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[1][TOP]
>UniRef100_B9SDF8 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9SDF8_RICCO
Length = 508
Score = 231 bits (589), Expect = 2e-59
Identities = 112/128 (87%), Positives = 121/128 (94%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEA+SKVFSLDREAFPSLNGLPG+THH YIADN LEN PWHGVD+W LKDEVNK
Sbjct: 381 KKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGVDDWALKDEVNK 440
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LIN+TL ERE+EIIRLYYGLD E LTWEDISKRIGLSRERVRQVGLVALEKLKHAARK++
Sbjct: 441 LINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKK 500
Query: 363 MEAMLLKH 386
+EAML+KH
Sbjct: 501 LEAMLVKH 508
[2][TOP]
>UniRef100_B9I6T5 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6T5_POPTR
Length = 499
Score = 231 bits (588), Expect = 3e-59
Identities = 112/128 (87%), Positives = 121/128 (94%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVRNATEAISKVFSLDREAFPSLNGLPG+THH YIADNRLEN PWHGVDEW LK+EVNK
Sbjct: 372 RKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGVDEWALKEEVNK 431
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LI+ L EREREIIRLY+GLDKECLTWEDISKR+GLSRERVRQVGLVALEKLKHAARK +
Sbjct: 432 LIDSALQEREREIIRLYHGLDKECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKGK 491
Query: 363 MEAMLLKH 386
+EAML+KH
Sbjct: 492 LEAMLVKH 499
[3][TOP]
>UniRef100_Q9SLX3 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX3_TOBAC
Length = 502
Score = 229 bits (585), Expect = 6e-59
Identities = 112/128 (87%), Positives = 119/128 (92%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEA SKVFSLDREAFPSLNGLPG+T H YIADNRLENIPWHGVDEW LKDEVN
Sbjct: 375 KKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLENIPWHGVDEWMLKDEVNN 434
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LI+ TL EREREI+RLYYGLD ECLTWEDIS+RIGLSRERVRQVGLVALEKLKHAARKR
Sbjct: 435 LISSTLREREREIVRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKRR 494
Query: 363 MEAMLLKH 386
++AML+KH
Sbjct: 495 LDAMLVKH 502
[4][TOP]
>UniRef100_B9IPY1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPY1_POPTR
Length = 509
Score = 228 bits (582), Expect = 1e-58
Identities = 111/128 (86%), Positives = 120/128 (93%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVRNATEAISKVFSLDREAFPSLNGLPG+THH YIADNR EN PWHGVDEW LK+EVNK
Sbjct: 382 RKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNPWHGVDEWALKEEVNK 441
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LI+ TL ERE+EIIRLY+GLD+ECLTWEDISKR+GLSRERVRQVGLVALEKLKHAARKR
Sbjct: 442 LIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKRN 501
Query: 363 MEAMLLKH 386
EAML+KH
Sbjct: 502 TEAMLVKH 509
[5][TOP]
>UniRef100_O49935 Sig1 protein n=1 Tax=Sinapis alba RepID=O49935_SINAL
Length = 481
Score = 227 bits (579), Expect = 3e-58
Identities = 111/128 (86%), Positives = 121/128 (94%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEA+SK+FSLDR+AFPSLNGLPG+THH YIADNRLEN PWHG D LKDEV+K
Sbjct: 354 KKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLENNPWHGYDALALKDEVSK 413
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LI+VTL EREREIIRLYYGLDKECLTWEDIS+RIGLSRERVRQVGLVALEKLKHAARKR+
Sbjct: 414 LISVTLGEREREIIRLYYGLDKECLTWEDISQRIGLSRERVRQVGLVALEKLKHAARKRK 473
Query: 363 MEAMLLKH 386
MEAM+LK+
Sbjct: 474 MEAMILKN 481
[6][TOP]
>UniRef100_UPI0001984E9A PREDICTED: hypothetical protein isoform 2 n=1 Tax=Vitis vinifera
RepID=UPI0001984E9A
Length = 496
Score = 226 bits (575), Expect = 9e-58
Identities = 113/128 (88%), Positives = 118/128 (92%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEAISKVFSLDREAFPSLNGLPG+T H YIAD RLEN PWHGVDEW LKDEVNK
Sbjct: 369 KKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNK 428
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LIN TL ERER+IIRLYYGLD ECLTWEDISKRIGLSRERVRQVGLVALEKLK+AARK
Sbjct: 429 LINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGR 488
Query: 363 MEAMLLKH 386
MEAML+K+
Sbjct: 489 MEAMLVKY 496
[7][TOP]
>UniRef100_UPI0001984E99 PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vinifera
RepID=UPI0001984E99
Length = 507
Score = 226 bits (575), Expect = 9e-58
Identities = 113/128 (88%), Positives = 118/128 (92%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEAISKVFSLDREAFPSLNGLPG+T H YIAD RLEN PWHGVDEW LKDEVNK
Sbjct: 380 KKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNK 439
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LIN TL ERER+IIRLYYGLD ECLTWEDISKRIGLSRERVRQVGLVALEKLK+AARK
Sbjct: 440 LINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGR 499
Query: 363 MEAMLLKH 386
MEAML+K+
Sbjct: 500 MEAMLVKY 507
[8][TOP]
>UniRef100_A7PAZ2 Chromosome chr16 scaffold_10, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PAZ2_VITVI
Length = 486
Score = 226 bits (575), Expect = 9e-58
Identities = 113/128 (88%), Positives = 118/128 (92%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEAISKVFSLDREAFPSLNGLPG+T H YIAD RLEN PWHGVDEW LKDEVNK
Sbjct: 359 KKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNK 418
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LIN TL ERER+IIRLYYGLD ECLTWEDISKRIGLSRERVRQVGLVALEKLK+AARK
Sbjct: 419 LINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGR 478
Query: 363 MEAMLLKH 386
MEAML+K+
Sbjct: 479 MEAMLVKY 486
[9][TOP]
>UniRef100_Q9FPH1 At1g64860 n=1 Tax=Arabidopsis thaliana RepID=Q9FPH1_ARATH
Length = 502
Score = 224 bits (570), Expect = 3e-57
Identities = 109/128 (85%), Positives = 120/128 (93%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEA+SKVFSLDR+AFPSLNGLPG+THH YIAD RLEN PWHG D+ LK+EV+K
Sbjct: 375 KKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSK 434
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LI+ TL ERE+EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR+
Sbjct: 435 LISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRK 494
Query: 363 MEAMLLKH 386
MEAM+LK+
Sbjct: 495 MEAMILKN 502
[10][TOP]
>UniRef100_O24629 AT1G64860 protein n=2 Tax=Arabidopsis thaliana RepID=O24629_ARATH
Length = 502
Score = 224 bits (570), Expect = 3e-57
Identities = 109/128 (85%), Positives = 120/128 (93%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEA+SKVFSLDR+AFPSLNGLPG+THH YIAD RLEN PWHG D+ LK+EV+K
Sbjct: 375 KKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSK 434
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LI+ TL ERE+EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR+
Sbjct: 435 LISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRK 494
Query: 363 MEAMLLKH 386
MEAM+LK+
Sbjct: 495 MEAMILKN 502
[11][TOP]
>UniRef100_O22576 RNA polymerase sigma subunit 1 n=1 Tax=Arabidopsis thaliana
RepID=O22576_ARATH
Length = 502
Score = 224 bits (570), Expect = 3e-57
Identities = 109/128 (85%), Positives = 120/128 (93%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEA+SKVFSLDR+AFPSLNGLPG+THH YIAD RLEN PWHG D+ LK+EV+K
Sbjct: 375 KKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSK 434
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LI+ TL ERE+EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR+
Sbjct: 435 LISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRK 494
Query: 363 MEAMLLKH 386
MEAM+LK+
Sbjct: 495 MEAMILKN 502
[12][TOP]
>UniRef100_O22057 Plastid RNA polymerase sigma-subunit n=1 Tax=Arabidopsis thaliana
RepID=O22057_ARATH
Length = 502
Score = 224 bits (570), Expect = 3e-57
Identities = 109/128 (85%), Positives = 120/128 (93%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEA+SKVFSLDR+AFPSLNGLPG+THH YIAD RLEN PWHG D+ LK+EV+K
Sbjct: 375 KKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSK 434
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LI+ TL ERE+EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR+
Sbjct: 435 LISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRK 494
Query: 363 MEAMLLKH 386
MEAM+LK+
Sbjct: 495 MEAMILKN 502
[13][TOP]
>UniRef100_Q9SLX4 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX4_TOBAC
Length = 508
Score = 219 bits (557), Expect = 1e-55
Identities = 107/127 (84%), Positives = 116/127 (91%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVRNATEA SK++SLDREAFPSLNGLPG+T H YIADN LEN PWHGVD W LKDEVN
Sbjct: 381 KKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNHLENNPWHGVDVWALKDEVNN 440
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LI+ TL +REREIIRLYYGLD ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR+
Sbjct: 441 LISSTLRDREREIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRQ 500
Query: 363 MEAMLLK 383
++AML+K
Sbjct: 501 LDAMLIK 507
[14][TOP]
>UniRef100_Q7EY08 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
Japonica Group RepID=Q7EY08_ORYSJ
Length = 388
Score = 188 bits (477), Expect = 2e-46
Identities = 87/125 (69%), Positives = 108/125 (86%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N PWHG +EW LK+EVNK
Sbjct: 261 KKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNK 320
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
L+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQVGL+A+EKLKHAAR++
Sbjct: 321 LLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKN 380
Query: 363 MEAML 377
+EA+L
Sbjct: 381 LEALL 385
[15][TOP]
>UniRef100_Q0J7T6 Os08g0163400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q0J7T6_ORYSJ
Length = 520
Score = 188 bits (477), Expect = 2e-46
Identities = 87/125 (69%), Positives = 108/125 (86%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N PWHG +EW LK+EVNK
Sbjct: 393 KKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNK 452
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
L+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQVGL+A+EKLKHAAR++
Sbjct: 453 LLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKN 512
Query: 363 MEAML 377
+EA+L
Sbjct: 513 LEALL 517
[16][TOP]
>UniRef100_O48655 Plastid RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
Group RepID=O48655_ORYSJ
Length = 519
Score = 188 bits (477), Expect = 2e-46
Identities = 87/125 (69%), Positives = 108/125 (86%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N PWHG +EW LK+EVNK
Sbjct: 392 KKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNK 451
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
L+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQVGL+A+EKLKHAAR++
Sbjct: 452 LLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKN 511
Query: 363 MEAML 377
+EA+L
Sbjct: 512 LEALL 516
[17][TOP]
>UniRef100_A3BPX7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BPX7_ORYSJ
Length = 420
Score = 188 bits (477), Expect = 2e-46
Identities = 87/125 (69%), Positives = 108/125 (86%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N PWHG +EW LK+EVNK
Sbjct: 293 KKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNK 352
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
L+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQVGL+A+EKLKHAAR++
Sbjct: 353 LLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKN 412
Query: 363 MEAML 377
+EA+L
Sbjct: 413 LEALL 417
[18][TOP]
>UniRef100_Q7EY07 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
RepID=Q7EY07_ORYSJ
Length = 342
Score = 188 bits (477), Expect = 2e-46
Identities = 87/125 (69%), Positives = 108/125 (86%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA++KV SLD++AFPSLNGLPG+T H YI D + N PWHG +EW LK+EVNK
Sbjct: 215 KKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNK 274
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
L+N TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQVGL+A+EKLKHAAR++
Sbjct: 275 LLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKN 334
Query: 363 MEAML 377
+EA+L
Sbjct: 335 LEALL 339
[19][TOP]
>UniRef100_C5YHG2 Putative uncharacterized protein Sb07g004340 n=1 Tax=Sorghum
bicolor RepID=C5YHG2_SORBI
Length = 500
Score = 183 bits (464), Expect = 7e-45
Identities = 87/125 (69%), Positives = 106/125 (84%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA++KV SLD++AFPSLNGLPGDT H YI D + N PWHG +E LK+EVN
Sbjct: 373 KKVHNATEAVNKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNN 432
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LIN TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQVGLVA+EKLKHAAR++
Sbjct: 433 LINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARRKH 492
Query: 363 MEAML 377
++A+L
Sbjct: 493 LDALL 497
[20][TOP]
>UniRef100_Q9ZTI3 RNA polymerase sigma factor 1 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI3_MAIZE
Length = 398
Score = 181 bits (460), Expect = 2e-44
Identities = 87/125 (69%), Positives = 104/125 (83%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA+ KV SLD++AFPSLNGLPGDT H YI D + N PWHG +E LK+EVN
Sbjct: 271 KKVHNATEAVHKVISLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNS 330
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LIN TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQVGLVA+EKLKHAAR+
