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[1][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
           DNA-directed RNA polymerase/ transcription factor n=1
           Tax=Vitis vinifera RepID=UPI000198388B
          Length = 578

 Score =  298 bits (762), Expect = 2e-79
 Identities = 149/172 (86%), Positives = 164/172 (95%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           SLSDQSRTIRLPFHM+EATYRVKEARKQLYSENGRHP++EEVAEATGLSMKRL+AVLLTP
Sbjct: 407 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTP 466

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           KAPRSL+QKIGINQNLKPSEVIADP+AETAEE LIKQFM++DLEKVL+SLNPREKQVIRW
Sbjct: 467 KAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRW 526

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           R+G++DGR K L EIGE++GVSRERIRQIESCAFRKLKNK+R    QQYLVS
Sbjct: 527 RYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578

[2][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PSL8_VITVI
          Length = 235

 Score =  298 bits (762), Expect = 2e-79
 Identities = 149/172 (86%), Positives = 164/172 (95%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           SLSDQSRTIRLPFHM+EATYRVKEARKQLYSENGRHP++EEVAEATGLSMKRL+AVLLTP
Sbjct: 64  SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTP 123

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           KAPRSL+QKIGINQNLKPSEVIADP+AETAEE LIKQFM++DLEKVL+SLNPREKQVIRW
Sbjct: 124 KAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRW 183

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           R+G++DGR K L EIGE++GVSRERIRQIESCAFRKLKNK+R    QQYLVS
Sbjct: 184 RYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 235

[3][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
           communis RepID=B9SDA3_RICCO
          Length = 569

 Score =  290 bits (742), Expect = 5e-77
 Identities = 145/172 (84%), Positives = 161/172 (93%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           SLSDQSRTIRLPFHM+EATYRVKEARKQLYSENGRHPDDEEVAEA GLSMKRLSAVLLTP
Sbjct: 398 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTP 457

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           KAPRSL+QKIG+N +LKPSEVIADPEAETAEE L+KQFMK+DLEKVL++LNPRE QV+RW
Sbjct: 458 KAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRW 517

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           RFG++DGRMK L EIGE++GVSRERIRQIES AFRKLKNKKR    +QYL++
Sbjct: 518 RFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569

[4][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
          Length = 572

 Score =  280 bits (715), Expect = 7e-74
 Identities = 140/172 (81%), Positives = 158/172 (91%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           SLSDQSR IRLPFHM+EATYRVKEARKQLYSE G+HP +EE+AEATGLSMKRL AVLL+P
Sbjct: 399 SLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSP 458

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K PRSL+QKIG+NQNLKPSEVIADPEA T+E+ LIK+FM++DL+KVLDSL  REKQVIRW
Sbjct: 459 KPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRW 518

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           RFGM+DGRMK L EIGEM+GVSRER+RQIES AFRKLKNKKRN+  QQYLV+
Sbjct: 519 RFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

[5][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
           Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
          Length = 572

 Score =  279 bits (713), Expect = 1e-73
 Identities = 140/172 (81%), Positives = 157/172 (91%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           SLSDQSR IRLPFHM+EATYRVKEARKQLYSE G+HP +EE+AEATGLSMKRL AVLL+P
Sbjct: 399 SLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSP 458

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K PRSL+QKIG+NQNLKPSEVIADPEA T E+ LIK+FM++DL+KVLDSL  REKQVIRW
Sbjct: 459 KPPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRW 518

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           RFGM+DGRMK L EIGEM+GVSRER+RQIES AFRKLKNKKRN+  QQYLV+
Sbjct: 519 RFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

[6][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
          Length = 564

 Score =  278 bits (712), Expect = 2e-73
 Identities = 140/172 (81%), Positives = 156/172 (90%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           SLSDQSRTIRLPFHM++ATYRVKEARKQ YSENGRHPDD+EVAEATGLSMKRLSAVLLTP
Sbjct: 393 SLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTP 452

