASQEALTEYRVLGPRING 329
[17][TOP]
>UniRef100_A3BUX1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BUX1_ORYSJ
Length = 509
Score = 109 bits (273), Expect = 8e-23
Identities = 58/140 (41%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE--- 192
G + + S+DV+AA+ L Y E P+LVHRLDR+ SG+L+ GRT+ S T LH +F
Sbjct: 233 GNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNL 292
Query: 193 -KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSS 369
KT+S + E ++Y ALVIG P+ G+++A L KV++D+GK++R+ + S
Sbjct: 293 AKTNSQVWNAACE--AYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSG 350
Query: 370 LLSSQHAITEYRVIGSSSHG 429
+ +Q A+T YRV+G + HG
Sbjct: 351 IDGAQEAVTAYRVMGPTIHG 370
[18][TOP]
>UniRef100_Q0J4D4 RNA pseudourine synthase 3, mitochondrial n=2 Tax=Oryza sativa
RepID=PUS3_ORYSJ
Length = 475
Score = 109 bits (273), Expect = 8e-23
Identities = 58/140 (41%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE--- 192
G + + S+DV+AA+ L Y E P+LVHRLDR+ SG+L+ GRT+ S T LH +F
Sbjct: 199 GNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNL 258
Query: 193 -KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSS 369
KT+S + E ++Y ALVIG P+ G+++A L KV++D+GK++R+ + S
Sbjct: 259 AKTNSQVWNAACE--AYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSG 316
Query: 370 LLSSQHAITEYRVIGSSSHG 429
+ +Q A+T YRV+G + HG
Sbjct: 317 IDGAQEAVTAYRVMGPTIHG 336
[19][TOP]
>UniRef100_A9DCN2 Pseudouridine synthase n=1 Tax=Hoeflea phototrophica DFL-43
RepID=A9DCN2_9RHIZ
Length = 329
Score = 70.5 bits (171), Expect = 6e-11
Identities = 46/133 (34%), Positives = 73/133 (54%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R++D + + + + E PRLVHRLDRD +G+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVTRNVDDMLEAW-RNKKGEKPRLVHRLDRDTAGVLVVARTRGAAQALTAAFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+T+ ++ Y ALV G PR G ++ L K D+G DR+ + +
Sbjct: 171 RTT-------------KKTYWALVTGVPRDREGKISTWLVKEATDDG--DRMRVAKHGE- 214
Query: 373 LSSQHAITEYRVI 411
+ HA++ YR+I
Sbjct: 215 PGADHAVSYYRII 227
[20][TOP]
>UniRef100_C0HH71 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C0HH71_MAIZE
Length = 237
Score = 69.3 bits (168), Expect = 1e-10
Identities = 40/100 (40%), Positives = 63/100 (63%), Gaps = 4/100 (4%)
Frame = +1
Query: 142 MGRTQTSATVLH----SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASL 309
MGRT+ S T LH S+ +TSS + + E +KY ALVIG P+ G+++A +
Sbjct: 1 MGRTKESFTRLHWLLTSVNLARTSSQTWNKACE--AYAQKYWALVIGTPKEREGVISAPI 58
Query: 310 GKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIGSSSHG 429
KV++D+GK++R+ + S + +Q AITEYRV+G + +G
Sbjct: 59 SKVLLDDGKAERVILAHPSGIDGAQEAITEYRVMGPTING 98
[21][TOP]
>UniRef100_UPI000038423F COG0564: Pseudouridylate synthases, 23S RNA-specific n=1
Tax=Magnetospirillum magnetotacticum MS-1
RepID=UPI000038423F
Length = 324
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/109 (36%), Positives = 62/109 (56%)
Frame = +1
Query: 94 PRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGC 273
P+LVHRLD+D SG+L++GRT +A+ L + F+ +++ ++ Y ALV G
Sbjct: 131 PKLVHRLDKDTSGVLLLGRTANAASKLAAAFKSRSA-------------RKCYWALVAGV 177
Query: 274 PRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIGSS 420
PR P+G + A L K+ GK+ VD +HA+T YRV+ S+
Sbjct: 178 PRYPQGRIDAPLAKL---PGKAGEKMAVDKE---EGKHAVTYYRVVDST 220
[22][TOP]
>UniRef100_Q0G6Y2 Pseudouridine synthase n=1 Tax=Fulvimarina pelagi HTCC2506
RepID=Q0G6Y2_9RHIZ
Length = 328
Score = 66.2 bits (160), Expect = 1e-09
Identities = 47/133 (35%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHRLDRD SGILV+ RT+ +AT L FRE
Sbjct: 114 AVQGGSGVARHVDDMLEAW-RNKKGEKPRLVHRLDRDTSGILVVARTRGAATALTKAFRE 172
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y A+V G P + G ++ L K +G DR+ I +
Sbjct: 173 RDT-------------KKLYWAVVKGVPAKKEGRISTYLKKEQTPDG--DRMRIARHGD- 216
Query: 373 LSSQHAITEYRVI 411
+ HA++ YRVI
Sbjct: 217 EGADHALSHYRVI 229
[23][TOP]
>UniRef100_C6QGR9 Pseudouridine synthase n=1 Tax=Hyphomicrobium denitrificans ATCC
51888 RepID=C6QGR9_9RHIZ
Length = 313
Score = 65.5 bits (158), Expect = 2e-09
Identities = 43/138 (31%), Positives = 69/138 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG K+ +D + E PRLVHRLDRD +G+L++ +T+ +A L F+
Sbjct: 98 AVQGGTGTKKHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLGRTFQT 157
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
++++ + Y ALV G P+ P+G V A+L K +G DR+
Sbjct: 158 RSAA-------------KTYWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKARPGEQ 202
Query: 373 LSSQHAITEYRVIGSSSH 426
++ HA T Y V+ ++H
Sbjct: 203 DAAMHATTHYSVVDRAAH 220
[24][TOP]
>UniRef100_Q7CZ66 Pseudouridine synthase n=1 Tax=Agrobacterium tumefaciens str. C58
RepID=Q7CZ66_AGRT5
Length = 329
Score = 64.7 bits (156), Expect = 3e-09
Identities = 47/137 (34%), Positives = 73/137 (53%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 113 AVQGGSGVNRHIDGLLEAWTSPK-GEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRE 171
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ + ++ L K +G DR+ I +
Sbjct: 172 RDT-------------KKTYWALVRGVPRKHQDKISTWLVKEQTPDG--DRMRIAKHGE- 215
Query: 373 LSSQHAITEYRVIGSSS 423
+ HAI+ YRVI +++
Sbjct: 216 EGADHAISYYRVIDTAA 232
[25][TOP]
>UniRef100_Q2RQY9 Pseudouridine synthase n=1 Tax=Rhodospirillum rubrum ATCC 11170
RepID=Q2RQY9_RHORT
Length = 330
Score = 64.7 bits (156), Expect = 3e-09
Identities = 45/137 (32%), Positives = 69/137 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG LD + S + E PRLVHRLD+D SG+LV+ RTQ +A L S FR
Sbjct: 113 AVQGGTGTPHHLDGMLESLA--DGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFR- 169
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+R + Y A+V+G P +G + +L KV G+ +R+ I +
Sbjct: 170 ------------SREALKVYWAIVVGRPPMLQGTIKGALAKVA--GGRGERMEINEE--- 212
Query: 373 LSSQHAITEYRVIGSSS 423
+ A+T++RV+ ++
Sbjct: 213 -EGKRAVTDFRVVDQAA 228
[26][TOP]
>UniRef100_Q92QE2 Pseudouridine synthase n=1 Tax=Sinorhizobium meliloti
RepID=Q92QE2_RHIME
Length = 330
Score = 64.3 bits (155), Expect = 4e-09
Identities = 45/133 (33%), Positives = 69/133 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 114 AVQGGSGVNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRE 172
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G DR+ I +
Sbjct: 173 RDT-------------KKTYWALVRGVPRKREDKISTWLVKEPTPDG--DRVRIAKHGE- 216
Query: 373 LSSQHAITEYRVI 411
+ HAI+ YR++
Sbjct: 217 DGADHAISYYRIV 229
[27][TOP]
>UniRef100_B9JFK3 Pseudouridine synthase n=1 Tax=Agrobacterium radiobacter K84
RepID=B9JFK3_AGRRK
Length = 332
Score = 64.3 bits (155), Expect = 4e-09
Identities = 47/137 (34%), Positives = 72/137 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R LD + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 114 AVQGGSGLTRHLDKMLEAWTSKK-GEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRE 172
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y +LV G PR+ ++ L K +G DR+ I +
Sbjct: 173 RDT-------------KKTYWSLVKGVPRKHEDKISTWLVKEATADG--DRMRIAKHGE- 216
Query: 373 LSSQHAITEYRVIGSSS 423
+ HAIT YRV+ +++
Sbjct: 217 DGADHAITYYRVLETAA 233
[28][TOP]
>UniRef100_A8LM87 Pseudouridine synthase n=1 Tax=Dinoroseobacter shibae DFL 12
RepID=A8LM87_DINSH
Length = 348
Score = 63.2 bits (152), Expect = 9e-09
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG +R +D +A + L++E EPPRLVHRLD+D SG+L+M RT+ SA L + FR
Sbjct: 114 GGSGQERHIDGMAEA-LQFELDEPPRLVHRLDKDTSGVLLMARTRRSAAALTAAFRA--- 169
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVV--VDNGKSDRITIVDNSSL- 372
R ++ Y A V G P+ G V +L K G+ +++ +D +
Sbjct: 170 ----------RQTRKIYWAAVAGVPQPQLGTVRYALMKAPGHGKRGEGEKMLCIDPRQMD 219
Query: 373 --LSSQHAITEYRVIGS 417
++ A T+Y V+ +
Sbjct: 220 AHPDAKRATTDYAVLSA 236
[29][TOP]
>UniRef100_B5ZQP1 Pseudouridine synthase n=1 Tax=Rhizobium leguminosarum bv. trifolii
WSM2304 RepID=B5ZQP1_RHILW
Length = 329
Score = 62.8 bits (151), Expect = 1e-08
Identities = 47/137 (34%), Positives = 72/137 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G DR+ I +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE- 214
Query: 373 LSSQHAITEYRVIGSSS 423
+ HAI+ YRVI +++
Sbjct: 215 DGADHAISFYRVIETAA 231
[30][TOP]
>UniRef100_B3PP13 Pseudouridine synthase n=1 Tax=Rhizobium etli CIAT 652
RepID=B3PP13_RHIE6
Length = 330
Score = 62.8 bits (151), Expect = 1e-08
Identities = 46/137 (33%), Positives = 72/137 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 113 AVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRE 171
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G DR+ I +
Sbjct: 172 RDT-------------KKTYWALVKGVPRKHEDKISTWLVKEATADG--DRMRIAKHGE- 215
Query: 373 LSSQHAITEYRVIGSSS 423
+ HAI+ YRV+ +++
Sbjct: 216 DGADHAISFYRVLETAA 232
[31][TOP]
>UniRef100_B0CGF1 Pseudouridine synthase n=1 Tax=Brucella suis ATCC 23445
RepID=B0CGF1_BRUSI
Length = 326
Score = 62.8 bits (151), Expect = 1e-08
