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[1][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 256 bits (655), Expect = 4e-67
Identities = 126/143 (88%), Positives = 140/143 (97%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
YSENGRHP++EEVAEATGLSMKRL+AVLLTPKAPRSL+QKIGINQNLKPSEVIADP+AET
Sbjct: 436 YSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAET 495
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
AEE LIKQFM++DLEKVL+SLNPREKQVIRWR+G++DGR KTLQEIGE++GVSRERIRQI
Sbjct: 496 AEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQI 555
Query: 140 ESCAFRKLKNKKRNKHLQQYLVS 72
ESCAFRKLKNK+R KHLQQYLVS
Sbjct: 556 ESCAFRKLKNKRRTKHLQQYLVS 578
[2][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 256 bits (655), Expect = 4e-67
Identities = 126/143 (88%), Positives = 140/143 (97%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
YSENGRHP++EEVAEATGLSMKRL+AVLLTPKAPRSL+QKIGINQNLKPSEVIADP+AET
Sbjct: 93 YSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAET 152
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
AEE LIKQFM++DLEKVL+SLNPREKQVIRWR+G++DGR KTLQEIGE++GVSRERIRQI
Sbjct: 153 AEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQI 212
Query: 140 ESCAFRKLKNKKRNKHLQQYLVS 72
ESCAFRKLKNK+R KHLQQYLVS
Sbjct: 213 ESCAFRKLKNKRRTKHLQQYLVS 235
[3][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 245 bits (626), Expect = 1e-63
Identities = 121/143 (84%), Positives = 136/143 (95%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
YSENGRHPDDEEVAEA GLSMKRLSAVLLTPKAPRSL+QKIG+N +LKPSEVIADPEAET
Sbjct: 427 YSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAET 486
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
AEE L+KQFMK+DLEKVL++LNPRE QV+RWRFG++DGRMKTLQEIGE++GVSRERIRQI
Sbjct: 487 AEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQI 546
Query: 140 ESCAFRKLKNKKRNKHLQQYLVS 72
ES AFRKLKNKKR K L+QYL++
Sbjct: 547 ESSAFRKLKNKKRTKQLKQYLLA 569
[4][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 238 bits (608), Expect = 1e-61
Identities = 117/143 (81%), Positives = 133/143 (93%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
YSE G+HP +EE+AEATGLSMKRL AVLL+PK PRSL+QKIG+NQNLKPSEVIADPEA T
Sbjct: 428 YSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVT 487
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
+E+ LIK+FM++DL+KVLDSL REKQVIRWRFGM+DGRMKTLQEIGEM+GVSRER+RQI
Sbjct: 488 SEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQI 547
Query: 140 ESCAFRKLKNKKRNKHLQQYLVS 72
ES AFRKLKNKKRN HLQQYLV+
Sbjct: 548 ESSAFRKLKNKKRNNHLQQYLVA 570
[5][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 238 bits (606), Expect = 2e-61
Identities = 117/143 (81%), Positives = 132/143 (92%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
YSE G+HP +EE+AEATGLSMKRL AVLL+PK PRSL+QKIG+NQNLKPSEVIADPEA T
Sbjct: 428 YSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVT 487
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
E+ LIK+FM++DL+KVLDSL REKQVIRWRFGM+DGRMKTLQEIGEM+GVSRER+RQI
Sbjct: 488 PEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQI 547
Query: 140 ESCAFRKLKNKKRNKHLQQYLVS 72
ES AFRKLKNKKRN HLQQYLV+
Sbjct: 548 ESSAFRKLKNKKRNNHLQQYLVA 570
[6][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 237 bits (604), Expect = 4e-61
Identities = 116/143 (81%), Positives = 133/143 (93%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
YSE G+HP +EE+AEATGLSMKRL AVLL+PK PRSL++KIG+NQNLKPSEVIADPEA T
Sbjct: 430 YSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVT 489
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
+E+ LIK+FM++DL+KVLDSL REKQVIRWRFGM+DGRMKTLQEIGEM+GVSRER+RQI
Sbjct: 490 SEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQI 549
Query: 140 ESCAFRKLKNKKRNKHLQQYLVS 72
ES AFRKLKNKKRN HLQQYLV+
Sbjct: 550 ESSAFRKLKNKKRNNHLQQYLVA 572
[7][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 236 bits (603), Expect = 5e-61
Identities = 118/143 (82%), Positives = 132/143 (92%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
YSENGRHPDD+EVAEATGLSMKRLSAVLLTPKAPRSL+QK+G N +LK SEV ADPEAET
Sbjct: 422 YSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAET 481
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
AE+ L+K+FMKKDLE+VL+SL+PRE QVIRWRFGM+DGRMKTLQEIGE++GVSRERIRQI
Sbjct: 482 AEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQI 541
Query: 140 ESCAFRKLKNKKRNKHLQQYLVS 72
E AFRKLKNK R K L+QYLVS
Sbjct: 542 ELSAFRKLKNKNRTKQLRQYLVS 564
[8][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 233 bits (593), Expect = 7e-60
Identities = 115/143 (80%), Positives = 132/143 (92%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
YSE G+ P +EEVAEATGLSMKRL AVLL+PK PRSL+QKIGIN NLKPSEVIADPEAET
Sbjct: 428 YSETGKQPKNEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSEVIADPEAET 487
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
+E+ L+KQFM++DL+KVLDSL+ REKQVIRWRFGM+DGRMKTLQEIGE +GVSRER+RQI
Sbjct: 488 SEDILMKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQI 547
Query: 140 ESCAFRKLKNKKRNKHLQQYLVS 72
++ AFRKLKNKKRN HLQQYLV+
Sbjct: 548 DTSAFRKLKNKKRNSHLQQYLVA 570
[9][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 229 bits (585), Expect = 6e-59
Identities = 113/143 (79%), Positives = 129/143 (90%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
YSENGRHPDD+EVAEA GLSMKRLSAVLLTPKAPRSL+QK+G N +LK SEV ADPEAET
Sbjct: 425 YSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAET 484
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
AE+ L+K+FMKKDL KVL SL+PRE QV+RWRFGM+DGRMKTLQEIGE++GVSRER+RQI
Sbjct: 485 AEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQI 544
Query: 140 ESCAFRKLKNKKRNKHLQQYLVS 72
E AFRKLKNK R K L+QY+V+
Sbjct: 545 ELSAFRKLKNKNRTKQLRQYMVA 567
[10][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 228 bits (580), Expect = 2e-58
Identities = 112/140 (80%), Positives = 131/140 (93%)
Frame = -1
Query: 497 SENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETA 318
SENG+ P++EEVAEATGLSMKRL+AVL+TPKAPRSL+QKIG N NLKPSEVIADPEAETA
Sbjct: 434 SENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETA 493
Query: 317 EEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIE 138
E+ L KQFM++DLEKVLD+L+ REKQVIRWRFG++DGRMKTLQEIGE++GVSRERIRQIE
Sbjct: 494 EDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 553
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S AFRKL+NKK+ +LQQY+
Sbjct: 554 SSAFRKLQNKKKTINLQQYM 573
[11][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
bicolor RepID=C6JRK5_SORBI
Length = 238
Score = 145 bits (365), Expect = 2e-33
Identities = 78/137 (56%), Positives = 101/137 (73%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L
Sbjct: 98 RRPTNEEIALDTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEML 156
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MKKD+ K LD+L REKQV+ RFG++D R++TLQEIG ++GVSRERIRQIES AF
Sbjct: 157 NRMSMKKDVHKALDTLTTREKQVVVLRFGLEDDRIRTLQEIGNIMGVSRERIRQIESGAF 216
Query: 125 RKLKNKKRNKHLQQYLV 75
RKL++KKR K L+ YLV
Sbjct: 217 RKLRSKKRVKALKDYLV 233
[12][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 144 bits (364), Expect = 2e-33
Identities = 77/137 (56%), Positives = 101/137 (73%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L
Sbjct: 399 RRPTNEEIAVDTGIPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEML 457
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MKKD+ LD+L REKQV+ RFG++DGR++TLQEIG ++GVSRERIRQIES AF
Sbjct: 458 NRMSMKKDVHMALDTLTTREKQVVVLRFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAF 517
Query: 125 RKLKNKKRNKHLQQYLV 75
RKL++KK+ K L+ YLV
Sbjct: 518 RKLRSKKKVKALKDYLV 534
[13][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 144 bits (364), Expect = 2e-33
Identities = 76/138 (55%), Positives = 101/138 (73%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L
Sbjct: 424 RRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEML 482
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MK+D+ K LD+L RE+QV+ RFG++DGR++TLQEIG +GVSRERIRQIES AF
Sbjct: 483 NRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAF 542
Query: 125 RKLKNKKRNKHLQQYLVS 72
RKL++KKR L+ YLV+
Sbjct: 543 RKLRSKKRVNALKDYLVT 560
[14][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 144 bits (363), Expect = 3e-33
Identities = 76/137 (55%), Positives = 100/137 (72%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L
Sbjct: 424 RRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEML 482
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MK+D+ K LD+L RE+QV+ RFG++DGR++TLQEIG +GVSRERIRQIES AF
Sbjct: 483 NRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAF 542
Query: 125 RKLKNKKRNKHLQQYLV 75
RKL++KKR L+ YLV
Sbjct: 543 RKLRSKKRVNALKDYLV 559
[15][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 144 bits (363), Expect = 3e-33
Identities = 76/137 (55%), Positives = 100/137 (72%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L
Sbjct: 424 RRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEML 482
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MK+D+ K LD+L RE+QV+ RFG++DGR++TLQEIG +GVSRERIRQIES AF
Sbjct: 483 NRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAF 542
Query: 125 RKLKNKKRNKHLQQYLV 75
RKL++KKR L+ YLV
Sbjct: 543 RKLRSKKRVNALKDYLV 559
[16][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 144 bits (363), Expect = 3e-33
Identities = 76/137 (55%), Positives = 100/137 (72%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L
Sbjct: 423 RRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEML 481
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MK+D+ K LD+L RE+QV+ RFG++DGR++TLQEIG +GVSRERIRQIES AF
Sbjct: 482 NRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAF 541
Query: 125 RKLKNKKRNKHLQQYLV 75
RKL++KKR L+ YLV
Sbjct: 542 RKLRSKKRVNALKDYLV 558
[17][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 141 bits (355), Expect = 3e-32
Identities = 68/139 (48%), Positives = 105/139 (75%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E+GR +EEVAE GL++++L +V+ + KAP S+E+ IG + + E++AD + ++ E
Sbjct: 434 EHGREARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPE 493
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ ++KQ M++D+E VL +LNPRE++V+R RFG+DDGR KTL+EIG++ V+RERIRQIE+
Sbjct: 494 DAIVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEA 553
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL+ RN L++YL
Sbjct: 554 KAMRKLRQPSRNSILREYL 572
[18][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 140 bits (354), Expect = 3e-32
Identities = 70/141 (49%), Positives = 97/141 (68%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
Y E+ R P EEVAE G+SM RL V + P SL++ +G + + K SE++AD +E+
Sbjct: 353 YQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSES 412
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
E + K+ KKDL++VLD+L REKQV+R R+G+DDGRMK+L E+GE +SRER+RQI
Sbjct: 413 TETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQI 472
Query: 140 ESCAFRKLKNKKRNKHLQQYL 78
E A RKL+ R +HL+ YL
Sbjct: 473 EMKAMRKLRQNHRTQHLKHYL 493
[19][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 140 bits (354), Expect = 3e-32
Identities = 70/141 (49%), Positives = 97/141 (68%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
Y E+ R P EEVAE G+SM RL V + P SL++ +G + + K SE++AD +E+
Sbjct: 450 YQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSES 509
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
E + K+ KKDL++VLD+L REKQV+R R+G+DDGRMK+L E+GE +SRER+RQI
Sbjct: 510 TETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQI 569
Query: 140 ESCAFRKLKNKKRNKHLQQYL 78
E A RKL+ R +HL+ YL
Sbjct: 570 EMKAMRKLRQNHRTQHLKHYL 590
[20][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 139 bits (349), Expect = 1e-31
Identities = 69/136 (50%), Positives = 97/136 (71%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG+ ++R+ A + PK SL K+G ++ E+ D ETAEE L
Sbjct: 400 RLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEML 458
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MK+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++GVSRERIRQIE AF
Sbjct: 459 HRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAF 518
Query: 125 RKLKNKKRNKHLQQYL 78
RKL+ +K+ + LQ YL
Sbjct: 519 RKLRGRKKVQSLQHYL 534
[21][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 139 bits (349), Expect = 1e-31
Identities = 69/136 (50%), Positives = 97/136 (71%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG+ ++R+ A + PK SL K+G ++ E+ D ETAEE L
Sbjct: 203 RLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEML 261
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MK+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++GVSRERIRQIE AF
Sbjct: 262 HRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAF 321
Query: 125 RKLKNKKRNKHLQQYL 78
RKL+ +K+ + LQ YL
Sbjct: 322 RKLRGRKKVQSLQHYL 337
[22][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 139 bits (349), Expect = 1e-31
Identities = 69/136 (50%), Positives = 97/136 (71%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG+ ++R+ A + PK SL K+G ++ E+ D ETAEE L
Sbjct: 357 RLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEML 415
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MK+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++GVSRERIRQIE AF
Sbjct: 416 HRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAF 475
Query: 125 RKLKNKKRNKHLQQYL 78
RKL+ +K+ + LQ YL
Sbjct: 476 RKLRGRKKVQSLQHYL 491
[23][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 139 bits (349), Expect = 1e-31
Identities = 69/136 (50%), Positives = 97/136 (71%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG+ ++R+ A + PK SL K+G ++ E+ D ETAEE L
Sbjct: 400 RLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEML 458
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MK+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++GVSRERIRQIE AF
Sbjct: 459 HRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAF 518
Query: 125 RKLKNKKRNKHLQQYL 78
RKL+ +K+ + LQ YL
Sbjct: 519 RKLRGRKKVQSLQHYL 534
[24][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 138 bits (348), Expect = 2e-31
Identities = 67/139 (48%), Positives = 103/139 (74%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E+GR P DEEVAE G+S+++L ++ + K P S+++ IG ++ E+IAD + E+ E
Sbjct: 448 EHGRQPRDEEVAELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPE 507
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ LI+Q +K+D++ VL +LNPRE++V+R RFG+DDG+ +TL+EIG + V+RERIRQIE+
Sbjct: 508 DDLIRQVLKQDVDGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEA 567
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL+ RN L++YL
Sbjct: 568 KAMRKLRQPSRNGVLREYL 586
[25][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 132 bits (332), Expect = 1e-29
Identities = 68/136 (50%), Positives = 97/136 (71%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG++++R+ A + PK S K+G ++ E++ D AETAEE L
Sbjct: 387 RLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTSAETAEETL 445
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MKKD+ LDSL+PR+KQV+R+RFG++ GR +TL +IG+++GVSRERIRQIE AF