Sbjct: 331 LINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARREH 390
Query: 363 MEAML 377
++A+L
Sbjct: 391 LDALL 395
[21][TOP]
>UniRef100_B4FP19 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FP19_MAIZE
Length = 496
Score = 181 bits (460), Expect = 2e-44
Identities = 87/125 (69%), Positives = 104/125 (83%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA+ KV SLD++AFPSLNGLPGDT H YI D + N PWHG +E LK+EVN
Sbjct: 369 KKVHNATEAVHKVISLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNS 428
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LIN TL ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQVGLVA+EKLKHAAR+
Sbjct: 429 LINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARREH 488
Query: 363 MEAML 377
++A+L
Sbjct: 489 LDALL 493
[22][TOP]
>UniRef100_O24348 Plastid RNA polymerase sigma factor n=1 Tax=Sorghum bicolor
RepID=O24348_SORBI
Length = 500
Score = 181 bits (459), Expect = 3e-44
Identities = 86/125 (68%), Positives = 105/125 (84%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA++KV SLD++AFPSLNGLPGDT H YI D + N PWHG +E LK+EVN
Sbjct: 373 KKVHNATEAVNKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNN 432
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LIN L ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQVGLVA+EKLKHAAR++
Sbjct: 433 LINSNLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARRKH 492
Query: 363 MEAML 377
++A+L
Sbjct: 493 LDALL 497
[23][TOP]
>UniRef100_Q9ZP70 Chloroplast sigma factor (Fragment) n=1 Tax=Triticum aestivum
RepID=Q9ZP70_WHEAT
Length = 461
Score = 181 bits (458), Expect = 3e-44
Identities = 82/125 (65%), Positives = 105/125 (84%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA++K SLD++AFPSLNGLPGDT H YI D + N PWHG +EW LK+EVNK
Sbjct: 334 KKVHNATEAVNKALSLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEEWYLKEEVNK 393
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
L+N L ERER+II+LY+G+ K+C TWEDIS++ GLSRERVRQVGL+A+EKLK AR+++
Sbjct: 394 LLNSNLTERERDIIQLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKQRARRKK 453
Query: 363 MEAML 377
++A+L
Sbjct: 454 LDALL 458
[24][TOP]
>UniRef100_Q9ZTI2 RNA polymerase sigma factor 2 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI2_MAIZE
Length = 349
Score = 177 bits (449), Expect = 4e-43
Identities = 85/125 (68%), Positives = 102/125 (81%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV NATEA+ KV SLD++AFPSLNGLPGDT H YI D + N PWHG +E LK+EVN
Sbjct: 222 KKVHNATEAVHKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEEMYLKEEVNN 281
Query: 183 LINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
LIN L ERER+IIRLY+G+ K+C TWEDIS++ GLSRERVRQV LVA+EKLKHAAR++
Sbjct: 282 LINSNLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVRLVAMEKLKHAARRKH 341
Query: 363 MEAML 377
+ A+L
Sbjct: 342 LNALL 346
[25][TOP]
>UniRef100_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens
RepID=A9SW01_PHYPA
Length = 677
Score = 90.9 bits (224), Expect = 5e-17
Identities = 50/128 (39%), Positives = 80/128 (62%), Gaps = 4/128 (3%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDRE-AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
K++N + K+ SLD+E +L G+T H +AD +EN PW V+ +KD+V+K
Sbjct: 546 KIKNTLQVTKKLVSLDKEIGRNTLQSGDGETLHSLVADRDIENQPWTIVERMLMKDDVDK 605
Query: 183 LINVTLVEREREIIRLYYGLDKE---CLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 353
L+ L RER+I+RL+YG+ +E ++ E IS R G+SRERVRQ+ A+ KL+ +R
Sbjct: 606 LLTSQLGPRERDIVRLHYGVGREDGSVMSLESISYRYGVSRERVRQLETAAMRKLQIKSR 665
Query: 354 KREMEAML 377
++ ++ L
Sbjct: 666 EQGLDRYL 673
[26][TOP]
>UniRef100_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV14_SULAA
Length = 282
Score = 67.8 bits (164), Expect = 4e-10
Identities = 51/126 (40%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV+NA + + SLD P G D I + + E TLK+E +
Sbjct: 160 KKVKNALAIVRQPISLD---MPLGEGGEEDFTLLDILSKKGTEDVEKDLVESTLKEEFER 216
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
L+NV L EREREII+L YGL+ E T E++ + +G+SRERVRQ+ AL+KLK A K+
Sbjct: 217 LLNV-LDEREREIIKLRYGLEGLEPKTLEEVGEMLGISRERVRQLEQRALKKLKAVALKK 275
Query: 360 EMEAML 377
++ L
Sbjct: 276 HLQNFL 281
[27][TOP]
>UniRef100_C1ZU97 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodothermus
marinus DSM 4252 RepID=C1ZU97_RHOMR
Length = 279
Score = 65.5 bits (158), Expect = 2e-09
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+K+R A + + S+D D + N + P G+ E +LK ++ +
Sbjct: 159 EKIREALQHTGRALSMDAPFTDD-----DDNSLLDVLPNEEDTSPDEGLMEESLKIDIER 213
Query: 183 LINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
++ TL RE EIIRLY+G+ +E LT E+I +R GL+RERVRQ+ AL KL+ R+
Sbjct: 214 ALS-TLHPREAEIIRLYFGIGREHPLTLEEIGQRFGLTRERVRQIKEKALRKLRQKHRRE 272
Query: 360 EME 368
E++
Sbjct: 273 ELQ 275
[28][TOP]
>UniRef100_UPI00016C45A8 transcription initiation factor sigma 70 n=1 Tax=Gemmata
obscuriglobus UQM 2246 RepID=UPI00016C45A8
Length = 556
Score = 64.7 bits (156), Expect = 4e-09
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = +3
Query: 45 SLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREII 224
SLDR S + GD +I DN +E+ P + LKD++ ++ TL REREII
Sbjct: 443 SLDRPVGESEDSYFGD----FIEDNSVES-PVNAATNEMLKDKIEGVLK-TLTYREREII 496
Query: 225 RLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAML 377
+L YGL D T E++ + ++RERVRQ+ A+ KL+H R R++E L
Sbjct: 497 KLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSRQLEGFL 548
[29][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 63.5 bits (153), Expect = 8e-09
Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KK + E + + SL+ NG GD IAD + P ++ LK++V++
Sbjct: 153 KKAKVLLEIVQGIVSLEEPVGEDENGKLGDI----IADKEAVD-PVEELESMLLKEQVDE 207
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIG-LSRERVRQVGLVALEKLKHAARK 356
+++ TL RE +++RL +GLD + T E++ K +G +SRERVRQ+ AL++L+H R
Sbjct: 208 VLS-TLAPREEKVLRLRFGLDDGKIRTLEEVGKELGGISRERVRQIETKALKRLRHPNRS 266
Query: 357 REMEAML 377
R ++ L
Sbjct: 267 RRLKEFL 273
[30][TOP]
>UniRef100_B2VA41 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2VA41_SULSY
Length = 281
Score = 62.8 bits (151), Expect = 1e-08
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGD-THHCYIADNRLENIPWHGVDEWTLKDEVN 179
KKV+NA + SLD P G D T ++ E+I ++E T+ E+
Sbjct: 159 KKVKNALSIVRLPISLD---MPLGEGGEEDFTLLDVLSKKGTEDIEKELIEE-TIHKELE 214
Query: 180 KLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 356
+++V L ERE+EII++ YGLD +E T E++ +++G+SRERVRQ+ AL+KLK A K
Sbjct: 215 SMLDV-LDEREKEIIKMRYGLDGEEPKTLEEVGEKLGISRERVRQLEQRALKKLKAVALK 273
Query: 357 REMEAML 377
+ ++ L
Sbjct: 274 KHLKDFL 280
[31][TOP]
>UniRef100_C6W468 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Dyadobacter fermentans DSM 18053 RepID=C6W468_DYAFD
Length = 287
Score = 62.8 bits (151), Expect = 1e-08
Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = +3
Query: 108 IADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKE-CLTWEDISKRI 284
+ +N LE+ P G+ +L+ EV + + TL +RE ++I LY+GL+ E +T E+I ++
Sbjct: 197 VLENDLEDKPDSGLVNESLRKEVQRAL-CTLTQREADVIALYFGLNGEHAMTLEEIGEKF 255
Query: 285 GLSRERVRQVGLVALEKLKHAARKREMEAML 377
L+RERVRQ+ A+ +L+H +R + ++ L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHVSRSKALKTYL 286
[32][TOP]
>UniRef100_Q1PW65 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1PW65_9BACT
Length = 551
Score = 62.4 bits (150), Expect = 2e-08
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Frame = +3
Query: 45 SLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREII 224
SLDR S + GD +I D + E+ P + LKD++ ++ TL REREII
Sbjct: 439 SLDRPVGESEDSSFGD----FIEDEKAES-PVAAATQEMLKDKIESVLE-TLTYREREII 492
Query: 225 RLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAML 377
+L YG+ D T E++ K ++RERVRQ+ A+ KL+H R R++E L
Sbjct: 493 KLRYGIGDGYTYTLEEVGKIFKVTRERVRQIEAKAVRKLQHPIRSRKLEGFL 544
[33][TOP]
>UniRef100_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1Q6A4_9BACT
Length = 491
Score = 61.6 bits (148), Expect = 3e-08
Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ K+++ TL REREII+L +G+ D + E+I KR ++RER+RQ+ +AL KL
Sbjct: 415 LKEQIQKVLD-TLSYREREIIKLRFGISDGYTHSLEEIGKRFNITRERIRQIEAIALRKL 473
Query: 339 KHAARKREMEAML 377
+H R R++E L
Sbjct: 474 QHPVRSRKLEGFL 486
[34][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 60.8 bits (146), Expect = 5e-08
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR + + SL+ + GD +I DN E+ P + LKD++ ++
Sbjct: 345 KVREIQKIAQEPVSLETPIGEENDSHLGD----FIEDNEGES-PIESTSDQMLKDQLEEV 399
Query: 186 INVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
+ TL ERE ++RL +GL D + T E++ + G++RER+RQ+ AL KL+H +R ++
Sbjct: 400 LG-TLTEREENVLRLRFGLEDGKTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 458
Query: 363 ME 368
++
Sbjct: 459 LK 460
[35][TOP]
>UniRef100_C1ZAZ0 RNA polymerase sigma factor n=1 Tax=Planctomyces limnophilus DSM
3776 RepID=C1ZAZ0_PLALI
Length = 550
Score = 60.5 bits (145), Expect = 7e-08
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = +3
Query: 45 SLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREII 224
SLDR S + GD +I D+ E+ P + LKD+++ ++ TL REREII
Sbjct: 436 SLDRPVGESEDSYFGD----FIEDDNTES-PVMAATQEMLKDKIDNVLK-TLTYREREII 489
Query: 225 RLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAML 377
+L YGL D T E++ + ++RERVRQ+ A+ KL+H R ++++ L
Sbjct: 490 KLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLKGFL 541
[36][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
RepID=A0NJA0_OENOE
Length = 458
Score = 60.5 bits (145), Expect = 7e-08
Identities = 32/89 (35%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKR 281
+I DN E+ P + LKD++ +++ TL ERE ++RL +GL D + T E++ +
Sbjct: 367 FIEDNEGES-PIESTSDQMLKDQLEEVLG-TLTEREENVLRLRFGLEDGKTRTLEEVGRV 424
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREME 368
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 425 FGVTRERIRQIEAKALRKLRHPSRSKQLK 453
[37][TOP]
>UniRef100_C4CVR1 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Spirosoma
linguale DSM 74 RepID=C4CVR1_9SPHI
Length = 287
Score = 60.1 bits (144), Expect = 9e-08
Identities = 32/91 (35%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = +3
Query: 108 IADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKE-CLTWEDISKRI 284
+ +N E+ P G+ +L+ EV + ++ TL +RE ++I LY+GL+ E +T E+I ++
Sbjct: 197 VLENDGEDKPDSGLINDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKF 255
Query: 285 GLSRERVRQVGLVALEKLKHAARKREMEAML 377
L+RERVRQ+ A+ +L+H +R + ++ L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKALKTYL 286
[38][TOP]
>UniRef100_C4FJU2 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium
yellowstonense SS-5 RepID=C4FJU2_9AQUI
Length = 78
Score = 59.7 bits (143), Expect = 1e-07
Identities = 33/76 (43%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Frame = +3
Query: 153 EWTLKDEVNKLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVAL 329
E T+ +E+ +++V L ERE+EII++ YGL+ +E T E++ +++G+SRERVRQ+ AL
Sbjct: 3 EETIHEELESMLDV-LDEREKEIIKMRYGLNGEESRTLEEVGEKLGISRERVRQLEQRAL 61
Query: 330 EKLKHAARKREMEAML 377
+KLK A K+ ++ L
Sbjct: 62 KKLKAVALKKHLKDFL 77
[39][TOP]
>UniRef100_B0AB34 RNA polymerase sigma factor n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0AB34_9CLOT
Length = 294
Score = 59.7 bits (143), Expect = 1e-07
Identities = 29/87 (33%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Frame = +3
Query: 111 ADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIG 287
+D ++ H V++ LK+++N+L+ L E+E++++R+ +GLD + T E+I K G
Sbjct: 206 SDANFSDVVMHEVEQHNLKEKINELLT-GLSEQEQKVLRMRFGLDDDDPKTLEEIGKVFG 264
Query: 288 LSRERVRQVGLVALEKLKHAARKREME 368
++RER+RQ+ A+ KL+H +R +++
Sbjct: 265 VTRERIRQIEAKAIRKLRHPSRLNQLK 291
[40][TOP]
>UniRef100_A3ZZZ4 RNA polymerase sigma factor n=1 Tax=Blastopirellula marina DSM 3645
RepID=A3ZZZ4_9PLAN
Length = 567
Score = 59.7 bits (143), Expect = 1e-07
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
++VR + + SLDR S + G+ +I D+ E P L+D +
Sbjct: 442 EEVRRVMDIGRQPVSLDRPIGESEDSSFGE----FIEDSH-EETPIRSASNQILRDRIQG 496
Query: 183 LINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
L+ TL REREII+L YGL D T E++ + ++RERVRQ+ A+ KL+H R +
Sbjct: 497 LLK-TLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSQ 555
Query: 360 EMEAML 377
++E L
Sbjct: 556 QLEGFL 561
[41][TOP]
>UniRef100_A7NS26 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NS26_ROSCS
Length = 399
Score = 59.3 bits (142), Expect = 1e-07
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR EA SL+ G GD +I D+R+ P L++++ ++
Sbjct: 280 KVRRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRIST-PAEAAAASMLREQLEEV 334
Query: 186 INVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
+ L ERER+II+L YGL D T E++ G++RER+RQ+ VAL KL+H ++
Sbjct: 335 LQ-KLPERERKIIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKK 393
Query: 363 MEAML 377
+ L
Sbjct: 394 LRGYL 398
[42][TOP]
>UniRef100_A5UPS4 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UPS4_ROSS1
Length = 402
Score = 59.3 bits (142), Expect = 1e-07