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVLARTRGAAQALTASFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 215 PDSDHAVSYYRII 227
[32][TOP]
>UniRef100_A6U892 Pseudouridine synthase n=1 Tax=Sinorhizobium medicae WSM419
RepID=A6U892_SINMW
Length = 330
Score = 62.8 bits (151), Expect = 1e-08
Identities = 44/133 (33%), Positives = 69/133 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 114 AVQGGSGVNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFRE 172
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ + K +G DR+ I +
Sbjct: 173 RDT-------------KKTYWALVRGVPRKREDKISTWVVKEQTPDG--DRVRIAKHGE- 216
Query: 373 LSSQHAITEYRVI 411
+ HAI+ YR++
Sbjct: 217 DGADHAISFYRIV 229
[33][TOP]
>UniRef100_A5FUW0 Pseudouridine synthase n=1 Tax=Acidiphilium cryptum JF-5
RepID=A5FUW0_ACICJ
Length = 324
Score = 62.8 bits (151), Expect = 1e-08
Identities = 44/133 (33%), Positives = 66/133 (49%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A+ GG I R LD + L+++ +E PRLVHRLDRD SG+LV+ R +A L + FR
Sbjct: 109 ATQGGKGIARHLDGML-DALRFDAAERPRLVHRLDRDTSGVLVLARNAFAANRLAAAFR- 166
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
R +++ Y A+V+G P G + L ++ G R D+
Sbjct: 167 ------------GRDMEKTYWAIVVGLPIPMEGQIDLPLARIGGAQGARTRPADRDDE-- 212
Query: 373 LSSQHAITEYRVI 411
+ AIT+YR +
Sbjct: 213 -DAAKAITDYRTL 224
[34][TOP]
>UniRef100_UPI0001B489F4 pseudouridine synthase n=1 Tax=Brucella suis bv. 5 str. 513
RepID=UPI0001B489F4
Length = 326
Score = 62.4 bits (150), Expect = 1e-08
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 215 PDSDHAVSYYRII 227
[35][TOP]
>UniRef100_UPI0001B47D5C ribosomal large subunit pseudouridine synthase C n=1 Tax=Brucella
sp. 83/13 RepID=UPI0001B47D5C
Length = 326
Score = 62.4 bits (150), Expect = 1e-08
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 215 PDSDHAVSYYRII 227
[36][TOP]
>UniRef100_Q6I819 Pseudouridine synthase n=1 Tax=Brucella suis RepID=Q6I819_BRUSU
Length = 326
Score = 62.4 bits (150), Expect = 1e-08
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 215 PDSDHAVSYYRII 227
[37][TOP]
>UniRef100_Q2K820 Pseudouridine synthase n=1 Tax=Rhizobium etli CFN 42
RepID=Q2K820_RHIEC
Length = 317
Score = 62.4 bits (150), Expect = 1e-08
Identities = 44/137 (32%), Positives = 73/137 (53%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 98 AVQGGSGVARHIDQMLEAWISPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRE 156
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y +LV G PR+ ++ L K +G DR+ I +
Sbjct: 157 RDT-------------KKTYWSLVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE- 200
Query: 373 LSSQHAITEYRVIGSSS 423
+ HA++ YRV+ +++
Sbjct: 201 DGADHAVSYYRVVETAA 217
[38][TOP]
>UniRef100_A4YWT8 Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. ORS278
RepID=A4YWT8_BRASO
Length = 458
Score = 62.4 bits (150), Expect = 1e-08
Identities = 42/138 (30%), Positives = 71/138 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + ++ + PRLVHR+DR+ SG L++ +T+ +AT L FR
Sbjct: 238 AVQGGSGMTRHIDQML-EVMRDAKGQKPRLVHRIDRETSGCLLIAKTRFAATHLTGAFRH 296
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K D G+ D I V
Sbjct: 297 RSA-------------RKVYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAHGD 340
Query: 373 LSSQHAITEYRVIGSSSH 426
+ HA+T Y V+ +S++
Sbjct: 341 EGASHAVTYYAVVEASAN 358
[39][TOP]
>UniRef100_Q1YNH2 Pseudouridine synthase n=1 Tax=Aurantimonas manganoxydans SI85-9A1
RepID=Q1YNH2_MOBAS
Length = 328
Score = 62.4 bits (150), Expect = 1e-08
Identities = 45/133 (33%), Positives = 67/133 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +AT L FRE
Sbjct: 114 AVQGGSGLNRHVDKMLEAW-RSRKGEKPRLVHRLDRDTSGVLVVARTRGAATALTKAFRE 172
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y A++ G P G ++ L K +G DR+ +
Sbjct: 173 RDT-------------KKTYWAILKGVPVPHEGRISTFLVKEQTPDG--DRMRTAKHGE- 216
Query: 373 LSSQHAITEYRVI 411
+ HA+T YRVI
Sbjct: 217 EGADHALTHYRVI 229
[40][TOP]
>UniRef100_A9MB16 Pseudouridine synthase n=2 Tax=Brucella RepID=A9MB16_BRUC2
Length = 326
Score = 62.4 bits (150), Expect = 1e-08
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 215 PDSDHAVSYYRII 227
[41][TOP]
>UniRef100_C9VAF8 Pseudouridine synthase n=1 Tax=Brucella neotomae 5K33
RepID=C9VAF8_BRUNE
Length = 326
Score = 62.4 bits (150), Expect = 1e-08
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 215 PDSNHAVSYYRII 227
[42][TOP]
>UniRef100_B2S5L2 Pseudouridine synthase n=8 Tax=Brucella abortus RepID=B2S5L2_BRUA1
Length = 326
Score = 62.4 bits (150), Expect = 1e-08
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 215 PDSDHAVSYYRII 227
[43][TOP]
>UniRef100_C4WJL5 Pseudouridine synthase n=1 Tax=Ochrobactrum intermedium LMG 3301
RepID=C4WJL5_9RHIZ
Length = 326
Score = 62.4 bits (150), Expect = 1e-08
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVTRHIDGMLEAW-RNKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALTAAFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKREDKISTWLVKDQTPDG--DKMRVCQHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 215 PDSDHAVSYYRII 227
[44][TOP]
>UniRef100_C4IQR9 Pseudouridine synthase n=1 Tax=Brucella abortus str. 2308 A
RepID=C4IQR9_BRUAB
Length = 343
Score = 62.4 bits (150), Expect = 1e-08
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 129 AVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFRE 187
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 188 RDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHGE- 231
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 232 PDSDHAVSYYRII 244
[45][TOP]
>UniRef100_C7LBU6 Ribosomal large subunit pseudouridine synthase C n=11 Tax=Brucella
RepID=C7LBU6_BRUMC
Length = 326
Score = 62.4 bits (150), Expect = 1e-08
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 215 PDSDHAVSYYRII 227
[46][TOP]
>UniRef100_Q1MG68 Pseudouridine synthase n=1 Tax=Rhizobium leguminosarum bv. viciae
3841 RepID=Q1MG68_RHIL3
Length = 330
Score = 62.0 bits (149), Expect = 2e-08
Identities = 46/137 (33%), Positives = 72/137 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 113 AVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRE 171
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G DR+ I +
Sbjct: 172 RDT-------------KKTYWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE- 215
Query: 373 LSSQHAITEYRVIGSSS 423
+ HAI+ YRV+ +++
Sbjct: 216 DGADHAISFYRVLETAA 232
[47][TOP]
>UniRef100_C6AYR2 Pseudouridine synthase n=1 Tax=Rhizobium leguminosarum bv. trifolii
WSM1325 RepID=C6AYR2_RHILS
Length = 330
Score = 62.0 bits (149), Expect = 2e-08
Identities = 46/137 (33%), Positives = 72/137 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 113 AVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRE 171
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G DR+ I +
Sbjct: 172 RDT-------------KKTYWALVKGVPRKHEDKISTWLVKEPTADG--DRMRIAKHGE- 215
Query: 373 LSSQHAITEYRVIGSSS 423
+ HAI+ YRV+ +++
Sbjct: 216 DGADHAISFYRVLETAA 232
[48][TOP]
>UniRef100_A7HWU2 Pseudouridine synthase n=1 Tax=Parvibaculum lavamentivorans DS-1
RepID=A7HWU2_PARL1
Length = 330
Score = 62.0 bits (149), Expect = 2e-08
Identities = 42/138 (30%), Positives = 69/138 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG +R LD + L ++ E PRLVHRLDRD SG+LV+ RT +A L F++
Sbjct: 111 AVQGGTKTERHLDGML-DALIFDAKERPRLVHRLDRDTSGVLVLARTAKAAAALAQAFKQ 169
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
K + Q+ Y ALV+G P +G + +L K +++R+
Sbjct: 170 KDA-------------QKIYWALVVGVPVPRQGTIDLALSK--QGGPRAERVFAAKRGD- 213
Query: 373 LSSQHAITEYRVIGSSSH 426
++ A+T + + +++H
Sbjct: 214 EGARDAVTHFSTVSTAAH 231
[49][TOP]
>UniRef100_A5ELJ1 Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. BTAi1
RepID=A5ELJ1_BRASB
Length = 458
Score = 62.0 bits (149), Expect = 2e-08
Identities = 42/138 (30%), Positives = 71/138 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + ++ + PRLVHR+DR+ SG L++ +T+ +AT L FR
Sbjct: 238 AVQGGSGMTRHIDQML-EVMRDAKGQKPRLVHRIDRETSGCLLIAKTRFAATHLTGAFRS 296
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K D G+ D I V
Sbjct: 297 RSA-------------RKIYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAHGD 340
Query: 373 LSSQHAITEYRVIGSSSH 426
+ HA+T Y V+ +S++
Sbjct: 341 EGASHAVTYYAVVEASAN 358
[50][TOP]
>UniRef100_C5YIB1 Putative uncharacterized protein Sb07g027030 n=1 Tax=Sorghum
bicolor RepID=C5YIB1_SORBI
Length = 439
Score = 62.0 bits (149), Expect = 2e-08
Identities = 39/136 (28%), Positives = 65/136 (47%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
G + + S+DV+AA+ L Y E P+L ++ C +
Sbjct: 202 GHLPVHNSMDVLAAAALSYGNKEGPKLTW--NKACEAYV--------------------- 238
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSS 381
+KY ALVIG P+ G++ A + KV++D+GK++R+ + S + +
Sbjct: 239 --------------QKYWALVIGTPKEREGVICAPISKVLLDDGKAERVILAHPSGIDGA 284
Query: 382 QHAITEYRVIGSSSHG 429
Q AITEYRV+G + +G
Sbjct: 285 QEAITEYRVMGPTING 300
[51][TOP]
>UniRef100_C3MB12 Pseudouridine synthase n=1 Tax=Rhizobium sp. NGR234