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           KAPRSL+QK+G N +LK SEV ADPEAETAE+ L+K+FMKKDLE+VL+SL+PRE QVIRW
Sbjct: 453 KAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRW 512

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           RFGM+DGRMK L EIGE++GVSRERIRQIE  AFRKLKNK R    +QYLVS
Sbjct: 513 RFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 564

[7][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
          Length = 574

 Score =  278 bits (711), Expect = 2e-73
 Identities = 139/172 (80%), Positives = 158/172 (91%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           SLSDQSR IRLPFHM+EATYRVKEARKQLYSE G+HP +EE+AEATGLSMKRL AVLL+P
Sbjct: 401 SLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSP 460

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K PRSL++KIG+NQNLKPSEVIADPEA T+E+ LIK+FM++DL+KVLDSL  REKQVIRW
Sbjct: 461 KPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRW 520

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           RFGM+DGRMK L EIGEM+GVSRER+RQIES AFRKLKNKKRN+  QQYLV+
Sbjct: 521 RFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 572

[8][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
          Length = 575

 Score =  275 bits (703), Expect = 2e-72
 Identities = 139/172 (80%), Positives = 157/172 (91%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           SLSDQSR IRLPFHM+EATYRVKEARKQLYSE G+ P +EEVAEATGLSMKRL AVLL+P
Sbjct: 399 SLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEATGLSMKRLMAVLLSP 458

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K PRSL+QKIGIN NLKPSEVIADPEAET+E+ L+KQFM++DL+KVLDSL+ REKQVIRW
Sbjct: 459 KPPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQFMRQDLDKVLDSLSTREKQVIRW 518

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           RFGM+DGRMK L EIGE +GVSRER+RQI++ AFRKLKNKKRNS  QQYLV+
Sbjct: 519 RFGMEDGRMKTLQEIGETMGVSRERVRQIDTSAFRKLKNKKRNSHLQQYLVA 570

[9][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
          Length = 575

 Score =  274 bits (701), Expect = 3e-72
 Identities = 137/170 (80%), Positives = 156/170 (91%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           SLSDQSRTIRLPFHM+EATYRVKEARKQL SENG+ P++EEVAEATGLSMKRL+AVL+TP
Sbjct: 404 SLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTP 463

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           KAPRSL+QKIG N NLKPSEVIADPEAETAE+ L KQFM++DLEKVLD+L+ REKQVIRW
Sbjct: 464 KAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRW 523

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DGRMK L EIGE++GVSRERIRQIES AFRKL+NKK+    QQY+
Sbjct: 524 RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYM 573

[10][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
          Length = 567

 Score =  271 bits (694), Expect = 2e-71
 Identities = 135/172 (78%), Positives = 154/172 (89%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           SLSD+SRTIRLPFHM++ATYRVKEARKQLYSENGRHPDD+EVAEA GLSMKRLSAVLLTP
Sbjct: 396 SLSDRSRTIRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTP 455

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           KAPRSL+QK+G N +LK SEV ADPEAETAE+ L+K+FMKKDL KVL SL+PRE QV+RW
Sbjct: 456 KAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRW 515

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           RFGM+DGRMK L EIGE++GVSRER+RQIE  AFRKLKNK R    +QY+V+
Sbjct: 516 RFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMVA 567

[11][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=Q53JE7_ORYSJ
          Length = 563

 Score =  171 bits (433), Expect = 3e-41
 Identities = 91/172 (52%), Positives = 124/172 (72%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+S+QS+  RLP HM+EA+YRVKE  K+L  +  R P +EE+A  TG+ +KR+ A +  P
Sbjct: 390 SVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLP 449

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   SL+ KIG + ++   EV ADP AETAEE L +  MK+D+ K LD+L  RE+QV+  
Sbjct: 450 KYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTL 508

