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[1][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 168 bits (425), Expect = 2e-40
Identities = 81/95 (85%), Positives = 91/95 (95%)
Frame = -1
Query: 366 PSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGE 187
PSEVIADP+AETAEE LIKQFM++DLEKVL+SLNPRE QVIRWR+G++DGR KTLQEIGE
Sbjct: 484 PSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGE 543
Query: 186 MLGVSRERIRQIESCAFRKLKNKKRNKHLQQYLVS 82
++GVSRERIRQIESCAFRKLKNK+R KHLQQYLVS
Sbjct: 544 LMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578
[2][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 168 bits (425), Expect = 2e-40
Identities = 81/95 (85%), Positives = 91/95 (95%)
Frame = -1
Query: 366 PSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGE 187
PSEVIADP+AETAEE LIKQFM++DLEKVL+SLNPRE QVIRWR+G++DGR KTLQEIGE
Sbjct: 141 PSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGE 200
Query: 186 MLGVSRERIRQIESCAFRKLKNKKRNKHLQQYLVS 82
++GVSRERIRQIESCAFRKLKNK+R KHLQQYLVS
Sbjct: 201 LMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 235
[3][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 161 bits (407), Expect = 2e-38
Identities = 79/97 (81%), Positives = 89/97 (91%)
Frame = -1
Query: 366 PSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGE 187
PSEVIADPEA T+E+ LIK+FM++DL+KVLDSL RE QVIRWRFGM+DGRMKTLQEIGE
Sbjct: 478 PSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGE 537
Query: 186 MLGVSRERIRQIESCAFRKLKNKKRNKHLQQYLVSXS 76
M+GVSRER+RQIES AFRKLKNKKRN HLQQYLV+ S
Sbjct: 538 MMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVAQS 574
[4][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 161 bits (407), Expect = 2e-38
Identities = 79/97 (81%), Positives = 89/97 (91%)
Frame = -1
Query: 366 PSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGE 187
PSEVIADPEA T+E+ LIK+FM++DL+KVLDSL RE QVIRWRFGM+DGRMKTLQEIGE
Sbjct: 476 PSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGE 535
Query: 186 MLGVSRERIRQIESCAFRKLKNKKRNKHLQQYLVSXS 76
M+GVSRER+RQIES AFRKLKNKKRN HLQQYLV+ S
Sbjct: 536 MMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVAQS 572
[5][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 161 bits (407), Expect = 2e-38
Identities = 78/95 (82%), Positives = 90/95 (94%)
Frame = -1
Query: 366 PSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGE 187
PSEVIADPEAETAEE L+KQFMK+DLEKVL++LNPRE QV+RWRFG++DGRMKTLQEIGE
Sbjct: 475 PSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGE 534
Query: 186 MLGVSRERIRQIESCAFRKLKNKKRNKHLQQYLVS 82
++GVSRERIRQIES AFRKLKNKKR K L+QYL++
Sbjct: 535 IMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569
[6][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 160 bits (405), Expect = 4e-38
Identities = 79/97 (81%), Positives = 88/97 (90%)
Frame = -1
Query: 366 PSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGE 187
PSEVIADPEA T E+ LIK+FM++DL+KVLDSL RE QVIRWRFGM+DGRMKTLQEIGE
Sbjct: 476 PSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGE 535
Query: 186 MLGVSRERIRQIESCAFRKLKNKKRNKHLQQYLVSXS 76
M+GVSRER+RQIES AFRKLKNKKRN HLQQYLV+ S
Sbjct: 536 MMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVAQS 572
[7][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 158 bits (400), Expect = 2e-37
Identities = 76/95 (80%), Positives = 89/95 (93%)
Frame = -1
Query: 366 PSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGE 187
PSEVIADPEAET+E+ L+KQFM++DL+KVLDSL+ RE QVIRWRFGM+DGRMKTLQEIGE
Sbjct: 476 PSEVIADPEAETSEDILMKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGE 535
Query: 186 MLGVSRERIRQIESCAFRKLKNKKRNKHLQQYLVS 82
+GVSRER+RQI++ AFRKLKNKKRN HLQQYLV+
Sbjct: 536 TMGVSRERVRQIDTSAFRKLKNKKRNSHLQQYLVA 570
[8][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 156 bits (395), Expect = 6e-37
Identities = 77/94 (81%), Positives = 87/94 (92%)
Frame = -1
Query: 363 SEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEM 184
SEV ADPEAETAE+ L+K+FMKKDLE+VL+SL+PRENQVIRWRFGM+DGRMKTLQEIGE+
Sbjct: 471 SEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGEL 530
Query: 183 LGVSRERIRQIESCAFRKLKNKKRNKHLQQYLVS 82
+GVSRERIRQIE AFRKLKNK R K L+QYLVS
Sbjct: 531 MGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 564
[9][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 151 bits (382), Expect = 2e-35
Identities = 73/94 (77%), Positives = 85/94 (90%)
Frame = -1
Query: 363 SEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEM 184
SEV ADPEAETAE+ L+K+FMKKDL KVL SL+PRENQV+RWRFGM+DGRMKTLQEIGE+
Sbjct: 474 SEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGEL 533
Query: 183 LGVSRERIRQIESCAFRKLKNKKRNKHLQQYLVS 82
+GVSRER+RQIE AFRKLKNK R K L+QY+V+
Sbjct: 534 MGVSRERVRQIELSAFRKLKNKNRTKQLRQYMVA 567
[10][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 150 bits (379), Expect = 4e-35
Identities = 73/93 (78%), Positives = 86/93 (92%)
Frame = -1
Query: 366 PSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGE 187
PSEVIADPEAETAE+ L KQFM++DLEKVLD+L+ RE QVIRWRFG++DGRMKTLQEIGE
Sbjct: 481 PSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGE 540
Query: 186 MLGVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
++GVSRERIRQIES AFRKL+NKK+ +LQQY+
Sbjct: 541 LMGVSRERIRQIESSAFRKLQNKKKTINLQQYM 573
[11][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 117 bits (293), Expect = 4e-25
Identities = 59/93 (63%), Positives = 73/93 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
EV ADP AETAEE L + MK+D+ K LD+L RE QV+ RFG++DGR++TLQEIG +
Sbjct: 468 EVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTM 527
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYLVS 82
GVSRERIRQIES AFRKL++KKR L+ YLV+
Sbjct: 528 GVSRERIRQIESAAFRKLRSKKRVNALKDYLVT 560
[12][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
bicolor RepID=C6JRK5_SORBI
Length = 238
Score = 117 bits (293), Expect = 4e-25
Identities = 60/92 (65%), Positives = 73/92 (79%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
EV ADP AETAEE L + MKKD+ K LD+L RE QV+ RFG++D R++TLQEIG ++
Sbjct: 142 EVTADPSAETAEEMLNRMSMKKDVHKALDTLTTREKQVVVLRFGLEDDRIRTLQEIGNIM 201
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYLV 85
GVSRERIRQIES AFRKL++KKR K L+ YLV
Sbjct: 202 GVSRERIRQIESGAFRKLRSKKRVKALKDYLV 233
[13][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 117 bits (292), Expect = 5e-25
Identities = 59/92 (64%), Positives = 72/92 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
EV ADP AETAEE L + MK+D+ K LD+L RE QV+ RFG++DGR++TLQEIG +
Sbjct: 468 EVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTM 527
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYLV 85
GVSRERIRQIES AFRKL++KKR L+ YLV
Sbjct: 528 GVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
[14][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 117 bits (292), Expect = 5e-25
Identities = 59/92 (64%), Positives = 72/92 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
EV ADP AETAEE L + MK+D+ K LD+L RE QV+ RFG++DGR++TLQEIG +
Sbjct: 468 EVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTM 527
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYLV 85
GVSRERIRQIES AFRKL++KKR L+ YLV
Sbjct: 528 GVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
[15][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 117 bits (292), Expect = 5e-25
Identities = 59/92 (64%), Positives = 72/92 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
EV ADP AETAEE L + MK+D+ K LD+L RE QV+ RFG++DGR++TLQEIG +
Sbjct: 467 EVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTM 526
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYLV 85
GVSRERIRQIES AFRKL++KKR L+ YLV
Sbjct: 527 GVSRERIRQIESAAFRKLRSKKRVNALKDYLV 558
[16][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 116 bits (291), Expect = 7e-25
Identities = 59/92 (64%), Positives = 73/92 (79%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
EV ADP AETAEE L + MKKD+ LD+L RE QV+ RFG++DGR++TLQEIG ++
Sbjct: 443 EVTADPSAETAEEMLNRMSMKKDVHMALDTLTTREKQVVVLRFGLEDGRIRTLQEIGNIM 502
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYLV 85
GVSRERIRQIES AFRKL++KK+ K L+ YLV
Sbjct: 503 GVSRERIRQIESGAFRKLRSKKKVKALKDYLV 534
[17][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 114 bits (285), Expect = 3e-24
Identities = 54/91 (59%), Positives = 71/91 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
E+ D ETAEE L + MK+D+++ LD L+PRE QVIR+RFGMDDGR++TL +IG ++
Sbjct: 444 EITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLM 503
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GVSRERIRQIE AFRKL+ +K+ + LQ YL
Sbjct: 504 GVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
[18][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 114 bits (285), Expect = 3e-24
Identities = 54/91 (59%), Positives = 71/91 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
E+ D ETAEE L + MK+D+++ LD L+PRE QVIR+RFGMDDGR++TL +IG ++
Sbjct: 247 EITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLM 306
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GVSRERIRQIE AFRKL+ +K+ + LQ YL
Sbjct: 307 GVSRERIRQIELVAFRKLRGRKKVQSLQHYL 337
[19][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 114 bits (285), Expect = 3e-24
Identities = 54/91 (59%), Positives = 71/91 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
E+ D ETAEE L + MK+D+++ LD L+PRE QVIR+RFGMDDGR++TL +IG ++
Sbjct: 401 EITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLM 460
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GVSRERIRQIE AFRKL+ +K+ + LQ YL
Sbjct: 461 GVSRERIRQIELVAFRKLRGRKKVQSLQHYL 491
[20][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 114 bits (285), Expect = 3e-24
Identities = 54/91 (59%), Positives = 71/91 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
E+ D ETAEE L + MK+D+++ LD L+PRE QVIR+RFGMDDGR++TL +IG ++
Sbjct: 444 EITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLM 503
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GVSRERIRQIE AFRKL+ +K+ + LQ YL
Sbjct: 504 GVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
[21][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 108 bits (270), Expect = 2e-22
Identities = 53/91 (58%), Positives = 71/91 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