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR EA SL+ G GD +I D+R+ P L++++ ++
Sbjct: 283 KVRRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRIST-PAEAAAASMLREQLEEV 337
Query: 186 INVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
+ L ERER+II+L YGL D T E++ G++RER+RQ+ VAL KL+H ++
Sbjct: 338 LQ-KLPERERKIIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKK 396
Query: 363 MEAML 377
+ L
Sbjct: 397 LRGYL 401
[43][TOP]
>UniRef100_B8G6G0 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
RepID=B8G6G0_CHLAD
Length = 381
Score = 58.9 bits (141), Expect = 2e-07
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR EA SL+ G GD +I D+R+ P L++++ ++
Sbjct: 262 KVRRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRIST-PAEAAAASLLREQLEEV 316
Query: 186 INVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
+ + L ERER+II+L YGL D T E++ G++RER+RQ+ VAL KL+H ++
Sbjct: 317 L-MKLPERERKIIQLRYGLKDGRYRTLEEVGIEFGITRERIRQIEAVALRKLRHPHLGKK 375
Query: 363 MEAML 377
+ L
Sbjct: 376 LRGYL 380
[44][TOP]
>UniRef100_B5YES0 RNA polymerase sigma factor n=1 Tax=Dictyoglomus thermophilum
H-6-12 RepID=B5YES0_DICT6
Length = 413
Score = 58.9 bits (141), Expect = 2e-07
Identities = 41/129 (31%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVD---EWTLKDE 173
+++R TE + ++ + +E SL G+ +AD +EN D + +LK +
Sbjct: 286 EEIRQQTEKVREISMMGQEPL-SLEMPVGEDEDNRLADF-VENKDLSPADIAVQKSLKKD 343
Query: 174 VNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
+ +L+N L EREREI++L +GL D + T E++ K ++RER+RQ+ AL +L+H +
Sbjct: 344 IEELLN-ELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRRLRHPS 402
Query: 351 RKREMEAML 377
R ++++ L
Sbjct: 403 RSKKIKDYL 411
[45][TOP]
>UniRef100_A9WGV1 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WGV1_CHLAA
Length = 381
Score = 58.9 bits (141), Expect = 2e-07
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR EA SL+ G GD +I D+R+ P L++++ ++
Sbjct: 262 KVRRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRIST-PAEAAAASLLREQLEEV 316
Query: 186 INVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
+ + L ERER+II+L YGL D T E++ G++RER+RQ+ VAL KL+H ++
Sbjct: 317 L-MKLPERERKIIQLRYGLKDGRYRTLEEVGIEFGITRERIRQIEAVALRKLRHPHLGKK 375
Query: 363 MEAML 377
+ L
Sbjct: 376 LRGYL 380
[46][TOP]
>UniRef100_A9B077 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B077_HERA2
Length = 386
Score = 58.9 bits (141), Expect = 2e-07
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR EA SL+ G GD +I D+R+ P L++++ ++
Sbjct: 267 KVRRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRVST-PVDAAAMTMLREQIEEV 321
Query: 186 INVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
+ L ERER+II+L YGL D T E++ G++RER+RQ+ VAL KL+H ++
Sbjct: 322 LQ-KLPERERKIIQLRYGLKDGRYRTLEEVGLEFGITRERIRQIEAVALRKLRHPHLGKK 380
Query: 363 MEAML 377
+ L
Sbjct: 381 LRGYL 385
[47][TOP]
>UniRef100_P77840 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
RepID=P77840_CHLAU
Length = 343
Score = 58.9 bits (141), Expect = 2e-07
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR EA SL+ G GD +I D+R+ P L++++ ++
Sbjct: 224 KVRRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRIST-PAEAPAASLLREQLEEV 278
Query: 186 INVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
+ + L ERER+II+L YGL D T E++ G++RER+RQ+ VAL KL+H ++
Sbjct: 279 L-MKLPERERKIIQLRYGLKDGRYRTLEEVGIEFGITRERIRQIEAVALRKLRHPHLGKK 337
Query: 363 MEAM 374
+ A+
Sbjct: 338 LRAI 341
[48][TOP]
>UniRef100_C4DZ35 RNA polymerase sigma factor n=1 Tax=Streptobacillus moniliformis
DSM 12112 RepID=C4DZ35_9FUSO
Length = 379
Score = 58.9 bits (141), Expect = 2e-07
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KV+N E SL+ + GD ++ D++ N P LK+++N
Sbjct: 258 EKVKNILEMNQDPISLETPVGSEDDSELGD----FVEDDKFLN-PHEATVRSVLKEKLND 312
Query: 183 LINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
++ L ERE +++RL YGLD T E++ K ++RER+RQ+ + A+ KLK+ +K+
Sbjct: 313 VLRKELNEREEQVLRLRYGLDDGAPKTLEEVGKIFDVTRERIRQIEVKAINKLKNIKKKK 372
Query: 360 EME 368
+E
Sbjct: 373 GLE 375
[49][TOP]
>UniRef100_Q11U62 RNA polymerase sigma-70 factor n=1 Tax=Cytophaga hutchinsonii ATCC
33406 RepID=Q11U62_CYTH3
Length = 287
Score = 58.5 bits (140), Expect = 3e-07
Identities = 31/91 (34%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +3
Query: 108 IADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKE-CLTWEDISKRI 284
+ +N E+ P + +L+ EV + ++ TL +RE ++I LY+GL+ E +T E+I ++
Sbjct: 197 VLENSSESAPDSSLMNDSLRREVQRALS-TLTQREADVISLYFGLNGEHSMTLEEIGEKF 255
Query: 285 GLSRERVRQVGLVALEKLKHAARKREMEAML 377
L+RERVRQ+ A+ +L+H +R + ++ L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKALKPYL 286
[50][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
Length = 372
Score = 58.5 bits (140), Expect = 3e-07
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVR A + + SL+ + GD +I D + H E LKD++ +
Sbjct: 252 KKVREALKVAQEPVSLETPIGEEDDSHLGD----FIEDKDATSPEQHAASEM-LKDQLAE 306
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ + G++RER+RQ+ AL KL+H +R
Sbjct: 307 VLD-TLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSN 365
Query: 360 EMEAML 377
++ L
Sbjct: 366 KLRDFL 371
[51][TOP]
>UniRef100_B1ZU80 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1
RepID=B1ZU80_OPITP
Length = 353
Score = 58.5 bits (140), Expect = 3e-07
Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Frame = +3
Query: 135 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQ 311
P+ G+ E L +++ ++ +L ERE EIIRL +GLD K+ LT E++ +R ++RER+RQ
Sbjct: 240 PFEGLREKNLNSDLHAMV-ASLDEREAEIIRLRFGLDGKDELTLEEVGRRFHVTRERIRQ 298
Query: 312 VGLVALEKLKHAARKRE 362
+ +AL K++ A K E
Sbjct: 299 LEYLALSKMRKAMAKHE 315
[52][TOP]
>UniRef100_B9XH89 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514
RepID=B9XH89_9BACT
Length = 614
Score = 58.5 bits (140), Expect = 3e-07
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKR 281
+I D EN P LKD++N ++ TL ERER I+ L +GL D T E++ K+
Sbjct: 519 FIEDKSAEN-PSDMTSYSLLKDKLNDVL-ATLTERERRIVELRFGLVDGYARTLEEVGKQ 576
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREMEAML 377
++RER+RQ+ AL KL+H R R ++ L
Sbjct: 577 YKVTRERIRQIEAKALRKLRHPTRVRHLKGFL 608
[53][TOP]
>UniRef100_UPI0001984805 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984805
Length = 426
Score = 58.2 bits (139), Expect = 3e-07
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = +3
Query: 126 ENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRER 302
E P V +K EV + +N TL ERE I+RLY+G++ E L++E+I + + LSRER
Sbjct: 342 ETTPQKMVKRQLMKQEVERALN-TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRER 400
Query: 303 VRQVGLVALEKLKHAA 350
VRQ+ +AL KL+ +
Sbjct: 401 VRQINSIALSKLRQTS 416
[54][TOP]
>UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai
DSM 15897 RepID=UPI000196B4EB
Length = 418
Score = 58.2 bits (139), Expect = 3e-07
Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LKDE+N+++ + L +RE +++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 345 LKDELNEVL-LELTDREEKVLRLRFGLDDGRTRTLEEVGKEFNVTRERIRQIEAKALRKL 403
Query: 339 KHAARKREMEAML 377
KH +R + ++ L
Sbjct: 404 KHPSRSKRLKDFL 416
[55][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NKZ2_GLOVI
Length = 350
Score = 58.2 bits (139), Expect = 3e-07
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +3
Query: 129 NIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERV 305
N P HGV + ++ L+ TL RER+++RL YGL D T +++ ++ GL+RER+
Sbjct: 262 NEPEHGVVRDLMNQDLESLLQ-TLTPRERDVLRLRYGLIDGRSRTLDEVGQQFGLTRERI 320
Query: 306 RQVGLVALEKLKHAARKREMEAML 377
RQ+ AL KL+H R + + L
Sbjct: 321 RQIEARALRKLRHPQRLQRVREYL 344
[56][TOP]
>UniRef100_C1A7K2 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27
RepID=C1A7K2_GEMAT
Length = 286
Score = 58.2 bits (139), Expect = 3e-07
Identities = 27/61 (44%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +3
Query: 198 LVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAM 374
L ERE +I+RLY+G+D + +T E+I ++G++RERVRQ+ AL +L+H +R + +E+
Sbjct: 225 LKEREAKILRLYFGIDGADPMTLEEIGSQLGITRERVRQIKEKALSRLRHVSRSKSLESF 284
Query: 375 L 377
L
Sbjct: 285 L 285
[57][TOP]
>UniRef100_C0QT73 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
RepID=C0QT73_PERMH
Length = 281
Score = 58.2 bits (139), Expect = 3e-07
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKV+NA + + +SLD+ L T ++ E++ V+E +L E+N
Sbjct: 160 KKVKNALQVVRMPYSLDKPLGEEGEDL---TLLDVLSKKGTEDVEKEIVEE-SLHKELNT 215
Query: 183 LINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
L+NV L ERER II +GL+ +E T ++ + +G+SRERVRQ+ AL+KL+ A KR
Sbjct: 216 LLNV-LDERERAIIEHRFGLNGEEPKTLTEVGEILGISRERVRQLEQRALKKLRALAMKR 274
Query: 360 EMEAML 377
++ L
Sbjct: 275 HLKDFL 280
[58][TOP]
>UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii
F0254 RepID=C9MZ09_9FUSO
Length = 392
Score = 58.2 bits (139), Expect = 3e-07
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KV++ E SL+ + GD ++ D++ N P+ LK+++++
Sbjct: 272 EKVKSILEMNQDPISLETPVGSEEDSELGD----FVEDDKFAN-PYDATTRVLLKEQLDE 326
Query: 183 LINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
++ TL ERE ++R YGLD T E++ K ++RER+RQ+ + AL KL+H +R++
Sbjct: 327 VLK-TLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRRK 385
Query: 360 EME 368
++E
Sbjct: 386 KLE 388
[59][TOP]
>UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD
Length = 392
Score = 58.2 bits (139), Expect = 3e-07
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KV++ E SL+ + GD ++ D++ N P+ LK+++++
Sbjct: 272 EKVKSILEMNQDPISLETPVGSEEDSELGD----FVEDDKFAN-PYDATTRILLKEQLDE 326
Query: 183 LINVTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
++ TL ERE ++R YGLD T E++ K ++RER+RQ+ + AL KL+H +R++
Sbjct: 327 VLK-TLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRRK 385
Query: 360 EME 368
++E
Sbjct: 386 KLE 388
[60][TOP]
>UniRef100_B1C3P6 RNA polymerase sigma factor n=1 Tax=Clostridium spiroforme DSM 1552
RepID=B1C3P6_9FIRM
Length = 415
Score = 58.2 bits (139), Expect = 3e-07
Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LKDE+N+++ + L +RE +++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 342 LKDELNEVL-LELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKALRKL 400
Query: 339 KHAARKREMEAML 377
KH +R + ++ L
Sbjct: 401 KHPSRSKRLKDFL 413
[61][TOP]
>UniRef100_B0N3Z8 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B0N3Z8_9FIRM
Length = 417
Score = 58.2 bits (139), Expect = 3e-07
Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LKDE+N+++ + L +RE +++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 344 LKDELNEVL-LELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKALRKL 402
Query: 339 KHAARKREMEAML 377
KH +R + ++ L
Sbjct: 403 KHPSRSKRLKDFL 415
[62][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 58.2 bits (139), Expect = 3e-07
Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D+ + +P + LK++++++++ TL ERE++++RL +G+D T E++ K
Sbjct: 292 FIQDDNVP-VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMDDGRARTLEEVGKE 349
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREMEAML 377
++RER+RQ+ AL KL+H +R R++ L
Sbjct: 350 FDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 381
[63][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7AZ88_RUMGN
Length = 371
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/129 (27%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGVDEWTLKDE 173
K++ E + ++ + +E SL G+ ++ D ++ +P + LK++
Sbjct: 244 KELDMPVERVREILKISQEPV-SLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQ 302
Query: 174 VNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
++++++ TL ERE++++RL +G+ D T E++ K ++RER+RQ+ AL KL+H +
Sbjct: 303 LDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPS 361
Query: 351 RKREMEAML 377
R R++ L
Sbjct: 362 RSRKLRDYL 370
[64][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KQA4_9FIRM
Length = 383
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/129 (27%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGVDEWTLKDE 173
K++ E + ++ + +E SL G+ ++ D ++ +P + LK++
Sbjct: 256 KELDMPVERVREILKISQEPV-SLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQ 314
Query: 174 VNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
++++++ TL ERE++++RL +G+ D T E++ K ++RER+RQ+ AL KL+H +
Sbjct: 315 LDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPS 373
Query: 351 RKREMEAML 377
R R++ L
Sbjct: 374 RSRKLRDYL 382
[65][TOP]
>UniRef100_A5KKN8 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KKN8_9FIRM
Length = 273
Score = 58.2 bits (139), Expect = 3e-07
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
++V+N I SL+ G G+ ++R E P +D K+EV +
Sbjct: 162 EEVKNILSYIRNPVSLETPV-----GEDGEDSLGDFVEDRSETTPEDAMDVLVRKEEVQE 216
Query: 183 LINVTLVEREREIIRLYYGLDKE-CLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
L+ TL +RE+E+I L +GL K+ T E+I + +G++RERVRQ+ A+EKL+ A
Sbjct: 217 LLE-TLNDREKEVISLRFGLGKDRTYTLEEIGESLGITRERVRQIESKAMEKLRKKA 272
[66][TOP]
>UniRef100_A3HT44 RNA polymerase sigma factor rpoD (Sigma-A) n=1 Tax=Algoriphagus sp.