Sbjct: 446 HRWLMKKDVNTALDSLSPRKKQVMRYRFGIEGGRARTLHDIGQLMGVSRERIRQIELGAF 505
Query: 125 RKLKNKKRNKHLQQYL 78
RKL++K R + LQ YL
Sbjct: 506 RKLRSKNRLQSLQHYL 521
[26][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 130 bits (327), Expect = 5e-29
Identities = 68/136 (50%), Positives = 97/136 (71%)
Frame = -1
Query: 485 RHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQL 306
R P +EE+A TG++++R+ A + PK S K+G ++ E++ D AETAEE L
Sbjct: 388 RLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTSAETAEEVL 446
Query: 305 IKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 126
+ MKKD+ L+SL+PREK V+R+RFG++ GR +TL +IG+++GVSRERIRQIE AF
Sbjct: 447 HRWLMKKDVNTALESLSPREKLVMRYRFGIEGGRPRTLHDIGQIMGVSRERIRQIELGAF 506
Query: 125 RKLKNKKRNKHLQQYL 78
RKL++KKR + LQ YL
Sbjct: 507 RKLRSKKRVQSLQHYL 522
[27][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 129 bits (323), Expect = 1e-28
Identities = 64/139 (46%), Positives = 100/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 251 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 309
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+Q+ K +++DLEKVLDSL+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 310 DQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 369
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 370 KALRKLRHPNRNSVLKEYI 388
[28][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 129 bits (323), Expect = 1e-28
Identities = 64/139 (46%), Positives = 100/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 253 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 311
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+Q+ K +++DLEKVLDSL+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 312 DQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 371
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 372 KALRKLRHPNRNSVLKEYI 390
[29][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 129 bits (323), Expect = 1e-28
Identities = 64/139 (46%), Positives = 100/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 252 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 310
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+Q+ K +++DLEKVLDSL+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 311 DQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 370
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 371 KALRKLRHPNRNSVLKEYI 389
[30][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 126 bits (317), Expect = 7e-28
Identities = 62/139 (44%), Positives = 100/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A+ +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 242 ELGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 300
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+Q+ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 301 DQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 360
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 361 KALRKLRHPNRNSILKEYI 379
[31][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 125 bits (315), Expect = 1e-27
Identities = 62/139 (44%), Positives = 99/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 249 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 307
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+Q+ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 308 DQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 367
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 368 KALRKLRHPNRNSILKEYI 386
[32][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 125 bits (315), Expect = 1e-27
Identities = 62/139 (44%), Positives = 99/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 253 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 311
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+Q+ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 312 DQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 371
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 372 KALRKLRHPNRNSILKEYI 390
[33][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 124 bits (312), Expect = 3e-27
Identities = 62/139 (44%), Positives = 99/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 237 ELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 295
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+Q+ K +++DLE VLD+L+ RE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 296 DQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 355
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 356 KALRKLRHPNRNSILKEYI 374
[34][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 124 bits (312), Expect = 3e-27
Identities = 61/139 (43%), Positives = 100/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A + +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 248 EMGRKPTEEEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 306
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VL+SL+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 307 DEVSKNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 366
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 367 KALRKLRHPNRNSILKEYI 385
[35][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 124 bits (311), Expect = 3e-27
Identities = 61/139 (43%), Positives = 99/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 233 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 291
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+Q+ K +++DLE VLD+L+PRE+ V++ R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 292 DQVSKSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 351
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 352 KALRKLRHPNRNSVLKEYI 370
[36][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 124 bits (310), Expect = 4e-27
Identities = 61/139 (43%), Positives = 99/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+AE +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 287 EMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 345
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 346 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 405
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 406 KALRKLRHPNRNSILKEYI 424
[37][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 123 bits (308), Expect = 7e-27
Identities = 61/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + E ET E
Sbjct: 266 ELGRRPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESEGETPE 324
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E++ K +++DLE VL++L PRE+ V++ R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 325 ERVAKVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 384
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 385 KALRKLRHPNRNSVLKEYI 403
[38][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 122 bits (306), Expect = 1e-26
Identities = 60/139 (43%), Positives = 99/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A+ +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 280 EMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 338
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+Q+ K +++DLE VL +L+PRE+ V++ R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 339 DQVSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEA 398
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 399 KALRKLRHPNRNSVLKEYI 417
[39][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 122 bits (306), Expect = 1e-26
Identities = 60/139 (43%), Positives = 99/139 (71%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 262 ELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 320
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VL++L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 321 DKVAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEA 380
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 381 KALRKLRHPNRNSVLKEYI 399
[40][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 122 bits (306), Expect = 1e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 261 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 319
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 320 DEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEA 379
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 380 KALRKLRHPNRNSILKEYI 398
[41][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 122 bits (306), Expect = 1e-26
Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 1/140 (0%)
Frame = -1
Query: 491 NGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-INQNLKPSEVIADPEAETAE 315
NGR P EE+A +S+++++ + +AP SL Q +G N+ + + D AE E
Sbjct: 376 NGRPPTLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLIDANAEGPE 435
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ K +K+DLE VL++LNPRE+ V+R R+G+DDGR+KTL+EIG + V+RERIRQIE+
Sbjct: 436 KVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEA 495
Query: 134 CAFRKLKNKKRNKHLQQYLV 75
A RKLK RN+ LQ+Y V
Sbjct: 496 KALRKLKQPSRNQVLQEYFV 515
[42][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 122 bits (306), Expect = 1e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 261 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 319
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 320 DEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEA 379
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 380 KALRKLRHPNRNSILKEYI 398
[43][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 122 bits (305), Expect = 2e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 266 ELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 324
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 325 DEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 384
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 385 KALRKLRHPNRNSVLKEYI 403
[44][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 122 bits (305), Expect = 2e-26
Identities = 64/138 (46%), Positives = 92/138 (66%), Gaps = 1/138 (0%)
Frame = -1
Query: 491 NGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-INQNLKPSEVIADPEAETAE 315
NGR+P EE+A +S ++++ + +AP SL Q +G N+ + + D AE E
Sbjct: 190 NGRNPTTEEIAAEMDMSAEKITQIKKAAQAPVSLAQTMGGDNKGRTVEDTLVDVTAEGPE 249
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ K +K+DLE VL++LNPRE+ V+R R+G+DDGR+KTL+EIG + V+RERIRQIE+
Sbjct: 250 KVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEA 309
Query: 134 CAFRKLKNKKRNKHLQQY 81
A RKLK RN LQ+Y
Sbjct: 310 KALRKLKQPSRNSILQEY 327
[45][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 121 bits (304), Expect = 2e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 238 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 296
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 297 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 356
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 357 KALRKLRHPNRNSILKEYI 375
[46][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 121 bits (304), Expect = 2e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 278 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 336
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 396
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 397 KALRKLRHPNRNSILKEYI 415
[47][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 121 bits (304), Expect = 2e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 278 EMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 336
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 396
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 397 KALRKLRHPNRNSILKEYI 415
[48][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 121 bits (304), Expect = 2e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 276 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 334
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 335 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 394
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 395 KALRKLRHPNRNSILKEYI 413
[49][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 121 bits (304), Expect = 2e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 239 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 297
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 298 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 357
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 358 KALRKLRHPNRNSILKEYI 376
[50][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 121 bits (304), Expect = 2e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 278 EMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 336
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 396
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 397 KALRKLRHPNRNSILKEYI 415
[51][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 121 bits (304), Expect = 2e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 278 EMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 336
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 396
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 397 KALRKLRHPNRNSILKEYI 415
[52][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 121 bits (304), Expect = 2e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 278 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 336
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 396
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 397 KALRKLRHPNRNSILKEYI 415
[53][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 121 bits (304), Expect = 2e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 278 EMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 336
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 396
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 397 KALRKLRHPNRNSILKEYI 415
[54][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 121 bits (303), Expect = 3e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 240 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 298
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+Q+ K +++DLE VL +L+PRE+ V++ R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 299 DQVSKNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEA 358
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 359 KALRKLRHPNRNSVLKEYI 377
[55][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 120 bits (302), Expect = 4e-26
Identities = 60/139 (43%), Positives = 91/139 (65%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+AE G+S +++ ++ + P SLE IG ++ + I D EA+
Sbjct: 230 ELGREPTPEEIAEKMGISPEKVREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQAPA 289
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E+ +++ L +VL SL PRE++V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 290 EEASYALLREQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEA 349
Query: 134 CAFRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ YL
Sbjct: 350 KTLRKLRHPSRSKKLKDYL 368
[56][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 120 bits (302), Expect = 4e-26
Identities = 59/144 (40%), Positives = 98/144 (68%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE +S+++L +VL + + SLE+ + + + + + E+ E