RepID=C3MB12_RHISN
Length = 330
Score = 61.6 bits (148), Expect = 3e-08
Identities = 44/133 (33%), Positives = 69/133 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 114 AVQGGSGVSRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFRE 172
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y +LV G PR+ ++ L K +G DR+ I +
Sbjct: 173 RDT-------------RKIYWSLVKGVPRKREDRISTWLVKEQTPDG--DRMRIAKHGD- 216
Query: 373 LSSQHAITEYRVI 411
+ HAI+ YR++
Sbjct: 217 DGADHAISYYRIV 229
[52][TOP]
>UniRef100_B9JWI8 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4
RepID=B9JWI8_AGRVS
Length = 330
Score = 61.6 bits (148), Expect = 3e-08
Identities = 44/137 (32%), Positives = 73/137 (53%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 114 AVQGGSGLNRHIDQMLEAWTSKK-GEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRE 172
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ + K ++G DR+ I +
Sbjct: 173 RDT-------------KKTYWALVKGVPRKHDDKISTWVVKEQTEDG--DRMRIARHGE- 216
Query: 373 LSSQHAITEYRVIGSSS 423
+ HA++ YRV+ +++
Sbjct: 217 DGADHAVSYYRVLETAA 233
[53][TOP]
>UniRef100_A6X0P5 Pseudouridine synthase n=1 Tax=Ochrobactrum anthropi ATCC 49188
RepID=A6X0P5_OCHA4
Length = 326
Score = 61.6 bits (148), Expect = 3e-08
Identities = 42/133 (31%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 112 AVQGGSGVSRHVDGMLEAW-RNKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALTTAFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L + +G D++ + +
Sbjct: 171 RDT-------------KKTYWALVKGVPRKREDKISTWLVREQTPDG--DKMRVCQHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 215 PDSDHAVSYYRII 227
[54][TOP]
>UniRef100_A5VQE3 Pseudouridine synthase n=1 Tax=Brucella ovis ATCC 25840
RepID=A5VQE3_BRUO2
Length = 318
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/133 (32%), Positives = 69/133 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHR+DRD SG+LV+ RT+ +A L + FRE
Sbjct: 104 AVQGGSGVTRHIDGMLEAWRSTK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFRE 162
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ALV G PR+ ++ L K +G D++ + +
Sbjct: 163 RDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHGE- 206
Query: 373 LSSQHAITEYRVI 411
S HA++ YR+I
Sbjct: 207 PDSDHAVSYYRII 219
[55][TOP]
>UniRef100_B5J3B9 Pseudouridine synthase n=1 Tax=Octadecabacter antarcticus 307
RepID=B5J3B9_9RHOB
Length = 347
Score = 61.6 bits (148), Expect = 3e-08
Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Frame = +1
Query: 16 SSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREK 195
+ GG R +D +A + L++ Y E PRLVHRLD+D SG+L++ RT+ +A L FR +
Sbjct: 110 TQGGSKQLRHVDGMAEA-LRFGYDEKPRLVHRLDKDTSGVLILARTRMAAKSLTDAFRHR 168
Query: 196 TSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD--RITIV---D 360
+ ++ Y ALV G P G V L K GK D R+ V D
Sbjct: 169 NT-------------EKIYWALVAGVPIPKLGSVKYGLVKQGGHGGKGDNERMKCVHPKD 215
Query: 361 NSSLLSSQHAITEYRVIGS 417
++ A+T Y V+ S
Sbjct: 216 VDKTFGAKRALTNYTVLTS 234
[56][TOP]
>UniRef100_A1USS6 Pseudouridine synthase n=1 Tax=Bartonella bacilliformis KC583
RepID=A1USS6_BARBK
Length = 327
Score = 61.2 bits (147), Expect = 3e-08
Identities = 40/133 (30%), Positives = 72/133 (54%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHRLDR+ SG+LV+ R++++A L + FR
Sbjct: 112 AVQGGSGLTRHVDGMLEAW-RNKKGEKPRLVHRLDRETSGLLVVARSRSAAQALTAAFR- 169
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
R +++ Y ALV G PR+ + ++ + K G D++ + ++
Sbjct: 170 ------------TREMKKIYWALVRGVPRKKQEKISTWMAKETTAQG--DKMRVCEHGE- 214
Query: 373 LSSQHAITEYRVI 411
L + HA++ YR++
Sbjct: 215 LDANHAVSYYRIL 227
[57][TOP]
>UniRef100_B5KDF5 Pseudouridine synthase n=1 Tax=Octadecabacter antarcticus 238
RepID=B5KDF5_9RHOB
Length = 347
Score = 61.2 bits (147), Expect = 3e-08
Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Frame = +1
Query: 16 SSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREK 195
+ GG R +D +A + L++ Y E PRLVHRLD+D SG+LV+ RT+ +A L FR +
Sbjct: 110 TQGGSKQLRHVDGMAEA-LRFGYDERPRLVHRLDKDTSGVLVLARTRMAAKSLTEAFRHR 168
Query: 196 TSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD--RITIV---D 360
+ ++ Y ALV G P G + L K GK D R+ V D
Sbjct: 169 NT-------------EKIYWALVAGVPIPKLGSIKYGLVKQGGHGGKGDNERMKCVHPKD 215
Query: 361 NSSLLSSQHAITEYRVIGS 417
++ A+T Y V+ S
Sbjct: 216 VDKTFGAKRALTNYTVLTS 234
[58][TOP]
>UniRef100_A9IVY6 Pseudouridine synthase n=1 Tax=Bartonella tribocorum CIP 105476
RepID=A9IVY6_BART1
Length = 327
Score = 60.8 bits (146), Expect = 4e-08
Identities = 41/133 (30%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDR+ SG+L++ R++ +A L + FRE
Sbjct: 112 AVQGGSGLTRHIDSML-EVWRNKKGEKPRLVHRLDRETSGVLIVARSRGAAQALTAAFRE 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
R ++ Y ALV G P++ + ++ + K + G D++ + D+
Sbjct: 171 -------------RETKKTYWALVRGVPKKKQDKISTWMVKEMTAQG--DKMRVCDHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YRV+
Sbjct: 215 PDSHHAVSYYRVL 227
[59][TOP]
>UniRef100_Q98N25 Pseudouridine synthase n=1 Tax=Mesorhizobium loti
RepID=Q98N25_RHILO
Length = 326
Score = 60.5 bits (145), Expect = 6e-08
Identities = 43/133 (32%), Positives = 68/133 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R++D + + + + E PRLVHRLDRD SG+LV+ RT+ +A L FR
Sbjct: 112 AVQGGSGVTRNVDDMLEAW-RNQKGEKPRLVHRLDRDTSGVLVVARTRLAAMKLSEAFRA 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
R ++ Y ALV G P + ++ L K ++G DR+ + +
Sbjct: 171 -------------RETKKTYWALVKGVPPKREDKISTWLIKEPTEDG--DRVRVAAHGE- 214
Query: 373 LSSQHAITEYRVI 411
+ HA++ YR+I
Sbjct: 215 KGADHAVSYYRII 227
[60][TOP]
>UniRef100_Q11HT2 Pseudouridine synthase n=1 Tax=Chelativorans sp. BNC1
RepID=Q11HT2_MESSB
Length = 327
Score = 60.5 bits (145), Expect = 6e-08
Identities = 42/133 (31%), Positives = 68/133 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + + E PRLVHRLDRD SG+LV+ RT+ +A L FR
Sbjct: 111 AVQGGSGVNRHVDGMLEAW-RNKRGEKPRLVHRLDRDTSGVLVVARTRLAAVKLTESFRA 169
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
R ++ Y AL+ G P++ G ++ L + +G DR+ I +
Sbjct: 170 -------------RETKKIYWALIKGVPKKAEGRISTWLVRETTPDG--DRMRIAKHGE- 213
Query: 373 LSSQHAITEYRVI 411
+ HA++ YR++
Sbjct: 214 PGADHAVSTYRLV 226
[61][TOP]
>UniRef100_A4U0J7 Pseudouridine synthase n=1 Tax=Magnetospirillum gryphiswaldense
RepID=A4U0J7_9PROT
Length = 333
Score = 60.5 bits (145), Expect = 6e-08
Identities = 37/117 (31%), Positives = 64/117 (54%)
Frame = +1
Query: 70 LKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
L ++ + PRLVHRLD+D SG+L++GR+ +A L + F+ +R ++
Sbjct: 132 LMFDRDDRPRLVHRLDKDTSGVLLLGRSANAAAKLAAAFK-------------SRAARKC 178
Query: 250 YRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIGSS 420
Y ALV+G P+ +G + A+L K+ G++ VD + A+T YRV+ ++
Sbjct: 179 YWALVVGVPKLRQGRIDAALAKL---PGRAGEKMAVDED---EGKRAVTWYRVVDNA 229
[62][TOP]
>UniRef100_Q211J3 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisB18
RepID=Q211J3_RHOPB
Length = 501
Score = 60.1 bits (144), Expect = 7e-08
Identities = 39/137 (28%), Positives = 70/137 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG R +D++ ++ + PRLVHRLD++ +G L++ +T+ +AT L FRE
Sbjct: 281 AVQGGSGTTRHVDLML-EVMRDAKGQKPRLVHRLDKETAGCLLIAKTRFAATALTGAFRE 339
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K + + D I +
Sbjct: 340 RSA-------------RKVYWALVAGVPKPKQGRISTYLAK---EESEDDTIMRIAEHGD 383
Query: 373 LSSQHAITEYRVIGSSS 423
+ HA+T Y V+ +S+
Sbjct: 384 EGASHAVTYYAVVETSA 400
[63][TOP]
>UniRef100_C8SWC1 Pseudouridine synthase, RluA family n=1 Tax=Mesorhizobium
opportunistum WSM2075 RepID=C8SWC1_9RHIZ
Length = 326
Score = 59.7 bits (143), Expect = 1e-07
Identities = 44/133 (33%), Positives = 67/133 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R++D + + + + E PRLVHRLDRD SG+LV+ RT+ +A L FR
Sbjct: 112 AVQGGSGVTRNVDDMLEAW-RNQKGEKPRLVHRLDRDTSGVLVVARTRLAAMKLSEAFRA 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
R ++ Y ALV G P + ++ L K +G DR+ I +
Sbjct: 171 -------------RETKKTYWALVKGVPPKREDKISTWLIKEPTPDG--DRVRIAAHGE- 214
Query: 373 LSSQHAITEYRVI 411
+ HA++ YR+I
Sbjct: 215 KGADHAVSYYRII 227
[64][TOP]
>UniRef100_Q11DK7 Pseudouridine synthase n=1 Tax=Chelativorans sp. BNC1
RepID=Q11DK7_MESSB
Length = 343
Score = 59.3 bits (142), Expect = 1e-07
Identities = 38/106 (35%), Positives = 52/106 (49%)
Frame = +1
Query: 94 PRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGC 273
P +VHRLDRD SG++V+ +T + VL F + L+R Y ALV G
Sbjct: 143 PGIVHRLDRDTSGVMVVAKTDQAHRVLAEAFADHGQDGD---------LERAYVALVWGV 193
Query: 274 PRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
PRR GLV A LG+ D + V ++HA+T Y V+
Sbjct: 194 PRRISGLVDAPLGRSASDR----TLRAVVPQGRADARHAVTHYTVL 235
[65][TOP]
>UniRef100_Q07KQ7 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisA53
RepID=Q07KQ7_RHOP5
Length = 458
Score = 59.3 bits (142), Expect = 1e-07
Identities = 40/137 (29%), Positives = 69/137 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG R +D++ ++ + PRLVHRLD++ +G L++ +T+ +AT L FR