E++ D AETAEE L + MKKD+ LDSL+PR+ QV+R+RFG++ GR +TL +IG+++
Sbjct: 431 EIMPDTSAETAEETLHRWLMKKDVNTALDSLSPRKKQVMRYRFGIEGGRARTLHDIGQLM 490
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GVSRERIRQIE AFRKL++K R + LQ YL
Sbjct: 491 GVSRERIRQIELGAFRKLRSKNRLQSLQHYL 521
[22][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 107 bits (266), Expect = 5e-22
Identities = 49/91 (53%), Positives = 72/91 (79%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
E++AD + ++ E+ ++KQ M++D+E VL +LNPRE +V+R RFG+DDGR KTL+EIG++
Sbjct: 482 ELVADTDVDSPEDAIVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIF 541
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL+ RN L++YL
Sbjct: 542 KVTRERIRQIEAKAMRKLRQPSRNSILREYL 572
[23][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 106 bits (265), Expect = 7e-22
Identities = 49/87 (56%), Positives = 70/87 (80%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+Q+ K +++DLEKVLDSL+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 302 ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 361
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 362 ERIRQIEAKALRKLRHPNRNSVLKEYI 388
[24][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 106 bits (265), Expect = 7e-22
Identities = 49/87 (56%), Positives = 70/87 (80%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+Q+ K +++DLEKVLDSL+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 304 ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 363
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 364 ERIRQIEAKALRKLRHPNRNSVLKEYI 390
[25][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 106 bits (265), Expect = 7e-22
Identities = 53/91 (58%), Positives = 71/91 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
E++ D AETAEE L + MKKD+ L+SL+PRE V+R+RFG++ GR +TL +IG+++
Sbjct: 432 EIMPDTSAETAEEVLHRWLMKKDVNTALESLSPREKLVMRYRFGIEGGRPRTLHDIGQIM 491
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GVSRERIRQIE AFRKL++KKR + LQ YL
Sbjct: 492 GVSRERIRQIELGAFRKLRSKKRVQSLQHYL 522
[26][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 106 bits (265), Expect = 7e-22
Identities = 49/87 (56%), Positives = 70/87 (80%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+Q+ K +++DLEKVLDSL+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 303 ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 362
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 363 ERIRQIEAKALRKLRHPNRNSVLKEYI 389
[27][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 105 bits (263), Expect = 1e-21
Identities = 49/92 (53%), Positives = 68/92 (73%)
Frame = -1
Query: 363 SEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEM 184
SE++AD +E+ E + K+ KKDL++VLD+L RE QV+R R+G+DDGRMK+L E+GE
Sbjct: 402 SEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGEN 461
Query: 183 LGVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
+SRER+RQIE A RKL+ R +HL+ YL
Sbjct: 462 FSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 493
[28][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 105 bits (263), Expect = 1e-21
Identities = 49/92 (53%), Positives = 68/92 (73%)
Frame = -1
Query: 363 SEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEM 184
SE++AD +E+ E + K+ KKDL++VLD+L RE QV+R R+G+DDGRMK+L E+GE
Sbjct: 499 SEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGEN 558
Query: 183 LGVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
+SRER+RQIE A RKL+ R +HL+ YL
Sbjct: 559 FSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 590
[29][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 103 bits (257), Expect = 6e-21
Identities = 47/87 (54%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+Q+ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 300 ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 359
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 360 ERIRQIEAKALRKLRHPNRNSILKEYI 386
[30][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 103 bits (257), Expect = 6e-21
Identities = 47/87 (54%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+Q+ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 293 EADGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 352
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 353 ERIRQIEAKALRKLRHPNRNSILKEYI 379
[31][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 103 bits (257), Expect = 6e-21
Identities = 47/87 (54%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+Q+ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 304 ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 363
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 364 ERIRQIEAKALRKLRHPNRNSILKEYI 390
[32][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 102 bits (254), Expect = 1e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 289 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 348
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 349 ERIRQIEAKALRKLRHPNRNSILKEYI 375
[33][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 102 bits (254), Expect = 1e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 388
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 389 ERIRQIEAKALRKLRHPNRNSILKEYI 415
[34][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 102 bits (254), Expect = 1e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 388
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 389 ERIRQIEAKALRKLRHPNRNSILKEYI 415
[35][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 102 bits (254), Expect = 1e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 327 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 386
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 387 ERIRQIEAKALRKLRHPNRNSILKEYI 413
[36][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 102 bits (254), Expect = 1e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 290 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 349
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 350 ERIRQIEAKALRKLRHPNRNSILKEYI 376
[37][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 102 bits (254), Expect = 1e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 388
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 389 ERIRQIEAKALRKLRHPNRNSILKEYI 415
[38][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 102 bits (254), Expect = 1e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 388
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 389 ERIRQIEAKALRKLRHPNRNSILKEYI 415
[39][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 102 bits (254), Expect = 1e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 388
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 389 ERIRQIEAKALRKLRHPNRNSILKEYI 415
[40][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 102 bits (254), Expect = 1e-20
Identities = 49/91 (53%), Positives = 71/91 (78%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
E+IAD + E+ E+ LI+Q +K+D++ VL +LNPRE +V+R RFG+DDG+ +TL+EIG +
Sbjct: 496 EMIADKDVESPEDDLIRQVLKQDVDGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLF 555
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL+ RN L++YL
Sbjct: 556 KVTRERIRQIEAKAMRKLRQPSRNGVLREYL 586
[41][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 102 bits (254), Expect = 1e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 338 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 397
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 398 ERIRQIEAKALRKLRHPNRNSILKEYI 424
[42][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 102 bits (254), Expect = 1e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 388
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 389 ERIRQIEAKALRKLRHPNRNSILKEYI 415
[43][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 102 bits (253), Expect = 2e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+Q+ K +++DLE VLD+L+PRE V++ R+G+DDGRMKTL+EIG++ V+R
Sbjct: 284 ESDGETPEDQVSKSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTR 343
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 344 ERIRQIEAKALRKLRHPNRNSVLKEYI 370
[44][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 101 bits (252), Expect = 2e-20
Identities = 46/87 (52%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VL+SL+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 299 ESDGETPEDEVSKNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 358
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 359 ERIRQIEAKALRKLRHPNRNSILKEYI 385
[45][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 101 bits (251), Expect = 3e-20
Identities = 50/92 (54%), Positives = 67/92 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ + D AE E+ K +K+DLE VL++LNPRE V+R R+G+DDGR+KTL+EIG +
Sbjct: 424 DTLIDANAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVF 483
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYLV 85
V+RERIRQIE+ A RKLK RN+ LQ+Y V
Sbjct: 484 SVTRERIRQIEAKALRKLKQPSRNQVLQEYFV 515
[46][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 100 bits (250), Expect = 4e-20
Identities = 46/87 (52%), Positives = 68/87 (78%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ E ET EE++ K +++DLE VL++L PRE V++ R+G+DDGRMKTL+EIG++ V+R
Sbjct: 317 ESEGETPEERVAKVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTR 376
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 377 ERIRQIEAKALRKLRHPNRNSVLKEYI 403
[47][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 100 bits (249), Expect = 5e-20
Identities = 45/87 (51%), Positives = 69/87 (79%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VL++L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 313 EADGETPEDKVAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTR 372
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 373 ERIRQIEAKALRKLRHPNRNSVLKEYI 399
[48][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 100 bits (249), Expect = 5e-20
Identities = 46/87 (52%), Positives = 68/87 (78%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+Q+ K +++DLE VLD+L+ RE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 288 EADGETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 347
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 348 ERIRQIEAKALRKLRHPNRNSILKEYI 374