Sbjct: 303 EIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPE 362
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E + K ++ DLE V++SL+PRE+ V+R R+G+DDGR+KTL+EIG++ V+RER+RQIE+
Sbjct: 363 EHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEA 422
Query: 134 CAFRKLKNKKRNKHLQQYLVSHPS 63
A RKL+ R+ L+ Y+++ PS
Sbjct: 423 KAIRKLRQPYRSSILRDYVLATPS 446
[57][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 323 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPE 381
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 382 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEA 441
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 442 KALRKLRHPNRNGVLKEYI 460
[58][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 333 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 391
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 392 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 451
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 452 KALRKLRHPNRNGVLKEYI 470
[59][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 313 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 371
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 372 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 431
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 432 KALRKLRHPNRNGVLKEYI 450
[60][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 297 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 355
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 356 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 415
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 416 KALRKLRHPNRNGVLKEYI 434
[61][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 302 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 360
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 361 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 420
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 421 KALRKLRHPNRNGVLKEYI 439
[62][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 312 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 370
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 371 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 430
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 431 KALRKLRHPNRNGVLKEYI 449
[63][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 306 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPE 364
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 365 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEA 424
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 425 KALRKLRHPNRNGVLKEYI 443
[64][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 313 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 371
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 372 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 431
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 432 KALRKLRHPNRNGVLKEYI 450
[65][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 341 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 399
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 400 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 459
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 460 KALRKLRHPNRNGVLKEYI 478
[66][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 320 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 378
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 379 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 438
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 439 KALRKLRHPNRNGVLKEYI 457
[67][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 119 bits (299), Expect = 8e-26
Identities = 59/139 (42%), Positives = 97/139 (69%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E R P +EE+A +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 241 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGENPE 299
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 300 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 359
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 360 KALRKLRHPNRNSILKEYI 378
[68][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 365 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 423
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 424 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 483
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 484 KALRKLRHPNRNGVLKEYI 502
[69][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 309 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 367
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 368 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 427
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 428 KALRKLRHPNRNGVLKEYI 446
[70][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 318 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 376
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 377 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 436
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 437 KALRKLRHPNRNGVLKEYI 455
[71][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 331 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 389
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 390 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 449
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 450 KALRKLRHPNRNGVLKEYI 468
[72][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 119 bits (299), Expect = 8e-26
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 322 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 380
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 381 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 440
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 441 KALRKLRHPNRNGVLKEYI 459
[73][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 119 bits (298), Expect = 1e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 280 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 338
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 339 QDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 398
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 399 KALRKLRHPNRNGVLKEYI 417
[74][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 119 bits (298), Expect = 1e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 280 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 338
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 339 QDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 398
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 399 KALRKLRHPNRNGVLKEYI 417
[75][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 119 bits (298), Expect = 1e-25
Identities = 59/137 (43%), Positives = 90/137 (65%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE +++++++ + P SL Q + + + E + D AE ++
Sbjct: 433 GRDPTTEEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSRTVEETLVDDHAEHPDDA 492
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
K +K+DLE VL++L+PRE+ V+R R+GMDDGR+KTL+EIG + V+RERIRQIE+ A
Sbjct: 493 TGKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKA 552
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL+ RN L++YL
Sbjct: 553 LRKLRQPSRNGILREYL 569
[76][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 119 bits (297), Expect = 1e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 258 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 316
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 317 QDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEA 376
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 377 KALRKLRHPNRNGVLKEYI 395
[77][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 119 bits (297), Expect = 1e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 255 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 313
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 314 QDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEA 373
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 374 KALRKLRHPNRNGVLKEYI 392
[78][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 119 bits (297), Expect = 1e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 255 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 313
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 314 QDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEA 373
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 374 KALRKLRHPNRNGVLKEYI 392
[79][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 119 bits (297), Expect = 1e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 256 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 314
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 315 QDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEA 374
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 375 KALRKLRHPNRNGVLKEYI 393
[80][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 119 bits (297), Expect = 1e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 259 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 317
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 318 QDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEA 377
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 378 KALRKLRHPNRNGVLKEYI 396
[81][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 119 bits (297), Expect = 1e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 256 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 314
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 315 QDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEA 374
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 375 KALRKLRHPNRNGVLKEYI 393
[82][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 119 bits (297), Expect = 1e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E E
Sbjct: 255 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPE 313
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 314 QDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEA 373
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 374 KALRKLRHPNRNGVLKEYI 392
[83][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 118 bits (296), Expect = 2e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + ++E E
Sbjct: 300 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPE 358
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 359 LDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 418
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 419 KALRKLRHPNRNGVLKEYI 437
[84][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 118 bits (296), Expect = 2e-25
Identities = 60/139 (43%), Positives = 98/139 (70%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + ++E E
Sbjct: 287 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPE 345
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 346 LDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 405
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 406 KALRKLRHPNRNGVLKEYI 424
[85][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 118 bits (296), Expect = 2e-25
Identities = 59/139 (42%), Positives = 91/139 (65%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A +S++R+ ++ + P SLE IG ++ + I D +A
Sbjct: 229 EKGREPTPEEIAREMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPA 288
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ LE+VL++L PRE++V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 289 EAASFMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEA 348
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 349 KALRKLRHPSRSKKLKDFL 367
[86][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 117 bits (294), Expect = 3e-25
Identities = 60/137 (43%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE L+ +++ +L + P SLE IG + + I D EA + E
Sbjct: 237 GREPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEH 296
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 297 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 356
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 357 LRKLRHPSRSKRLKDFL 373
[87][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 117 bits (294), Expect = 3e-25
Identities = 60/137 (43%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE L+ +++ +L + P SLE IG + + I D EA + E
Sbjct: 240 GREPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEH 299
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 300 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 359
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 360 LRKLRHPSRSKRLKDFL 376
[88][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 117 bits (294), Expect = 3e-25
Identities = 60/137 (43%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE L+ +++ +L + P SLE IG + + I D EA + E
Sbjct: 238 GREPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[89][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 117 bits (293), Expect = 4e-25
Identities = 60/139 (43%), Positives = 90/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A + ++R+ + + P SLE IG ++ + I D +A+
Sbjct: 222 ELGREPTPEEIAHEMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDEDAQAPA 281
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +++ LE+VL+SL PREK+V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 282 EAASFMLLREQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEA 341
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 342 KALRKLRHPSRSKKLKDYL 360
[90][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 117 bits (293), Expect = 4e-25
Identities = 58/139 (41%), Positives = 97/139 (69%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A +++++L + + + P SLE IG ++ + + I + + ET E
Sbjct: 265 ELGRKPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPE 323
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ K +++DLE VL++L RE+ V++ R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 324 DRVAKVLLREDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 383
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ RN L++Y+
Sbjct: 384 KALRKLRHPNRNSVLKEYI 402
[91][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 117 bits (293), Expect = 4e-25
Identities = 59/137 (43%), Positives = 91/137 (66%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AEA +S++R+ ++ + P SLE IG ++ + I D +A E
Sbjct: 238 GREPSPEEIAEAMEISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEA 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+K+ LE+VLD+L RE++V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+ A
Sbjct: 298 ASFMLLKEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R++ L+ +L
Sbjct: 358 LRKLRHPSRSRKLKDFL 374
[92][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 117 bits (293), Expect = 4e-25
Identities = 57/141 (40%), Positives = 96/141 (68%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE +S+++L +VL + + SLE+ + + + + + E+ E
Sbjct: 303 EIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPE 362