Sbjct: 238 AVQGGSGTTRHVDLML-EVMRDSKGQKPRLVHRLDKETAGCLLVAKTRFAATALTGSFRS 296
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K D + D I V
Sbjct: 297 RSA-------------RKVYWALVAGVPKPKQGRISTYLAK---DESEDDSIMRVAAHGD 340
Query: 373 LSSQHAITEYRVIGSSS 423
+ HA+T Y V+ +S+
Sbjct: 341 EGASHAVTYYAVVETSA 357
[66][TOP]
>UniRef100_B6IQX5 Pseudouridine synthase n=1 Tax=Rhodospirillum centenum SW
RepID=B6IQX5_RHOCS
Length = 336
Score = 59.3 bits (142), Expect = 1e-07
Identities = 41/133 (30%), Positives = 68/133 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A+ GG + + LD + LK+E P+LVHRLD+D SG LV+ R+ +A L + FR
Sbjct: 118 ATQGGTNQVKHLDAML-DALKFEAEGRPKLVHRLDKDTSGCLVLARSAAAAAKLTAAFR- 175
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+R ++ Y A+ +G P+ +G + + K G +R+T+ ++ +
Sbjct: 176 ------------SREARKIYWAVTVGVPKPMKGRIDLPVAKEAGTRG--ERMTVDEDEGV 221
Query: 373 LSSQHAITEYRVI 411
HAIT Y V+
Sbjct: 222 ----HAITYYTVL 230
[67][TOP]
>UniRef100_Q0FAA8 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium HTCC2255
RepID=Q0FAA8_9RHOB
Length = 348
Score = 58.5 bits (140), Expect = 2e-07
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG R +D ++A+ LK++ P+LVHRLD+D SG+L++ RT +A+ L F
Sbjct: 111 AVQGGSGQMRHVDGLSAA-LKFDLENKPKLVHRLDKDTSGVLLLARTGLAASGLTKAF-- 167
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKV--VVDNGKSDRITIVDNS 366
++R ++ Y A V GCP G + L K NG +++ + S
Sbjct: 168 -----------QSRETRKIYWAAVAGCPHPKIGTIKYGLIKAGGHGPNGSGEKMQCIHPS 216
Query: 367 SLL---SSQHAITEYRVI 411
+ ++HA T+Y V+
Sbjct: 217 EVTDMPDAKHATTDYTVL 234
[68][TOP]
>UniRef100_C7D6Y4 Pseudouridine synthase n=1 Tax=Thalassiobium sp. R2A62
RepID=C7D6Y4_9RHOB
Length = 347
Score = 58.5 bits (140), Expect = 2e-07
Identities = 40/101 (39%), Positives = 51/101 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
AS GG R LD +A + LK++Y E PRLVHRLDRD SG+ +M RT+ A + F+E
Sbjct: 110 ASQGGSKQVRHLDGLAEA-LKFDYFEKPRLVHRLDRDTSGVFIMARTREIAKAMSDAFKE 168
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 315
R ++ Y A V G P G V L K
Sbjct: 169 -------------RETRKIYWAAVGGVPHPAMGTVRWGLIK 196
[69][TOP]
>UniRef100_A3WVV1 Pseudouridine synthase n=1 Tax=Nitrobacter sp. Nb-311A
RepID=A3WVV1_9BRAD
Length = 380
Score = 58.5 bits (140), Expect = 2e-07
Identities = 40/137 (29%), Positives = 70/137 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + ++ + PRLVHRLDR+ +G L++ RT+ +AT L FR
Sbjct: 160 AVQGGSGLSRHIDGMLET-MRDAKGQRPRLVHRLDRETAGCLLIARTRFAATALTGAFRH 218
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K + + + I V
Sbjct: 219 RSA-------------RKIYWALVAGVPKPKQGRISTYLAK---EENEEESIMRVAAHGD 262
Query: 373 LSSQHAITEYRVIGSSS 423
+ HA+T Y V+ +S+
Sbjct: 263 EGASHAVTYYAVVETSA 279
[70][TOP]
>UniRef100_Q6N4X5 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris
RepID=Q6N4X5_RHOPA
Length = 455
Score = 58.2 bits (139), Expect = 3e-07
Identities = 40/136 (29%), Positives = 67/136 (49%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG R +D + L+ + PRLVHR+D++ +G L++ +T+ +AT L FR
Sbjct: 235 AVQGGSGTTRHIDQML-EVLRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRH 293
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K D + D I V
Sbjct: 294 RSA-------------RKIYWALVAGVPKPKQGRISTYLAK---DESEEDSIMRVAKHGD 337
Query: 373 LSSQHAITEYRVIGSS 420
+ HA+T Y V+ +S
Sbjct: 338 DGASHAVTYYAVVETS 353
[71][TOP]
>UniRef100_Q134Y4 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisB5
RepID=Q134Y4_RHOPS
Length = 444
Score = 58.2 bits (139), Expect = 3e-07
Identities = 39/137 (28%), Positives = 69/137 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG R +D++ ++ + PRLVHR+D++ +G L++ +T+ +AT L FR
Sbjct: 224 AVQGGSGTTRHIDLML-EVMRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRS 282
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K D + D I V
Sbjct: 283 RSA-------------RKIYWALVAGVPKPKQGRISTYLAK---DESEDDSIMRVAAHGD 326
Query: 373 LSSQHAITEYRVIGSSS 423
+ HA+T Y V+ +S+
Sbjct: 327 DGASHAVTYYAVVETSA 343
[72][TOP]
>UniRef100_B8EL77 Pseudouridine synthase n=1 Tax=Methylocella silvestris BL2
RepID=B8EL77_METSB
Length = 349
Score = 58.2 bits (139), Expect = 3e-07
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG ++R +D + AS L E + P LVHRLDRD SG+L++ +T+ A L IFR
Sbjct: 108 AVQGGSGMRRHIDGMLAS-LPNERGDRPVLVHRLDRDTSGVLLIAKTRKMAADLGEIFR- 165
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+R Q+ Y ALV G P+ +G ++ L K + + R + + +S+
Sbjct: 166 ------------SRQAQKIYWALVEGVPKPAQGKISLFLAKGEGMDARGPRRSDEERASM 213
Query: 373 ----------LSSQHAITEYRVIGSSS 423
+QH++T Y + + S
Sbjct: 214 EKMRVAKHGDEDAQHSVTYYATVDTFS 240
[73][TOP]
>UniRef100_C6W1R5 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053
RepID=C6W1R5_DYAFD
Length = 343
Score = 57.8 bits (138), Expect = 4e-07
Identities = 36/106 (33%), Positives = 55/106 (51%)
Frame = +1
Query: 94 PRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGC 273
P LVHR+D+D SG+LV+ +T+ + T L S F + + ++R Y AL+ G
Sbjct: 148 PGLVHRIDKDTSGLLVIAKTEFAMTFLASQFADHS-------------IERTYHALIWGE 194
Query: 274 PRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
P+ +G +T +G+ D D VD S +HA+T Y VI
Sbjct: 195 PKAEKGTITGHVGRSARDRRVMD--VYVDGS---QGKHAVTHYEVI 235
[74][TOP]
>UniRef100_B0U937 Pseudouridine synthase n=1 Tax=Methylobacterium sp. 4-46
RepID=B0U937_METS4
Length = 469
Score = 57.4 bits (137), Expect = 5e-07
Identities = 43/133 (32%), Positives = 65/133 (48%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG KR +D + + L+ + PRLVHRLD+D +G LV+ +T+ +A L FR
Sbjct: 247 AVQGGSGTKRHVDGLLEA-LRAPDGQKPRLVHRLDKDTAGCLVIAKTRLAAATLAKTFR- 304
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+R ++ Y AL G P+ +G V+ L K V G++D V
Sbjct: 305 ------------SRAARKIYWALAAGVPKVRQGRVSTYLAKEEV--GEADARMRVAQHGD 350
Query: 373 LSSQHAITEYRVI 411
+ HA+T Y V+
Sbjct: 351 EGASHALTYYAVV 363
[75][TOP]
>UniRef100_A1URK8 Pseudouridine synthase n=1 Tax=Bartonella bacilliformis KC583
RepID=A1URK8_BARBK
Length = 336
Score = 57.4 bits (137), Expect = 5e-07
Identities = 35/106 (33%), Positives = 57/106 (53%)
Frame = +1
Query: 94 PRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGC 273
P +VHRLD++ SG++V+ + + L + F + + VL R+Y AL+ G
Sbjct: 132 PGIVHRLDKNTSGVIVVAKNDLAHKGLSAQFSDHGRTG---------VLDRRYHALIWGS 182
Query: 274 PRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
P R G++TASLG+ D K V +S + ++HA+T + VI
Sbjct: 183 PNRNIGVITASLGRARYDRTKQ----AVIHSHNIYARHAVTHFSVI 224
[76][TOP]
>UniRef100_Q68XB2 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Rickettsia
typhi RepID=RLUC_RICTY
Length = 303
Score = 57.4 bits (137), Expect = 5e-07
Identities = 42/135 (31%), Positives = 74/135 (54%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A+ GG I S+D A L Y+ ++ +LVHRLD++ SG+L++ + S+ LH F+E
Sbjct: 108 ATQGGSKINLSIDS-ALKYLNYQGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDAFKE 165
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
K ++ +KY A+ G P + G+V +++GK G+ +IT +D+
Sbjct: 166 K-------------LVIKKYFAITYGRPVKNVGIVKSNIGK---SKGRMFKITDIDSD-- 207
Query: 373 LSSQHAITEYRVIGS 417
+ + AIT Y+++ S
Sbjct: 208 -NGKLAITYYKLLKS 221
[77][TOP]
>UniRef100_Q3SST6 Pseudouridine synthase n=1 Tax=Nitrobacter winogradskyi Nb-255
RepID=Q3SST6_NITWN
Length = 412
Score = 57.0 bits (136), Expect = 6e-07
Identities = 38/137 (27%), Positives = 70/137 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + ++ + PRLVHRLDR+ +G L++ +T+ +AT L FR
Sbjct: 192 AVQGGSGLSRHIDGMLET-MRDAKGQRPRLVHRLDRETAGCLLIAKTRFAATALTGAFRH 250
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K + + + I +
Sbjct: 251 RSA-------------RKIYWALVAGVPKPKQGRISTYLAK---EENEEESIMRIAAHGD 294
Query: 373 LSSQHAITEYRVIGSSS 423
+ HA+T Y V+ +S+
Sbjct: 295 EGASHAVTYYAVVETSA 311
[78][TOP]
>UniRef100_A9HLV5 Pseudouridine synthase n=1 Tax=Gluconacetobacter diazotrophicus PAl
5 RepID=A9HLV5_GLUDA
Length = 325
Score = 57.0 bits (136), Expect = 6e-07
Identities = 38/133 (28%), Positives = 64/133 (48%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG I +D + + PRLVHR+DRD SG+L++ RT A L + FR
Sbjct: 112 GGPGIIHHVDAMLDGLKDQDDDPRPRLVHRIDRDTSGLLLLARTPGVAAKLAASFR---- 167
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSS 381
R +++ Y A+V+G P G++ L ++ G +T+V + +
Sbjct: 168 ---------GRDVRKTYWAIVVGRPSPASGVIDQPLARLGAGPG---ALTVVASRKDADA 215
Query: 382 QHAITEYRVIGSS 420
HA++EY V+ ++
Sbjct: 216 AHALSEYEVLDAA 228
[79][TOP]
>UniRef100_A8TZH4 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199
RepID=A8TZH4_9PROT
Length = 331
Score = 57.0 bits (136), Expect = 6e-07
Identities = 42/130 (32%), Positives = 66/130 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG I + +D A L ++ E PRLVHRLD+D SG+L++GR+ +A L FR
Sbjct: 114 AVQGGSGITKHVDG-ALDGLMFDAKERPRLVHRLDKDTSGVLLVGRSYQAARRLTEAFRA 172
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
K++ + Y ALV+G P+ G + ++GK+ G++ +D L
Sbjct: 173 KSA-------------MKIYWALVVGEPKPNAGSIEGAIGKL---PGRAGEKMAID---L 213