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           RFG++DGR++ L EIG  +GVSRERIRQIES AFRKL++KKR +  + YLV+
Sbjct: 509 RFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLVT 560

[12][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
           RepID=Q7XXT0_ORYSJ
          Length = 564

 Score =  171 bits (432), Expect = 5e-41
 Identities = 91/171 (53%), Positives = 123/171 (71%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+S+QS+  RLP HM+EA+YRVKE  K+L  +  R P +EE+A  TG+ +KR+ A +  P
Sbjct: 390 SVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLP 449

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   SL+ KIG + ++   EV ADP AETAEE L +  MK+D+ K LD+L  RE+QV+  
Sbjct: 450 KYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTL 508

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLV 47
           RFG++DGR++ L EIG  +GVSRERIRQIES AFRKL++KKR +  + YLV
Sbjct: 509 RFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559

[13][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q53KH8_ORYSJ
          Length = 564

 Score =  171 bits (432), Expect = 5e-41
 Identities = 91/171 (53%), Positives = 123/171 (71%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+S+QS+  RLP HM+EA+YRVKE  K+L  +  R P +EE+A  TG+ +KR+ A +  P
Sbjct: 390 SVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLP 449

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   SL+ KIG + ++   EV ADP AETAEE L +  MK+D+ K LD+L  RE+QV+  
Sbjct: 450 KYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTL 508

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLV 47
           RFG++DGR++ L EIG  +GVSRERIRQIES AFRKL++KKR +  + YLV
Sbjct: 509 RFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559

[14][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=B8AUZ3_ORYSI
          Length = 563

 Score =  171 bits (432), Expect = 5e-41
 Identities = 91/171 (53%), Positives = 123/171 (71%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+S+QS+  RLP HM+EA+YRVKE  K+L  +  R P +EE+A  TG+ +KR+ A +  P
Sbjct: 389 SVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLP 448

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   SL+ KIG + ++   EV ADP AETAEE L +  MK+D+ K LD+L  RE+QV+  
Sbjct: 449 KYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTL 507

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLV 47
           RFG++DGR++ L EIG  +GVSRERIRQIES AFRKL++KKR +  + YLV
Sbjct: 508 RFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 558

[15][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
           bicolor RepID=C6JRK5_SORBI
          Length = 238

 Score =  170 bits (430), Expect = 8e-41
 Identities = 92/171 (53%), Positives = 122/171 (71%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+S+QS+  RLP HM+EA+YRVKE  K+L  +  R P +EE+A  TG+ +KR+ A +  P
Sbjct: 64  SVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIALDTGMPIKRVEAAVNLP 123

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   SL+ KIG + ++   EV ADP AETAEE L +  MKKD+ K LD+L  REKQV+  
Sbjct: 124 KYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSMKKDVHKALDTLTTREKQVVVL 182

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLV 47
           RFG++D R++ L EIG ++GVSRERIRQIES AFRKL++KKR    + YLV
Sbjct: 183 RFGLEDDRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKRVKALKDYLV 233

[16][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
          Length = 539

 Score =  169 bits (429), Expect = 1e-40
 Identities = 91/171 (53%), Positives = 122/171 (71%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+S+QS+  RLP HM+EA+YRVKE  K+L  +  R P +EE+A  TG+ +KR+ A +  P
Sbjct: 365 SVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDTGIPIKRVEAAVNLP 424

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   SL+ KIG + ++   EV ADP AETAEE L +  MKKD+   LD+L  REKQV+  
Sbjct: 425 KYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSMKKDVHMALDTLTTREKQVVVL 483

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLV 47
           RFG++DGR++ L EIG ++GVSRERIRQIES AFRKL++KK+    + YLV
Sbjct: 484 RFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKALKDYLV 534

[17][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
           RepID=A9RXT3_PHYPA
          Length = 579