[49][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 100 bits (249), Expect = 5e-20
Identities = 45/87 (51%), Positives = 68/87 (78%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+++ K +++DLE VLD+L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 292 EADGENPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 351
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 352 ERIRQIEAKALRKLRHPNRNSILKEYI 378
[50][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 100 bits (248), Expect = 7e-20
Identities = 45/87 (51%), Positives = 68/87 (78%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 312 EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTR 371
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 372 ERIRQIEAKALRKLRHPNRNSILKEYI 398
[51][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 100 bits (248), Expect = 7e-20
Identities = 45/87 (51%), Positives = 68/87 (78%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 317 ESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTR 376
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 377 ERIRQIEAKALRKLRHPNRNSVLKEYI 403
[52][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 100 bits (248), Expect = 7e-20
Identities = 45/87 (51%), Positives = 68/87 (78%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 312 EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTR 371
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 372 ERIRQIEAKALRKLRHPNRNSILKEYI 398
[53][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 99.0 bits (245), Expect = 1e-19
Identities = 45/87 (51%), Positives = 68/87 (78%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+Q+ K +++DLE VL +L+PRE V++ R+G+DDGRMKTL+EIG++ V+R
Sbjct: 331 ESDGETPEDQVSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTR 390
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 391 ERIRQIEAKALRKLRHPNRNSVLKEYI 417
[54][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 99.0 bits (245), Expect = 1e-19
Identities = 45/87 (51%), Positives = 68/87 (78%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+Q+ K +++DLE VL +L+PRE V++ R+G+DDGRMKTL+EIG++ V+R
Sbjct: 291 ESDGETPEDQVSKNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTR 350
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 351 ERIRQIEAKALRKLRHPNRNSVLKEYI 377
[55][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 99.0 bits (245), Expect = 1e-19
Identities = 49/90 (54%), Positives = 65/90 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ + D AE E+ K +K+DLE VL++LNPRE V+R R+G+DDGR+KTL+EIG +
Sbjct: 238 DTLVDVTAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVF 297
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQY 91
V+RERIRQIE+ A RKLK RN LQ+Y
Sbjct: 298 SVTRERIRQIEAKALRKLKQPSRNSILQEY 327
[56][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 97.8 bits (242), Expect = 3e-19
Identities = 48/91 (52%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
E + D AE ++ K +K+DLE VL++L+PRE V+R R+GMDDGR+KTL+EIG +
Sbjct: 479 ETLVDDHAEHPDDATGKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVF 538
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL+ RN L++YL
Sbjct: 539 SVTRERIRQIEAKALRKLRQPSRNGILREYL 569
[57][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 95.5 bits (236), Expect = 2e-18
Identities = 45/91 (49%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 246 DFIEDSEAQSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 305
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 306 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 336
[58][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 95.5 bits (236), Expect = 2e-18
Identities = 46/91 (50%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ LE+VL+SL PRE +V+R RFG+DDGR +TL+E+G++
Sbjct: 297 DFIEDQDAPAPAEAASFTLLKEQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVF 356
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 357 GVTRERIRQIEAKALRKLRHPSRSKKLKDYL 387
[59][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 95.5 bits (236), Expect = 2e-18
Identities = 43/87 (49%), Positives = 67/87 (77%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + ET E+++ K +++DLE VL++L RE V++ R+G+DDGRMKTL+EIG++ V+R
Sbjct: 316 ESDGETPEDRVAKVLLREDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTR 375
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 376 ERIRQIEAKALRKLRHPNRNSVLKEYI 402
[60][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 95.5 bits (236), Expect = 2e-18
Identities = 44/91 (48%), Positives = 67/91 (73%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E+ EE + K ++ DLE V++SL+PRE V+R R+G+DDGR+KTL+EIG++ V+R
Sbjct: 338 EADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTR 397
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYLVSXS 76
ER+RQIE+ A RKL+ R+ L+ Y+ S S
Sbjct: 398 ERVRQIEAKAIRKLRQPYRSSILRDYVASNS 428
[61][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 95.5 bits (236), Expect = 2e-18
Identities = 47/91 (51%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ + D E E + K +K+DLE VL++LNPRE V+R R+G+DDGR+KTL+EIG +
Sbjct: 494 DTLIDDYTEHPEGETGKVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVF 553
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL+ RN L++YL
Sbjct: 554 SVTRERIRQIEAKALRKLRQPSRNGILREYL 584
[62][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 95.1 bits (235), Expect = 2e-18
Identities = 45/91 (49%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + EE + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 278 DFIEDQDATSPEEHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 337
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 338 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
[63][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 374 ESDTENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTR 433
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 434 ERIRQIEAKALRKLRHPNRNGVLKEYI 460
[64][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 384 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 443
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 444 ERIRQIEAKALRKLRHPNRNGVLKEYI 470
[65][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 364 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 423
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 424 ERIRQIEAKALRKLRHPNRNGVLKEYI 450
[66][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 348 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 407
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 408 ERIRQIEAKALRKLRHPNRNGVLKEYI 434
[67][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 353 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 412
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 413 ERIRQIEAKALRKLRHPNRNGVLKEYI 439
[68][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 363 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 422
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 423 ERIRQIEAKALRKLRHPNRNGVLKEYI 449
[69][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 357 ESDTENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTR 416
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 417 ERIRQIEAKALRKLRHPNRNGVLKEYI 443
[70][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 364 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 423
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 424 ERIRQIEAKALRKLRHPNRNGVLKEYI 450
[71][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 392 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 451
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 452 ERIRQIEAKALRKLRHPNRNGVLKEYI 478
[72][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 371 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 430
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 431 ERIRQIEAKALRKLRHPNRNGVLKEYI 457
[73][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + MKK LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 289 DFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 348
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 349 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[74][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + MKK LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 289 DFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 348
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 349 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[75][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + MKK LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 289 DFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 348
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 349 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[76][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
RepID=A5VJI3_LACRD
Length = 380
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + MKK LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 289 DFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 348
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 349 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[77][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 416 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 475
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 476 ERIRQIEAKALRKLRHPNRNGVLKEYI 502
[78][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XRX4_LACRE
Length = 380
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + MKK LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 289 DFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 348
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 349 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[79][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 360 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 419
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 420 ERIRQIEAKALRKLRHPNRNGVLKEYI 446
[80][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 369 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 428
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 429 ERIRQIEAKALRKLRHPNRNGVLKEYI 455