Query: 373 LSSQHAITEY 402
+ + A T Y
Sbjct: 214 ENGKRAFTRY 223
[80][TOP]
>UniRef100_UPI0001903DB3 RNA-pseudouridine synthase protein, ribosomal large subunit C n=1
Tax=Rhizobium etli 8C-3 RepID=UPI0001903DB3
Length = 303
Score = 56.6 bits (135), Expect = 8e-07
Identities = 39/112 (34%), Positives = 57/112 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L + FRE
Sbjct: 66 AVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRE 124
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRI 348
+ + ++ Y ALV G PR+ ++ L K +G RI
Sbjct: 125 RDT-------------KKTYWALVKGVPRKHEDKISTWLVKEATADGDRMRI 163
[81][TOP]
>UniRef100_B9QXV5 Pseudouridine synthase n=1 Tax=Labrenzia alexandrii DFL-11
RepID=B9QXV5_9RHOB
Length = 340
Score = 56.6 bits (135), Expect = 8e-07
Identities = 38/136 (27%), Positives = 66/136 (48%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG +KR LD + + PRLVHRLDR+ SGI+++ RT+ +A L FR
Sbjct: 115 AVQGGSGLKRHLDGML-DAFTDQKGNKPRLVHRLDRETSGIILVARTRQAAQELTKAFRH 173
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y ++ G P+ +G ++ L + + + +R+ +V
Sbjct: 174 RNT-------------RKVYWTILAGVPKPHQGRISTFLAR----DEEEERMQVVRQGGA 216
Query: 373 LSSQHAITEYRVIGSS 420
+QHA++ Y V S
Sbjct: 217 DDAQHAVSLYSVFEKS 232
[82][TOP]
>UniRef100_Q6FZF3 Pseudouridine synthase n=1 Tax=Bartonella quintana
RepID=Q6FZF3_BARQU
Length = 327
Score = 56.2 bits (134), Expect = 1e-06
Identities = 39/133 (29%), Positives = 68/133 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R D + + + E PRLVHRLDR+ SG+L++ R++ +A L + FR
Sbjct: 112 AVQGGSGLTRHFDSML-EVWRNKKGEKPRLVHRLDRETSGVLIVARSRGAAQTLTAAFRA 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
R ++ Y ALV G P++ + ++ + K + G D++ + ++
Sbjct: 171 -------------RETKKTYWALVRGVPKKKQDKISTWVVKDITAQG--DKMCVCEHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YRV+
Sbjct: 215 PDSNHAVSYYRVL 227
[83][TOP]
>UniRef100_Q2IXM0 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris HaA2
RepID=Q2IXM0_RHOP2
Length = 453
Score = 56.2 bits (134), Expect = 1e-06
Identities = 36/137 (26%), Positives = 69/137 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + +D++ ++ + PRLVHR+D++ +G L++ +T+ +AT L FR
Sbjct: 233 AVQGGSGTTKHIDLML-EVMRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRH 291
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K + + D I +
Sbjct: 292 RSA-------------RKIYWALVAGVPKPKQGRISTYLAK---EESEDDSIMRIAEHGD 335
Query: 373 LSSQHAITEYRVIGSSS 423
+ HA+T Y V+ +S+
Sbjct: 336 EGASHAVTYYAVVETSA 352
[84][TOP]
>UniRef100_Q1QN01 Pseudouridine synthase n=1 Tax=Nitrobacter hamburgensis X14
RepID=Q1QN01_NITHX
Length = 411
Score = 56.2 bits (134), Expect = 1e-06
Identities = 39/137 (28%), Positives = 68/137 (49%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + PRLVHRLDR+ +G L++ +T+ +AT L FR
Sbjct: 191 AVQGGSGLSRHIDGMLEVMCDAK-GQRPRLVHRLDRETAGCLLVAKTRFAATALTGSFRH 249
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K + + D I +
Sbjct: 250 RSA-------------RKIYWALVAGVPKPKQGRISTYLAK---EESEEDSIMRIAAHGD 293
Query: 373 LSSQHAITEYRVIGSSS 423
+ HA+T Y V+ +S+
Sbjct: 294 EGASHAVTYYAVVETSA 310
[85][TOP]
>UniRef100_B6JEZ4 Pseudouridine synthase n=1 Tax=Oligotropha carboxidovorans OM5
RepID=B6JEZ4_OLICO
Length = 412
Score = 56.2 bits (134), Expect = 1e-06
Identities = 39/137 (28%), Positives = 69/137 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + ++ + PRLVHRLDR+ SG L++ +T+ +A+ L FR
Sbjct: 192 AVQGGSGLTRHVDGML-EVMRDAKGQRPRLVHRLDRETSGCLLIAKTRFAASTLTGSFRH 250
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K + + D I +
Sbjct: 251 RSA-------------RKIYWALVAGVPKPKQGRISTYLAK---EENEEDSIMRIAAHGD 294
Query: 373 LSSQHAITEYRVIGSSS 423
+ HA+T Y V+ +S+
Sbjct: 295 EGAAHAVTYYAVVEASA 311
[86][TOP]
>UniRef100_B3QB01 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris TIE-1
RepID=B3QB01_RHOPT
Length = 455
Score = 56.2 bits (134), Expect = 1e-06
Identities = 39/136 (28%), Positives = 67/136 (49%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG R +D + L+ + PRLVHR+D++ +G L++ +T+ +AT L FR
Sbjct: 235 AVQGGSGTTRHIDQML-EVLRDAKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRH 293
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K + + D I V
Sbjct: 294 RSA-------------RKIYWALVAGVPKPKQGRISTYLAK---EESEDDSIMRVAKHGD 337
Query: 373 LSSQHAITEYRVIGSS 420
+ HA+T Y V+ +S
Sbjct: 338 DGASHAVTYYAVVETS 353
[87][TOP]
>UniRef100_A3JN53 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium HTCC2150
RepID=A3JN53_9RHOB
Length = 347
Score = 55.8 bits (133), Expect = 1e-06
Identities = 35/98 (35%), Positives = 53/98 (54%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG KR +D ++ + L+++ E PRLVHRLD+D SG+L++ R Q SA+ L ++FR + S
Sbjct: 113 GGSGQKRHIDGLSEA-LRFDSDEKPRLVHRLDKDTSGVLLLARNQRSASELTAVFRSRES 171
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 315
++ Y A V G P G + L K
Sbjct: 172 -------------RKIYWAAVGGVPHPKMGTIRFGLVK 196
[88][TOP]
>UniRef100_A6KXU2 Pseudouridine synthase n=2 Tax=Bacteroides RepID=A6KXU2_BACV8
Length = 358
Score = 55.5 bits (132), Expect = 2e-06
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Frame = +1
Query: 73 KYEYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
KY+ ++P LVHR+D+D SG+LV+ +T + T L F KT+ +RK
Sbjct: 152 KYDPNDPQVGLVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT-------------KRK 198
Query: 250 YRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
Y ALV G G + ++G+ DR+ + S +HA+T YRV+
Sbjct: 199 YNALVWGVVENNEGTIEGNIGR-----NPKDRMQMAVLSDPAQGKHAVTHYRVL 247
[89][TOP]
>UniRef100_B6R0Y5 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. JE062
RepID=B6R0Y5_9RHOB
Length = 349
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/136 (29%), Positives = 70/136 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG +KR +D + + + PRLVHRLDR+ SGIL++ +T+ +A L FR
Sbjct: 131 AVQGGSGLKRHVDGML-DAFTNQKGDKPRLVHRLDRETSGILLVAKTRRAAQELTKAFRH 189
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y A+V G P+ +G ++ L + D G+ +R+ + +
Sbjct: 190 RNT-------------RKIYWAMVAGVPKPRQGRISTYLAR---DEGE-ERMRVARHGD- 231
Query: 373 LSSQHAITEYRVIGSS 420
+QHA++ Y V+ S
Sbjct: 232 DEAQHAVSLYNVVEQS 247
[90][TOP]
>UniRef100_A9EHL2 Pseudouridine synthase n=2 Tax=Phaeobacter gallaeciensis
RepID=A9EHL2_9RHOB
Length = 348
Score = 55.5 bits (132), Expect = 2e-06
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + +D ++A+ L+++ E PRLVHRLD+D SG+LV+ RT+ +A L + FR
Sbjct: 111 AVQGGSGTTKHVDGLSAA-LQFDAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFR- 168
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVV--VDNGKSDRITIVDNS 366
+R ++ Y ALV G P G + L K +G+ +++ + ++
Sbjct: 169 ------------HRATRKIYWALVAGVPTPYLGEIKCGLVKAPGHGKSGEGEKMIAIHSN 216
Query: 367 SL-------LSSQHAITEYRV 408
+ S H T YRV
Sbjct: 217 EVDSTPGAKRSHTHYATLYRV 237
[91][TOP]
>UniRef100_Q89JB7 Pseudouridine synthase n=1 Tax=Bradyrhizobium japonicum
RepID=Q89JB7_BRAJA
Length = 405
Score = 55.1 bits (131), Expect = 2e-06
Identities = 37/138 (26%), Positives = 68/138 (49%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG R +D + ++ + PRLVHR+D+D SG L++ +T+ +A+ L FR
Sbjct: 185 AVQGGSGTTRHIDQML-EVMRDSKGQKPRLVHRIDKDTSGCLLIAKTRFAASHLTGAFRS 243
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+++ ++ Y ALV G P+ +G ++ L K + + D I +
Sbjct: 244 RSA-------------RKVYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQHGD 287
Query: 373 LSSQHAITEYRVIGSSSH 426
+ HA+T Y V+ ++ +
Sbjct: 288 EGASHAVTYYAVVETAGN 305
[92][TOP]
>UniRef100_Q5FQE0 Pseudouridine synthase n=1 Tax=Gluconobacter oxydans
RepID=Q5FQE0_GLUOX
Length = 335
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/102 (34%), Positives = 54/102 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A+ GG I + +D++ L+ E + PRLVHR+DRD SGIL++ RT A L + FR
Sbjct: 107 ATQGGPGITKHVDMMLDG-LRTEGGDRPRLVHRIDRDTSGILLIARTPGVAAKLAAAFR- 164
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKV 318
R +++ Y A+V+G P G++ L K+
Sbjct: 165 ------------GRDVEKTYWAVVVGRPSPESGIIDQPLAKI 194
[93][TOP]
>UniRef100_C6AE97 Pseudouridine synthase n=1 Tax=Bartonella grahamii as4aup
RepID=C6AE97_BARGA
Length = 327
Score = 55.1 bits (131), Expect = 2e-06
Identities = 38/133 (28%), Positives = 69/133 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDR+ SG+L++ R++ +A L + FR
Sbjct: 112 AVQGGSGLTRHMDSML-EVWRNKKGEKPRLVHRLDRETSGVLIVARSRGAAQSLTAAFRA 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
R ++ Y ALV G P++ + ++ + K + G D++ + ++
Sbjct: 171 -------------RETKKTYWALVRGVPKKKQDKISTWMVKEMTAQG--DKMRVCEHGE- 214
Query: 373 LSSQHAITEYRVI 411
+ HA++ YRV+
Sbjct: 215 PDAHHAVSYYRVL 227
[94][TOP]
>UniRef100_B8IK79 Pseudouridine synthase n=1 Tax=Methylobacterium nodulans ORS 2060
RepID=B8IK79_METNO
Length = 457
Score = 55.1 bits (131), Expect = 2e-06
Identities = 41/133 (30%), Positives = 64/133 (48%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG KR +D + + L+ + PRLVHRLD+D +G LV+ +++ +A L FR