 Score =  169 bits (429), Expect = 1e-40
 Identities = 82/170 (48%), Positives = 125/170 (73%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S++DQSRTIRLP H+ E   R+ +A++ L  E+GR   +EEVAE  GL++++L +V+ + 
Sbjct: 403 SIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEEVAELVGLTVEKLKSVVKSA 462

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           KAP S+E+ IG + +    E++AD + ++ E+ ++KQ M++D+E VL +LNPRE++V+R 
Sbjct: 463 KAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQLMRQDIEGVLRTLNPREREVLRL 522

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR K L EIG++  V+RERIRQIE+ A RKL+   RNS  ++YL
Sbjct: 523 RFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNSILREYL 572

[18][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RTR4_PHYPA
          Length = 591

 Score =  164 bits (415), Expect = 4e-39
 Identities = 79/170 (46%), Positives = 121/170 (71%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSR IRLP H+ E   R+ +A+K L  E+GR P DEEVAE  G+S+++L  ++ + 
Sbjct: 417 AIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQPRDEEVAELVGMSVEKLKFIVKSA 476

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K P S+++ IG  ++    E+IAD + E+ E+ LI+Q +K+D++ VL +LNPRE++V+R 
Sbjct: 477 KTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQVLKQDVDGVLCTLNPREREVLRL 536

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDG+ + L EIG +  V+RERIRQIE+ A RKL+   RN   ++YL
Sbjct: 537 RFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLRQPSRNGVLREYL 586

[19][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q84Q84_ORYSJ
          Length = 540

 Score =  162 bits (410), Expect = 2e-38
 Identities = 83/170 (48%), Positives = 119/170 (70%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+ +Q++ IRLP HM EA+ RVKE R++L  +  R P +EE+A  TG+ ++R+ A +  P
Sbjct: 366 SVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLP 425

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   SL  K+G   ++   E+  D   ETAEE L +  MK+D+++ LD L+PRE+QVIR+
Sbjct: 426 KYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRY 484

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFGMDDGR++ L +IG ++GVSRERIRQIE  AFRKL+ +K+  + Q YL
Sbjct: 485 RFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534

[20][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
           Japonica Group RepID=Q10NF3_ORYSJ
          Length = 343

 Score =  162 bits (410), Expect = 2e-38
 Identities = 83/170 (48%), Positives = 119/170 (70%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+ +Q++ IRLP HM EA+ RVKE R++L  +  R P +EE+A  TG+ ++R+ A +  P
Sbjct: 169 SVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLP 228

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   SL  K+G   ++   E+  D   ETAEE L +  MK+D+++ LD L+PRE+QVIR+
Sbjct: 229 KYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRY 287

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFGMDDGR++ L +IG ++GVSRERIRQIE  AFRKL+ +K+  + Q YL
Sbjct: 288 RFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 337

[21][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=A3AGH1_ORYSJ
          Length = 497

 Score =  162 bits (410), Expect = 2e-38
 Identities = 83/170 (48%), Positives = 119/170 (70%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+ +Q++ IRLP HM EA+ RVKE R++L  +  R P +EE+A  TG+ ++R+ A +  P
Sbjct: 323 SVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLP 382

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   SL  K+G   ++   E+  D   ETAEE L +  MK+D+++ LD L+PRE+QVIR+
Sbjct: 383 KYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRY 441

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFGMDDGR++ L +IG ++GVSRERIRQIE  AFRKL+ +K+  + Q YL
Sbjct: 442 RFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 491

[22][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=A2XF08_ORYSI
          Length = 540

 Score =  162 bits (410), Expect = 2e-38
 Identities = 83/170 (48%), Positives = 119/170 (70%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+ +Q++ IRLP HM EA+ RVKE R++L  +  R P +EE+A  TG+ ++R+ A +  P
Sbjct: 366 SVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLP 425

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   SL  K+G   ++   E+  D   ETAEE L +  MK+D+++ LD L+PRE+QVIR+
Sbjct: 426 KYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRY 484