[81][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 382 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 441
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 442 ERIRQIEAKALRKLRHPNRNGVLKEYI 468
[82][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 94.7 bits (234), Expect = 3e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 373 EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 432
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 433 ERIRQIEAKALRKLRHPNRNGVLKEYI 459
[83][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 94.4 bits (233), Expect = 4e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 331 EADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 390
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 391 ERIRQIEAKALRKLRHPNRNGVLKEYI 417
[84][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 94.4 bits (233), Expect = 4e-18
Identities = 45/91 (49%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A+ E +++ LE+VL+SL PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 270 DFIEDEDAQAPAEAASFMLLREQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEF 329
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 330 GVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360
[85][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 94.4 bits (233), Expect = 4e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 283 DFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 342
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 343 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
[86][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 94.4 bits (233), Expect = 4e-18
Identities = 44/91 (48%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDSEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[87][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 94.4 bits (233), Expect = 4e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 331 EADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 390
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 391 ERIRQIEAKALRKLRHPNRNGVLKEYI 417
[88][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 94.4 bits (233), Expect = 4e-18
Identities = 44/91 (48%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 49 DFIEDSEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 108
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 109 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 139
[89][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 94.4 bits (233), Expect = 4e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + MKK LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 290 DFIEDHDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 349
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 350 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 380
[90][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 94.4 bits (233), Expect = 4e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 286 DFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 345
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 346 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[91][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 94.4 bits (233), Expect = 4e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[92][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/91 (49%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A+ + + +K LE+VLDSL PRE +V+R RFG+DDG+ +TL+E+G+
Sbjct: 269 DFIEDQDAKPPADAAAFELLKGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHF 328
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 329 GVTRERIRQIEAKALRKLRHPMRSKRLKDYL 359
[93][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 278 DFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 337
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 338 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
[94][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 94.0 bits (232), Expect = 5e-18
Identities = 44/91 (48%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 325 DFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 384
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 385 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[95][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 94.0 bits (232), Expect = 5e-18
Identities = 44/91 (48%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 261 DFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 320
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 321 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 351
[96][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 94.0 bits (232), Expect = 5e-18
Identities = 44/91 (48%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 325 DFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 384
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 385 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[97][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 278 DFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 337
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 338 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
[98][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 94.0 bits (232), Expect = 5e-18
Identities = 44/91 (48%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 331 DFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 390
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 391 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 421
[99][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
RepID=B2GBZ9_LACF3
Length = 380
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/91 (49%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + MKK LE VLD+L RE V+R RFG+DDGR +TL+E+G +
Sbjct: 289 DFIEDHDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVF 348
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 349 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[100][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 94.0 bits (232), Expect = 5e-18
Identities = 44/91 (48%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 325 DFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 384
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 385 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[101][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 93.6 bits (231), Expect = 6e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 309 EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTR 368
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 369 ERIRQIEAKALRKLRHPNRNGVLKEYI 395
[102][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[103][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[104][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 93.6 bits (231), Expect = 6e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 306 EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTR 365
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 366 ERIRQIEAKALRKLRHPNRNGVLKEYI 392
[105][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 93.6 bits (231), Expect = 6e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 306 EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTR 365
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 366 ERIRQIEAKALRKLRHPNRNGVLKEYI 392
[106][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 93.6 bits (231), Expect = 6e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 307 EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTR 366
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 367 ERIRQIEAKALRKLRHPNRNGVLKEYI 393
[107][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 93.6 bits (231), Expect = 6e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 310 EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTR 369
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 370 ERIRQIEAKALRKLRHPNRNGVLKEYI 396
[108][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 93.6 bits (231), Expect = 6e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 307 EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTR 366
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 367 ERIRQIEAKALRKLRHPNRNGVLKEYI 393
[109][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[110][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[111][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[112][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 251 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 310
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 311 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 341
[113][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[114][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[115][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[116][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 276 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 335
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 336 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 366
[117][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[118][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 93.6 bits (231), Expect = 6e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E E+ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 306 EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTR 365
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 366 ERIRQIEAKALRKLRHPNRNGVLKEYI 392
[119][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[120][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE V+D+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDSEAQSPSDHAAYELLKEQLEDVIDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[121][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 93.6 bits (231), Expect = 6e-18
Identities = 42/89 (47%), Positives = 67/89 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E+ EE + K ++ DLE V++SL+PRE V+R R+G+DDGR+KTL+EIG++ V+R
Sbjct: 355 EADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTR 414
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYLVS 82
ER+RQIE+ A RKL+ R+ L+ Y+++