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E + K ++ DLE V++SL+PRE+ V+R R+G+DDGR+KTL+EIG++ V+RER+RQIE+
Sbjct: 363 EHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEA 422
Query: 134 CAFRKLKNKKRNKHLQQYLVS 72
A RKL+ R+ L+ Y+++
Sbjct: 423 KAIRKLRQPYRSSILRDYVLA 443
[93][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 117 bits (292), Expect = 5e-25
Identities = 59/137 (43%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ E
Sbjct: 200 GREPSPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSEH 259
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 260 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 319
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 320 LRKLRHPSRSKRLKDFL 336
[94][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 117 bits (292), Expect = 5e-25
Identities = 60/139 (43%), Positives = 90/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A + ++R+ + + P SLE IG ++ + I D +A
Sbjct: 249 ELGREPTPEEIAAVMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPA 308
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ LE+VL+SL PRE++V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 309 EAASFTLLKEQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEA 368
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 369 KALRKLRHPSRSKKLKDYL 387
[95][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 117 bits (292), Expect = 5e-25
Identities = 60/139 (43%), Positives = 91/139 (65%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A +S++R+ ++ + P SLE IG ++ + I D +A
Sbjct: 228 ELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPS 287
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ LE+VL++L PRE++V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 288 EAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEA 347
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 348 KALRKLRHPSRSKKLKDYL 366
[96][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 117 bits (292), Expect = 5e-25
Identities = 60/139 (43%), Positives = 91/139 (65%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A +S++R+ ++ + P SLE IG ++ + I D +A
Sbjct: 233 ELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPS 292
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ LE+VL++L PRE++V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 293 EAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEA 352
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 353 KALRKLRHPSRSKKLKDYL 371
[97][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 116 bits (291), Expect = 7e-25
Identities = 59/137 (43%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE L+ +++ +L + P SLE IG + + I D +A + E
Sbjct: 235 GREPSPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEH 294
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 295 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 354
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 355 LRKLRHPSRSKRLKDFL 371
[98][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 116 bits (291), Expect = 7e-25
Identities = 61/139 (43%), Positives = 90/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+AE +S ++ +L + P SLE IG + + I D +A+
Sbjct: 221 ELGREPLPEEIAEQMDMSEDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAKPPA 280
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + +K LE+VLDSL PRE++V+R RFG+DDG+ +TL+E+G+ GV+RERIRQIE+
Sbjct: 281 DAAAFELLKGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQIEA 340
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 341 KALRKLRHPMRSKRLKDYL 359
[99][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 116 bits (291), Expect = 7e-25
Identities = 58/137 (42%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA++ +
Sbjct: 238 GREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[100][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 116 bits (291), Expect = 7e-25
Identities = 58/137 (42%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA++ +
Sbjct: 3 GREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDH 62
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 63 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 122
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 123 LRKLRHPSRSKRLKDFL 139
[101][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 116 bits (291), Expect = 7e-25
Identities = 59/137 (43%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE L+ +++ +L + P SLE IG + + I D +A + E
Sbjct: 238 GREPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[102][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 116 bits (290), Expect = 9e-25
Identities = 59/137 (43%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 236 GREPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[103][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 116 bits (290), Expect = 9e-25
Identities = 59/137 (43%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 236 GREPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[104][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 116 bits (290), Expect = 9e-25
Identities = 59/137 (43%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 236 GREPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[105][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 116 bits (290), Expect = 9e-25
Identities = 57/145 (39%), Positives = 97/145 (66%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+A+ +S+++L VL + + SLE+ + + + + + E+ E
Sbjct: 286 EIGRSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPE 345
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E + K ++ DLE V++SL+PRE+ V+R R+G+DDGR+KTL+EIG++ V+RER+RQIE+
Sbjct: 346 EHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEA 405
Query: 134 CAFRKLKNKKRNKHLQQYLVSHPSK 60
A RKL+ R+ L+ Y+ S+ ++
Sbjct: 406 KAIRKLRQPYRSSILRDYVASNSNE 430
[106][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 116 bits (290), Expect = 9e-25
Identities = 60/139 (43%), Positives = 90/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A LS++++ ++ + P SLE IG + + I D EA T
Sbjct: 238 ELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPA 297
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 298 DAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEA 357
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 358 KALRKLRHPSRSKRLKDFL 376
[107][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 116 bits (290), Expect = 9e-25
Identities = 59/137 (43%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 234 GREPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDH 293
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 294 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 353
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 354 LRKLRHPSRSKRLKDFL 370
[108][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 115 bits (289), Expect = 1e-24
Identities = 56/139 (40%), Positives = 93/139 (66%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ G+S ++ ++ + P SLE IG ++ + + DP+A+
Sbjct: 231 ELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPV 290
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E+ +++ L++VL +L RE++V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 291 EEASYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEA 350
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 351 KALRKLRHPSRSKKLKDFL 369
[109][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 115 bits (289), Expect = 1e-24
Identities = 58/139 (41%), Positives = 97/139 (69%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +EE+AE+ +++++L + + + P SLE IG ++ + + I + + E +
Sbjct: 263 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPD 321
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL+EIG++ V+RERIRQIE+
Sbjct: 322 QDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 381
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A KL++ RN L++Y+
Sbjct: 382 KALLKLRHPNRNGVLKEYI 400
[110][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 115 bits (289), Expect = 1e-24
Identities = 57/137 (41%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA++ +
Sbjct: 238 GREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE V+D+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVIDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[111][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 115 bits (288), Expect = 2e-24
Identities = 59/137 (43%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE L+ ++ +L + P SLE IG + + I D +A + E
Sbjct: 237 GREPTPEEIAEDMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEH 296
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 297 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 356
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 357 LRKLRHPSRSKRLKDFL 373
[112][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 115 bits (288), Expect = 2e-24
Identities = 57/138 (41%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE +S K+ +L + SLE+ +G ++N K ++IAD EA E+
Sbjct: 136 GREPSIEEIAEEMNISEKKAKVLLEIVQGIVSLEEPVGEDENGKLGDIIADKEAVDPVEE 195
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIG-EMLGVSRERIRQIESC 132
L +K+ +++VL +L PRE++V+R RFG+DDG+++TL+E+G E+ G+SRER+RQIE+
Sbjct: 196 LESMLLKEQVDEVLSTLAPREEKVLRLRFGLDDGKIRTLEEVGKELGGISRERVRQIETK 255
Query: 131 AFRKLKNKKRNKHLQQYL 78
A ++L++ R++ L+++L
Sbjct: 256 ALKRLRHPNRSRRLKEFL 273
[113][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 236 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[114][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 236 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[115][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 238 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[116][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 236 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[117][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 238 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[118][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 236 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[119][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 238 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[120][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 238 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[121][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 238 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[122][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 238 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[123][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 238 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[124][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 238 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 297
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 298 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 357
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 358 LRKLRHPSRSKRLKDFL 374
[125][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 115 bits (287), Expect = 2e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 236 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[126][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 114 bits (286), Expect = 3e-24
Identities = 59/139 (42%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A LS++++ ++ + P SLE IG + + I D EA
Sbjct: 238 ELGREPSPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPA 297
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 298 DAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEA 357
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 358 KALRKLRHPSRSKRLKDFL 376
[127][TOP]
>UniRef100_A8ETJ7 RNA polymerase sigma factor n=1 Tax=Arcobacter butzleri RM4018
RepID=A8ETJ7_ARCB4
Length = 626
Score = 114 bits (286), Expect = 3e-24
Identities = 60/142 (42%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG+ PD EE+A+ GL + ++ V+ K P SLE IG +++ K + + D +A T
Sbjct: 485 ENGKEPDIEEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDEDGKFGDFVPDEKAPTPI 544
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++K+ ++ ++++L LN RE+ VIR RFG M+D +TL+EIG+ L V+RER+RQIE
Sbjct: 545 DNIMKEDLQGQIDQILSQLNEREQAVIRMRFGLMEDASDRTLEEIGKELNVTRERVRQIE 604
Query: 137 SCAFRKLKNKKRNKHLQQYLVS 72
S A +KLK+ K K+L+ Y+ S
Sbjct: 605 SSAIKKLKHPKVGKNLKNYVES 626
[128][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 114 bits (286), Expect = 3e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 236 GREPTPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[129][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 114 bits (286), Expect = 3e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GREPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[130][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 114 bits (286), Expect = 3e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ VL + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[131][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 114 bits (286), Expect = 3e-24
Identities = 59/137 (43%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EEVAE L+ +++ +L + P SLE IG + + I D +A +
Sbjct: 235 GREPSPEEVAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDA 294
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 295 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 354
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 355 LRKLRHPSRSKRLKDFL 371
[132][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 114 bits (285), Expect = 3e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[133][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 114 bits (285), Expect = 3e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[134][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 114 bits (285), Expect = 3e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[135][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 114 bits (285), Expect = 3e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 205 GRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 264
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 265 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 324
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 325 LRKLRHPSRSKRLKDFM 341
[136][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 114 bits (285), Expect = 3e-24
Identities = 59/139 (42%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A LS++++ ++ + P SLE IG + + I D EA
Sbjct: 235 ELGREPAPEEIAAEMDLSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPA 294
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 295 DAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEA 354
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 355 KALRKLRHPSRSKRLKDFL 373
[137][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
RepID=C2C209_LISGR
Length = 389
Score = 114 bits (285), Expect = 3e-24
Identities = 58/137 (42%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA + +
Sbjct: 252 GRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDH 311