PR1 RepID=A3HT44_9SPHI
Length = 287
Score = 58.2 bits (139), Expect = 3e-07
Identities = 31/91 (34%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +3
Query: 108 IADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKE-CLTWEDISKRI 284
+ +N + P G+ +L+ EV + ++ TL +RE ++I LY+GL+ E +T E+I ++
Sbjct: 197 VLENDGDEKPDDGLMNDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKF 255
Query: 285 GLSRERVRQVGLVALEKLKHAARKREMEAML 377
L+RERVRQ+ A+ +L+H +R + ++ L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKTLKPYL 286
[67][TOP]
>UniRef100_A7Q231 Chromosome chr13 scaffold_45, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q231_VITVI
Length = 352
Score = 58.2 bits (139), Expect = 3e-07
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = +3
Query: 126 ENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRER 302
E P V +K EV + +N TL ERE I+RLY+G++ E L++E+I + + LSRER
Sbjct: 268 ETTPQKMVKRQLMKQEVERALN-TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRER 326
Query: 303 VRQVGLVALEKLKHAA 350
VRQ+ +AL KL+ +
Sbjct: 327 VRQINSIALSKLRQTS 342
[68][TOP]
>UniRef100_Q6AK94 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila
RepID=Q6AK94_DESPS
Length = 447
Score = 57.8 bits (138), Expect = 4e-07
Identities = 31/86 (36%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +3
Query: 114 DNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGL 290
+N+ P+ V L V ++++ TL +RE +IIRL +G+ +K T E+I KR +
Sbjct: 359 ENQESQSPYEAVQNRELSGRVTEILS-TLSDREEKIIRLRFGIGEKAEYTLEEIGKRFNV 417
Query: 291 SRERVRQVGLVALEKLKHAARKREME 368
SRER+RQ+ AL +L+H++R+ +++
Sbjct: 418 SRERIRQIEKKALNRLRHSSRRDKLK 443
[69][TOP]
>UniRef100_B8E0E4 RNA polymerase sigma factor n=1 Tax=Dictyoglomus turgidum DSM 6724
RepID=B8E0E4_DICTD
Length = 413
Score = 57.8 bits (138), Expect = 4e-07
Identities = 40/129 (31%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVD---EWTLKDE 173
++++ TE + ++ + +E SL G+ +AD +EN D + +LK +
Sbjct: 286 EEIKQQTEKVREISMMGQEPL-SLEMPVGEDEDNRLADF-VENKDLSPADIAVQKSLKKD 343
Query: 174 VNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
+ +L+N L EREREI++L +GL D + T E++ K ++RER+RQ+ AL +L+H +
Sbjct: 344 IEELLN-ELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRRLRHPS 402
Query: 351 RKREMEAML 377
R ++++ L
Sbjct: 403 RSKKIKDYL 411
[70][TOP]
>UniRef100_C9M9L0 RNA polymerase major sigma factor n=1 Tax=Jonquetella anthropi E3_33
E1 RepID=C9M9L0_9BACT
Length = 969
Score = 57.8 bits (138), Expect = 4e-07
Identities = 27/73 (36%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
L++++ +++N L +RERE++R +GL D T E++ +R G++RER+RQ+ AL KL
Sbjct: 897 LQEQIEEMLNA-LSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKALRKL 955
Query: 339 KHAARKREMEAML 377
+H +R +++ L
Sbjct: 956 RHPSRSKKLRDFL 968
[71][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 57.8 bits (138), Expect = 4e-07
Identities = 28/73 (38%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ ++++ TL ERE ++RL +GLD T E++ + G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEEVLD-TLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKL 361
Query: 339 KHAARKREMEAML 377
+H +R R+++ L
Sbjct: 362 RHPSRSRKLKDFL 374
[72][TOP]
>UniRef100_C1TLL9 RNA polymerase sigma factor n=1 Tax=Dethiosulfovibrio peptidovorans
DSM 11002 RepID=C1TLL9_9BACT
Length = 381
Score = 57.8 bits (138), Expect = 4e-07
Identities = 26/65 (40%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
L+D+++ ++ L +RE++++RL +G D +C T ED+ +R G++RER+RQ+ AL KL
Sbjct: 309 LRDQLDDVLE-GLTDREKQVLRLRFGFDDGQCYTLEDVGRRFGVTRERIRQIEAKALRKL 367
Query: 339 KHAAR 353
+H +R
Sbjct: 368 RHPSR 372
[73][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
RepID=C0C397_9CLOT
Length = 370
Score = 57.8 bits (138), Expect = 4e-07
Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKR 281
+I D+ + +P + LK++++++++ TL ERE++++RL +G+ D T E++ K
Sbjct: 280 FIQDDNVP-VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKE 337
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREMEAML 377
++RER+RQ+ AL KL+H +R R++ L
Sbjct: 338 FDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 369
[74][TOP]
>UniRef100_C0BBA6 RNA polymerase sigma factor n=1 Tax=Coprococcus comes ATCC 27758
RepID=C0BBA6_9FIRM
Length = 371
Score = 57.8 bits (138), Expect = 4e-07
Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKR 281
+I D+ + +P + LK++++++++ TL ERE++++RL +G+ D T E++ K
Sbjct: 281 FIQDDNVP-VPAEAAAQTLLKEQLDEVLS-TLTEREQKVLRLRFGMSDGRARTLEEVGKE 338
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREMEAML 377
++RER+RQ+ AL KL+H +R R++ L
Sbjct: 339 FDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 370
[75][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
RepID=B0P3M7_9CLOT
Length = 363
Score = 57.8 bits (138), Expect = 4e-07
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++++++ TL ERE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 291 LKEQLDEVLG-TLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKALRKL 349
Query: 339 KHAARKREMEAML 377
+H +R R+++ L
Sbjct: 350 RHPSRSRKLKDYL 362
[76][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
RepID=B0NBC7_EUBSP
Length = 371
Score = 57.8 bits (138), Expect = 4e-07
Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKR 281
+I D+ + +P + LK++++++++ TL ERE++++RL +G+ D T E++ K
Sbjct: 281 FIQDDNVP-VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKE 338
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREMEAML 377
++RER+RQ+ AL KL+H +R R++ L
Sbjct: 339 FDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 370
[77][TOP]
>UniRef100_B0ME78 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662
RepID=B0ME78_9FIRM
Length = 370
Score = 57.8 bits (138), Expect = 4e-07
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++++++ TL ERE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 298 LKEQLSEVLG-TLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKALRKL 356
Query: 339 KHAARKREMEAML 377
+H +R R+++ L
Sbjct: 357 RHPSRSRKLKDYL 369
[78][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
RepID=A6BEL2_9FIRM
Length = 369
Score = 57.8 bits (138), Expect = 4e-07
Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKR 281
+I D+ + +P + LK++++++++ TL ERE++++RL +G+ D T E++ K
Sbjct: 279 FIQDDNVP-VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKE 336
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREMEAML 377
++RER+RQ+ AL KL+H +R R++ L
Sbjct: 337 FDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 368
[79][TOP]
>UniRef100_Q1G9X1 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842 RepID=Q1G9X1_LACDA
Length = 372
Score = 57.4 bits (137), Expect = 6e-07
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVR A + + SL+ + GD +I D + H E L+D++ +
Sbjct: 252 KKVREALKVAQEPVSLETPIGEEDDSHLGD----FIEDKDTTSPEQHAASEM-LRDQLAE 306
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ + G++RER+RQ+ AL KL+H +R
Sbjct: 307 VLD-TLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSN 365
Query: 360 EMEAML 377
++ L
Sbjct: 366 KLRDFL 371
[80][TOP]
>UniRef100_C1A5Y4 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27
RepID=C1A5Y4_GEMAT
Length = 302
Score = 57.4 bits (137), Expect = 6e-07
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLD-------REAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 161
++VRNA + S SLD REA G+TH AD +E+ G D
Sbjct: 176 EQVRNARQISSTEVSLDAPIDRQDREASTLGERFAGETH----AD--IED----GTDFRL 225
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQVGLVALEK 335
+++ ++++ L RER+I+ LYYGLD+ E +T E I +G++RER+RQ+ A EK
Sbjct: 226 MREFIDRVFRKYLTPRERKILYLYYGLDEGAEAMTLERIGALMGVTRERIRQIRERAFEK 285
Query: 336 LKHAARKREM 365
L+ + R +
Sbjct: 286 LRESPDGRAL 295
[81][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
delbrueckii subsp. lactis RepID=Q71HU9_LACDL
Length = 167
Score = 57.4 bits (137), Expect = 6e-07
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVR + + SL+ + GD +I D + H E LKD++ +
Sbjct: 47 KKVREVLKVAQEPVSLETPIGEEDDSHLGD----FIEDKDATSPEQHAASEM-LKDQLAE 101
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ + G++RER+RQ+ AL KL+H +R
Sbjct: 102 VLD-TLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSN 160
Query: 360 EMEAML 377
++ L
Sbjct: 161 QLRDFL 166
[82][TOP]
>UniRef100_C6JI10 RNA polymerase sigma factor n=1 Tax=Fusobacterium varium ATCC 27725
RepID=C6JI10_FUSVA
Length = 414
Score = 57.4 bits (137), Expect = 6e-07
Identities = 30/89 (33%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKR 281
++ D+++ N P+ + L++++N ++N TL RE ++R YGLD T E++ K
Sbjct: 324 FVEDHKMLN-PYELTNRSLLREQLNGVLN-TLSSREERVLRYRYGLDDGSPKTLEEVGKI 381
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREME 368
++RER+RQ+ + AL KL+H +R++++E
Sbjct: 382 FKVTRERIRQIEVKALRKLRHPSRRKKLE 410
[83][TOP]
>UniRef100_B9YB48 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042
RepID=B9YB48_9FIRM
Length = 408
Score = 57.4 bits (137), Expect = 6e-07
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LKDE+N ++ L ERE +++RL +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 334 LKDEINNVLQ-GLTEREEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIRQIEAKALRKL 392
Query: 339 KHAARKREMEAMLLKH 386
KH R + + + K+
Sbjct: 393 KHPTRSKRLRDFVDKN 408
[84][TOP]
>UniRef100_UPI000185CB93 RNA polymerase sigma factor RpoD n=1 Tax=Capnocytophaga sputigena
ATCC 33612 RepID=UPI000185CB93
Length = 287
Score = 57.0 bits (136), Expect = 7e-07
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 335
+L+ E+ + + TL RE ++IRLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVIRLYFGLGDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 336 LKHAARKREMEAML 377
LKH +R + ++ L
Sbjct: 273 LKHTSRSKILKTYL 286
[85][TOP]
>UniRef100_C5CDI4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1
RepID=C5CDI4_KOSOT
Length = 405
Score = 57.0 bits (136), Expect = 7e-07
Identities = 33/122 (27%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGD---THHCYIADNRLENIPWHGVDEWTLKDEVNKLINV 194
E I ++ + +E + + GD T ++ D +E P + L+++++++++
Sbjct: 277 EKIEEILAASKETVSLESPISGDEESTMGDFVHDESIEK-PEEAAIKMLLREQIDEVLD- 334
Query: 195 TLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
TL RE ++++ YGL D + T E++ + ++RER+RQ+ + AL KL+H +R ++++A
Sbjct: 335 TLSPREAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKA 394
Query: 372 ML 377
+L
Sbjct: 395 LL 396
[86][TOP]
>UniRef100_A7HK63 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum
Rt17-B1 RepID=A7HK63_FERNB
Length = 372
Score = 57.0 bits (136), Expect = 7e-07
Identities = 35/124 (28%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
K+ +A + SL+ + GD +IAD + + P +++E++KL
Sbjct: 248 KIEEILQAAPETLSLETPVNEEDDSSMGD----FIADESIGS-PKKEAIRTLMREEIDKL 302
Query: 186 INVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
+ TL +RE++++++ YGL + + +T E++ + G++RER+RQ+ + AL KL+H +R R
Sbjct: 303 LE-TLNDREKKVLKMRYGLYNGKPMTLEEVGQFFGVTRERIRQIEVKALRKLRHPSRSRY 361
Query: 363 MEAM 374
+ +
Sbjct: 362 LRLL 365
[87][TOP]
>UniRef100_Q1NXM5 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1
RepID=Q1NXM5_9DELT
Length = 442
Score = 57.0 bits (136), Expect = 7e-07
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGDTHHCY--IADNRLENIPWHGVDEWTLKDEVNKLINVT 197
E I +F RE SL GD +N+ P+ V L + V +++ T
Sbjct: 323 EKILAIFEASREPI-SLETPVGDDDSTLGDFLENQESISPYEAVKGNQLAERVTTILS-T 380
Query: 198 LVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAM 374
L RE +IIRL +G+ ++ T E+I KR +SRER+RQ+ AL +L+H++R+ +++
Sbjct: 381 LSPREEKIIRLRFGIGEDAEYTLEEIGKRFNVSRERIRQIEKKALNRLRHSSRREKLKNF 440
Query: 375 L 377
L
Sbjct: 441 L 441
[88][TOP]
>UniRef100_C8R003 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R003_9DELT
Length = 445
Score = 57.0 bits (136), Expect = 7e-07
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGDTHHCY--IADNRLENIPWHGVDEWTLKDEVNKLINVT 197
E I +F RE SL GD +N+ P+ V L + V +++ T
Sbjct: 326 EKILAIFEASREPI-SLETPVGDDDSTLGDFLENQESVSPYEAVKGNQLAERVTTILS-T 383
Query: 198 LVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAM 374
L RE +IIRL +G+ ++ T E+I KR +SRER+RQ+ AL +L+H++R+ +++
Sbjct: 384 LSPREEKIIRLRFGIGEDAEYTLEEIGKRFNVSRERIRQIEKKALNRLRHSSRREKLKNF 443
Query: 375 L 377
L
Sbjct: 444 L 444
[89][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
25644 RepID=C2E8V2_9LACO
Length = 373
Score = 57.0 bits (136), Expect = 7e-07
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLIN 191
TE + ++ + +E + + G D+H +I D+ + H E LK+++ +++
Sbjct: 252 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHAATSPADHAAYE-LLKEQIESVLD 310
Query: 192 VTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREME 368
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 311 -TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 369
Query: 369 AML 377
L
Sbjct: 370 DFL 372
[90][TOP]
>UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CM66_9FIRM
Length = 372
Score = 57.0 bits (136), Expect = 7e-07
Identities = 34/129 (26%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGVDEWTLKDE 173
K++ E + ++ + +E SL G+ ++ D ++ +P + LK++
Sbjct: 245 KEMDMPVERVREILKISQEPV-SLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQ 303
Query: 174 VNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
++++++ TL ERE++++RL +G+ D T E++ + ++RER+RQ+ AL KL+H +
Sbjct: 304 LDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQIEAKALRKLRHPS 362
Query: 351 RKREMEAML 377
R R++ L
Sbjct: 363 RSRKLRDYL 371
[91][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 57.0 bits (136), Expect = 7e-07
Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Frame = +3
Query: 18 ATEAISKVFSLDRE--AFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 188
A E + ++ + +E + + G GD+H +I D + H E LK+++ ++
Sbjct: 251 APEKVREILKIAQEPVSLETPIGEEGDSHLGDFIEDQEATSPADHAAYE-LLKEQLEDVL 309
Query: 189 NVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 365
+ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R + +
Sbjct: 310 D-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRL 368
Query: 366 EAML 377
+ L
Sbjct: 369 KDFL 372
[92][TOP]
>UniRef100_A8RBC2 RNA polymerase sigma factor n=1 Tax=Eubacterium dolichum DSM 3991
RepID=A8RBC2_9FIRM
Length = 398
Score = 57.0 bits (136), Expect = 7e-07
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LKDE+N ++ L ERE +++RL +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 324 LKDEINTVLQ-GLTEREEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIRQIEAKALRKL 382
Query: 339 KHAARKREME 368
KH R + ++
Sbjct: 383 KHPTRSKRLK 392
[93][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 57.0 bits (136), Expect = 7e-07
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D+ ++ H E LK+++
Sbjct: 255 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDSEAQSPSDHAAYE-LLKEQLED 309
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+I+ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 310 VID-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 368
Query: 360 EMEAML 377
++ L
Sbjct: 369 RLKDFL 374
[94][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 56.6 bits (135), Expect = 1e-06
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D+ ++ H E LK+++
Sbjct: 217 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDSEAQSPSEHAAYE-LLKEQLED 271
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 272 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 330
Query: 360 EMEAML 377
++ L
Sbjct: 331 RLKDFL 336
[95][TOP]
>UniRef100_C7M639 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M639_CAPOD
Length = 287
Score = 56.6 bits (135), Expect = 1e-06
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 335
+L+ E+ + + TL RE +++RLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVVRLYFGLSDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 336 LKHAARKREMEAML 377
LKH +R + ++ L
Sbjct: 273 LKHTSRSKILKTYL 286
[96][TOP]
>UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM
14600 RepID=C4G971_9FIRM
Length = 614
Score = 56.6 bits (135), Expect = 1e-06
Identities = 29/73 (39%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++N++++ TL ERER+++ L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 542 LKEQLNEVLD-TLTERERKVLILRFGLEDGRGRTLEEVGKEFNVTRERIRQIEAKALRKL 600
Query: 339 KHAARKREMEAML 377
+H +R R+++ L
Sbjct: 601 RHPSRSRKLKDYL 613
[97][TOP]
>UniRef100_C2FTX8 RNA polymerase sigma-70 factor n=2 Tax=Sphingobacterium
spiritivorum RepID=C2FTX8_9SPHI
Length = 286
Score = 56.6 bits (135), Expect = 1e-06
Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 147 VDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLV 323
+DE +L +E+ + + TL EREREII L++GL L+ E+I ++ L+RERVRQ+
Sbjct: 210 IDE-SLSEEIKRSL-ATLTEREREIIVLFFGLGSNHQLSLEEIGEKFNLTRERVRQIKDK 267