Sbjct: 415 ERVRQIEAKAIRKLRQPYRSSILRDYVLA 443
[122][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 93.6 bits (231), Expect = 6e-18
Identities = 42/89 (47%), Positives = 67/89 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E+ EE + K ++ DLE V++SL+PRE V+R R+G+DDGR+KTL+EIG++ V+R
Sbjct: 355 EADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTR 414
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYLVS 82
ER+RQIE+ A RKL+ R+ L+ Y+++
Sbjct: 415 ERVRQIEAKAIRKLRQPYRSSILRDYVLA 443
[123][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[124][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[125][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 93.6 bits (231), Expect = 6e-18
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[126][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ ++E E + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 351 ESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 410
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 411 ERIRQIEAKALRKLRHPNRNGVLKEYI 437
[127][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[128][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 281 DFIEDQDATSPAEHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 341 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 371
[129][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ ++E E + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 338 ESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 397
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A RKL++ RN L++Y+
Sbjct: 398 ERIRQIEAKALRKLRHPNRNGVLKEYI 424
[130][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[131][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[132][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 283 DFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 342
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 343 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
[133][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA+ E+ +++ L +VL SL PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 278 DFIEDQEAQAPAEEASYALLREQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKF 337
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ RKL++ R+K L+ YL
Sbjct: 338 GVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 368
[134][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[135][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 281 DFIEDQDATSPAEHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 341 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 371
[136][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA T + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 286 DFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVF 345
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 346 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[137][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 280 DFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 339
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 340 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 370
[138][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[139][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 92.8 bits (229), Expect = 1e-17
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ LE+VL++L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 276 DFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEF 335
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 336 GVTRERIRQIEAKALRKLRHPSRSKKLKDYL 366
[140][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[141][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[142][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 92.8 bits (229), Expect = 1e-17
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ LE+VL++L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 281 DFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 341 GVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
[143][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 281 DFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 341 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371
[144][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[145][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
RepID=C7CSZ1_ENTFA
Length = 368
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[146][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[147][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[148][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[149][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[150][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[151][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[152][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[153][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[154][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
RepID=C2C209_LISGR
Length = 389
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G +
Sbjct: 298 DFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVF 357
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 358 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 388
[155][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[156][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[157][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[158][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
RepID=RPOD_ENTFA
Length = 368
Score = 92.8 bits (229), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[159][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 92.4 bits (228), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 289 DFIEDQEAISPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 348
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 349 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 379
[160][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 92.4 bits (228), Expect = 1e-17
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 281 DFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ +L
Sbjct: 341 GVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371
[161][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F68_PEDPA
Length = 379
Score = 92.4 bits (228), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 288 DFIEDQEATSPADHAAYELLKEQLEGVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 347
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 348 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 378
[162][TOP]
>UniRef100_C9AAM5 RNA polymerase sigma-43 factor n=3 Tax=Enterococcus casseliflavus
RepID=C9AAM5_ENTCA
Length = 368
Score = 92.4 bits (228), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[163][TOP]
>UniRef100_C8ZYV7 RNA polymerase sigma-43 factor n=1 Tax=Enterococcus gallinarum EG2
RepID=C8ZYV7_ENTGA
Length = 368
Score = 92.4 bits (228), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[164][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 92.4 bits (228), Expect = 1e-17
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 273 DFIEDKDATSPEQHASYEMLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 332
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ +L
Sbjct: 333 GVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363
[165][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 92.4 bits (228), Expect = 1e-17
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 281 DFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ +L
Sbjct: 341 GVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371
[166][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C2E1K8_9LACO
Length = 364
Score = 92.4 bits (228), Expect = 1e-17
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 273 DFIEDKDATSPEQHASYEMLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 332
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ +L
Sbjct: 333 GVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363
[167][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 92.4 bits (228), Expect = 1e-17
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSNQLKDFL 372
[168][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 92.4 bits (228), Expect = 1e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ LE+VL++L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 277 DFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKKLKDFL 367
[169][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 92.0 bits (227), Expect = 2e-17
Identities = 42/91 (46%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 275 DFIEDQDAQSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 334
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 335 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 365
[170][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 92.0 bits (227), Expect = 2e-17
Identities = 42/91 (46%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D E ++ + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 278 DFIEDQEVQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 337
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 338 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 368
[171][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 92.0 bits (227), Expect = 2e-17
Identities = 43/91 (47%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A ++ + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 270 DFIEDQDATAPQDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 329
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 330 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 360
[172][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 92.0 bits (227), Expect = 2e-17
Identities = 44/91 (48%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + Q +K+ LE VLD+L RE V+R RFG++DGR +TL+E+G++
Sbjct: 287 DFIEDNEAVSPADSAAYQMLKEQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVF 346
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 347 GVTRERIRQIEAKALRKLRHPSRSKQLRDFL 377
[173][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 92.0 bits (227), Expect = 2e-17