Sbjct: 235 AVQGGSGTKRHVDGLLEA-LRTPDGQKPRLVHRLDKDTAGCLVVAKSRLAAATLAKTFR- 292
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+R ++ Y AL G PR +G ++ L K + G +D V
Sbjct: 293 ------------SRAARKIYWALAAGVPRVRQGRISTYLAK--EEMGDADARMRVAQHGD 338
Query: 373 LSSQHAITEYRVI 411
+ HA+T Y V+
Sbjct: 339 EGASHALTYYAVV 351
[95][TOP]
>UniRef100_Q6G2Z6 Pseudouridine synthase n=1 Tax=Bartonella henselae
RepID=Q6G2Z6_BARHE
Length = 327
Score = 54.7 bits (130), Expect = 3e-06
Identities = 38/133 (28%), Positives = 70/133 (52%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + R +D + + + E PRLVHRLDR+ SG+L++ R++ +A L + FR
Sbjct: 112 AVQGGSGLTRHVDSMLR-VWRNKKGEKPRLVHRLDRETSGVLIVARSRGAAQALTTAFR- 169
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
R ++ Y ALV G P++ + ++ + K + + + D++ + ++
Sbjct: 170 ------------TRETKKTYWALVRGVPKKKQDKISTWMVKDI--STQVDKMRVCEHGE- 214
Query: 373 LSSQHAITEYRVI 411
S HA++ YRV+
Sbjct: 215 PDSYHAVSYYRVV 227
[96][TOP]
>UniRef100_Q5LW27 Pseudouridine synthase n=1 Tax=Ruegeria pomeroyi RepID=Q5LW27_SILPO
Length = 347
Score = 54.7 bits (130), Expect = 3e-06
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG R +D ++ + L++ E PRLVHRLD+D SG+LV+ RT+ +A L + FR
Sbjct: 110 AVQGGSGQTRHVDGLSEA-LRFGNDENPRLVHRLDKDTSGVLVLARTREAAARLTAAFRH 168
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVD--NGKSDRITIVDNS 366
+ + ++ Y ALV G P G + L K G+ +++ +V S
Sbjct: 169 RNT-------------RKIYWALVAGVPTPYLGEIKTGLVKAGGHGARGEGEKMNVVHLS 215
Query: 367 SLLSSQHA-------ITEYRVIGSSS 423
L ++ A T YRV G +S
Sbjct: 216 ELDATPGAKRAHTYYATLYRVAGRAS 241
[97][TOP]
>UniRef100_B9NL86 Pseudouridine synthase n=1 Tax=Rhodobacteraceae bacterium KLH11
RepID=B9NL86_9RHOB
Length = 347
Score = 54.7 bits (130), Expect = 3e-06
Identities = 35/98 (35%), Positives = 52/98 (53%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG R +D ++ + L++ Y E PRLVHRLD+D SG+L+M RT+ +A L + FR + +
Sbjct: 113 GGSGQTRHVDSLSEA-LRFGYDENPRLVHRLDKDTSGVLLMARTRDAAKALTAAFRHRNT 171
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 315
++ Y ALV G P G + L K
Sbjct: 172 -------------RKIYWALVAGVPTPYLGEIKTGLVK 196
[98][TOP]
>UniRef100_A3S822 Pseudouridine synthase n=2 Tax=Sulfitobacter RepID=A3S822_9RHOB
Length = 349
Score = 54.7 bits (130), Expect = 3e-06
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Frame = +1
Query: 61 ASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVL 240
A L +E E PRLVHRLD+D SG+L+M RT++ A L + FR +R
Sbjct: 126 ADALMFELDEKPRLVHRLDKDTSGVLIMARTRSIAAALTASFR-------------HRET 172
Query: 241 QRKYRALVIGCPRRPRGLVTASLGKVVVD--NGKSDRITIV---DNSSLLSSQHAITEYR 405
++ Y A V G P G + L K G+ +++ V D + ++ A T+Y
Sbjct: 173 RKIYWAAVAGVPHPRNGTIKFGLVKAFGHGARGEGEKMYCVHPKDMETTEGAKRATTDYA 232
Query: 406 VIGSS 420
+ +
Sbjct: 233 TLAQA 237
[99][TOP]
>UniRef100_Q1RJX7 Ribosomal large subunit pseudouridine synthase C n=2 Tax=Rickettsia
bellii RepID=RLUC_RICBR
Length = 301
Score = 54.3 bits (129), Expect = 4e-06
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPP--RLVHRLDRDCSGILVMGRTQTSATVLHSIF 186
A+ GG I S+D S LKY S+ +LVHRLD++ SG+L++ + S+ LH F
Sbjct: 108 ATQGGSKINLSVD----SALKYLNSQGADFKLVHRLDKETSGLLLIAKNYVSSVKLHDAF 163
Query: 187 REKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRIT-IVDN 363
+EK ++++ Y A+ G P + +G V ++ K G +IT I DN
Sbjct: 164 KEK-------------LVEKTYLAVTYGKPIKDQGEVKTNIEK---SKGSIPKITDINDN 207
Query: 364 SSLLSSQHAITEYRVIGS 417
+ L AIT Y+++ S
Sbjct: 208 NGKL----AITYYKLLKS 221
[100][TOP]
>UniRef100_Q2CBL6 Pseudouridine synthase n=1 Tax=Oceanicola granulosus HTCC2516
RepID=Q2CBL6_9RHOB
Length = 348
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Frame = +1
Query: 16 SSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREK 195
+ GG R +D ++A+ L + E PRLVHRLD+D SGIL++ RT+ +A L FR
Sbjct: 111 TQGGSRQTRHVDGLSAA-LTFGLEEKPRLVHRLDKDTSGILLLARTRAAAKGLTDAFR-- 167
Query: 196 TSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVD--NGKSDRITIVDNSS 369
+R ++ Y A V G P G V L K G+++++ +
Sbjct: 168 -----------SRETRKIYWAAVAGVPHPRMGTVKYGLVKQPGHGARGENEKMRCIHPDE 216
Query: 370 LL---SSQHAITEYRVI 411
+L ++ A+T+Y VI
Sbjct: 217 VLRTPDAKRAVTDYAVI 233
[101][TOP]
>UniRef100_Q1YJU8 Pseudouridine synthase n=1 Tax=Aurantimonas manganoxydans SI85-9A1
RepID=Q1YJU8_MOBAS
Length = 344
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/109 (33%), Positives = 56/109 (51%)
Frame = +1
Query: 94 PRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGC 273
P +VHRLD+D SG+LV+ ++ + L F G + R L R Y ALV G
Sbjct: 145 PGIVHRLDKDTSGLLVVAKSDAAHQGLADQFAAH--------GRDGR-LSRAYLALVWGV 195
Query: 274 PRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIGSS 420
P RP G + A+LG+ D K + D + ++HA+T + ++ +S
Sbjct: 196 PLRPSGTIDAALGRSTTDRVKR-AVVAADRA---DARHAVTRFNLVKAS 240
[102][TOP]
>UniRef100_D0CUP1 Ribosomal large subunit pseudouridine synthase C n=1
Tax=Silicibacter lacuscaerulensis ITI-1157
RepID=D0CUP1_9RHOB
Length = 347
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/98 (36%), Positives = 52/98 (53%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG R +D +A + L++ Y E PRLVHRLD+D SG+L+M RT+ +A L + FR + +
Sbjct: 113 GGSGQARHVDGLAEA-LRFGYDENPRLVHRLDKDTSGVLLMARTREAAKGLTAAFRHRNT 171
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 315
++ Y ALV G P G + L K
Sbjct: 172 -------------RKIYWALVAGVPTPYLGEIKTGLVK 196
[103][TOP]
>UniRef100_C9KZ03 Ribosomal large subunit pseudouridine synthase D n=1
Tax=Bacteroides finegoldii DSM 17565 RepID=C9KZ03_9BACE
Length = 357
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Frame = +1
Query: 76 YEYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKY 252
Y+ ++P LVHR+D+D SG+LV+ +T + T L + F KT+ +RKY
Sbjct: 152 YDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGNQFFNKTT-------------KRKY 198
Query: 253 RALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
RALV G + G + ++ + DR+ + S +HA+T YRV+
Sbjct: 199 RALVWGIVEQDEGTIIGNIAR-----NPKDRMQMAVMSDPTVGKHAVTHYRVL 246
[104][TOP]
>UniRef100_C3REX3 Pseudouridine synthase n=1 Tax=Bacteroides sp. D4
RepID=C3REX3_9BACE
Length = 357
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Frame = +1
Query: 73 KYEYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
+Y+ ++P LVHR+D+D SG+LV+ +T + T L F KT+ +RK
Sbjct: 151 RYDPNDPQVGLVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT-------------KRK 197
Query: 250 YRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
Y ALV G G + ++G+ DR+ + S +HA+T YRV+
Sbjct: 198 YNALVWGIVENNEGTIEGNIGR-----NPKDRMQMAVLSDPAQGKHAVTHYRVL 246
[105][TOP]
>UniRef100_C3Q699 Pseudouridine synthase n=1 Tax=Bacteroides sp. 9_1_42FAA
RepID=C3Q699_9BACE
Length = 357
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Frame = +1
Query: 73 KYEYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
+Y+ ++P LVHR+D+D SG+LV+ +T + T L F KT+ +RK
Sbjct: 151 RYDPNDPQVGLVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT-------------KRK 197
Query: 250 YRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
Y ALV G G + ++G+ DR+ + S +HA+T YRV+
Sbjct: 198 YNALVWGIVENNEGTIEGNIGR-----NPKDRMQMAVLSDPAQGKHAVTHYRVL 246
[106][TOP]
>UniRef100_B6VVB1 Pseudouridine synthase n=1 Tax=Bacteroides dorei DSM 17855
RepID=B6VVB1_9BACE
Length = 358
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Frame = +1
Query: 73 KYEYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
+Y+ ++P LVHR+D+D SG+LV+ +T + T L F KT+ +RK
Sbjct: 152 RYDPNDPQVGLVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT-------------KRK 198
Query: 250 YRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
Y ALV G G + ++G+ DR+ + S +HA+T YRV+
Sbjct: 199 YNALVWGIVENNEGTIEGNIGR-----NPKDRMQMAVLSDPAQGKHAVTHYRVL 247
[107][TOP]
>UniRef100_B3JP19 Pseudouridine synthase n=1 Tax=Bacteroides coprocola DSM 17136
RepID=B3JP19_9BACE
Length = 355
Score = 54.3 bits (129), Expect = 4e-06
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Frame = +1
Query: 76 YEYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKY 252
Y+ ++P LVHR+D+D SG+LV+ +T + T L F KT+ +R+Y
Sbjct: 151 YDPNDPQVGLVHRIDKDTSGLLVVAKTPDAKTSLGMQFYNKTT-------------KREY 197
Query: 253 RALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
ALV G G +T ++G+ DR+ + S +HA+T Y+V+
Sbjct: 198 NALVWGIVEEDEGTITGNIGR-----NPKDRMQMAVMSDPTQGKHAVTHYQVL 245
[108][TOP]
>UniRef100_Q28US1 Pseudouridine synthase n=1 Tax=Jannaschia sp. CCS1
RepID=Q28US1_JANSC
Length = 354
Score = 53.9 bits (128), Expect = 5e-06
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Frame = +1
Query: 16 SSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREK 195
+ GG R +D +A + LK+ + PRLVHRLD+D SG+L+M RT+ A L FR +
Sbjct: 117 TQGGTGQSRHVDGLAEA-LKFGLEDKPRLVHRLDKDTSGVLLMARTRMGAKALTDAFRLR 175
Query: 196 TSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVV-----VDNGKSDRITIVD 360
++ ++ Y A V G P G + L K +N K + + +