Query: 324 ALEKLKHAARKREMEAML 377
AL++L+H +R + +++ L
Sbjct: 268 ALQRLRHTSRSKILKSYL 285
[98][TOP]
>UniRef100_C0ET20 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
RepID=C0ET20_9FIRM
Length = 367
Score = 56.6 bits (135), Expect = 1e-06
Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+E+ + + +L ERER +I+L +GLD + T E++ K ++RER+RQ+ AL KL
Sbjct: 295 LKEELEEAM-ASLTERERNVIKLRFGLDDGKTRTLEEVGKEFNVTRERIRQIEAKALRKL 353
Query: 339 KHAARKREMEAML 377
+H +R R+++ L
Sbjct: 354 RHPSRSRKLKDFL 366
[99][TOP]
>UniRef100_C0BG96 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Flavobacteria
bacterium MS024-2A RepID=C0BG96_9BACT
Length = 287
Score = 56.6 bits (135), Expect = 1e-06
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 335
+L+ E+ + + TL RE +++RLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVVRLYFGLGDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 336 LKHAARKREMEAML 377
LKH +R + ++ L
Sbjct: 273 LKHTSRSKILKTYL 286
[100][TOP]
>UniRef100_B0N062 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
17216 RepID=B0N062_9BACT
Length = 286
Score = 56.6 bits (135), Expect = 1e-06
Identities = 28/78 (35%), Positives = 53/78 (67%)
Frame = +3
Query: 144 GVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 323
G+ +L EV++ + TL ERER+II+ ++G+ +T E+I ++ L+RERVRQ+
Sbjct: 209 GLINESLSTEVDRALE-TLTERERDIIKYFFGIGCSEMTLEEIGEKFDLTRERVRQIKEK 267
Query: 324 ALEKLKHAARKREMEAML 377
A+ +L+H++R + +++ L
Sbjct: 268 AIRRLRHSSRSKLLKSYL 285
[101][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
RepID=A8U8N7_9LACT
Length = 373
Score = 56.6 bits (135), Expect = 1e-06
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD + A + EN + LK+++
Sbjct: 253 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPAENAAYE-----LLKEQLED 307
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T ED+ K G++RER+RQ+ AL KL+H +R +
Sbjct: 308 VLD-TLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKALRKLRHPSRSK 366
Query: 360 EMEAML 377
+++ L
Sbjct: 367 QLKDFL 372
[102][TOP]
>UniRef100_A6C4Z7 RNA polymerase sigma factor n=1 Tax=Planctomyces maris DSM 8797
RepID=A6C4Z7_9PLAN
Length = 561
Score = 56.6 bits (135), Expect = 1e-06
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Frame = +3
Query: 45 SLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREII 224
SLDR S + GD +I D+ ++ P + + LKD+++ ++ TL REREII
Sbjct: 431 SLDRPVGESEDSYFGD----FIEDSDSDS-PVNTASQEMLKDKIDHVLK-TLTYREREII 484
Query: 225 RLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAML 377
+L +GL D T E++ + ++RERVRQ+ A+ KL+H R ++++ +
Sbjct: 485 KLRFGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLQGFI 536
[103][TOP]
>UniRef100_A1ZP06 RpoD n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZP06_9SPHI
Length = 287
Score = 56.6 bits (135), Expect = 1e-06
Identities = 31/91 (34%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +3
Query: 108 IADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKE-CLTWEDISKRI 284
+ +N E P + +L+ EV + ++ TL +RE ++I LY+GL+ E +T E+I ++
Sbjct: 197 VLENESEVKPDSELMNDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKF 255
Query: 285 GLSRERVRQVGLVALEKLKHAARKREMEAML 377
L+RERVRQ+ A+ +L+H +R + ++ L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKALKPYL 286
[104][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 56.2 bits (134), Expect = 1e-06
Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDRE--AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEV 176
K++ +T+ + ++ + +E + + G D+H +++ P LK+++
Sbjct: 248 KEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQL 307
Query: 177 NKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 353
+++ TL ERE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 308 EDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 366
Query: 354 KREMEAML 377
+ ++ L
Sbjct: 367 SKRLKDFL 374
[105][TOP]
>UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
nucleatum RepID=Q8RE13_FUSNN
Length = 331
Score = 56.2 bits (134), Expect = 1e-06
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +3
Query: 135 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQ 311
P+ + L++E++ ++ TL RE +++R YGLD T E++ K ++RER+RQ
Sbjct: 249 PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 307
Query: 312 VGLVALEKLKHAARKREME 368
+ + AL KL+H +RK+++E
Sbjct: 308 IEVKALRKLRHPSRKKKLE 326
[106][TOP]
>UniRef100_Q896X6 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q896X6_CLOTE
Length = 282
Score = 56.2 bits (134), Expect = 1e-06
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL--DKECLTWEDISK 278
+I+D+R +P V E L D ++ +++ TL RE I+RL YGL D E T E+I +
Sbjct: 192 FISDDRY--LPEDKVTEQMLGDTLSNVLS-TLSPREERIVRLRYGLVGDGESRTLEEIGR 248
Query: 279 RIGLSRERVRQVGLVALEKLKHAARKREME 368
L+RER+RQ+ A+ KL+H R ++++
Sbjct: 249 EFNLTRERIRQIEARAIRKLRHPTRIKKLQ 278
[107][TOP]
>UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG
18311 RepID=Q5M3E3_STRT2
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREME 368
++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[108][TOP]
>UniRef100_Q03JL2 RNA polymerase sigma factor n=2 Tax=Streptococcus thermophilus
RepID=Q03JL2_STRTD
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREME 368
++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[109][TOP]
>UniRef100_B7ICM7 RNA polymerase sigma factor n=1 Tax=Thermosipho africanus TCF52B
RepID=B7ICM7_THEAB
Length = 371
Score = 56.2 bits (134), Expect = 1e-06
Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KV +A + SL+ + GD +IAD + + P +++EV+K
Sbjct: 246 EKVEEILQAAKETTSLEAPVGEDDDSTVGD----FIADETIAS-PKKEAMRMLIREEVDK 300
Query: 183 LINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
++ TL +RE+ ++++ YGL D + T E++ + ++RER+RQ+ + AL KL+H +R R
Sbjct: 301 VLE-TLNDREKLVLKMRYGLIDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSR 359
Query: 360 EMEAM 374
++ +
Sbjct: 360 YLKLL 364
[110][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D+ ++ H E LK+++
Sbjct: 255 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDSEAQSPSDHAAYE-LLKEQLED 309
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 310 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 368
Query: 360 EMEAML 377
++ L
Sbjct: 369 RLKDFL 374
[111][TOP]
>UniRef100_A9KRZ0 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KRZ0_CLOPH
Length = 371
Score = 56.2 bits (134), Expect = 1e-06
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SLD + GD +I D+ + P L+D+++K
Sbjct: 250 EKVREILKVSADPISLDTPIGEEDDSHLGD----FIKDDTIMG-PEDAASYAVLQDQISK 304
Query: 183 LINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
L++ TL ERE+ ++ L +GL D T E++ K ++RER+RQ+ AL KL+H +R R
Sbjct: 305 LLD-TLTEREQRVLILRFGLQDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRAR 363
Query: 360 EME 368
++
Sbjct: 364 MLK 366
[112][TOP]
>UniRef100_Q3D699 RNA polymerase sigma factor n=7 Tax=Streptococcus agalactiae
RepID=Q3D699_STRAG
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREME 368
++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[113][TOP]
>UniRef100_Q3CZ52 RNA polymerase sigma factor n=1 Tax=Streptococcus agalactiae H36B
RepID=Q3CZ52_STRAG
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREME 368
++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[114][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D+ ++ H E LK+++
Sbjct: 20 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDSEAQSPSDHAAYE-LLKEQLED 74
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 75 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 133
Query: 360 EMEAML 377
++ L
Sbjct: 134 RLKDFL 139
[115][TOP]
>UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33
RepID=D0BQ42_9FUSO
Length = 416
Score = 56.2 bits (134), Expect = 1e-06
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +3
Query: 135 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQ 311
P+ + L++E++ ++ TL RE +++R YGLD T E++ K ++RER+RQ
Sbjct: 334 PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 392
Query: 312 VGLVALEKLKHAARKREME 368
+ + AL KL+H +RK+++E
Sbjct: 393 IEVKALRKLRHPSRKKKLE 411
[116][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLIN 191
TE + ++ + +E + + G D+H +I D + H E LK+++ +++
Sbjct: 248 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYE-LLKEQLEDVLD 306
Query: 192 VTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREME 368
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 307 -TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 365
Query: 369 AML 377
L
Sbjct: 366 DFL 368
[117][TOP]
>UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2
RepID=C7XNV3_9FUSO
Length = 418
Score = 56.2 bits (134), Expect = 1e-06
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +3
Query: 135 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQ 311
P+ + L++E++ ++ TL RE +++R YGLD T E++ K ++RER+RQ
Sbjct: 336 PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 394
Query: 312 VGLVALEKLKHAARKREME 368
+ + AL KL+H +RK+++E
Sbjct: 395 IEVKALRKLRHPSRKKKLE 413
[118][TOP]
>UniRef100_C6IUR4 RNA polymerase sigma factor rpoD n=1 Tax=Bacteroides sp. 1_1_6
RepID=C6IUR4_9BACE
Length = 286
Score = 56.2 bits (134), Expect = 1e-06
Identities = 26/73 (35%), Positives = 53/73 (72%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
+L E+++ ++ TL ERE+EII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTEREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 339 KHAARKREMEAML 377
+ + R + +++ L
Sbjct: 273 RQSNRSKLLKSYL 285
[119][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
Frame = +3
Query: 18 ATEAISKVFSLDRE--AFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLI 188
ATE + + + +E + + G D+H +I DN + P LK+++ ++
Sbjct: 256 ATEKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVS-PADSAAYQMLKEQLESVL 314
Query: 189 NVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 365
+ TL +RE ++RL +GL D T E++ K G++RER+RQ+ AL KL+H +R +++
Sbjct: 315 D-TLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQL 373
Query: 366 EAML 377
L
Sbjct: 374 RDFL 377
[120][TOP]
>UniRef100_C4C6T9 RNA polymerase sigma factor n=1 Tax=Sebaldella termitidis ATCC
33386 RepID=C4C6T9_9FUSO
Length = 387
Score = 56.2 bits (134), Expect = 1e-06
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KV++ E SL+ + GD ++ D++ N P+ LK++++ +
Sbjct: 268 KVKSILEMNQDPISLETPVGSEEDSELGD----FVEDDKFLN-PYDATTRVLLKEQLDGV 322
Query: 186 INVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
+ TL ERE ++R YGLD T E++ K ++RER+RQ+ + AL KL+H +R+++
Sbjct: 323 LK-TLSEREEMVLRYRYGLDDGSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRRKK 381
Query: 363 ME 368
+E
Sbjct: 382 LE 383
[121][TOP]
>UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1
RepID=C3WX07_9FUSO
Length = 417
Score = 56.2 bits (134), Expect = 1e-06
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +3
Query: 135 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQ 311
P+ + L++E++ ++ TL RE +++R YGLD T E++ K ++RER+RQ
Sbjct: 335 PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 393
Query: 312 VGLVALEKLKHAARKREME 368
+ + AL KL+H +RK+++E
Sbjct: 394 IEVKALRKLRHPSRKKKLE 412
[122][TOP]
>UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium
RepID=C3WPP3_9FUSO
Length = 340
Score = 56.2 bits (134), Expect = 1e-06
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +3
Query: 135 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQ 311
P+ + L++E++ ++ TL RE +++R YGLD T E++ K ++RER+RQ
Sbjct: 258 PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 316
Query: 312 VGLVALEKLKHAARKREME 368
+ + AL KL+H +RK+++E
Sbjct: 317 IEVKALRKLRHPSRKKKLE 335
[123][TOP]
>UniRef100_C3WG18 RNA polymerase sigma factor n=1 Tax=Fusobacterium mortiferum ATCC
9817 RepID=C3WG18_FUSMR
Length = 351
Score = 56.2 bits (134), Expect = 1e-06
Identities = 29/89 (32%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKR 281
++ DN++ N P+ + L+++++ ++N +L RE +++R YGLD T E++ K
Sbjct: 261 FVEDNKMLN-PYELTNRSLLREQLDGVLN-SLSSREEKVLRYRYGLDDGSPKTLEEVGKI 318
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREME 368
++RER+RQ+ + AL KL+H +R++++E
Sbjct: 319 FKVTRERIRQIEVKALRKLRHPSRRKKLE 347
[124][TOP]
>UniRef100_C2LRD4 RNA polymerase sigma factor n=1 Tax=Streptococcus salivarius SK126
RepID=C2LRD4_STRSL
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREME 368
++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[125][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLIN 191
TE + ++ + +E + + G D+H +I D + H E LK+++ +++
Sbjct: 248 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYE-LLKEQLEDVLD 306
Query: 192 VTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREME 368
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 307 -TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 365
Query: 369 AML 377
L
Sbjct: 366 DFL 368
[126][TOP]
>UniRef100_B4D7Q1 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428
RepID=B4D7Q1_9BACT
Length = 296
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Frame = +3
Query: 135 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQ 311
P+ + + L+DEV L+ V L ERE++II +GLD + T E++ K+ G++RER+RQ
Sbjct: 201 PFERLRDKNLRDEVGDLLEV-LDEREKKIIFSRFGLDGGKAKTLEEVGKKFGVTRERIRQ 259
Query: 312 VGLVALEKLKHAARKRE 362
+ +AL KL+ A +K+E
Sbjct: 260 LQNIALMKLRRALQKKE 276
[127][TOP]
>UniRef100_C6Y2J2 RNA polymerase sigma factor, sigma-70 family n=2 Tax=Pedobacter
RepID=C6Y2J2_PEDHD
Length = 286
Score = 56.2 bits (134), Expect = 1e-06
Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEK 335
+L +E+ + ++ TL EREREII L++GL L+ E+I ++ L+RERVRQ+ AL++
Sbjct: 213 SLSEEIKRSLS-TLTEREREIIVLFFGLSTNHPLSLEEIGEKFNLTRERVRQIKDKALQR 271
Query: 336 LKHAARKREMEAML 377
L+H +R + +++ L
Sbjct: 272 LRHTSRSKILKSYL 285
[128][TOP]
>UniRef100_A5TTP9 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
polymorphum ATCC 10953 RepID=A5TTP9_FUSNP
Length = 418
Score = 56.2 bits (134), Expect = 1e-06
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +3
Query: 135 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQ 311
P+ + L++E++ ++ TL RE +++R YGLD T E++ K ++RER+RQ
Sbjct: 336 PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 394
Query: 312 VGLVALEKLKHAARKREME 368
+ + AL KL+H +RK+++E
Sbjct: 395 IEVKALRKLRHPSRKKKLE 413
[129][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 56.2 bits (134), Expect = 1e-06
Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ K++N TL RE +++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 306 LKEQLLKILN-TLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 364
Query: 339 KHAARKREMEAML 377
+H +R ++++ L
Sbjct: 365 RHPSRSKKLKDYL 377
[130][TOP]
>UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M18 RepID=Q8P1I9_STRP8
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R +++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQL 363
[131][TOP]
>UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M3 RepID=Q8K811_STRP3
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R +++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQL 363
[132][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 55.8 bits (133), Expect = 2e-06
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLIN 191
TE + ++ + +E + + G D+H +I D + H E LK+++ +++
Sbjct: 251 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYE-LLKEQLESVLD 309
Query: 192 VTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREME 368
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 310 -TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 368
Query: 369 AML 377
L
Sbjct: 369 DFL 371
[133][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D E+ P L++ ++ ++N TL ERE +++RL +GLD T E++ +
Sbjct: 268 FITDEEAES-PEESASFVLLREHLDGILN-TLTEREEKVLRLRFGLDDGRPRTLEEVGQE 325
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREME 368
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 326 FGVTRERIRQIEAKALRKLRHPSRSKKLK 354
[134][TOP]
>UniRef100_C5WFT4 RNA polymerase sigma factor n=1 Tax=Streptococcus dysgalactiae
subsp. equisimilis GGS_124 RepID=C5WFT4_STRDG
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R +++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQL 363
[135][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
RepID=C4Z4Y6_EUBE2
Length = 434
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D+ + +P LK+++ +++ TL ERE++++RL +G+D T E++ K
Sbjct: 344 FIQDDNVP-VPAEAAASTLLKEQLVEVLG-TLTEREQKVLRLRFGMDDGRARTLEEVGKE 401
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREMEAML 377
++RER+RQ+ AL KL+H +R R++ L
Sbjct: 402 FNVTRERIRQIEAKALRKLRHPSRSRKLRDYL 433
[136][TOP]
>UniRef100_C0MGY0 RNA polymerase sigma factor n=1 Tax=Steptococcus equi subsp.