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFGMDDGR++ L +IG ++GVSRERIRQIE  AFRKL+ +K+  + Q YL
Sbjct: 485 RFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534

[23][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LQB0_PICSI
          Length = 495

 Score =  160 bits (406), Expect = 5e-38
 Identities = 82/170 (48%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +L++QSRTIRLP H++E+  R++ A + LY E+ R P  EEVAE  G+SM RL  V    
Sbjct: 324 ALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCS 383

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SL++ +G + + K SE++AD  +E+ E  + K+  KKDL++VLD+L  REKQV+R 
Sbjct: 384 RVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRL 443

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L E+GE   +SRER+RQIE  A RKL+   R    + YL
Sbjct: 444 RYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 493

[24][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LLW6_PICSI
          Length = 592

 Score =  160 bits (406), Expect = 5e-38
 Identities = 82/170 (48%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +L++QSRTIRLP H++E+  R++ A + LY E+ R P  EEVAE  G+SM RL  V    
Sbjct: 421 ALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCS 480

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SL++ +G + + K SE++AD  +E+ E  + K+  KKDL++VLD+L  REKQV+R 
Sbjct: 481 RVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRL 540

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L E+GE   +SRER+RQIE  A RKL+   R    + YL
Sbjct: 541 RYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 590

[25][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
           RepID=Q9L4T2_NOSP7
          Length = 389

 Score =  155 bits (392), Expect = 2e-36
 Identities = 78/170 (45%), Positives = 119/170 (70%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 220 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSA 279

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+Q+ K  +++DLEKVLDSL+PRE+ V+R 
Sbjct: 280 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRL 338

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 339 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 388

[26][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
           RepID=A0ZJC3_NODSP
          Length = 391

 Score =  155 bits (392), Expect = 2e-36
 Identities = 78/170 (45%), Positives = 119/170 (70%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 222 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSA 281

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+Q+ K  +++DLEKVLDSL+PRE+ V+R 
Sbjct: 282 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRL 340

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 341 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 390

[27][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
           RepID=RPOD_ANASP
          Length = 390

 Score =  155 bits (392), Expect = 2e-36
 Identities = 78/170 (45%), Positives = 119/170 (70%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 221 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSA 280

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+Q+ K  +++DLEKVLDSL+PRE+ V+R 
Sbjct: 281 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRL 339

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 340 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[28][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
          Length = 527

 Score =  153 bits (387), Expect = 7e-36
 Identities = 82/170 (48%), Positives = 118/170 (69%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+ +Q++ IRLP HM EA+ RVKE  ++L  E  R P +EE+A  TG++++R+ A +  P
Sbjct: 353 SVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTGMTIRRVEAAMSLP 412

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   S   K+G   ++   E++ D  AETAEE L +  MKKD+   LDSL+PR+KQV+R+
Sbjct: 413 KYSVSFTSKVGCT-DVTYQEIMPDTSAETAEETLHRWLMKKDVNTALDSLSPRKKQVMRY 471

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++ GR + L +IG+++GVSRERIRQIE  AFRKL++K R  + Q YL
Sbjct: 472 RFGIEGGRARTLHDIGQLMGVSRERIRQIELGAFRKLRSKNRLQSLQHYL 521

[29][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
           RepID=Q2JS52_SYNJA
          Length = 404

 Score =  152 bits (384), Expect = 2e-35
 Identities = 76/170 (44%), Positives = 118/170 (69%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  KQL  E GR P +EE+A    +++++L  +  + 
Sbjct: 235 AIADQSRTIRLPVHLYETISRIKKVTKQLSQELGRRPTEEEIATRMEITIEKLRFIAKSA 294

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + E ET EE++ K  +++DLE VL++L PRE+ V++ 
Sbjct: 295 QLPISLETPIGKEEDSRLGDFI-ESEGETPEERVAKVLLREDLESVLETLTPRERDVLKL 353

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 354 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 403