Sbjct: 176 ST-------------RKIYWAAVAGSPLPRMGTIKLGLVKAPGHGRGGENEKMRAVPVDE 222
Query: 361 NSSLLSSQHAITEYRVIGS 417
+ + ++ A T+Y V+ +
Sbjct: 223 IAQVDGAKRAETDYAVMSN 241
[109][TOP]
>UniRef100_Q0ANT2 Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10
RepID=Q0ANT2_MARMM
Length = 330
Score = 53.9 bits (128), Expect = 5e-06
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG R LD + + E + PRLVHRLD+D SGIL++G+ + L F
Sbjct: 108 AVQGGSKTTRHLDGMLDAF--GEGLDRPRLVHRLDKDTSGILIVGKGPKATARLAKAF-- 163
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIV-DNSS 369
++ ++ Y A+ IG P+ G + + K S+R T+V
Sbjct: 164 -----------QSHKTRKTYWAIAIGVPKPKMGEIKGFMRKAAASGVDSERETMVAAGHG 212
Query: 370 LLSSQHAITEYRVIGSS 420
+QHA+T Y VIG +
Sbjct: 213 DEGAQHALTRYVVIGEA 229
[110][TOP]
>UniRef100_B7RL95 Pseudouridine synthase n=1 Tax=Roseobacter sp. GAI101
RepID=B7RL95_9RHOB
Length = 349
Score = 53.9 bits (128), Expect = 5e-06
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Frame = +1
Query: 61 ASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVL 240
A L ++ E PRLVHRLD+D SG+L+M RT++ A L S FR +R
Sbjct: 126 ADALMFDLDEKPRLVHRLDKDTSGVLIMARTRSIAADLTSSFR-------------HRQT 172
Query: 241 QRKYRALVIGCPRRPRGLVTASLGKVVVD--NGKSDRITIV---DNSSLLSSQHAITEYR 405
++ Y A V G P G + L K G+ +++ V D + ++ A T+Y
Sbjct: 173 RKIYWAAVAGVPHPKNGTIKFGLVKAFGHGARGEGEKMYCVHPKDMDTTEGAKRATTDYA 232
Query: 406 VIGSS 420
+ +
Sbjct: 233 TLAQA 237
[111][TOP]
>UniRef100_A4TV08 Pseudouridine synthase n=1 Tax=Magnetospirillum gryphiswaldense
RepID=A4TV08_9PROT
Length = 230
Score = 53.9 bits (128), Expect = 5e-06
Identities = 40/117 (34%), Positives = 58/117 (49%)
Frame = +1
Query: 70 LKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
L++ P L HRLDRD SG LV+GR + + L IF G+E Q+
Sbjct: 46 LRFGLPRNPELAHRLDRDTSGCLVLGRHRKALARLGEIF----------AGSE---AQKT 92
Query: 250 YRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIGSS 420
Y A+V+G P G++ L K+ +G R+ + D Q A+TEYRV+G +
Sbjct: 93 YWAVVVGKPPAESGIIDKRLKKLERRHGW--RMVVDD-----KGQDAVTEYRVLGGN 142
[112][TOP]
>UniRef100_A3V4J4 Pseudouridine synthase n=1 Tax=Loktanella vestfoldensis SKA53
RepID=A3V4J4_9RHOB
Length = 351
Score = 53.9 bits (128), Expect = 5e-06
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A+ GG + R +D +A + L + Y E PRLVHRLDRD SG+L++ RT+ A L
Sbjct: 113 ATQGGTNTTRHVDGMAEA-LMFGYDEKPRLVHRLDRDTSGVLLLARTRMMAKQLTE---- 167
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVV--VDNGKSDRITIVDNS 366
++R ++ Y A V G P G + L K G+++++ V +
Sbjct: 168 ---------NLKHRETRKIYWAAVAGVPHPRAGTIKYGLVKAPGHGKGGENEKMRCVHPN 218
Query: 367 SLLSSQ---HAITEYRVI 411
+ S++ A ++Y V+
Sbjct: 219 EIASTEGAKRATSDYAVM 236
[113][TOP]
>UniRef100_A8F120 Pseudouridine synthase n=1 Tax=Rickettsia massiliae MTU5
RepID=A8F120_RICM5
Length = 306
Score = 53.5 bits (127), Expect = 7e-06
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKY-EYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIF 186
A+ GG I S+D S LKY Y +LVHRLD++ SG+L++ + S+ LH F
Sbjct: 111 ATQGGSKINLSID----SALKYLNYKGADFKLVHRLDKETSGLLLIAKNYLSSVKLHDAF 166
Query: 187 REKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNS 366
+EK ++ + Y A+ G P + G V +++ K G + +IT +D+
Sbjct: 167 KEK-------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITNIDSE 210
Query: 367 SLLSSQHAITEYRVIGS 417
+S+ AIT Y+V+ S
Sbjct: 211 ---NSKLAITYYKVLKS 224
[114][TOP]
>UniRef100_B7QX41 Pseudouridine synthase n=1 Tax=Ruegeria sp. R11 RepID=B7QX41_9RHOB
Length = 348
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/109 (34%), Positives = 56/109 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + +D ++ + LK++ E PRLVHRLD+D SG+LV+ RT+ +A L + FR
Sbjct: 111 AVQGGSGTTKHVDGLSEA-LKFDAEEKPRLVHRLDKDTSGVLVLARTRQAAQALTAAFR- 168
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKS 339
+ ++ Y ALV G P G + L K +GKS
Sbjct: 169 ------------HHATRKIYWALVAGVPTPYLGEIKCGLVK-APGHGKS 204
[115][TOP]
>UniRef100_A5ZK22 Pseudouridine synthase n=1 Tax=Bacteroides caccae ATCC 43185
RepID=A5ZK22_9BACE
Length = 357
Score = 53.5 bits (127), Expect = 7e-06
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Frame = +1
Query: 76 YEYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKY 252
Y+ ++P LVHR+D+D SG+LV+ +T + T L F KT+ +RKY
Sbjct: 152 YDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGLQFFNKTT-------------KRKY 198
Query: 253 RALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
RALV G + G + ++ + DR+ + S +HA+T YRV+
Sbjct: 199 RALVWGTVEQDEGTIVGNIAR-----NPKDRMQMAVMSDPAVGKHAVTHYRVL 246
[116][TOP]
>UniRef100_A4EN86 Pseudouridine synthase n=1 Tax=Roseobacter sp. CCS2
RepID=A4EN86_9RHOB
Length = 351
Score = 53.5 bits (127), Expect = 7e-06
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A+ GG + R +D ++ + L ++Y E PRLVHRLD+D SG+L++ RT+ A L
Sbjct: 113 ATQGGTNTTRHVDGLSEA-LMFDYDEKPRLVHRLDKDTSGVLLLARTRMMAKQLTE---- 167
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVD--NGKSDRITIV--- 357
++R ++ Y A V G P G + L K G+++++ V
Sbjct: 168 ---------NLKHRETRKIYWAAVAGVPHPRAGTIKYGLVKAPGHGRGGENEKMRCVHPR 218
Query: 358 DNSSLLSSQHAITEYRVI 411
D S+ ++ A ++Y V+
Sbjct: 219 DLDSVEGAKRATSDYAVM 236
[117][TOP]
>UniRef100_A3SK10 Pseudouridine synthase n=1 Tax=Roseovarius nubinhibens ISM
RepID=A3SK10_9RHOB
Length = 346
Score = 53.5 bits (127), Expect = 7e-06
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG R +D +A + L+++ E PRLVHRLD+D SG+L++ RT+ A L + FR + +
Sbjct: 112 GGSKQTRHVDGLAEA-LRFDLDEKPRLVHRLDKDTSGVLILARTRQMAADLTAAFRHRNT 170
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVV--VDNGKSDRITI-----VD 360
++ Y A V G P G V L K G+ +++ VD
Sbjct: 171 -------------RKIYWAAVAGVPLPRMGTVKYGLVKAPGHGKGGEGEKMLCIHPREVD 217
Query: 361 NSSLLSSQHAITEYRVI 411
N+ ++HA ++Y V+
Sbjct: 218 NTP--GAKHATSDYAVL 232
[118][TOP]
>UniRef100_UPI0001968D37 hypothetical protein BACCELL_01259 n=1 Tax=Bacteroides
cellulosilyticus DSM 14838 RepID=UPI0001968D37
Length = 357
Score = 53.1 bits (126), Expect = 9e-06
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Frame = +1
Query: 76 YEYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKY 252
Y+ ++P LVHR+D+D SG+LV+ +T + T L F KT+ +R+Y
Sbjct: 153 YDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGMQFFNKTT-------------KRRY 199
Query: 253 RALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
RALV G + G +T ++G+ D ++T++ + +HA+T YRV+
Sbjct: 200 RALVWGTVEQDEGTITGNIGRNPRDR---MQMTVLPDD---QGKHAVTHYRVL 246
[119][TOP]
>UniRef100_Q98FK0 Pseudouridine synthase n=1 Tax=Mesorhizobium loti
RepID=Q98FK0_RHILO
Length = 329
Score = 53.1 bits (126), Expect = 9e-06
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Frame = +1
Query: 94 PRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGC 273
P +VHRLD++ SG++V+ +T + L F + + L+R Y ALV G
Sbjct: 130 PGIVHRLDKETSGVMVVAKTDRAHKALSEAFADHGRTGD---------LERAYLALVWGI 180
Query: 274 PRRPRGLVTASLG-------KVVVDNGKSDRITIVDNSSLLSSQHAITEYRV 408
P+RP G V A LG + VV G+ D ++HA+T + V
Sbjct: 181 PQRPTGTVDAPLGRAADRVRRAVVPEGRDD------------ARHAVTHFAV 220
[120][TOP]
>UniRef100_Q6ND99 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris
RepID=Q6ND99_RHOPA
Length = 324
Score = 53.1 bits (126), Expect = 9e-06
Identities = 40/133 (30%), Positives = 62/133 (46%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG +++ S D L+Y PP L HRLDRD SG LV+GR + + L +F+
Sbjct: 47 GGPNLEASFDA-----LRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHSR- 100
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSS 381
+ + Y A+V G P +G + + K+ + G + VD L S
Sbjct: 101 ------------ISKTYWAIVEGGPTEDQGSIDLPIAKLNAERGWWQK---VDPEGLPS- 144
Query: 382 QHAITEYRVIGSS 420
+T++RV+G S
Sbjct: 145 ---LTKWRVMGRS 154
[121][TOP]
>UniRef100_Q3J5P2 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides 2.4.1
RepID=Q3J5P2_RHOS4
Length = 346
Score = 53.1 bits (126), Expect = 9e-06
Identities = 31/82 (37%), Positives = 43/82 (52%)
Frame = +1
Query: 70 LKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
LK+ Y E P+LVHRLD+D SG+LV+ RT A L FR + + ++
Sbjct: 128 LKFGYKERPKLVHRLDKDTSGVLVLARTDRVARALSESFRHRNT-------------RKI 174
Query: 250 YRALVIGCPRRPRGLVTASLGK 315
Y ALV G P +G + +L K
Sbjct: 175 YWALVAGVPSPKQGSIKYALMK 196
[122][TOP]
>UniRef100_Q0BUM2 Pseudouridine synthase n=1 Tax=Granulibacter bethesdensis CGDNIH1
RepID=Q0BUM2_GRABC
Length = 366
Score = 53.1 bits (126), Expect = 9e-06
Identities = 41/132 (31%), Positives = 63/132 (47%)
Frame = +1
Query: 16 SSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREK 195
S GG I R LD + L++ + PRLVHRLDRD SG++V+ R+ A L ++FR
Sbjct: 143 SQGGPGITRHLDGLLDG-LRFGRDDRPRLVHRLDRDTSGVIVIARSPGVAAKLAALFR-- 199
Query: 196 TSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLL 375
R ++ Y A+V G P G + L + N +++ + + D
Sbjct: 200 -----------TRETEKVYWAVVAGRPVPVEGRIDRPL---LRQNDRNEPVVLADRKD-R 244
Query: 376 SSQHAITEYRVI 411
AIT+YR +
Sbjct: 245 DKVTAITDYRTL 256
[123][TOP]
>UniRef100_B9KLC1 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides KD131