zooepidemicus H70 RepID=C0MGY0_STRS7
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R +++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQL 363
[137][TOP]
>UniRef100_C0M883 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. equi
4047 RepID=C0M883_STRE4
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R +++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQL 363
[138][TOP]
>UniRef100_B9DRV6 RNA polymerase sigma factor n=1 Tax=Streptococcus uberis 0140J
RepID=B9DRV6_STRU0
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R +++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQL 363
[139][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D +++ H E LK+++
Sbjct: 249 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEVQSPSDHAAYE-LLKEQLED 303
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 304 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 362
Query: 360 EME 368
++
Sbjct: 363 RLK 365
[140][TOP]
>UniRef100_B4U2H7 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp.
zooepidemicus MGCS10565 RepID=B4U2H7_STREM
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R +++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQL 363
[141][TOP]
>UniRef100_A2RFA3 RNA polymerase sigma factor n=9 Tax=Streptococcus pyogenes
RepID=A2RFA3_STRPG
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R +++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQL 363
[142][TOP]
>UniRef100_A0LYB9 RNA polymerase sigma-70 factor n=1 Tax=Gramella forsetii KT0803
RepID=A0LYB9_GRAFK
Length = 287
Score = 55.8 bits (133), Expect = 2e-06
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 335
+L+ E+ + + TL RE ++IRLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVIRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 336 LKHAARKREMEAML 377
LKH +R + ++ L
Sbjct: 273 LKHTSRSKILKTYL 286
[143][TOP]
>UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583
RepID=C9L8C6_RUMHA
Length = 330
Score = 55.8 bits (133), Expect = 2e-06
Identities = 28/73 (38%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL ERE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 258 LKEQLVEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 316
Query: 339 KHAARKREMEAML 377
+H +R R+++ L
Sbjct: 317 RHPSRSRKLKDYL 329
[144][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 55.8 bits (133), Expect = 2e-06
Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINV 194
TE + ++ + +E + + G D+H +++ P LK+++ +++
Sbjct: 295 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLD- 353
Query: 195 TLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 354 TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKD 413
Query: 372 ML 377
L
Sbjct: 414 FL 415
[145][TOP]
>UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA
RepID=C6JGK6_9FIRM
Length = 375
Score = 55.8 bits (133), Expect = 2e-06
Identities = 35/129 (27%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGVDEWTLKDE 173
K++ + E + ++ + +E SL G+ ++ D ++ +P LK++
Sbjct: 248 KEMDMSVERVREILKISQEPV-SLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQ 306
Query: 174 VNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
+ ++++ TL +RE++++RL +GLD T E++ K ++RER+RQ+ AL KL+H +
Sbjct: 307 LVEVLS-TLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPS 365
Query: 351 RKREMEAML 377
R R+++ L
Sbjct: 366 RSRKLKDYL 374
[146][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 55.8 bits (133), Expect = 2e-06
Identities = 26/70 (37%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ ++++ TL ERE ++RL +G+D T E++ K G++RER+RQ+ AL KL
Sbjct: 253 LKEQLEEVLD-TLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKL 311
Query: 339 KHAARKREME 368
+H +R + ++
Sbjct: 312 RHPSRSKRLK 321
[147][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 55.8 bits (133), Expect = 2e-06
Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINV 194
TE + ++ + +E + + G D+H +++ P LK+++ +++
Sbjct: 231 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLD- 289
Query: 195 TLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 290 TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKD 349
Query: 372 ML 377
L
Sbjct: 350 FL 351
[148][TOP]
>UniRef100_C3WID8 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 2_1_31
RepID=C3WID8_9FUSO
Length = 269
Score = 55.8 bits (133), Expect = 2e-06
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +3
Query: 135 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQ 311
P+ + L++E++ ++ TL RE +++R YGLD T E++ K ++RER+RQ
Sbjct: 187 PYEATNRAILREELDGVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 245
Query: 312 VGLVALEKLKHAARKREME 368
+ + AL KL+H +RK+++E
Sbjct: 246 IEVKALRKLRHPSRKKKLE 264
[149][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 55.8 bits (133), Expect = 2e-06
Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINV 194
TE + ++ + +E + + G D+H +++ P LK+++ +++
Sbjct: 295 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLD- 353
Query: 195 TLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 354 TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKD 413
Query: 372 ML 377
L
Sbjct: 414 FL 415
[150][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 55.8 bits (133), Expect = 2e-06
Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINV 194
TE + ++ + +E + + G D+H +++ P LK+++ +++
Sbjct: 301 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLD- 359
Query: 195 TLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 360 TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKD 419
Query: 372 ML 377
L
Sbjct: 420 FL 421
[151][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 55.8 bits (133), Expect = 2e-06
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLIN 191
TE + ++ + +E + + G D+H +I D + H E LK+++ +++
Sbjct: 251 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYE-LLKEQLESVLD 309
Query: 192 VTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREME 368
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 310 -TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 368
Query: 369 AML 377
L
Sbjct: 369 DFL 371
[152][TOP]
>UniRef100_C0YS93 RNA polymerase sigma-70 factor n=2 Tax=Chryseobacterium
RepID=C0YS93_9FLAO
Length = 288
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/76 (39%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEK 335
+L+ E+ + +N TL RE +++RLY+GL+ K +T E+I + L+RERVRQ+ A+++
Sbjct: 214 SLQIEIERALN-TLTPREADLVRLYFGLNGKHPMTLEEIGETFDLTRERVRQIKEKAIKR 272
Query: 336 LKHAARKREMEAMLLK 383
LKH R + +++ L K
Sbjct: 273 LKHNTRSKILKSYLGK 288
[153][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 55.8 bits (133), Expect = 2e-06
Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINV 194
TE + ++ + +E + + G D+H +++ P LK+++ +++
Sbjct: 295 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLD- 353
Query: 195 TLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 354 TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKD 413
Query: 372 ML 377
L
Sbjct: 414 FL 415
[154][TOP]
>UniRef100_B1SG84 RNA polymerase sigma factor n=1 Tax=Streptococcus infantarius
subsp. infantarius ATCC BAA-102 RepID=B1SG84_9STRE
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R +++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQL 363
[155][TOP]
>UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174
RepID=A5ZYP8_9FIRM
Length = 330
Score = 55.8 bits (133), Expect = 2e-06
Identities = 28/73 (38%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL ERE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 258 LKEQLIEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 316
Query: 339 KHAARKREMEAML 377
+H +R R+++ L
Sbjct: 317 RHPSRSRKLKDYL 329
[156][TOP]
>UniRef100_A5P797 RNA polymerase sigma factor n=1 Tax=Erythrobacter sp. SD-21
RepID=A5P797_9SPHN
Length = 668
Score = 55.8 bits (133), Expect = 2e-06
Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD---NRLENIPWHGVDEWTLKDE 173
+K+ E + KV + +E SL GD ++ D ++ IP + LK+
Sbjct: 540 EKLSMPLEKVRKVMKIAKEPI-SLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKET 598
Query: 174 VNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
V +++ +L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +
Sbjct: 599 VTRVL-ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS 657
Query: 351 RKREMEAML 377
R R+M + L
Sbjct: 658 RSRKMRSFL 666
[157][TOP]
>UniRef100_A4CL98 Putative sigma factor A n=1 Tax=Robiginitalea biformata HTCC2501
RepID=A4CL98_9FLAO
Length = 287
Score = 55.8 bits (133), Expect = 2e-06
Identities = 28/74 (37%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 335
+L E+N+ + TL RE ++++LYYG+ D++ +T +I + L+RERVRQ+ A+ K
Sbjct: 214 SLNTEINRALE-TLSPREADVVKLYYGIGDQQSMTLAEIGQTFDLTRERVRQIREKAIRK 272
Query: 336 LKHAARKREMEAML 377
L+H +R + ++A L
Sbjct: 273 LRHHSRSKLLKAYL 286
[158][TOP]
>UniRef100_UPI000197B56E hypothetical protein BACCOPRO_00840 n=1 Tax=Bacteroides coprophilus
DSM 18228 RepID=UPI000197B56E
Length = 317
Score = 55.5 bits (132), Expect = 2e-06
Identities = 25/73 (34%), Positives = 53/73 (72%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
+L E+++ ++ TL ERE++II++++G++ + +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 245 SLSREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 303
Query: 339 KHAARKREMEAML 377
+ +R + +++ L
Sbjct: 304 RQNSRSKLLKSYL 316
[159][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL ERE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 339 KHAARKREMEAML 377
+H +R + ++ L
Sbjct: 364 RHPSRSKRLKDFL 376
[160][TOP]
>UniRef100_Q7NB90 RNA polymerase sigma factor n=1 Tax=Mycoplasma gallisepticum
RepID=Q7NB90_MYCGA
Length = 644
Score = 55.5 bits (132), Expect = 2e-06
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Frame = +3
Query: 150 DEWTLK----DEVNKLINVTLVEREREIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQ 311
DE+T K + +N+L TL ++E +IIR+ YGL + +T E++ ++ ++RER+RQ
Sbjct: 557 DEYTEKLIVTEHINELFINTLTKKEEQIIRMRYGLHPWHQQMTLEEVGQKFNVTRERIRQ 616
Query: 312 VGLVALEKLKHAARKREMEAMLLKH 386
+ AL KLKH ++ + + LKH
Sbjct: 617 IESKALRKLKHPSKNARLRS-FLKH 640
[161][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 55.5 bits (132), Expect = 2e-06
Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 297 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355
Query: 339 KHAARKREMEAML 377
+H +R ++++ L
Sbjct: 356 RHPSRSKQLKDFL 368
[162][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL ERE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 304 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 362
Query: 339 KHAARKREMEAML 377
+H +R + ++ L
Sbjct: 363 RHPSRSKRLKDFL 375
[163][TOP]
>UniRef100_B9L102 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L102_THERP
Length = 509
Score = 55.5 bits (132), Expect = 2e-06
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
L+++V L+ TL ERER ++ + +GL D + T E++ + G++RERVRQ+ AL KL
Sbjct: 437 LREQVQSLL-ATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKL 495
Query: 339 KHAARKREMEAML 377
+H R R + L
Sbjct: 496 RHPQRARALRDFL 508
[164][TOP]
>UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NGG2_ROSCS
Length = 405
Score = 55.5 bits (132), Expect = 2e-06
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR EA + SL+ P + + D +I D + P L+++++
Sbjct: 285 EKVRRVLEAARQTISLETPIGPEGDSVLAD----FIEDGKGAT-PMESASSHILREQIDS 339
Query: 183 LINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+ L ERER II+L YGL D T E++ + G++RER+RQ+ L KL+H R
Sbjct: 340 ALE-KLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGR 398
Query: 360 EMEAML 377
+ L
Sbjct: 399 GLRGYL 404
[165][TOP]
>UniRef100_A6LLT9 RNA polymerase sigma factor n=1 Tax=Thermosipho melanesiensis BI429
RepID=A6LLT9_THEM4
Length = 370
Score = 55.5 bits (132), Expect = 2e-06
Identities = 35/125 (28%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KV +A + SL+ + GD ++AD + + P +++EV K
Sbjct: 245 EKVEEILQAAKETTSLEAPVGEDEDSTVGD----FVADESIAS-PKKEAMRMLIREEVEK 299
Query: 183 LINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
++ TL +RE+ ++++ YGL D + T E++ + ++RER+RQ+ + AL KL+H +R R
Sbjct: 300 VLE-TLNDREKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSR 358
Query: 360 EMEAM 374
++ +
Sbjct: 359 YLKLL 363
[166][TOP]
>UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5V244_ROSS1
Length = 401
Score = 55.5 bits (132), Expect = 2e-06
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR EA + SL+ G GDT ++ P L+++++
Sbjct: 281 EKVRRVLEAARQTISLETPI-----GTEGDTVLADFIEDGKGVTPMDSASHHILREQIDS 335
Query: 183 LINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+ L ERER II+L YGL D T E++ + G++RER+RQ+ L KL+H R
Sbjct: 336 ALE-KLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGR 394
Query: 360 EMEAML 377
+ L
Sbjct: 395 GLRGYL 400
[167][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVRN + + SL+ + GD +I D + H E K N
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGD----FIEDQDATSPADHAAYEMMKKQLENV 315
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
L TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 316 LD--TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 373
Query: 360 EMEAML 377
+++ L
Sbjct: 374 QLKDFL 379
[168][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
KKVR+ + + SL+ + GD +I D+ + H E K N
Sbjct: 261 KKVRDILKIAQEPVSLETPIGEEDDSHLGD----FIEDHDATSPADHAAYEMMKKQLENV 316
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
L TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 317 LD--TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 374
Query: 360 EMEAML 377
+++ L
Sbjct: 375 QLKDFL 380
[169][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
RepID=C7CSZ1_ENTFA
Length = 368
Score = 55.5 bits (132), Expect = 2e-06
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLIN 191
TE + ++ + +E + + G D+H +I D + H E LK+++ +++
Sbjct: 247 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYE-LLKEQLEDVLD 305
Query: 192 VTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREME 368
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 306 -TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 364
Query: 369 AML 377
L
Sbjct: 365 DFL 367
[170][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL ERE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 302 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 360
Query: 339 KHAARKREMEAML 377
+H +R + ++ L
Sbjct: 361 RHPSRSKRLKDFL 373
[171][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 55.5 bits (132), Expect = 2e-06
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR+ + + SL+ G D+H +++ P LK+++ ++
Sbjct: 245 KVRDILKIAQEPVSLETPI-----GEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEV 299
Query: 186 INVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 300 LD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 358
Query: 363 MEAML 377
++ L
Sbjct: 359 LKDFL 363
[172][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V565_9FIRM
Length = 382
Score = 55.5 bits (132), Expect = 2e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++++++ TL RE E++RL +GL D T E++ + G++RER+RQ+ AL KL
Sbjct: 309 LKEQISEVLT-TLAPREAEVLRLRFGLVDGRSRTLEEVGQNFGVTRERIRQIEAKALRKL 367
Query: 339 KHAARKREME 368
+H R R+++
Sbjct: 368 RHPVRLRKLQ 377
[173][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVRN + + SL+ + GD +I D + H E K N
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGD----FIEDQDATSPADHAAYEMMKKQLENV 315
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
L TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 316 LD--TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 373