[30][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
           7420 RepID=B4W0Y8_9CYAN
          Length = 380

 Score =  152 bits (384), Expect = 2e-35
 Identities = 76/170 (44%), Positives = 119/170 (70%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A+   +++++L  +  + 
Sbjct: 211 AIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIADRMEMTIEKLRFIAKSA 270

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+Q+ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 271 QLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKNLLREDLESVLDTLSPRERDVLRL 329

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 330 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 379

[31][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
           RepID=B5VWQ7_SPIMA
          Length = 387

 Score =  152 bits (383), Expect = 2e-35
 Identities = 76/170 (44%), Positives = 118/170 (69%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 218 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSA 277

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+Q+ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 278 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRL 336

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 337 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 386

[32][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
           RepID=A0YTZ3_9CYAN
          Length = 391

 Score =  152 bits (383), Expect = 2e-35
 Identities = 76/170 (44%), Positives = 118/170 (69%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 222 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSA 281

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+Q+ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 282 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRL 340

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 341 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 390

[33][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
           bicolor RepID=C5WQ19_SORBI
          Length = 528

 Score =  152 bits (383), Expect = 2e-35
 Identities = 82/170 (48%), Positives = 118/170 (69%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+ +Q++ IRLP HM EA+ RVKE  ++L  E  R P +EE+A  TG++++R+ A +  P
Sbjct: 354 SVLEQTQIIRLPAHMAEASSRVKECCRRLRRELKRLPSNEEIAVDTGMTIRRVEAAMSLP 413

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K   S   K+G   ++   E++ D  AETAEE L +  MKKD+   L+SL+PREK V+R+
Sbjct: 414 KYSVSFTSKVGCT-DVTYQEIMPDTSAETAEEVLHRWLMKKDVNTALESLSPREKLVMRY 472

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++ GR + L +IG+++GVSRERIRQIE  AFRKL++KKR  + Q YL
Sbjct: 473 RFGIEGGRPRTLHDIGQIMGVSRERIRQIELGAFRKLRSKKRVQSLQHYL 522

[34][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
           RepID=Q10UV2_TRIEI
          Length = 386

 Score =  150 bits (380), Expect = 5e-35
 Identities = 75/170 (44%), Positives = 119/170 (70%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A +  +++++L  +  + 
Sbjct: 217 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATSMEMTIEKLRFIAKSA 276

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VL+SL+PRE+ V+R 
Sbjct: 277 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKNLLREDLESVLNSLSPRERDVLRL 335

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 336 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 385

[35][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
           RepID=B0CDC4_ACAM1
          Length = 371

 Score =  150 bits (380), Expect = 5e-35
 Identities = 75/170 (44%), Positives = 118/170 (69%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 202 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+Q+ K  +++DLE VLD+L+PRE+ V++ 
Sbjct: 262 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLLREDLETVLDTLSPRERDVLKL 320

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 321 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 370

[36][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
           RepID=Q59965_SYNP2
          Length = 375

 Score =  150 bits (379), Expect = 6e-35
 Identities = 76/170 (44%), Positives = 118/170 (69%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE   +++++L  +  + 
Sbjct: 206 AIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSA 265

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+Q+ K  +++DLE VLD+L+ RE+ V+R 
Sbjct: 266 QLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKSLLREDLENVLDTLSARERDVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 325 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 374

[37][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
           RepID=RPOD_SYNY3
          Length = 425

 Score =  150 bits (378), Expect = 8e-35
 Identities = 75/170 (44%), Positives = 118/170 (69%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+AE   +++++L  +  + 
Sbjct: 256 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSA 315

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 316 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 374

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 375 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 424

[38][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
           BP-1 RepID=Q8DL79_THEEB
          Length = 418

 Score =  149 bits (375), Expect = 2e-34
 Identities = 74/170 (43%), Positives = 118/170 (69%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A+   +++++L  +  + 
Sbjct: 249 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSA 308