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G + GV+RERIRQIE+ A
Sbjct: 312 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKA 371
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 372 LRKLRHPSRSKQLKDFL 388
[138][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 114 bits (285), Expect = 3e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+AE +S ++ ++ + P SLE IG + + I D +A + +
Sbjct: 240 GREPTPEEIAEEMDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDH 299
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 300 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 359
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 360 LRKLRHPSRSKRLKDFL 376
[139][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GBZ7_9FIRM
Length = 372
Score = 114 bits (285), Expect = 3e-24
Identities = 57/139 (41%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +E+A +S +R+ +L + P SLE IG + + I D + +
Sbjct: 233 ELGREPAPDEIAHVMNISEERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDVQAPA 292
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E + +K+ L+ VL++L PREK+V+ RFG++DGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 293 EAAAFELLKEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEA 352
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 353 KALRKLRHPMRSKRLKDYL 371
[140][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 114 bits (285), Expect = 3e-24
Identities = 58/137 (42%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA + +
Sbjct: 236 GREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEGDSHLGDFIEDQEATSPADH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[141][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 114 bits (285), Expect = 3e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[142][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 114 bits (284), Expect = 5e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[143][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 114 bits (284), Expect = 5e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[144][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 114 bits (284), Expect = 5e-24
Identities = 58/139 (41%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +E+A+ G+S+ ++ ++ + P SLE IG ++ + I D +A
Sbjct: 220 ELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPA 279
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 280 EAAAFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 339
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 340 KALRKLRHPSRSKKLKDYL 358
[145][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 114 bits (284), Expect = 5e-24
Identities = 55/139 (39%), Positives = 91/139 (65%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENGR P DEE+A+A L+++++ ++ T P SLE +G ++ + + + D + E
Sbjct: 261 ENGREPSDEELAQALDLTVEKVRSIRKTSMEPVSLETPVGQEEDSQLGDFLPDEKLEAPS 320
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ Q +++ + +VLD L REK+V++ RFG++DG +TL+E+G+ GV+RERIRQIE
Sbjct: 321 DAASHQMLREQVAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEV 380
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ + K L+ YL
Sbjct: 381 KALRKLRHPRFGKKLRDYL 399
[146][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 114 bits (284), Expect = 5e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[147][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 114 bits (284), Expect = 5e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[148][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 114 bits (284), Expect = 5e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 230 GRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 289
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 290 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 349
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 350 LRKLRHPSRSKRLKDFM 366
[149][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 114 bits (284), Expect = 5e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[150][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 114 bits (284), Expect = 5e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[151][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 114 bits (284), Expect = 5e-24
Identities = 57/137 (41%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D EA++ +
Sbjct: 231 GRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 351 LRKLRHPSRSKRLKDFM 367
[152][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 113 bits (283), Expect = 6e-24
Identities = 59/139 (42%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ LS ++ ++ + P SLE IG + + I D EA
Sbjct: 236 ELGREPTPEEIAKEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPA 295
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 296 DAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEA 355
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 356 KALRKLRHPSRSKRLKDFL 374
[153][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 113 bits (283), Expect = 6e-24
Identities = 57/137 (41%), Positives = 87/137 (63%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ ++ ++ +L + P SLE IG + + I D +A + EE
Sbjct: 232 GREPTPEEIGAEMDMNTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEEH 291
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 292 ASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 351
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 352 LRKLRHPSRSKQLKDFL 368
[154][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 113 bits (283), Expect = 6e-24
Identities = 57/137 (41%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+A+ L+ +++ +L + P SLE IG + + I D +A ++
Sbjct: 227 GREPSPEEIAKEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDA 286
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 287 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 346
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 347 LRKLRHPSRSKRLKDFL 363
[155][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 113 bits (283), Expect = 6e-24
Identities = 56/137 (40%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D +A++ +
Sbjct: 229 GRDPSPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAQSPADH 288
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 289 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 348
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 349 LRKLRHPSRSKRLKDFM 365
[156][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 113 bits (283), Expect = 6e-24
Identities = 60/139 (43%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A LS +++ +L + P SLE IG ++ + I D +A
Sbjct: 233 ELGRDPKPEEIAAEMDLSEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPA 292
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L +VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 293 EAAAFSLLKEQLVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEA 352
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 353 KALRKLRHPSRSKKLKDYL 371
[157][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
J2-071 RepID=UPI0000F53BBC
Length = 374
Score = 113 bits (282), Expect = 8e-24
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D +A + +
Sbjct: 237 GRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDH 296
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G + GV+RERIRQIE+ A
Sbjct: 297 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKA 356
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 357 LRKLRHPSRSKQLKDFL 373
[158][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 113 bits (282), Expect = 8e-24
Identities = 58/137 (42%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ L +++ +L + P SLE IG + + I D EA + E
Sbjct: 232 GREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEH 291
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 292 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 351
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 352 LRKLRHPSRSKQLKDFL 368
[159][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 113 bits (282), Expect = 8e-24
Identities = 58/139 (41%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ L+ ++ ++ + P SLE IG + + I D +A
Sbjct: 186 EIGREPTPEEIAKEMDLTPDKVREIMKIAQEPVSLETPIGEENDSNLGDFIEDHDAPAPA 245
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E + +K+ LE+VLD+L RE+ V+R RFGMDDGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 246 EAAAYELLKEQLEEVLDTLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEA 305
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ ++
Sbjct: 306 KALRKLRHPSRSKRLKDFM 324
[160][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 113 bits (282), Expect = 8e-24
Identities = 58/137 (42%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ L +++ +L + P SLE IG + + I D EA + E
Sbjct: 232 GREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEH 291
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 292 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 351
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 352 LRKLRHPSRSKQLKDFL 368
[161][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
RepID=RPOD_LISMO
Length = 374
Score = 113 bits (282), Expect = 8e-24
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D +A + +
Sbjct: 237 GRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDH 296
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G + GV+RERIRQIE+ A
Sbjct: 297 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKA 356
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 357 LRKLRHPSRSKQLKDFL 373
[162][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
Length = 374
Score = 113 bits (282), Expect = 8e-24
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D +A + +
Sbjct: 237 GRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDH 296
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G + GV+RERIRQIE+ A
Sbjct: 297 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKA 356
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 357 LRKLRHPSRSKQLKDFL 373
[163][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 112 bits (281), Expect = 1e-23
Identities = 59/137 (43%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EEV + LS ++ +L + P SLE IG + + I D EA +
Sbjct: 236 GREPTPEEVGKEMDLSPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDA 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKRLKDFL 372
[164][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 112 bits (281), Expect = 1e-23
Identities = 59/139 (42%), Positives = 87/139 (62%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A LS ++ ++ + P SLE IG + + I D EA
Sbjct: 237 ELGREPTPEEIAAEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPA 296
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 297 DAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEA 356
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 357 KALRKLRHPSRSKRLKDFL 375
[165][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 112 bits (281), Expect = 1e-23
Identities = 58/139 (41%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+AE L+ +++ ++ + P SLE IG + + I D +A
Sbjct: 237 ELGREPMPEEIAEKMDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPS 296
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 297 DAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEA 356
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 357 KALRKLRHPSRSKRLKDFL 375
[166][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 112 bits (281), Expect = 1e-23
Identities = 58/137 (42%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + K++ +L + P SLE IG + + I D +A + +
Sbjct: 244 GREPLPEEIGAEMDMPTKKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADH 303
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ MKK LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 304 AAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 363
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 364 LRKLRHPSRSKQLKDFL 380
[167][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 112 bits (280), Expect = 1e-23
Identities = 58/137 (42%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L ++ +L + P SLE IG + + I D EA + +
Sbjct: 243 GREPTPEEIGEEMELGPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDH 302
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 303 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 362
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 363 LRKLRHPSRSKRLKDFL 379
[168][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 112 bits (280), Expect = 1e-23
Identities = 59/139 (42%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ +S+ R+ ++ + P SLE IG ++ + I D +A
Sbjct: 227 ELGREPTPEEIAKEMEISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPA 286
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 287 EAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 346
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 347 KALRKLRHPSRSKKLKDYL 365
[169][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 112 bits (280), Expect = 1e-23
Identities = 57/137 (41%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EVAE +++ R+ ++ + P SLE IG + + I D EAE+ EE
Sbjct: 221 GREPTPAEVAEEMDIAVDRVIEIMKVAQEPVSLETPIGEEDDSHLGDFITDEEAESPEES 280
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+++ L+ +L++L RE++V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+ A
Sbjct: 281 ASFVLLREHLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKA 340
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ Y+
Sbjct: 341 LRKLRHPSRSKKLKDYI 357
[170][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 112 bits (280), Expect = 1e-23
Identities = 56/137 (40%), Positives = 87/137 (63%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ E L +++ +L + P SLE IG + + I D E ++ +
Sbjct: 232 GRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDH 291
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 292 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 351
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ ++
Sbjct: 352 LRKLRHPSRSKRLKDFM 368
[171][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 112 bits (280), Expect = 1e-23
Identities = 59/139 (42%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ L +++ +L + P SLE IG ++ + I D +A
Sbjct: 233 EFGREPKPEEIAKEMDLPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPA 292
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L +VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 293 EAAAFSLLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEA 352
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 353 KALRKLRHPSRSKKLKDYL 371
[172][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
delbrueckii subsp. lactis RepID=Q71HU9_LACDL
Length = 167
Score = 112 bits (280), Expect = 1e-23
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P+ EE+A L +K++ VL + P SLE IG + + I D +A + E+
Sbjct: 30 GRDPEPEEIAAEMDLPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQH 89
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K L +VLD+L RE+ V+R RFG+DDG +TL+E+G + GV+RERIRQIE+ A