Identities = 43/91 (47%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 286 DFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 345
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 346 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[174][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
RepID=C0XLP2_LACHI
Length = 389
Score = 92.0 bits (227), Expect = 2e-17
Identities = 43/91 (47%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 298 DFIEDQDATSPADHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 357
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 358 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 388
[175][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
11577 RepID=C0WTG9_LACBU
Length = 389
Score = 92.0 bits (227), Expect = 2e-17
Identities = 43/91 (47%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 298 DFIEDQDATSPADHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 357
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 358 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 388
[176][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 92.0 bits (227), Expect = 2e-17
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIPDDEAPAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 367
[177][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
J2-071 RepID=UPI0000F53BBC
Length = 374
Score = 91.7 bits (226), Expect = 2e-17
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G +
Sbjct: 283 DFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVF 342
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 343 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
[178][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 91.7 bits (226), Expect = 2e-17
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDQEALAPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[179][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 91.7 bits (226), Expect = 2e-17
Identities = 43/91 (47%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A ++ + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 273 DFIEDQDAMAPQDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 332
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 333 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 363
[180][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 91.7 bits (226), Expect = 2e-17
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E + +K+ LE+VLD+L RE V+R RFGMDDGR +TL+E+G+
Sbjct: 234 DFIEDHDAPAPAEAAAYELLKEQLEEVLDTLTEREENVLRLRFGMDDGRTRTLEEVGKEF 293
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 294 GVTRERIRQIEAKALRKLRHPSRSKRLKDFM 324
[181][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
RepID=RPOD_LISMO
Length = 374
Score = 91.7 bits (226), Expect = 2e-17
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G +
Sbjct: 283 DFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVF 342
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 343 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
[182][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
Length = 374
Score = 91.7 bits (226), Expect = 2e-17
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G +
Sbjct: 283 DFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVF 342
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 343 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
[183][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 91.3 bits (225), Expect = 3e-17
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 286 DFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVF 345
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 346 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[184][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 91.3 bits (225), Expect = 3e-17
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 284 DFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[185][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 91.3 bits (225), Expect = 3e-17
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 285 DFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVF 344
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 345 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 375
[186][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 91.3 bits (225), Expect = 3e-17
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 283 DFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVF 342
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 343 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
[187][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 90.9 bits (224), Expect = 4e-17
Identities = 41/91 (45%), Positives = 67/91 (73%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ + DP+A+ E+ +++ L++VL +L RE +V+R RFG+DDGR +TL+E+G++
Sbjct: 279 DFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIF 338
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 339 GVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
[188][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 90.9 bits (224), Expect = 4e-17
Identities = 43/91 (47%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EAE+ EE +++ L+ +L++L RE +V+R RFG+DDGR +TL+E+G+
Sbjct: 267 DFITDEEAESPEESASFVLLREHLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEF 326
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ Y+
Sbjct: 327 GVTRERIRQIEAKALRKLRHPSRSKKLKDYI 357
[189][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 90.9 bits (224), Expect = 4e-17
Identities = 42/87 (48%), Positives = 65/87 (74%)
Frame = -1
Query: 348 DPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSR 169
+ + E ++ + K +++DLE VL +L+PRE V+R R+G+DDGRMKTL+EIG++ V+R
Sbjct: 314 EADIENPDQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTR 373
Query: 168 ERIRQIESCAFRKLKNKKRNKHLQQYL 88
ERIRQIE+ A KL++ RN L++Y+
Sbjct: 374 ERIRQIEAKALLKLRHPNRNGVLKEYI 400
[190][TOP]
>UniRef100_C2FI52 RNA polymerase sigma factor n=2 Tax=Lactobacillus plantarum
RepID=C2FI52_LACPL
Length = 368
Score = 90.9 bits (224), Expect = 4e-17
Identities = 43/91 (47%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQDATSPADAAAYELLKEQLEGVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[191][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
RepID=A8U8N7_9LACT
Length = 373
Score = 90.9 bits (224), Expect = 4e-17
Identities = 43/91 (47%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E + +K+ LE VLD+L RE V+R RFG+DDGR +TL+++G++
Sbjct: 282 DFIEDHDATSPAENAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRNRTLEDVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 372
[192][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 90.5 bits (223), Expect = 5e-17
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + +K+ LE VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 282 DFIEDQDAPAPADAASFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R++ L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSRKLKDFL 372
[193][TOP]
>UniRef100_C6VQS5 RNA polymerase sigma factor n=1 Tax=Lactobacillus plantarum JDM1
RepID=C6VQS5_LACPJ
Length = 368
Score = 90.5 bits (223), Expect = 5e-17
Identities = 43/91 (47%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 277 DFIEDQDATSPADAAAYELLKEQLEGVLDTLTNREENVLRLRFGLDDGRTRTLEEVGKVF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 337 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[194][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 90.5 bits (223), Expect = 5e-17
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 281 DFIEDQDALAPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 341 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371
[195][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 90.1 bits (222), Expect = 7e-17
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + +K+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 285 DFIEDQDALEPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 344
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 345 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 375
[196][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
Eklund 17B RepID=B2TMC7_CLOBB
Length = 374
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 283 DFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 342
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 343 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 373
[197][TOP]
>UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC
4571 RepID=A8YVM2_LACH4
Length = 356
Score = 90.1 bits (222), Expect = 7e-17
Identities = 41/91 (45%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VL++L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 265 DFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVF 324
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ ++
Sbjct: 325 GVTRERIRQIEAKALRKLRHPSRSNQLRDFM 355
[198][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 90.1 bits (222), Expect = 7e-17
Identities = 44/91 (48%), Positives = 63/91 (69%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L +VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 281 DFIPDEDAPAPAEAAAFSLLKEQLVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 341 DVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
[199][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
8052 RepID=A6LRQ7_CLOB8
Length = 376
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 285 DFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 344
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 345 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 375
[200][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
RepID=A5N6R2_CLOK5
Length = 354
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 263 DFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 322
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 323 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 353
[201][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 277 DFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 337 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 367
[202][TOP]
>UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus
DSM 20075 RepID=C9LZ42_LACHE