Query: 360 EMEAML 377
+++ L
Sbjct: 374 QLKDFL 379
[174][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVRN + + SL+ + GD +I D + H E K N
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGD----FIEDQDATSPADHAAYEMMKKQLENV 315
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
L TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 316 LD--TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 373
Query: 360 EMEAML 377
+++ L
Sbjct: 374 QLKDFL 379
[175][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C2E1K8_9LACO
Length = 364
Score = 55.5 bits (132), Expect = 2e-06
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR+ + + SL+ G D+H +++ P LK+++ ++
Sbjct: 245 KVRDILKIAQEPVSLETPI-----GEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEV 299
Query: 186 INVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 300 LD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 358
Query: 363 MEAML 377
++ L
Sbjct: 359 LKDFL 363
[176][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
RepID=A5VJI3_LACRD
Length = 380
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVRN + + SL+ + GD +I D + H E K N
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGD----FIEDQDATSPADHAAYEMMKKQLENV 315
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
L TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 316 LD--TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 373
Query: 360 EMEAML 377
+++ L
Sbjct: 374 QLKDFL 379
[177][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
RepID=C0XLP2_LACHI
Length = 389
Score = 55.5 bits (132), Expect = 2e-06
Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 317 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 375
Query: 339 KHAARKREMEAML 377
+H +R ++++ L
Sbjct: 376 RHPSRSKQLKDFL 388
[178][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
11577 RepID=C0WTG9_LACBU
Length = 389
Score = 55.5 bits (132), Expect = 2e-06
Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 317 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 375
Query: 339 KHAARKREMEAML 377
+H +R ++++ L
Sbjct: 376 RHPSRSKQLKDFL 388
[179][TOP]
>UniRef100_C0CQD9 RNA polymerase sigma factor n=1 Tax=Blautia hydrogenotrophica DSM
10507 RepID=C0CQD9_9FIRM
Length = 374
Score = 55.5 bits (132), Expect = 2e-06
Identities = 34/129 (26%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGVDEWTLKDE 173
K++ + + + ++ + +E SL G+ ++ D ++ +P LK++
Sbjct: 247 KEMEMSVDRVREILKISQEPV-SLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQ 305
Query: 174 VNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
+ ++++ TL +RE++++RL +GLD T E++ K ++RER+RQ+ AL KL+H +
Sbjct: 306 LVEVLS-TLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPS 364
Query: 351 RKREMEAML 377
R R+++ L
Sbjct: 365 RSRKLKDYL 373
[180][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL ERE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 339 KHAARKREMEAML 377
+H +R + ++ L
Sbjct: 355 RHPSRSKRLKDFL 367
[181][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XRX4_LACRE
Length = 380
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVRN + + SL+ + GD +I D + H E K N
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGD----FIEDQDATSPADHAAYEMMKKQLENV 315
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
L TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 316 LD--TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 373
Query: 360 EMEAML 377
+++ L
Sbjct: 374 QLKDFL 379
[182][TOP]
>UniRef100_B3JJS2 Putative uncharacterized protein n=2 Tax=Bacteroides
RepID=B3JJS2_9BACE
Length = 286
Score = 55.5 bits (132), Expect = 2e-06
Identities = 25/73 (34%), Positives = 53/73 (72%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
+L E+++ ++ TL ERE++II++++G++ + +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLSREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 339 KHAARKREMEAML 377
+ +R + +++ L
Sbjct: 273 RQNSRSKLLKSYL 285
[183][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL ERE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 339 KHAARKREMEAML 377
+H +R + ++ L
Sbjct: 364 RHPSRSKRLKDFL 376
[184][TOP]
>UniRef100_O33662 RNA polymerase sigma factor rpoD n=2 Tax=Streptococcus mutans
RepID=RPOD_STRMU
Length = 371
Score = 55.5 bits (132), Expect = 2e-06
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 280 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 337
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R +++
Sbjct: 338 FDVTRERIRQIEAKALRKLRHPSRSKQL 365
[185][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 55.5 bits (132), Expect = 2e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREVLKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[186][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
RepID=RPOD_ENTFA
Length = 368
Score = 55.5 bits (132), Expect = 2e-06
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDEVNKLIN 191
TE + ++ + +E + + G D+H +I D + H E LK+++ +++
Sbjct: 247 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYE-LLKEQLEDVLD 305
Query: 192 VTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREME 368
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 306 -TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 364
Query: 369 AML 377
L
Sbjct: 365 DFL 367
[187][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 55.1 bits (131), Expect = 3e-06
Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL ERE ++RL +GL D T E++ K G++RER+RQ+ AL KL
Sbjct: 295 LKEQLEHVLD-TLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKL 353
Query: 339 KHAARKREMEAML 377
+H +R + ++ L
Sbjct: 354 RHPSRSKRLKDFL 366
[188][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ ++++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 339 KHAARKREMEAML 377
+H +R +++ L
Sbjct: 359 RHPSRSNQLKDFL 371
[189][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[190][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[191][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 55.1 bits (131), Expect = 3e-06
Identities = 26/73 (35%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
L++++++++ TL ERE++++RL +GLD T E++ + G++RER+RQ+ AL KL
Sbjct: 298 LREQLDEVLK-TLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKL 356
Query: 339 KHAARKREMEAML 377
+H +R ++++ L
Sbjct: 357 RHPSRSKKLKDFL 369
[192][TOP]
>UniRef100_Q2NAR6 RNA polymerase sigma factor n=1 Tax=Erythrobacter litoralis
HTCC2594 RepID=Q2NAR6_ERYLH
Length = 675
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGDTHHCYIAD---NRLENIPWHGVDEWTLKDEVNKLINV 194
E + KV + +E SL GD ++ D ++ IP + LK+ V +++
Sbjct: 554 EKVRKVMKIAKEPI-SLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVL-A 611
Query: 195 TLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
+L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +R R+M +
Sbjct: 612 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRS 671
Query: 372 ML 377
L
Sbjct: 672 FL 673
[193][TOP]
>UniRef100_Q2G651 RNA polymerase sigma factor n=1 Tax=Novosphingobium aromaticivorans
DSM 12444 RepID=Q2G651_NOVAD
Length = 667
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGDTHHCYIAD---NRLENIPWHGVDEWTLKDEVNKLINV 194
E + KV + +E SL GD ++ D ++ IP + LK+ V +++
Sbjct: 546 EKVRKVMKIAKEPI-SLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVL-A 603
Query: 195 TLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
+L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +R R+M +
Sbjct: 604 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRS 663
Query: 372 ML 377
L
Sbjct: 664 FL 665
[194][TOP]
>UniRef100_Q1GUH6 RNA polymerase sigma factor n=1 Tax=Sphingopyxis alaskensis
RepID=Q1GUH6_SPHAL
Length = 669
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGDTHHCYIAD---NRLENIPWHGVDEWTLKDEVNKLINV 194
E + KV + +E SL GD ++ D ++ IP + LK+ V +++
Sbjct: 548 EKVRKVMKIAKEPI-SLETPIGDEEDSHLGDFIEDKNAVIPVDAAVQSNLKETVTRVL-A 605
Query: 195 TLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
+L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +R R+M +
Sbjct: 606 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRS 665
Query: 372 ML 377
L
Sbjct: 666 FL 667
[195][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 55.1 bits (131), Expect = 3e-06
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D + H E LK+++
Sbjct: 254 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEATSPSEHAAYE-LLKEQLED 308
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 309 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 367
Query: 360 EMEAML 377
++ L
Sbjct: 368 RLKDFL 373
[196][TOP]
>UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656
RepID=C4ZEX0_EUBR3
Length = 434
Score = 55.1 bits (131), Expect = 3e-06
Identities = 35/129 (27%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLEN---IPWHGVDEWTLKDE 173
K++ E + ++ + +E SL G+ ++ D ++ +P LK++
Sbjct: 307 KEMNMPVERVREILKISQEPV-SLETPIGEEEDSHLGDFIKDDNVPVPADAAAFTLLKEQ 365
Query: 174 VNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
+ +++ TL ERE++++ L +GL D T E++ K ++RER+RQ+ AL KL+H +
Sbjct: 366 LEEVLG-TLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPS 424
Query: 351 RKREMEAML 377
R R+++ L
Sbjct: 425 RSRKLKDYL 433
[197][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
RepID=C0QRZ3_PERMH
Length = 577
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIAD---NRLENIPWHGVDEWTLKDE 173
KKV E + K+ +E SL GD ++ D ++ P V L+ +
Sbjct: 449 KKVGMPPEKVRKILRTSQEPI-SLETPIGDDDESHLGDFIEDKTVMSPEQHVLRQALRQQ 507
Query: 174 VNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
+ ++++ TL ERE +++R +GL+ + T E + K+ G++RER+RQ+ AL KL+H
Sbjct: 508 LEEVLS-TLSEREEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKLRHPH 566
Query: 351 RKR 359
R +
Sbjct: 567 RAK 569
[198][TOP]
>UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KI23_CLOPH
Length = 372
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/73 (36%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL +RE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 300 LKEQLMEVLG-TLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 358
Query: 339 KHAARKREMEAML 377
+H +R R+++ L
Sbjct: 359 RHPSRSRKLKDYL 371
[199][TOP]
>UniRef100_A9B1B6 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B1B6_HERA2
Length = 375
Score = 55.1 bits (131), Expect = 3e-06
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR E + SL+ + + GD +I D+R P E L+++++++
Sbjct: 255 KVRRVLEVARQPVSLETPVGNEGDSVLGD----FIEDDRSSE-PLDHATEHLLREQLDEV 309
Query: 186 INVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
+ L ERER II L YGL D + T E++ + G++RER+RQ+ L KL+H A
Sbjct: 310 L-CKLDERERRIIELRYGLVDGKYRTLEEVGREFGITRERIRQIEAKVLRKLRHPA 364
[200][TOP]
>UniRef100_A6H187 RNA polymerase sigma-70 factor RpoD n=1 Tax=Flavobacterium
psychrophilum JIP02/86 RepID=A6H187_FLAPJ
Length = 287
Score = 55.1 bits (131), Expect = 3e-06
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 335
+L+ E+ + + TL RE +++RLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERSLE-TLTPREADVVRLYFGLADQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 336 LKHAARKREMEAML 377
LKH +R + ++ L
Sbjct: 273 LKHTSRSKILKTYL 286
[201][TOP]
>UniRef100_A5V3D3 RNA polymerase sigma factor n=1 Tax=Sphingomonas wittichii RW1
RepID=A5V3D3_SPHWW
Length = 674
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGDTHHCYIAD---NRLENIPWHGVDEWTLKDEVNKLINV 194
E + KV + +E SL GD ++ D ++ IP + LK+ V +++
Sbjct: 553 EKVRKVMKIAKEPI-SLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQSNLKETVTRVL-A 610
Query: 195 TLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
+L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +R R+M +
Sbjct: 611 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRS 670
Query: 372 ML 377
L
Sbjct: 671 FL 672
[202][TOP]
>UniRef100_A5FK06 RNA polymerase, sigma 70 subunit, RpoD family n=2
Tax=Flavobacterium johnsoniae RepID=A5FK06_FLAJ1
Length = 287
Score = 55.1 bits (131), Expect = 3e-06
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 335
+L+ E+ + + TL RE +++RLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERSLE-TLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 336 LKHAARKREMEAML 377
LKH +R + ++ L
Sbjct: 273 LKHTSRSKILKTYL 286
[203][TOP]
>UniRef100_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1
RepID=Q1NY91_9DELT
Length = 540
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Frame = +3
Query: 30 ISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVN---KLINVTL 200
+ V + +E SL+ G+++ ++AD +E+ DE T+ + + + + TL
Sbjct: 421 VKSVLKIAKEPL-SLDTPVGNSNDSFLADF-IEDTEAASPDEATIYENLQSNLRRVLKTL 478
Query: 201 VEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
RE ++RL +GLD LT E++ + ++RER+RQ+ AL+KLKH AR+ ++ +
Sbjct: 479 SPREEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKLKHPARRNQLSS 536
[204][TOP]
>UniRef100_Q1NMN7 RNA polymerase sigma factor (Fragment) n=1 Tax=delta
proteobacterium MLMS-1 RepID=Q1NMN7_9DELT
Length = 353
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Frame = +3
Query: 30 ISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVN---KLINVTL 200
+ V + +E SL+ G+++ ++AD +E+ DE T+ + + + + TL
Sbjct: 234 VKSVLKIAKEPL-SLDTPVGNSNDSFLADF-IEDTEAASPDEATIYENLQSNLRRVLKTL 291
Query: 201 VEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
RE ++RL +GLD LT E++ + ++RER+RQ+ AL+KLKH AR+ ++ +
Sbjct: 292 SPREEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKLKHPARRNQLSS 349
[205][TOP]
>UniRef100_Q1N7S8 RNA polymerase sigma factor n=1 Tax=Sphingomonas sp. SKA58
RepID=Q1N7S8_9SPHN
Length = 682
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGDTHHCYIAD---NRLENIPWHGVDEWTLKDEVNKLINV 194
E + KV + +E SL GD ++ D ++ IP + LK+ V +++
Sbjct: 561 EKVRKVMKIAKEPI-SLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVL-A 618
Query: 195 TLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
+L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +R R+M +
Sbjct: 619 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRS 678
Query: 372 ML 377
L
Sbjct: 679 FL 680
[206][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[207][TOP]
>UniRef100_D0BKM7 RNA polymerase sigma-43 factor n=1 Tax=Granulicatella elegans ATCC
700633 RepID=D0BKM7_9LACT
Length = 374
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/74 (36%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQVGLVALEK 335
LK+++++++ L +RE ++RL +GLDK E T E + + G++RER+RQ+ AL K
Sbjct: 301 LKEQLDEVLE-QLTDREENVLRLRFGLDKNGEIRTLEQVGQVFGVTRERIRQIEAKALRK 359
Query: 336 LKHAARKREMEAML 377
L+H +R ++++ L
Sbjct: 360 LRHPSRSKQLKDFL 373
[208][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL RE +++RL +GLD T E++ + G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKL 359
Query: 339 KHAARKREMEAML 377
+H +R R+++ L
Sbjct: 360 RHPSRSRKLKDFL 372
[209][TOP]
>UniRef100_C8WEJ4 RNA polymerase, sigma 70 subunit, RpoD n=1 Tax=Zymomonas mobilis
subsp. mobilis NCIMB 11163 RepID=C8WEJ4_ZYMMO
Length = 671
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGDTHHCYIAD---NRLENIPWHGVDEWTLKDEVNKLINV 194
E + KV + +E SL GD ++ D ++ IP + LK+ V +++
Sbjct: 550 EKVRKVMKIAKEPI-SLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVL-A 607
Query: 195 TLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
+L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +R R+M +
Sbjct: 608 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRS 667
Query: 372 ML 377
L
Sbjct: 668 FL 669
[210][TOP]
>UniRef100_C8NEW7 RNA polymerase sigma-43 factor n=1 Tax=Granulicatella adiacens ATCC
49175 RepID=C8NEW7_9LACT
Length = 374