Sbjct: 90 AASEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKA 149
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+ L+ +L
Sbjct: 150 LRKLRHPSRSNQLRDFL 166
[173][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 112 bits (280), Expect = 1e-23
Identities = 56/137 (40%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+A+ + + R+ ++ + P SLE IG ++ + I D +A +
Sbjct: 236 GREPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPADA 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+K+ LE VLD+L PRE++V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+ A
Sbjct: 296 ASFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R++ L+ +L
Sbjct: 356 LRKLRHPSRSRKLKDFL 372
[174][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 112 bits (280), Expect = 1e-23
Identities = 56/137 (40%), Positives = 87/137 (63%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + E+
Sbjct: 279 GREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDH 338
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 339 ASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 398
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 399 LRKLRHPSRSKQLKDFL 415
[175][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 112 bits (280), Expect = 1e-23
Identities = 56/137 (40%), Positives = 87/137 (63%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + E+
Sbjct: 215 GREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDH 274
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 275 ASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 334
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 335 LRKLRHPSRSKQLKDFL 351
[176][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 112 bits (280), Expect = 1e-23
Identities = 56/137 (40%), Positives = 87/137 (63%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + E+
Sbjct: 279 GREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDH 338
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 339 ASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 398
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 399 LRKLRHPSRSKQLKDFL 415
[177][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 112 bits (280), Expect = 1e-23
Identities = 56/137 (40%), Positives = 87/137 (63%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + E+
Sbjct: 285 GREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDH 344
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 345 ASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 404
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 405 LRKLRHPSRSKQLKDFL 421
[178][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 112 bits (280), Expect = 1e-23
Identities = 56/137 (40%), Positives = 87/137 (63%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + E+
Sbjct: 279 GREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDH 338
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 339 ASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 398
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 399 LRKLRHPSRSKQLKDFL 415
[179][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
RepID=B0MPW5_9FIRM
Length = 358
Score = 112 bits (280), Expect = 1e-23
Identities = 55/139 (39%), Positives = 90/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG P +E+A+ G+++ R+ +L + P SLE IG ++ + I D +A
Sbjct: 219 ENGHEPTPQEIADRLGITVDRVREILRISQDPVSLETPIGEEEDSHLGDFIPDEDAPAPA 278
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E + +K+ L ++L +L PRE++V+R RFG++DGR +TL+E+G+ V+RERIRQIE+
Sbjct: 279 EAASRTLLKEQLSEILGTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFDVTRERIRQIEA 338
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 339 KALRKLRHPSRSKKLKDFL 357
[180][TOP]
>UniRef100_A9RG56 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RG56_PHYPA
Length = 581
Score = 112 bits (280), Expect = 1e-23
Identities = 57/142 (40%), Positives = 96/142 (67%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
+ GR DEEVA A G+S+++L +L + + P S++Q IG +++L E++AD +A+
Sbjct: 439 DQGRQARDEEVATAVGISVEKLDFILKSARLPASMDQLIGRDKDLPLWEMVADKGFNSAD 498
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ L + +K+D++ VL +L+P E++V+R RFG+DD + TL++IG V+RERIRQIE
Sbjct: 499 DFLTNEVLKQDIDGVLQTLSPTEREVLRLRFGLDDAQSMTLKDIGIFFKVTRERIRQIEV 558
Query: 134 CAFRKLKNKKRNKHLQQYLVSH 69
A RKL++ R LQ ++ ++
Sbjct: 559 RALRKLRHPTRRNILQGHVKNY 580
[181][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 112 bits (279), Expect = 2e-23
Identities = 57/139 (41%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ + ++++ +L + P SLE IG ++ + I D +A
Sbjct: 278 EKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPS 337
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L +VLDSLN REK+V++ RFG++DGR +TL+E+G+ V+RERIRQIE+
Sbjct: 338 EAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEA 397
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 398 KALRKLRHPSRSKKLKDFL 416
[182][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 112 bits (279), Expect = 2e-23
Identities = 57/139 (41%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ + ++++ +L + P SLE IG ++ + I D +A
Sbjct: 272 EKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPS 331
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L +VLDSLN REK+V++ RFG++DGR +TL+E+G+ V+RERIRQIE+
Sbjct: 332 EAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEA 391
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 392 KALRKLRHPSRSKKLKDFL 410
[183][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 112 bits (279), Expect = 2e-23
Identities = 57/139 (41%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ + ++++ ++ + P SLE IG ++ + I D +A
Sbjct: 219 ELGREPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPS 278
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 279 EAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 338
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 339 KALRKLRHPSRSKKLKDYL 357
[184][TOP]
>UniRef100_Q9S1D0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori
RepID=Q9S1D0_HELPY
Length = 675
Score = 112 bits (279), Expect = 2e-23
Identities = 60/140 (42%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K + + D ++
Sbjct: 534 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIASSI 593
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++++ +K +E VLD LN REK VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 594 DHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIE 653
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KL++ + + L+ YL
Sbjct: 654 SSAIKKLRSPQYGRILRNYL 673
[185][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 112 bits (279), Expect = 2e-23
Identities = 57/139 (41%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ + ++++ ++ + P SLE IG ++ + I D +A
Sbjct: 219 ELGREPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPS 278
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 279 EAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 338
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 339 KALRKLRHPSRSKKLKDYL 357
[186][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
RepID=C7CSZ1_ENTFA
Length = 368
Score = 112 bits (279), Expect = 2e-23
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ L +++ +L + P SLE IG + + I D +A + E
Sbjct: 231 GREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 351 LRKLRHPSRSKQLKDFL 367
[187][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 112 bits (279), Expect = 2e-23
Identities = 59/139 (42%), Positives = 87/139 (62%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EEVA+ + + ++ ++ + P SLE IG ++ + I D EA
Sbjct: 222 ELGREPQPEEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPA 281
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 282 EAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 341
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 342 KALRKLRHPSRSKKLKDYL 360
[188][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
RepID=A5I618_CLOBH
Length = 361
Score = 112 bits (279), Expect = 2e-23
Identities = 59/139 (42%), Positives = 87/139 (62%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EEVA+ + + ++ ++ + P SLE IG ++ + I D EA
Sbjct: 222 ELGREPQPEEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPA 281
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 282 EAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 341
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 342 KALRKLRHPSRSKKLKDYL 360
[189][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
RepID=RPOD_ENTFA
Length = 368
Score = 112 bits (279), Expect = 2e-23
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ L +++ +L + P SLE IG + + I D +A + E
Sbjct: 231 GREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 351 LRKLRHPSRSKQLKDFL 367
[190][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R970_THETN
Length = 372
Score = 111 bits (278), Expect = 2e-23
Identities = 58/139 (41%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ G+ +++ +L + P SLE IG ++ + I D +A
Sbjct: 233 ELGREPTPEELAKEMGMPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPA 292
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 293 EAAAYTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 352
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 353 KALRKLRHPSRSKKLKDFL 371
[191][TOP]
>UniRef100_B6JPJ0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori P12
RepID=B6JPJ0_HELP2
Length = 680
Score = 111 bits (278), Expect = 2e-23
Identities = 60/140 (42%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K + + D ++
Sbjct: 539 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSI 598
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++++ +K +E VLD LN REK VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 599 DHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIE 658
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KL++ + + L+ YL
Sbjct: 659 SSAIKKLRSPQYGRILRNYL 678
[192][TOP]
>UniRef100_B5Z9M1 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori G27
RepID=B5Z9M1_HELPG
Length = 682
Score = 111 bits (278), Expect = 2e-23
Identities = 60/140 (42%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K + + D ++
Sbjct: 541 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSI 600
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++++ +K +E VLD LN REK VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 601 DHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIE 660
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KL++ + + L+ YL
Sbjct: 661 SSAIKKLRSPQYGRILRNYL 680
[193][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 111 bits (278), Expect = 2e-23
Identities = 55/137 (40%), Positives = 89/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+++ ++ +++ +L + P SLE IG + + I D +A ++
Sbjct: 224 GREPTPEEISKEMEITPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATAPQDA 283
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 284 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 343
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 344 LRKLRHPSRSKRLKDFL 360
[194][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 111 bits (278), Expect = 2e-23
Identities = 58/139 (41%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ + ++R+ ++ + P SLE IG ++ + I D +A
Sbjct: 232 EYGREPMPEEIAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPA 291
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ LE+VL++L RE +V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 292 EAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEA 351
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 352 KALRKLRHPSRSKKLKDYL 370
[195][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 111 bits (278), Expect = 2e-23
Identities = 58/139 (41%), Positives = 87/139 (62%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ + + ++ ++ + P SLE IG ++ + I D EA
Sbjct: 229 ELGREPQPEEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPA 288
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 289 EAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 348
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 349 KALRKLRHPSRSKKLKDYL 367
[196][TOP]
>UniRef100_C9AAM5 RNA polymerase sigma-43 factor n=3 Tax=Enterococcus casseliflavus
RepID=C9AAM5_ENTCA
Length = 368
Score = 111 bits (278), Expect = 2e-23
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ L +++ +L + P SLE IG + + I D +A + E
Sbjct: 231 GREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 351 LRKLRHPSRSKQLKDFL 367
[197][TOP]
>UniRef100_C8ZYV7 RNA polymerase sigma-43 factor n=1 Tax=Enterococcus gallinarum EG2
RepID=C8ZYV7_ENTGA
Length = 368
Score = 111 bits (278), Expect = 2e-23
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ L +++ +L + P SLE IG + + I D +A + E
Sbjct: 231 GREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEH 290
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 291 AAYELLKEQLEDVLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKA 350
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 351 LRKLRHPSRSKQLKDFL 367
[198][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 111 bits (278), Expect = 2e-23
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + +
Sbjct: 243 GREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADH 302
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ MKK LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 303 AAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 362
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 363 LRKLRHPSRSKQLKDFL 379
[199][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 111 bits (278), Expect = 2e-23
Identities = 58/139 (41%), Positives = 87/139 (62%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ + + ++ ++ + P SLE IG ++ + I D EA
Sbjct: 229 ELGREPQPEEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPA 288
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 289 EAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 348
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 349 KALRKLRHPSRSKKLKDYL 367
[200][TOP]
>UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V564_9FIRM
Length = 383
Score = 111 bits (278), Expect = 2e-23
Identities = 57/139 (41%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ G+++ R+ ++ + P SLE IG ++ + I D A
Sbjct: 244 ELGRDPHPEEIAKEMGITVARVHEIMKIAQEPVSLETPIGEEEDSHLGDFIEDEAAPAPA 303
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +++ LE+VL++L REK V+R RFG++DGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 304 EAASFMLLREQLEEVLETLTDREKNVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEA 363
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 364 KALRKLRHPSRSKVLRDFL 382
[201][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 111 bits (278), Expect = 2e-23
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + +
Sbjct: 243 GREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADH 302