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+Q+ K  +++DLE VL +L+PRE+ V++ 
Sbjct: 309 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKHLLREDLETVLCTLSPRERDVLKL 367

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 368 RYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 417

[39][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
           RepID=Q7NHG5_GLOVI
          Length = 400

 Score =  149 bits (375), Expect = 2e-34
 Identities = 74/170 (43%), Positives = 118/170 (69%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 231 AIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSA 290

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VL++L+PRE+ V+R 
Sbjct: 291 QLPISLETPIGKEEDSRLGDFI-EADGETPEDKVAKNLLREDLEAVLNTLSPRERDVLRL 349

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 350 RYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 399

[40][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
           6301 RepID=Q5N3Q1_SYNP6
          Length = 399

 Score =  148 bits (374), Expect = 2e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 230 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSA 289

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VL +L+PRE+ V+R 
Sbjct: 290 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRL 348

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 349 RYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[41][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
           RepID=B4WPM0_9SYNE
          Length = 404

 Score =  148 bits (374), Expect = 2e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 235 AIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSA 294

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VL +L+PRE+ V+R 
Sbjct: 295 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRL 353

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 354 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 403

[42][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
           PCC 7942 RepID=RPOD1_SYNE7
          Length = 399

 Score =  148 bits (374), Expect = 2e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 230 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSA 289

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VL +L+PRE+ V+R 
Sbjct: 290 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRL 348

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 349 RYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[43][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
           RepID=B8HPM3_CYAP4
          Length = 378

 Score =  147 bits (372), Expect = 4e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 209 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSA 268

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+Q+ K  +++DLE VL +L+PRE+ V++ 
Sbjct: 269 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLETVLCTLSPRERDVLKL 327

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 328 RYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 377

[44][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WS32_CYAA5
          Length = 416

 Score =  147 bits (372), Expect = 4e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+A    +++++L  +  + 
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSA 306

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415

[45][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
           RepID=Q4C7J7_CROWT
          Length = 414

 Score =  147 bits (372), Expect = 4e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+A    +++++L  +  + 
Sbjct: 245 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSA 304

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 305 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 363

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 364 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 413

[46][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
           RepID=A3ISY9_9CHRO
          Length = 416

 Score =  147 bits (372), Expect = 4e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+A    +++++L  +  + 
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSA 306

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415

[47][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
           RepID=B7KDV7_CYAP7
          Length = 376

 Score =  147 bits (371), Expect = 5e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+A    +++++L  +  + 
Sbjct: 207 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSA 266

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 267 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 325

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 326 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 375

[48][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
           RepID=B0JGK3_MICAN
          Length = 416

 Score =  147 bits (371), Expect = 5e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+A    +++++L  +  + 
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415

[49][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
           RepID=B4AUJ5_9CHRO
          Length = 377

 Score =  147 bits (371), Expect = 5e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+A    +++++L  +  + 
Sbjct: 208 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSA 267

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 268 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 326

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 327 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 376

[50][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
           RepID=B1PVV9_MICAE
          Length = 416

 Score =  147 bits (371), Expect = 5e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+A    +++++L  +  + 
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415

[51][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
           RepID=A8YBI5_MICAE
          Length = 416

 Score =  147 bits (371), Expect = 5e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+A    +++++L  +  + 
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415

[52][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
           RepID=RPOD_MICAE
          Length = 416

 Score =  147 bits (371), Expect = 5e-34
 Identities = 74/170 (43%), Positives = 117/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+A    +++++L  +  + 
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 307 QLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415

[53][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
           RepID=A4RYI5_OSTLU
          Length = 344

 Score =  146 bits (368), Expect = 1e-33
 Identities = 77/178 (43%), Positives = 113/178 (63%), Gaps = 1/178 (0%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+SDQSRTIRLP H+ E   R+ +  ++    NGR+P  EE+A    +S ++++ +    
Sbjct: 158 SISDQSRTIRLPVHLFEIISRISKMEQKFALHNGRNPTTEEIAAEMDMSAEKITQIKKAA 217