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/74 (36%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQVGLVALEK 335
LK+++++++ L +RE ++RL +GLDK E T E + + G++RER+RQ+ AL K
Sbjct: 301 LKEQLDEVLE-QLTDREENVLRLRFGLDKNGEIRTLEQVGQVFGVTRERIRQIEAKALRK 359
Query: 336 LKHAARKREMEAML 377
L+H +R ++++ L
Sbjct: 360 LRHPSRSKQLKDFL 373
[211][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[212][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[213][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 222 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 276
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 277 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 335
Query: 360 EME 368
++
Sbjct: 336 RLK 338
[214][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[215][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 55.1 bits (131), Expect = 3e-06
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D + H E LK+++
Sbjct: 257 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEATSPSEHAAYE-LLKEQLED 311
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 312 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 370
Query: 360 EMEAML 377
++ L
Sbjct: 371 RLKDFL 376
[216][TOP]
>UniRef100_C6I5X7 RpoD n=3 Tax=Bacteroides RepID=C6I5X7_9BACE
Length = 286
Score = 55.1 bits (131), Expect = 3e-06
Identities = 25/73 (34%), Positives = 53/73 (72%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
+L E+++ ++ TL +RE+EII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 339 KHAARKREMEAML 377
+ + R + +++ L
Sbjct: 273 RQSNRSKLLKSYL 285
[217][TOP]
>UniRef100_C5THB0 RNA polymerase sigma factor n=2 Tax=Zymomonas mobilis
RepID=C5THB0_ZYMMO
Length = 671
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGDTHHCYIAD---NRLENIPWHGVDEWTLKDEVNKLINV 194
E + KV + +E SL GD ++ D ++ IP + LK+ V +++
Sbjct: 550 EKVRKVMKIAKEPI-SLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVL-A 607
Query: 195 TLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
+L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +R R+M +
Sbjct: 608 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRS 667
Query: 372 ML 377
L
Sbjct: 668 FL 669
[218][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[219][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[220][TOP]
>UniRef100_C5NX65 RNA polymerase sigma factor n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NX65_9BACL
Length = 361
Score = 55.1 bits (131), Expect = 3e-06
Identities = 34/129 (26%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDRE--AFPSLNGLPGDTH-HCYIADNRLENIPWHGVDEWTLKDE 173
KK+ E + ++ + +E + + G D+H +I D ++ H +E LK++
Sbjct: 234 KKMNMTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKEAQSPVEHAANE-LLKEQ 292
Query: 174 VNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 350
+ +++ TL +RE +++L +GL D + T E++ G++RER+RQ+ A+ KLKH +
Sbjct: 293 LEEILE-TLTDREENVLKLRFGLKDGKTHTLEEVGSAFGVTRERIRQIEAKAIRKLKHPS 351
Query: 351 RKREMEAML 377
+ +++ +
Sbjct: 352 KLNKLKGFM 360
[221][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 247 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 301
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 302 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 360
Query: 360 EME 368
++
Sbjct: 361 RLK 363
[222][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EU48_9BACT
Length = 387
Score = 55.1 bits (131), Expect = 3e-06
Identities = 26/73 (35%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
L++++ +++ L +RE+E++RL +GL D T E++ +R G++RER+RQ+ AL KL
Sbjct: 315 LREQLEEMLE-DLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKALRKL 373
Query: 339 KHAARKREMEAML 377
+H +R + + L
Sbjct: 374 RHPSRSKRLRDFL 386
[223][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[224][TOP]
>UniRef100_C2FI52 RNA polymerase sigma factor n=2 Tax=Lactobacillus plantarum
RepID=C2FI52_LACPL
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 21 TEAISKVFSLDRE--AFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINV 194
TE + ++ + +E + + G D+H +++ P LK+++ +++
Sbjct: 247 TEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLD- 305
Query: 195 TLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 306 TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKD 365
Query: 372 ML 377
L
Sbjct: 366 FL 367
[225][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ ++++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 339 KHAARKREMEAML 377
+H +R +++ L
Sbjct: 359 RHPSRSNQLKDFL 371
[226][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ ++++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 339 KHAARKREMEAML 377
+H +R +++ L
Sbjct: 360 RHPSRSNQLKDFL 372
[227][TOP]
>UniRef100_A4VWA5 RNA polymerase sigma factor n=6 Tax=Streptococcus suis
RepID=A4VWA5_STRSY
Length = 372
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D +EN P L++++++
Sbjct: 251 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDE 305
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R +
Sbjct: 306 VLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSK 364
Query: 360 EM 365
+
Sbjct: 365 PL 366
[228][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[229][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
43243 RepID=B7AQM8_9BACE
Length = 448
Score = 55.1 bits (131), Expect = 3e-06
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D+ + +P LK+++ +++ TL ERE++++RL +GLD T E++ +
Sbjct: 358 FIQDDNVP-VPAEEAASTILKEQLVEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGRE 415
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREMEAML 377
++RER+RQ+ AL KL+H +R R++ L
Sbjct: 416 FNVTRERIRQIEAKALRKLRHPSRSRKLRDFL 447
[230][TOP]
>UniRef100_A6L3X4 RNA polymerase sigma factor rpoD n=5 Tax=Bacteroides
RepID=A6L3X4_BACV8
Length = 286
Score = 55.1 bits (131), Expect = 3e-06
Identities = 25/73 (34%), Positives = 53/73 (72%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
+L E+++ ++ TL ERE++II++++G++ + +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 339 KHAARKREMEAML 377
+ +R + +++ L
Sbjct: 273 RQNSRSKLLKSYL 285
[231][TOP]
>UniRef100_B6FR93 RNA polymerase sigma factor n=1 Tax=Clostridium nexile DSM 1787
RepID=B6FR93_9CLOT
Length = 370
Score = 55.1 bits (131), Expect = 3e-06
Identities = 29/92 (31%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKR 281
+I D+ + +P LK+++ ++++ TL +RE++++RL +G+ D T E++ K
Sbjct: 280 FIQDDNVP-VPAEAAAATLLKEQLGEVLD-TLTDREQKVLRLRFGMNDGRARTLEEVGKE 337
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREMEAML 377
++RER+RQ+ AL KL+H +R R++ L
Sbjct: 338 FDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 369
[232][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 55.1 bits (131), Expect = 3e-06
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D + H E LK+++
Sbjct: 255 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEATSPSEHAAYE-LLKEQLED 309
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 310 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 368
Query: 360 EMEAML 377
++ L
Sbjct: 369 RLKDFL 374
[233][TOP]
>UniRef100_B3CB36 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis
DSM 17393 RepID=B3CB36_9BACE
Length = 286
Score = 55.1 bits (131), Expect = 3e-06
Identities = 25/73 (34%), Positives = 53/73 (72%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
+L E+++ ++ TL +RE+EII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 339 KHAARKREMEAML 377
+ + R + +++ L
Sbjct: 273 RQSNRSKLLKSYL 285
[234][TOP]
>UniRef100_A9DMX0 RNA polymerase sigma-70 factor n=1 Tax=Kordia algicida OT-1
RepID=A9DMX0_9FLAO
Length = 287
Score = 55.1 bits (131), Expect = 3e-06
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 335
+LK E+ + + TL RE ++IRLY+GL ++ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLKTEIERALE-TLTPREADVIRLYFGLGNQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 336 LKHAARKREMEAML 377
LKH +R + ++ L
Sbjct: 273 LKHTSRSKILKTYL 286
[235][TOP]
>UniRef100_C3R1S4 RNA polymerase sigma factor rpoD n=9 Tax=Bacteroides
RepID=C3R1S4_9BACE
Length = 286
Score = 55.1 bits (131), Expect = 3e-06
Identities = 25/73 (34%), Positives = 53/73 (72%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 338
+L E+++ ++ TL +RE+EII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 339 KHAARKREMEAML 377
+ + R + +++ L
Sbjct: 273 RQSNRSKLLKSYL 285
[236][TOP]
>UniRef100_A3WCJ2 RNA polymerase sigma factor n=1 Tax=Erythrobacter sp. NAP1
RepID=A3WCJ2_9SPHN
Length = 674
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Frame = +3
Query: 24 EAISKVFSLDREAFPSLNGLPGDTHHCYIAD---NRLENIPWHGVDEWTLKDEVNKLINV 194
E + KV + +E SL GD ++ D ++ IP + LK+ V +++
Sbjct: 553 EKVRKVMKIAKEPI-SLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRVL-A 610
Query: 195 TLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEA 371
+L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +R R+M +
Sbjct: 611 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRS 670
Query: 372 ML 377
L
Sbjct: 671 FL 672
[237][TOP]
>UniRef100_A3J4K9 RNA polymerase sigma-70 factor n=1 Tax=Flavobacteria bacterium
BAL38 RepID=A3J4K9_9FLAO
Length = 287
Score = 55.1 bits (131), Expect = 3e-06
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 335
+L+ E+ + + TL RE +++RLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLQTEIERALE-TLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 336 LKHAARKREMEAML 377
LKH +R + ++ L
Sbjct: 273 LKHTSRSKILKTYL 286
[238][TOP]
>UniRef100_A2TVH6 Putative sigma factor A n=1 Tax=Dokdonia donghaensis MED134
RepID=A2TVH6_9FLAO
Length = 287
Score = 55.1 bits (131), Expect = 3e-06
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 159 TLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 335
+LK E+ + + TL RE +++RLY+GL D+ ++ E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLKTEIERALE-TLTPREADVVRLYFGLGDQRPMSLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 336 LKHAARKREMEAML 377
LKH +R + ++ L
Sbjct: 273 LKHTSRSKILKTYL 286
[239][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[240][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 55.1 bits (131), Expect = 3e-06
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D ++ H E LK+++
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEAQSPSDHAAYE-LLKEQLED 302
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 303 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 360 EME 368
++
Sbjct: 362 RLK 364
[241][TOP]
>UniRef100_UPI0001BB60BF RNA polymerase sigma-70 factor n=1 Tax=Blattabacterium sp.
(Blattella germanica) str. Bge RepID=UPI0001BB60BF
Length = 287
Score = 54.7 bits (130), Expect = 4e-06
Identities = 28/82 (34%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Frame = +3
Query: 135 PWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQ 311
P +++ +L+ ++ +++ TL ERER +I L++GL+ +T E++ + L+RERVRQ
Sbjct: 206 PDEHLEKESLRKDIKRILE-TLSERERRVIILHFGLNGSPPMTLEEVGQSCDLTRERVRQ 264
Query: 312 VGLVALEKLKHAARKREMEAML 377
+ +AL++LKH++R + ++ L
Sbjct: 265 IESIALKRLKHSSRSKILKPYL 286
[242][TOP]
>UniRef100_UPI0001BB55B2 RNA polymerase sigma factor RpoD n=1 Tax=Streptococcus sp.
2_1_36FAA RepID=UPI0001BB55B2
Length = 370
Score = 54.7 bits (130), Expect = 4e-06
Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +3
Query: 105 YIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKR 281
+I D +EN P L+++++++++ TL +RE ++RL +GLD + T ED+ K
Sbjct: 279 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 336
Query: 282 IGLSRERVRQVGLVALEKLKHAARKREM 365
++RER+RQ+ AL KL+H +R + +
Sbjct: 337 FNVTRERIRQIEAKALRKLRHPSRSKPL 364
[243][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 54.7 bits (130), Expect = 4e-06
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D + H E LK+++
Sbjct: 253 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEATSPADHAAYE-LLKEQLED 307
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 308 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 366
Query: 360 EMEAML 377
++ L
Sbjct: 367 RLKDFL 372
[244][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 54.7 bits (130), Expect = 4e-06
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D + H E LK+++
Sbjct: 253 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEATSPSDHAAYE-LLKEQLED 307
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 308 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 366
Query: 360 EMEAML 377
++ L
Sbjct: 367 RLKDFL 372
[245][TOP]
>UniRef100_Q1IIK4 RNA polymerase sigma factor n=1 Tax=Candidatus Koribacter
versatilis Ellin345 RepID=Q1IIK4_ACIBL
Length = 574
Score = 54.7 bits (130), Expect = 4e-06
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Frame = +3
Query: 6 KVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKL 185
KVR + + SL+ G D+H ++R P V LKD+ ++
Sbjct: 451 KVRKVLKIAQEPISLETPI-----GEEEDSHLGDFIEDRSMVSPAEAVINVNLKDQTAQV 505
Query: 186 INVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRE 362
+ TL RE ++I++ +GL D T E++ + ++RER+RQ+ AL KL+H +R R+
Sbjct: 506 LR-TLTAREEKVIKMRFGLEDGSEHTLEEVGQSFAVTRERIRQIEAKALRKLRHPSRSRK 564
Query: 363 MEAML 377
+ A L
Sbjct: 565 LRAFL 569
[246][TOP]
>UniRef100_Q18C16 RNA polymerase sigma factor n=2 Tax=Clostridium difficile
RepID=Q18C16_CLOD6
Length = 296
Score = 54.7 bits (130), Expect = 4e-06
Identities = 30/95 (31%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Frame = +3
Query: 111 ADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIG 287
+D +++ H V++ LK+++ +L+ L E+E++++R+ +G+D + T E I K G
Sbjct: 208 SDADFKDVVIHEVEQHNLKEKIEELLT-GLGEQEQQVLRMRFGIDDDDPKTLEQIGKVFG 266
Query: 288 LSRERVRQVGLVALEKLKHAARKREMEAMLLKH*Y 392
++RER+RQ+ A+ KL+H ++ ++ LKH Y
Sbjct: 267 VTRERIRQIEAKAIRKLRHPSKLKQ-----LKHFY 296
[247][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F68_PEDPA
Length = 379
Score = 54.7 bits (130), Expect = 4e-06
Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 162 LKDEVNKLINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 338
LK+++ +++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 307 LKEQLEGVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 365
Query: 339 KHAARKREMEAML 377
+H +R ++++ L
Sbjct: 366 RHPSRSKQLKDFL 378
[248][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 54.7 bits (130), Expect = 4e-06
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D + H E LK+++
Sbjct: 253 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEATSPADHAAYE-LLKEQLED 307
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 308 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 366
Query: 360 EMEAML 377
++ L
Sbjct: 367 RLKDFL 372
[249][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 54.7 bits (130), Expect = 4e-06
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ + GD +I D + H E LK+++
Sbjct: 255 EKVREILKIAQEPVSLETPIGEEDDSHLGD----FIEDQEATSPADHAAYE-LLKEQLED 309
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 310 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 368
Query: 360 EMEAML 377
++ L
Sbjct: 369 RLKDFL 374
[250][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 54.7 bits (130), Expect = 4e-06
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 KKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNK 182
+KVR + + SL+ G D+H +++ P LK+++
Sbjct: 241 EKVREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDQDATAPQDAAAYELLKEQLED 295
Query: 183 LINVTLVEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKR 359
+++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R +
Sbjct: 296 VLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 354
Query: 360 EMEAML 377
++ L
Sbjct: 355 RLKDFL 360