RepID=B9KLC1_RHOSK
Length = 343
Score = 53.1 bits (126), Expect = 9e-06
Identities = 31/82 (37%), Positives = 43/82 (52%)
Frame = +1
Query: 70 LKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
LK+ Y E P+LVHRLD+D SG+LV+ RT A L FR + + ++
Sbjct: 125 LKFGYKERPKLVHRLDKDTSGVLVLARTDRVARALSESFRHRNT-------------RKI 171
Query: 250 YRALVIGCPRRPRGLVTASLGK 315
Y ALV G P +G + +L K
Sbjct: 172 YWALVAGVPSPKQGSIKYALMK 193
[124][TOP]
>UniRef100_B3Q780 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris TIE-1
RepID=B3Q780_RHOPT
Length = 322
Score = 53.1 bits (126), Expect = 9e-06
Identities = 40/133 (30%), Positives = 62/133 (46%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG +++ S D L+Y PP L HRLDRD SG LV+GR + + L +F+
Sbjct: 47 GGPNLEASFDA-----LRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHSR- 100
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSS 381
+ + Y A+V G P +G + + K+ + G + VD L S
Sbjct: 101 ------------ISKTYWAIVEGGPTEDQGSIDLPIAKLNAERGWWQK---VDPEGLPS- 144
Query: 382 QHAITEYRVIGSS 420
+T++RV+G S
Sbjct: 145 ---LTKWRVMGRS 154
[125][TOP]
>UniRef100_A5GBG9 Pseudouridine synthase n=1 Tax=Geobacter uraniireducens Rf4
RepID=A5GBG9_GEOUR
Length = 320
Score = 53.1 bits (126), Expect = 9e-06
Identities = 31/107 (28%), Positives = 54/107 (50%)
Frame = +1
Query: 94 PRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGC 273
P +VHR+D+D SG+LV+ ++ + L F+E T ++R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKSDAAHQSLAEQFKEHT-------------IKRVYLALVYGA 177
Query: 274 PRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIG 414
P+ +G + + +G+ VD + + +HA+T +RV+G
Sbjct: 178 PKDDKGRLESHIGRHPVDRKRM-------SGKAKHGKHAVTHWRVVG 217
[126][TOP]
>UniRef100_A4YKA7 Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. ORS278
RepID=A4YKA7_BRASO
Length = 300
Score = 53.1 bits (126), Expect = 9e-06
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG +++ S D L++ PP L HRLD++ SG LV+GR + + L +F+
Sbjct: 39 GGPNLEASFDA-----LRFGLPRPPVLAHRLDKETSGCLVLGRHRKATASLGLLFK---- 89
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG---KSDRITIVDNSSL 372
+ + + Y A+V G P G++ LGK+ + G K D
Sbjct: 90 ---------HGKISKTYWAVVEGGPEADEGVIELPLGKLNAERGWWQKPDP--------- 131
Query: 373 LSSQHAITEYRVIGSS 420
S Q A+T++RV+G S
Sbjct: 132 -SGQPAVTKWRVLGRS 146
[127][TOP]
>UniRef100_A4WVH9 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides ATCC 17025
RepID=A4WVH9_RHOS5
Length = 346
Score = 53.1 bits (126), Expect = 9e-06
Identities = 31/82 (37%), Positives = 43/82 (52%)
Frame = +1
Query: 70 LKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
LK+ Y E P+LVHRLD+D SG+LV+ RT A L FR + + ++
Sbjct: 128 LKFGYKERPKLVHRLDKDTSGVLVLARTDRVARALSESFRHRNT-------------RKI 174
Query: 250 YRALVIGCPRRPRGLVTASLGK 315
Y ALV G P +G + +L K
Sbjct: 175 YWALVAGVPSPKQGSIKYALMK 196
[128][TOP]
>UniRef100_A3PGP1 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides ATCC 17029
RepID=A3PGP1_RHOS1
Length = 346
Score = 53.1 bits (126), Expect = 9e-06
Identities = 31/82 (37%), Positives = 43/82 (52%)
Frame = +1
Query: 70 LKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
LK+ Y E P+LVHRLD+D SG+LV+ RT A L FR + + ++
Sbjct: 128 LKFGYKERPKLVHRLDKDTSGVLVLARTDRVARALSESFRHRNT-------------RKI 174
Query: 250 YRALVIGCPRRPRGLVTASLGK 315
Y ALV G P +G + +L K
Sbjct: 175 YWALVAGVPSPKQGSIKYALMK 196
[129][TOP]
>UniRef100_Q0FIH4 Pseudouridine synthase n=1 Tax=Roseovarius sp. HTCC2601
RepID=Q0FIH4_9RHOB
Length = 350
Score = 53.1 bits (126), Expect = 9e-06
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 9/143 (6%)
Frame = +1
Query: 22 GGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTS 201
GG +R +D +A + L+++Y E PRLVHRLD+D SG+L++ RT+ A L R K +
Sbjct: 116 GGSKQERHVDGLAEA-LRFDYDEKPRLVHRLDKDTSGVLLLARTREIAQALTGAIRHKQT 174
Query: 202 SASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVV--VDNGKSDRITIV-----D 360
++ Y A+V G P G + L K +G+ +++ V D
Sbjct: 175 -------------RKIYWAVVAGVPTPYLGEIRFGLVKAPGHGKSGEGEKMICVHPREMD 221
Query: 361 NSSLLSSQHAI--TEYRVIGSSS 423
+ H + T YRV G +S
Sbjct: 222 RTPGAKRAHTLYATLYRVAGRAS 244
[130][TOP]
>UniRef100_C8S4Y4 Pseudouridine synthase, RluA family n=1 Tax=Rhodobacter sp. SW2
RepID=C8S4Y4_9RHOB
Length = 349
Score = 53.1 bits (126), Expect = 9e-06
Identities = 30/82 (36%), Positives = 43/82 (52%)
Frame = +1
Query: 70 LKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
LK+ Y E P+LVHRLD+D SG+L++ RT A L FR + + ++
Sbjct: 129 LKFGYKERPKLVHRLDKDTSGVLILARTDRVARALSEAFRHRNT-------------RKI 175
Query: 250 YRALVIGCPRRPRGLVTASLGK 315
Y ALV G P +G + +L K
Sbjct: 176 YWALVAGVPHPRQGSIKYALMK 197
[131][TOP]
>UniRef100_C6IPX7 Pseudouridine synthase n=2 Tax=Bacteroides RepID=C6IPX7_9BACE
Length = 357
Score = 53.1 bits (126), Expect = 9e-06
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Frame = +1
Query: 73 KYEYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
+Y+ ++P LVHR+D+D SG+LV+ +T + T L F KT+ +R+
Sbjct: 151 EYDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTT-------------KRR 197
Query: 250 YRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
YRALV G + G + S+ + DR+ + S +HA+T YRV+
Sbjct: 198 YRALVWGNVEQDEGTIVGSIAR-----NPKDRMQMAVMSDPSMGKHAVTHYRVL 246
[132][TOP]
>UniRef100_A7M0A1 Pseudouridine synthase n=1 Tax=Bacteroides ovatus ATCC 8483
RepID=A7M0A1_BACOV
Length = 357
Score = 53.1 bits (126), Expect = 9e-06
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Frame = +1
Query: 76 YEYSEPP-RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKY 252
Y+ ++P LVHR+D+D SG+LV+ +T + T L F KT+ +RKY
Sbjct: 152 YDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTT-------------KRKY 198
Query: 253 RALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI 411
RALV G + G + ++ + DR+ + S +HA+T YRV+
Sbjct: 199 RALVWGVMEQDEGTIVGNIAR-----NPRDRMQMAVMSDPTVGKHAVTHYRVL 246
[133][TOP]
>UniRef100_A5PEL5 Pseudouridine synthase n=1 Tax=Erythrobacter sp. SD-21
RepID=A5PEL5_9SPHN
Length = 376
Score = 53.1 bits (126), Expect = 9e-06
Identities = 42/136 (30%), Positives = 64/136 (47%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A+ GG + +D + + ++ + PRLVHRLD+D SGIL++ RT SA F
Sbjct: 113 ATQGGTNTFNHVDGLLDAYMEEGEEQRPRLVHRLDKDTSGILLVARTPGSAAFFSKRF-- 170
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
R ++ Y ALV+G P +G++ A L K G+ VD+
Sbjct: 171 -----------SGRSAKKIYWALVVGVPDIRQGVIEAPLAKQPGSGGEKMH---VDHE-- 214
Query: 373 LSSQHAITEYRVIGSS 420
A T+YRV+ S+
Sbjct: 215 -GGAPAKTKYRVVESA 229
[134][TOP]
>UniRef100_A4TY94 Pseudouridine synthase n=1 Tax=Magnetospirillum gryphiswaldense
RepID=A4TY94_9PROT
Length = 226
Score = 53.1 bits (126), Expect = 9e-06
Identities = 38/115 (33%), Positives = 56/115 (48%)
Frame = +1
Query: 70 LKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRK 249
LK+ +S PRL HRLDRD SG L++GR S L +F + +++
Sbjct: 45 LKFGWSMAPRLAHRLDRDTSGCLLLGRHDKSIKRLGKMFMQGR-------------VEKA 91
Query: 250 YRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIG 414
Y +V G P G ++A + KV GK I+D + Q A+T +RV+G
Sbjct: 92 YWTVVHGTPPEDTGEISAPIHKV---TGKGGWRIIID----AAGQPAVTRWRVLG 139
[135][TOP]
>UniRef100_A4EPD5 Pseudouridine synthase n=1 Tax=Roseobacter sp. SK209-2-6
RepID=A4EPD5_9RHOB
Length = 348
Score = 53.1 bits (126), Expect = 9e-06
Identities = 36/101 (35%), Positives = 51/101 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG R +D ++ + L+ E E PRLVHRLD+D SG+LV+ R + +A L + FR
Sbjct: 111 AVQGGSGTTRHVDGLSEA-LRLEAEEKPRLVHRLDKDTSGVLVLARNRKAAQALTAAFRH 169
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 315
K + ++ Y ALV G P G + L K
Sbjct: 170 KNT-------------RKIYWALVAGVPTPYLGEIKTGLVK 197
[136][TOP]
>UniRef100_A3X427 Pseudouridine synthase n=1 Tax=Roseobacter sp. MED193
RepID=A3X427_9RHOB
Length = 348
Score = 53.1 bits (126), Expect = 9e-06
Identities = 35/101 (34%), Positives = 52/101 (51%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG + +D +A L+++ E PRLVHRLD+D SG+LV+ R + +A L + FR
Sbjct: 111 AVQGGSGTTKHVDGLA-DALRFDAEEKPRLVHRLDKDTSGVLVLARNRLAAKSLTAAFRH 169
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 315
+ + ++ Y ALV G P G + A L K
Sbjct: 170 RNT-------------RKIYWALVAGVPTPYLGEIKAGLVK 197
[137][TOP]
>UniRef100_A0NWE6 Pseudouridine synthase n=1 Tax=Labrenzia aggregata IAM 12614
RepID=A0NWE6_9RHOB
Length = 355
Score = 53.1 bits (126), Expect = 9e-06
Identities = 40/136 (29%), Positives = 69/136 (50%)
Frame = +1
Query: 13 ASSGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFRE 192
A GG +KR LD + + + ++P RLVHRLDR+ SGI+++ RT+ +A L FR
Sbjct: 131 AVQGGSGLKRHLDGMLDAYTDRKGNKP-RLVHRLDRETSGIILVARTRQAAQELTKAFRH 189
Query: 193 KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSL 372
+ + ++ Y A++ G P+ +G ++ L + N +R+ +V
Sbjct: 190 RNT-------------RKIYWAILAGVPKPFQGRISTFLAR----NDGEERMQVVRQGE- 231
Query: 373 LSSQHAITEYRVIGSS 420
+QHA++ Y V S
Sbjct: 232 DEAQHAVSLYSVFEKS 247