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ MKK LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 303 AAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 362
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 363 LRKLRHPSRSKQLKDFL 379
[202][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 111 bits (278), Expect = 2e-23
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + +
Sbjct: 243 GREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADH 302
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ MKK LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 303 AAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 362
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 363 LRKLRHPSRSKQLKDFL 379
[203][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
RepID=A5VJI3_LACRD
Length = 380
Score = 111 bits (278), Expect = 2e-23
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + +
Sbjct: 243 GREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADH 302
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ MKK LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 303 AAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 362
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 363 LRKLRHPSRSKQLKDFL 379
[204][TOP]
>UniRef100_B9Y1K0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori B128
RepID=B9Y1K0_HELPY
Length = 679
Score = 111 bits (278), Expect = 2e-23
Identities = 60/140 (42%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K + + D ++
Sbjct: 538 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSI 597
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++++ +K +E VLD LN REK VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 598 DHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIE 657
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KL++ + + L+ YL
Sbjct: 658 SSAIKKLRSPQYGRILRNYL 677
[205][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 111 bits (278), Expect = 2e-23
Identities = 58/139 (41%), Positives = 87/139 (62%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A L+ +++ + + P SLE IG + + I D EA
Sbjct: 229 ELGREPTPEEIAAEMDLTPEKVREIQKIAQEPVSLETPIGEEDDSHLGDFIPDDEAPAPA 288
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 289 DAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEA 348
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 349 KALRKLRHPSRSKRLKDFL 367
[206][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XRX4_LACRE
Length = 380
Score = 111 bits (278), Expect = 2e-23
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + +
Sbjct: 243 GREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADH 302
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ MKK LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 303 AAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 362
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 363 LRKLRHPSRSKQLKDFL 379
[207][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 111 bits (278), Expect = 2e-23
Identities = 58/139 (41%), Positives = 87/139 (62%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ + + ++ ++ + P SLE IG ++ + I D EA
Sbjct: 229 ELGREPQPEEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPA 288
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 289 EAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 348
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 349 KALRKLRHPSRSKKLKDYL 367
[208][TOP]
>UniRef100_P55993 RNA polymerase sigma factor rpoD n=1 Tax=Helicobacter pylori
RepID=RPOD_HELPY
Length = 671
Score = 111 bits (278), Expect = 2e-23
Identities = 60/140 (42%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K + + D ++
Sbjct: 530 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSI 589
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++++ +K +E VLD LN REK VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 590 DHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIE 649
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KL++ + + L+ YL
Sbjct: 650 SSAIKKLRSPQYGRILRNYL 669
[209][TOP]
>UniRef100_UPI0001853CA1 RNA polymerase sigma factor RpoD n=1 Tax=Helicobacter pylori
HPKX_438_AG0C1 RepID=UPI0001853CA1
Length = 319
Score = 111 bits (277), Expect = 3e-23
Identities = 60/140 (42%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K + + D ++
Sbjct: 178 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSI 237
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++++ +K +E VLD LN REK VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 238 DHIMREDLKVQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIE 297
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KL++ + + L+ YL
Sbjct: 298 SSAIKKLRSPQYGRILRNYL 317
[210][TOP]
>UniRef100_B2URS0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori Shi470
RepID=B2URS0_HELPS
Length = 661
Score = 111 bits (277), Expect = 3e-23
Identities = 60/140 (42%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K + + D ++
Sbjct: 520 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSI 579
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++++ +K +E VLD LN REK VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 580 DHIMREDLKVQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIE 639
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KL++ + + L+ YL
Sbjct: 640 SSAIKKLRSPQYGRILRNYL 659
[211][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
RepID=A5N6R2_CLOK5
Length = 354
Score = 111 bits (277), Expect = 3e-23
Identities = 59/139 (42%), Positives = 87/139 (62%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EEVA+ + + ++ ++ + P SLE IG ++ + I D EA
Sbjct: 215 ELGREPHAEEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPA 274
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 275 EAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 334
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 335 KALRKLRHPSRSKKLKDYL 353
[212][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
RepID=B2GBZ9_LACF3
Length = 380
Score = 111 bits (277), Expect = 3e-23
Identities = 57/137 (41%), Positives = 85/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + +
Sbjct: 243 GREPLPEEIGAEMDMDTQKVRDILKISQEPVSLETPIGEEDDSHLGDFIEDHDATSPADH 302
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ MKK LE VLD+L RE+ V+R RFG+DDGR +TL+E+G + GV+RERIRQIE+ A
Sbjct: 303 AAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKA 362
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 363 LRKLRHPSRSKQLKDFL 379
[213][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 111 bits (277), Expect = 3e-23
Identities = 56/139 (40%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ + + ++ ++ + P SLE IG ++ + I D EA
Sbjct: 239 ELGREPQPEEIAKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPA 298
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + +K+ L K+L++L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 299 DAAAFRMLKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 358
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 359 KALRKLRHPSRSKKLKDYL 377
[214][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 110 bits (276), Expect = 4e-23
Identities = 57/139 (41%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ LS ++ ++ + P SLE IG + + I D +A
Sbjct: 228 ELGREPTPEEIAKEMELSTDKVREIMKISQEPVSLETPIGEENDSNLGDFIEDQDALAPA 287
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ + +K+ LE VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RERIRQIE+
Sbjct: 288 DAASYELLKEQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEA 347
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 348 KALRKLRHPSRSKRLKDFL 366
[215][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 110 bits (276), Expect = 4e-23
Identities = 56/137 (40%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + E
Sbjct: 235 GREPMPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEH 294
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 295 AAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 354
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 355 LRKLRHPSRSKQLKDFL 371
[216][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
RepID=A4J7B9_DESRM
Length = 367
Score = 110 bits (276), Expect = 4e-23
Identities = 56/139 (40%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ +S +++ +L + P SLE IG ++ + I D +A
Sbjct: 228 ELGREPSPEEIAKEMDISGEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDADARAPA 287
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E+ +++ L++VL +L RE++V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 288 EEASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEA 347
Query: 134 CAFRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ YL
Sbjct: 348 KTLRKLRHPSRSKKLKDYL 366
[217][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
RepID=P77870_HELMO
Length = 333
Score = 110 bits (276), Expect = 4e-23
Identities = 57/139 (41%), Positives = 89/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P+ EE+A+ + + R+ ++ + P SLE IG ++ + I D +A
Sbjct: 194 EFGREPNPEEIAKEMDIPVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPA 253
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ LE+VL++L RE +V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 254 EAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEA 313
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ Y+
Sbjct: 314 KALRKLRHPSRSKKLKDYV 332
[218][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium papyrosolvens DSM 2782
RepID=C7IFS3_9CLOT
Length = 359
Score = 110 bits (276), Expect = 4e-23
Identities = 57/139 (41%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P +E+A+ G+S+ ++ ++ + P SLE IG ++ + I D +A
Sbjct: 220 ELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPA 279
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L RE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 280 EAAAFTLLKEQLIDVLDTLTAREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 339
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 340 KALRKLRHPSRSKKLKDYL 358
[219][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EU48_9BACT
Length = 387
Score = 110 bits (276), Expect = 4e-23
Identities = 53/137 (38%), Positives = 88/137 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+A+ G+++ R+ + + P SLE IG ++ + + + D + + +E
Sbjct: 250 GREPSAEEIAQEMGVTVDRVEEIQKIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPDEA 309
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
Q +++ LE++L+ L REK+V+R RFG++DG TL+E+G GV+RERIRQIE+ A
Sbjct: 310 AANQILREQLEEMLEDLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKA 369
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 370 LRKLRHPSRSKRLRDFL 386
[220][TOP]
>UniRef100_C3XP94 RNA polymerase sigma factor (Fragment) n=1 Tax=Helicobacter
winghamensis ATCC BAA-430 RepID=C3XP94_9HELI
Length = 615
Score = 110 bits (276), Expect = 4e-23
Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 1/139 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E G+ PD E++AE GL + ++ V+ K P SLE IG ++ K + + D A
Sbjct: 477 EEGKEPDLEKIAEEVGLPLDKVKNVIKITKEPISLEAPIGNGEDGKFGDFVEDKSAVGPM 536
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++K+ +K ++ VLD LN REK VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 537 DHILKEDLKSQIDDVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIE 596
Query: 137 SCAFRKLKNKKRNKHLQQY 81
S A +KLK+ K + L+ Y
Sbjct: 597 SSAIKKLKHPKVGRKLKNY 615
[221][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 110 bits (276), Expect = 4e-23
Identities = 56/137 (40%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + +++ +L + P SLE IG + + I D +A + E
Sbjct: 235 GREPMPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEH 294
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 295 AAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 354
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 355 LRKLRHPSRSKQLKDFL 371
[222][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 110 bits (276), Expect = 4e-23
Identities = 62/146 (42%), Positives = 90/146 (61%), Gaps = 9/146 (6%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIAD--------- 336
GR P EE+A+A ++++++ + P SL Q + N N + + D
Sbjct: 445 GRDPTHEELADAMEMTVEKIKQIKKASLVPISLSQTVN-NSNGEDKRTVEDTLIDDYTEH 503
Query: 335 PEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRE 156
PE ET K +K+DLE VL++LNPRE+ V+R R+G+DDGR+KTL+EIG + V+RE
Sbjct: 504 PEGETG-----KVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRE 558
Query: 155 RIRQIESCAFRKLKNKKRNKHLQQYL 78
RIRQIE+ A RKL+ RN L++YL
Sbjct: 559 RIRQIEAKALRKLRQPSRNGILREYL 584
[223][TOP]
>UniRef100_Q17VT9 RNA polymerase sigma factor n=1 Tax=Helicobacter acinonychis str.
Sheeba RepID=Q17VT9_HELAH
Length = 659
Score = 110 bits (275), Expect = 5e-23
Identities = 60/140 (42%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K + + D ++
Sbjct: 518 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSI 577
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++++ +K +E VLD LN REK VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 578 DHIMREDLKVQIEGVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIE 637
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KL++ + + L+ YL
Sbjct: 638 SSAIKKLRSPQYGRILRNYL 657
[224][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
Length = 372
Score = 110 bits (275), Expect = 5e-23
Identities = 56/137 (40%), Positives = 85/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P+ EE+A L +K++ L + P SLE IG + + I D +A + E+
Sbjct: 235 GRDPEPEEIAAEMDLPVKKVREALKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQH 294
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K L +VLD+L RE+ V+R RFG+DDG +TL+E+G + GV+RERIRQIE+ A
Sbjct: 295 AASEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKA 354
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+ L+ +L
Sbjct: 355 LRKLRHPSRSNKLRDFL 371
[225][TOP]
>UniRef100_A6Q2X9 RNA polymerase sigma factor n=1 Tax=Nitratiruptor sp. SB155-2
RepID=A6Q2X9_NITSB
Length = 608
Score = 110 bits (275), Expect = 5e-23
Identities = 59/140 (42%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E G+ PD E +AE G+ ++++ V+ K P SLE IG ++ K + I D A
Sbjct: 467 ETGKEPDVETIAEEVGMPVEKVKNVIKITKEPVSLEAPIGNEEDGKFGDFIEDKNAPNPL 526
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
E ++K+ MK +E++L++LN REK V+R RFG M D +TL+EIG+ L V+RER+RQIE
Sbjct: 527 EVIMKEDMKSKIEEILENLNEREKAVVRMRFGLMPDESDRTLEEIGKELNVTRERVRQIE 586
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KLK+ K + ++ Y+
Sbjct: 587 SSAIKKLKHPKVGRKIKNYI 606
[226][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
MC2 155 RepID=A0QVZ5_MYCS2
Length = 319
Score = 110 bits (275), Expect = 5e-23
Identities = 55/136 (40%), Positives = 89/136 (65%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR DEE+AE +G+ +++++ +L + P SL+ +G ++ + I D EA +AE
Sbjct: 182 GREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENA 241
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+I + + D+ VL +L+ RE+QVIR RFG+DDG+ +TL +IG++ G+SRER+RQIE
Sbjct: 242 VISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREV 301
Query: 128 FRKLKNKKRNKHLQQY 81