Length = 370
Score = 90.1 bits (222), Expect = 7e-17
Identities = 41/91 (45%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VL++L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 279 DFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVF 338
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ ++
Sbjct: 339 GVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
[203][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
13335 RepID=C8PAI1_9LACO
Length = 382
Score = 90.1 bits (222), Expect = 7e-17
Identities = 42/91 (46%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VLD+L RE V+R RFG++DGR +TL+E+G +
Sbjct: 291 DFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVF 350
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ +L
Sbjct: 351 GVTRERIRQIEAKALRKLRHPSRSNQLKDFL 381
[204][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 270 DFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 329
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 330 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360
[205][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 277 DFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 337 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 367
[206][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
RepID=B2V2K8_CLOBA
Length = 374
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 283 DFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 342
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 343 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 373
[207][TOP]
>UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus
RepID=C2KFH9_9LACO
Length = 370
Score = 90.1 bits (222), Expect = 7e-17
Identities = 41/91 (45%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VL++L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 279 DFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVF 338
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ ++
Sbjct: 339 GVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
[208][TOP]
>UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus
RepID=C2HPX4_LACAC
Length = 370
Score = 90.1 bits (222), Expect = 7e-17
Identities = 41/91 (45%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VL++L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 279 DFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVF 338
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ ++
Sbjct: 339 GVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
[209][TOP]
>UniRef100_C2EK73 RNA polymerase sigma factor n=1 Tax=Lactobacillus ultunensis DSM
16047 RepID=C2EK73_9LACO
Length = 370
Score = 90.1 bits (222), Expect = 7e-17
Identities = 41/91 (45%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K+ LE+VL++L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 279 DFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVF 338
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ ++
Sbjct: 339 GVTRERIRQIEAKALRKLRHPSRSNQLKDFM 369
[210][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
RepID=B1QWY9_CLOBU
Length = 369
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 278 DFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 337
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 338 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 368
[211][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
RepID=A5I618_CLOBH
Length = 361
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 270 DFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 329
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 330 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360
[212][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 277 DFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 336
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 337 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 367
[213][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 89.7 bits (221), Expect = 9e-17
Identities = 44/91 (48%), Positives = 63/91 (69%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L +VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 281 DFIPDDDAPAPAEAAAFSLLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 341 DVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
[214][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 89.7 bits (221), Expect = 9e-17
Identities = 41/92 (44%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIG-EM 184
++IAD EA E+L +K+ +++VL +L PRE +V+R RFG+DDG+++TL+E+G E+
Sbjct: 182 DIIADKEAVDPVEELESMLLKEQVDEVLSTLAPREEKVLRLRFGLDDGKIRTLEEVGKEL 241
Query: 183 LGVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
G+SRER+RQIE+ A ++L++ R++ L+++L
Sbjct: 242 GGISRERVRQIETKALKRLRHPNRSRRLKEFL 273
[215][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
25644 RepID=C2E8V2_9LACO
Length = 373
Score = 89.7 bits (221), Expect = 9e-17
Identities = 42/91 (46%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D A + + + +K+ +E VLD+L RE V+R RFG+DDGR +TL+E+G++
Sbjct: 282 DFIEDHAATSPADHAAYELLKEQIESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 341
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 342 GVTRERIRQIEAKALRKLRHPSRSKQLKDFL 372
[216][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GBZ7_9FIRM
Length = 372
Score = 89.7 bits (221), Expect = 9e-17
Identities = 41/91 (45%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D + + E + +K+ L+ VL++L PRE +V+ RFG++DGR +TL+E+G++
Sbjct: 281 DFIEDQDVQAPAEAAAFELLKEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 341 GVTRERIRQIEAKALRKLRHPMRSKRLKDYL 371
[217][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 89.4 bits (220), Expect = 1e-16
Identities = 42/91 (46%), Positives = 65/91 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + +K+ LE+VLD+L RE V+R RFG++DGR +TL+E+G++
Sbjct: 225 DFIEDQDALAPADAAAFELLKEQLEEVLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVF 284
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 285 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 315
[218][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 89.4 bits (220), Expect = 1e-16
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 267 DFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 326
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 327 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
[219][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 89.4 bits (220), Expect = 1e-16
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ LE+VLD+L RE +V+R RFG+DDGR +TL+E+G+
Sbjct: 284 DFIEDQDAPAPAEAASFMLLKEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNF 343
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R++ L+ +L
Sbjct: 344 GVTRERIRQIEAKALRKLRHPSRSRKLKDFL 374
[220][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 89.4 bits (220), Expect = 1e-16
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 267 DFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 326
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 327 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
[221][TOP]
>UniRef100_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP
1055/1 RepID=B7GEJ9_PHATR
Length = 329
Score = 89.4 bits (220), Expect = 1e-16
Identities = 47/95 (49%), Positives = 64/95 (67%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+V+ DPEA+ AEE Q +K D+ +++ +LN RE VIR RFG+DDG+ KTL+EIG
Sbjct: 236 DVMGDPEAQPAEEASY-QMLKDDISRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRF 294
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYLVSXS 76
V+RERIRQIES A KL+ RN ++ Y+ S
Sbjct: 295 SVTRERIRQIESRALHKLRQPYRNHAVKCYVKDYS 329
[222][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 89.4 bits (220), Expect = 1e-16
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + +K+ L K+L++L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 287 DFIPDDEAPAPADAAAFRMLKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 346
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 347 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 377
[223][TOP]
>UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens
RepID=Q0SRH3_CLOPS
Length = 366
Score = 89.0 bits (219), Expect = 2e-16
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 275 DFIPDDDAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 334
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 335 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 365
[224][TOP]
>UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens
RepID=Q0TNV3_CLOP1
Length = 366
Score = 89.0 bits (219), Expect = 2e-16
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 275 DFIPDDDAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 334
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 335 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 365
[225][TOP]
>UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM
Length = 432
Score = 88.6 bits (218), Expect = 2e-16
Identities = 41/91 (45%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +++ LE VLD+L RE V+R RFG++DGR +TL+E+G +
Sbjct: 337 DFIEDNEAVSPADSAAYEMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVF 396
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 397 GVTRERIRQIEAKALRKLRHPSRSKQLKDFM 427
[226][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 88.6 bits (218), Expect = 2e-16
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 268 DFIPDDDAPAPAEAAAFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 327
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 328 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358
[227][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 88.6 bits (218), Expect = 2e-16
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ LE+VL++L RE +V+R RFG+DDGR +TL+E+G+
Sbjct: 280 DFIEDQDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEF 339
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 340 GVTRERIRQIEAKALRKLRHPSRSKKLKDYL 370
[228][TOP]
>UniRef100_C5RE54 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B
RepID=C5RE54_CLOCL
Length = 363
Score = 88.6 bits (218), Expect = 2e-16
Identities = 44/91 (48%), Positives = 61/91 (67%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G
Sbjct: 272 DFIPDDDAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGREF 331
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 332 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 362
[229][TOP]
>UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC
Length = 432
Score = 88.6 bits (218), Expect = 2e-16
Identities = 41/91 (45%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA + + + +++ LE VLD+L RE V+R RFG++DGR +TL+E+G +
Sbjct: 337 DFIEDNEAVSPADSAAYEMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVF 396
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 397 GVTRERIRQIEAKALRKLRHPSRSKQLKDFM 427
[230][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 88.2 bits (217), Expect = 3e-16
Identities = 42/91 (46%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + + +K+ LE VLD+L RE V+R RFG++DGR +TL+E+G++
Sbjct: 276 DFIEDQDALAPADAASYELLKEQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVF 335
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 336 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 366
[231][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 88.2 bits (217), Expect = 3e-16
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 275 DFIPDDDALAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 334
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 335 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 365
[232][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 88.2 bits (217), Expect = 3e-16
Identities = 42/91 (46%), Positives = 63/91 (69%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D E E+ E Q +K LE+VL +L RE V+R RFG++DG+ +TL+E+G +
Sbjct: 373 DFIEDNEGESPIESTSDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVF 432
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 433 GVTRERIRQIEAKALRKLRHPSRSKQLKDFM 463
[233][TOP]
>UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA
RepID=C1IAB3_9CLOT
Length = 370
Score = 88.2 bits (217), Expect = 3e-16
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 279 DFIPDDDALAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 338
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ YL
Sbjct: 339 NVTRERIRQIEAKALRKLRHPSRSKKLKDYL 369
[234][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
RepID=A0NJA0_OENOE
Length = 458
Score = 88.2 bits (217), Expect = 3e-16
Identities = 42/91 (46%), Positives = 63/91 (69%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D E E+ E Q +K LE+VL +L RE V+R RFG++DG+ +TL+E+G +
Sbjct: 366 DFIEDNEGESPIESTSDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVF 425
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ ++
Sbjct: 426 GVTRERIRQIEAKALRKLRHPSRSKQLKDFM 456
[235][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R970_THETN
Length = 372
Score = 87.8 bits (216), Expect = 3e-16
Identities = 43/91 (47%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 281 DFIPDEDAPAPAEAAAYTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 341 NVTRERIRQIEAKALRKLRHPSRSKKLKDFL 371
[236][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 87.8 bits (216), Expect = 3e-16
Identities = 42/91 (46%), Positives = 63/91 (69%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D EA E+ +++ L++VL +L RE +V+R RFG+DDGR +TL+E+G+
Sbjct: 272 DFIEDHEARAPAEEASFTLLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKF 331
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ RKL++ R+K L+ YL
Sbjct: 332 GVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 362
[237][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
delbrueckii subsp. lactis RepID=Q71HU9_LACDL
Length = 167
Score = 87.8 bits (216), Expect = 3e-16
Identities = 41/91 (45%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K L +VLD+L RE V+R RFG+DDG +TL+E+G +
Sbjct: 76 DFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVF 135
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ +L
Sbjct: 136 GVTRERIRQIEAKALRKLRHPSRSNQLRDFL 166
[238][TOP]
>UniRef100_A8VUB1 RNA polymerase sigma factor n=1 Tax=Bacillus selenitireducens MLS10
RepID=A8VUB1_9BACI
Length = 73
Score = 87.8 bits (216), Expect = 3e-16
Identities = 41/72 (56%), Positives = 57/72 (79%)
Frame = -1
Query: 303 MKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFRKLK 124
MK+ LE VLD+L RE V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A RKL+
Sbjct: 1 MKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 60
Query: 123 NKKRNKHLQQYL 88
+ R+K L+ +L
Sbjct: 61 HPSRSKRLKDFL 72
[239][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
Length = 372
Score = 87.4 bits (215), Expect = 4e-16
Identities = 41/91 (45%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A + E+ + +K L +VLD+L RE V+R RFG+DDG +TL+E+G +
Sbjct: 281 DFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVF 340
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+ L+ +L
Sbjct: 341 GVTRERIRQIEAKALRKLRHPSRSNKLRDFL 371
[240][TOP]
>UniRef100_A9BHB2 RNA polymerase sigma factor n=1 Tax=Petrotoga mobilis SJ95
RepID=A9BHB2_PETMO
Length = 414
Score = 87.4 bits (215), Expect = 4e-16
Identities = 40/89 (44%), Positives = 64/89 (71%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ + D EA+ EE ++ +K+++EKVL+SL P+E V++ R+G+ DG+MKTL+E+G
Sbjct: 316 DFLEDSEADQPEEIAVRMILKEEIEKVLESLRPKEATVLKMRYGLLDGKMKTLEEVGNFF 375
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQ 94
V+RERIRQIE A RKL++ R+ L++
Sbjct: 376 NVTRERIRQIEVKALRKLRHPSRSLQLKE 404
[241][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
RepID=P77870_HELMO
Length = 333
Score = 87.4 bits (215), Expect = 4e-16
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ LE+VL++L RE +V+R RFG+DDGR +TL+E+G+
Sbjct: 242 DFIEDQDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEF 301
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ A RKL++ R+K L+ Y+
Sbjct: 302 GVTRERIRQIEAKALRKLRHPSRSKKLKDYV 332
[242][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
Length = 357
Score = 87.4 bits (215), Expect = 4e-16
Identities = 43/91 (47%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 266 DFIPDEDAPAPAEAAAFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 325
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 326 NVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356
[243][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PMA8_9THEO
Length = 357
Score = 87.4 bits (215), Expect = 4e-16
Identities = 43/91 (47%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 266 DFIPDEDAPAPAEAAAFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 325
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 326 NVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356
[244][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
RepID=B0K6Y0_THEPX
Length = 357
Score = 87.4 bits (215), Expect = 4e-16
Identities = 43/91 (47%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 266 DFIPDEDAPAPAEAAAFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 325
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 326 NVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356
[245][TOP]
>UniRef100_B9K8D5 RNA polymerase sigma factor n=1 Tax=Thermotoga neapolitana DSM 4359
RepID=B9K8D5_THENN
Length = 392
Score = 87.0 bits (214), Expect = 6e-16
Identities = 40/91 (43%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ +AD + +++ ++ M+++LEKVL +L+PRE V+R R+G+ DG+ KTL+E+G+
Sbjct: 294 DFVADESVPSPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYF 353
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE A RKL++ R+K+L+ L
Sbjct: 354 NVTRERIRQIEVKALRKLRHPSRSKYLKSLL 384
[246][TOP]
>UniRef100_A8F8P3 RNA polymerase sigma factor n=1 Tax=Thermotoga lettingae TMO
RepID=A8F8P3_THELT
Length = 400
Score = 87.0 bits (214), Expect = 6e-16
Identities = 39/91 (42%), Positives = 66/91 (72%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ +AD + +++ ++ M+++LEKVL +LNPRE V++ R+G+ DG+ KTL+E+G+
Sbjct: 303 DFVADENITSPKKEAMRMLMREELEKVLKTLNPREAMVLKMRYGLLDGKAKTLEEVGQYF 362
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE A RKL++ R+K+L+ +
Sbjct: 363 NVTRERIRQIEVKALRKLRHPSRSKYLKSLI 393
[247][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
RepID=A4J7B9_DESRM
Length = 367
Score = 87.0 bits (214), Expect = 6e-16
Identities = 41/91 (45%), Positives = 63/91 (69%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E+ +++ L++VL +L RE +V+R RFG+DDGR +TL+E+G+
Sbjct: 276 DFIEDADARAPAEEASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKF 335
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ RKL++ R+K L+ YL
Sbjct: 336 GVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 366
[248][TOP]
>UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium
thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS
Length = 357
Score = 87.0 bits (214), Expect = 6e-16
Identities = 43/91 (47%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A E +K+ L VLD+L PRE +V+R RFG+DDGR +TL+E+G+
Sbjct: 266 DFIPDEDAPAPAEAAAFTMLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEF 325
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R+K L+ +L
Sbjct: 326 NVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356
[249][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 87.0 bits (214), Expect = 6e-16
Identities = 42/91 (46%), Positives = 62/91 (68%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D E + +K+ L++VLD+L RE +V+R RFGMDDGR +TL+E+G+
Sbjct: 291 DFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEF 350
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
V+RERIRQIE+ A RKL++ R++ L+ YL
Sbjct: 351 DVTRERIRQIEAKALRKLRHPSRSRKLRDYL 381
[250][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
audaxviator MP104C RepID=B1I1U1_DESAP
Length = 360
Score = 86.7 bits (213), Expect = 7e-16
Identities = 41/91 (45%), Positives = 63/91 (69%)
Frame = -1
Query: 360 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPRENQVIRWRFGMDDGRMKTLQEIGEML 181
+ I D +A+ E+ +++ L+ VL +L RE +V+R RFG+DDGR +TL+E+G+
Sbjct: 269 DFIEDQDAQAPAEEASFTLLREQLDDVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEF 328
Query: 180 GVSRERIRQIESCAFRKLKNKKRNKHLQQYL 88
GV+RERIRQIE+ RKL++ R+K L+ YL
Sbjct: 329 GVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 359