KL+N +R L+ Y
Sbjct: 302 MAKLRNGERADRLRSY 317
[227][TOP]
>UniRef100_Q4HQG2 RNA polymerase sigma factor n=1 Tax=Campylobacter upsaliensis
RM3195 RepID=Q4HQG2_CAMUP
Length = 619
Score = 110 bits (275), Expect = 5e-23
Identities = 57/140 (40%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
+NG+ PD ++A+ GLS+ ++ V+ K P SLE IG ++ K + + D + +
Sbjct: 476 KNGKEPDVNDIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEEDGKFGDFVEDKNSLSPM 535
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++K +K+ +++VLD LN REK VIR RFG ++D +TL+EIG+ L V+RER+RQIE
Sbjct: 536 DNILKDDLKEQIDEVLDQLNDREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIE 595
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KLK+ K + L+ Y+
Sbjct: 596 SSAIKKLKHPKVGRKLKNYI 615
[228][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
Length = 357
Score = 110 bits (275), Expect = 5e-23
Identities = 57/139 (41%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ G+ +++ ++ + P SLE IG ++ + I D +A
Sbjct: 218 ELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPA 277
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 278 EAAAFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 337
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 338 KALRKLRHPSRSKKLKDFL 356
[229][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PMA8_9THEO
Length = 357
Score = 110 bits (275), Expect = 5e-23
Identities = 57/139 (41%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ G+ +++ ++ + P SLE IG ++ + I D +A
Sbjct: 218 ELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPA 277
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 278 EAAAFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 337
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 338 KALRKLRHPSRSKKLKDFL 356
[230][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
RepID=B0K6Y0_THEPX
Length = 357
Score = 110 bits (275), Expect = 5e-23
Identities = 57/139 (41%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ G+ +++ ++ + P SLE IG ++ + I D +A
Sbjct: 218 ELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPA 277
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E +K+ L VLD+L PRE++V+R RFG+DDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 278 EAAAFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEA 337
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ +L
Sbjct: 338 KALRKLRHPSRSKKLKDFL 356
[231][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 110 bits (275), Expect = 5e-23
Identities = 56/137 (40%), Positives = 87/137 (63%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ ++ +++ +L + P SLE IG + + I D EA + +
Sbjct: 241 GREPTPEEIGAEMDVATEKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADS 300
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
Q +K+ LE VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 301 AAYQMLKEQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKA 360
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 361 LRKLRHPSRSKQLRDFL 377
[232][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 110 bits (275), Expect = 5e-23
Identities = 57/139 (41%), Positives = 87/139 (62%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A + ++R+ +L + P SLE IG ++ + I D
Sbjct: 243 ELGREPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPA 302
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E + +K+ L++VLD+L RE++V+R RFGMDDGR +TL+E+G+ V+RERIRQIE+
Sbjct: 303 EAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQIEA 362
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R++ L+ YL
Sbjct: 363 KALRKLRHPSRSRKLRDYL 381
[233][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 110 bits (274), Expect = 7e-23
Identities = 55/137 (40%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + ++ +L + P SLE IG + + I D +A + E+
Sbjct: 235 GREPTPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQH 294
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE+VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 295 ASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 354
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+ L+ +L
Sbjct: 355 LRKLRHPSRSNQLKDFL 371
[234][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
RepID=B8CXH1_HALOH
Length = 358
Score = 110 bits (274), Expect = 7e-23
Identities = 56/139 (40%), Positives = 86/139 (61%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+ E G+ +++ +L + P SLE IG ++ + I D +A
Sbjct: 219 EKGREPTPEEIGEEMGMPAEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDEDAPAPA 278
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+++ L+ VLD+L REK+V+ RFG++DGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 279 SAASFTLLREQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEA 338
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R+K L+ YL
Sbjct: 339 KALRKLRHPSRSKKLKDYL 357
[235][TOP]
>UniRef100_A7I1A4 RNA polymerase sigma factor n=1 Tax=Campylobacter hominis ATCC
BAA-381 RepID=A7I1A4_CAMHC
Length = 624
Score = 110 bits (274), Expect = 7e-23
Identities = 59/142 (41%), Positives = 92/142 (64%), Gaps = 1/142 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
ENG+ PD +A+ GLS+ ++ V+ K P SLE +G + K + + D +
Sbjct: 483 ENGKEPDITILAKEVGLSIDKIKQVIKITKEPISLEAPVGNEDDGKFGDFVEDKGTISPI 542
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+Q++K +K+ ++KVLD LN RE+ VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 543 DQILKNDLKEQIDKVLDQLNERERAVIRMRFGLLDDESDRTLEEIGKELSVTRERVRQIE 602
Query: 137 SCAFRKLKNKKRNKHLQQYLVS 72
+ A +KLK+ K + L++Y+ S
Sbjct: 603 ASAIKKLKHPKVGRDLKKYIES 624
[236][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 110 bits (274), Expect = 7e-23
Identities = 56/139 (40%), Positives = 88/139 (63%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ ++ ++ +L + P SLE IG ++ + I D EA
Sbjct: 224 ELGRDPSPEEIAKEMNITEDKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDHEARAPA 283
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
E+ +++ L++VL +L RE++V+R RFG+DDGR +TL+E+G+ GV+RERIRQIE+
Sbjct: 284 EEASFTLLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEA 343
Query: 134 CAFRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ YL
Sbjct: 344 KTLRKLRHPSRSKKLKDYL 362
[237][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 110 bits (274), Expect = 7e-23
Identities = 55/137 (40%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + ++ +L + P SLE IG + + I D +A + E+
Sbjct: 227 GREPTPEEIGAEMDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQH 286
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE+VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 287 ASYEMLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 346
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+ L+ +L
Sbjct: 347 LRKLRHPSRSNQLKDFL 363
[238][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 110 bits (274), Expect = 7e-23
Identities = 55/137 (40%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + ++ +L + P SLE IG + + I D +A + E+
Sbjct: 235 GREPTPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQH 294
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE+VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 295 ASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 354
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+ L+ +L
Sbjct: 355 LRKLRHPSRSNQLKDFL 371
[239][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C2E1K8_9LACO
Length = 364
Score = 110 bits (274), Expect = 7e-23
Identities = 55/137 (40%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + ++ +L + P SLE IG + + I D +A + E+
Sbjct: 227 GREPTPEEIGAEMDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQH 286
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE+VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 287 ASYEMLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 346
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+ L+ +L
Sbjct: 347 LRKLRHPSRSNQLKDFL 363
[240][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 110 bits (274), Expect = 7e-23
Identities = 55/137 (40%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ + ++ +L + P SLE IG + + I D +A + E+
Sbjct: 236 GREPTPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQH 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE+VLD+L RE+ V+R RFG+DDGR +TL+E+G++ GV+RERIRQIE+ A
Sbjct: 296 ASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+ L+ +L
Sbjct: 356 LRKLRHPSRSNQLKDFL 372
[241][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
RepID=A8U8N7_9LACT
Length = 373
Score = 110 bits (274), Expect = 7e-23
Identities = 56/137 (40%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ L +++ +L + P SLE IG + + I D +A + E
Sbjct: 236 GREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPAEN 295
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL+++G++ GV+RERIRQIE+ A
Sbjct: 296 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKA 355
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+K L+ +L
Sbjct: 356 LRKLRHPSRSKQLKDFL 372
[242][TOP]
>UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV68_SULAA
Length = 586
Score = 109 bits (273), Expect = 9e-23
Identities = 53/139 (38%), Positives = 90/139 (64%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ G+ +++ +L T + P SLE IG ++ + I D + E
Sbjct: 445 ELGREPTPEEIAKKVGMPAEKVKKILRTSQEPISLETPIGTDEETHLGDFIEDKSVLSPE 504
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
++K ++ L++VL +L+ RE+QV+R+RFG++D TL+++G+ GV+RERIRQIE+
Sbjct: 505 AHMLKNALRMQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEA 564
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R K+L+ ++
Sbjct: 565 KALRKLRHPHRAKYLKPFI 583
[243][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2V7P9_SULSY
Length = 590
Score = 109 bits (273), Expect = 9e-23
Identities = 54/139 (38%), Positives = 91/139 (65%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E GR P EE+A+ G+ ++ +L T + P SLE IG ++ + I D + E
Sbjct: 449 ELGREPTPEEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPE 508
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIES 135
+ ++KQ ++ L++VL +L+ RE+QV+R+RFG++D TL+++G+ GV+RERIRQIE+
Sbjct: 509 QHMLKQALRLQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEA 568
Query: 134 CAFRKLKNKKRNKHLQQYL 78
A RKL++ R K+L+ ++
Sbjct: 569 KALRKLRHPHRAKYLKPFI 587
[244][TOP]
>UniRef100_A5IMD4 RNA polymerase sigma factor n=2 Tax=Thermotoga RepID=A5IMD4_THEP1
Length = 407
Score = 109 bits (273), Expect = 9e-23
Identities = 54/141 (38%), Positives = 91/141 (64%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
Y ++G P EE+A+ G +++ +L K SLE IG +++ + +AD +
Sbjct: 259 YQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIAS 318
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
+++ ++ M+++LEKVL +L+PRE V+R R+G+ DG+ KTL+E+G+ V+RERIRQI
Sbjct: 319 PKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQI 378
Query: 140 ESCAFRKLKNKKRNKHLQQYL 78
E A RKL++ R+K+L+ L
Sbjct: 379 EVKALRKLRHPSRSKYLKSLL 399
[245][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 109 bits (273), Expect = 9e-23
Identities = 55/136 (40%), Positives = 88/136 (64%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR DEE+AE +G+ ++++ +L + P SL+ +G ++ + I D EA +AE
Sbjct: 182 GREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENA 241
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+I + + D+ VL +L+ RE+QVIR RFG+DDG+ +TL +IG++ G+SRER+RQIE
Sbjct: 242 VISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREV 301
Query: 128 FRKLKNKKRNKHLQQY 81
KL+N +R L+ Y
Sbjct: 302 MAKLRNGERADRLRSY 317
[246][TOP]
>UniRef100_O33992 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori
RepID=O33992_HELPY
Length = 680
Score = 109 bits (273), Expect = 9e-23
Identities = 59/140 (42%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Frame = -1
Query: 494 ENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAE 315
E G+ PD E VAE GLS+ ++ V+ K P SLE +G + + K + + D ++
Sbjct: 539 ETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSI 598
Query: 314 EQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLQEIGEMLGVSRERIRQIE 138
+ ++++ +K +E VLD LN REK VIR RFG +DD +TL+EIG+ L V+RER+RQIE
Sbjct: 599 DHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESERTLEEIGKELNVTRERVRQIE 658
Query: 137 SCAFRKLKNKKRNKHLQQYL 78
S A +KL++ + + L+ YL
Sbjct: 659 SSAIKKLRSPQYGRILRNYL 678
[247][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
13335 RepID=C8PAI1_9LACO
Length = 382
Score = 109 bits (273), Expect = 9e-23
Identities = 55/137 (40%), Positives = 86/137 (62%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P EE+ +S ++ +L + P SLE IG + + I D +A + E+
Sbjct: 245 GREPTPEEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQH 304
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
+ +K+ LE+VLD+L RE+ V+R RFG++DGR +TL+E+G + GV+RERIRQIE+ A
Sbjct: 305 ASYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQIEAKA 364
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL++ R+ L+ +L
Sbjct: 365 LRKLRHPSRSNQLKDFL 381
[248][TOP]
>UniRef100_C7IAE0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Thermotoga
naphthophila RKU-10 RepID=C7IAE0_9THEM
Length = 407
Score = 109 bits (273), Expect = 9e-23
Identities = 54/141 (38%), Positives = 91/141 (64%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
Y ++G P EE+A+ G +++ +L K SLE IG +++ + +AD +
Sbjct: 259 YQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIAS 318
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
+++ ++ M+++LEKVL +L+PRE V+R R+G+ DG+ KTL+E+G+ V+RERIRQI
Sbjct: 319 PKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQI 378
Query: 140 ESCAFRKLKNKKRNKHLQQYL 78
E A RKL++ R+K+L+ L
Sbjct: 379 EVKALRKLRHPSRSKYLKSLL 399
[249][TOP]
>UniRef100_C0CZA7 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0CZA7_9CLOT
Length = 405
Score = 109 bits (273), Expect = 9e-23
Identities = 53/137 (38%), Positives = 87/137 (63%)
Frame = -1
Query: 488 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 309
GR P + E+AEA G++ KR+ ++ T SLE +G + +AD ++ E+Q
Sbjct: 268 GRDPSNRELAEAVGMTEKRVEELIQTSGDTVSLETPVGDEDGSSLGDFVADNAGDSTEDQ 327
Query: 308 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCA 129
++++++ +L LN RE+QVI+ RFG+++GR TL+E+G V+RERIRQIE+ A
Sbjct: 328 AENVLLREEIDSMLQGLNERERQVIKLRFGLENGRPLTLEEVGRQFNVTRERIRQIETAA 387
Query: 128 FRKLKNKKRNKHLQQYL 78
RKL+N R+K ++ +L
Sbjct: 388 LRKLRNPVRSKKVRDFL 404
[250][TOP]
>UniRef100_P77994 RNA polymerase sigma factor rpoD n=1 Tax=Thermotoga maritima
RepID=RPOD_THEMA
Length = 399
Score = 109 bits (273), Expect = 9e-23
Identities = 54/141 (38%), Positives = 91/141 (64%)
Frame = -1
Query: 500 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 321
Y ++G P EE+A+ G +++ +L K SLE IG +++ + +AD +
Sbjct: 251 YQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIAS 310
Query: 320 AEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQI 141
+++ ++ M+++LEKVL +L+PRE V+R R+G+ DG+ KTL+E+G+ V+RERIRQI
Sbjct: 311 PKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQI 370
Query: 140 ESCAFRKLKNKKRNKHLQQYL 78
E A RKL++ R+K+L+ L
Sbjct: 371 EVKALRKLRHPSRSKYLKSLL 391