Query: 379 KAPRSLEQKIG-INQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIR 203
           +AP SL Q +G  N+     + + D  AE  E+   K  +K+DLE VL++LNPRE+ V+R
Sbjct: 218 QAPVSLAQTMGGDNKGRTVEDTLVDVTAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLR 277

Query: 202 WRFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVSHPSNT 29
            R+G+DDGR+K L EIG +  V+RERIRQIE+ A RKLK   RNS  Q+Y     +++
Sbjct: 278 LRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNSILQEYFADSDASS 335

[54][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
           RepID=B5ILG7_9CHRO
          Length = 503

 Score =  145 bits (367), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 334 AIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 393

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 394 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 452

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 453 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 502

[55][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MUC7_9CHLO
          Length = 587

 Score =  145 bits (367), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 109/170 (64%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+SDQSRTIRLP H+ E   R+ +  +QL  + GR P  EE+AE   +++++++ +    
Sbjct: 400 SISDQSRTIRLPVHLFEIISRMSKVERQLVMKYGRDPTTEEIAEVMDMTVEKINQIQKAS 459

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
             P SL Q +  + +    E + D  AE  ++   K  +K+DLE VL++L+PRE+ V+R 
Sbjct: 460 LVPISLSQSVNDDDSRTVEETLVDDHAEHPDDATGKVLLKEDLENVLNTLSPRERDVLRL 519

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+GMDDGR+K L EIG +  V+RERIRQIE+ A RKL+   RN   ++YL
Sbjct: 520 RYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQPSRNGILREYL 569

[56][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9313 RepID=Q7V698_PROMM
          Length = 461

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 292 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 351

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 352 QLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 410

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 411 RYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEYI 460

[57][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
           RepID=Q7U5C4_SYNPX
          Length = 471

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 302 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 361

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 362 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 420

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 421 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 470

[58][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
           RepID=Q3AWQ6_SYNS9
          Length = 451

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 282 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 341

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 342 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 400

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 401 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450

[59][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
           RepID=Q3ALS7_SYNSC
          Length = 435

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 266 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 325

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 326 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 384

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 385 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 434

[60][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
           RepID=Q0I8I7_SYNS3
          Length = 440

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 271 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 330

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 331 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 389

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 390 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 439

[61][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
           RepID=A5GJC2_SYNPW
          Length = 450

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 281 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 340

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 341 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 399

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 400 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 449

[62][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9303 RepID=A2C7M0_PROM3
          Length = 444

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 275 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 334

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 335 QLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 393

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 394 RYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEYI 443

[63][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
           RepID=Q05YJ7_9SYNE
          Length = 451

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 282 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 341

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 342 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 400

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 401 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450

[64][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
           RepID=Q05RP2_9SYNE
          Length = 479

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 310 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 369

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 370 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 428

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 429 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 478

[65][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
           RepID=D0CLH5_9SYNE
          Length = 458

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 289 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 348

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 349 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 407

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 408 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 457

[66][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
           RepID=C7QR23_CYAP0
          Length = 379

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E  R P +EE+A    +++++L  +  + 
Sbjct: 210 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSA 269

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+++ K  +++DLE VLD+L+PRE+ V+R 
Sbjct: 270 QLPISLETPIGKEEDSRLGDFI-EADGENPEDEVSKNLLREDLENVLDTLSPRERDVLRL 328

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 329 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 378

[67][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
           RepID=A4CRY9_SYNPV
          Length = 447

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 278 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 337

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 338 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 396

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 397 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 446

[68][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
           RepID=A3Z5L5_9SYNE
          Length = 456

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 287 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 346

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 347 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 405

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 406 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 455

[69][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
           RepID=A3YZH3_9SYNE
          Length = 469

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 300 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 359

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 360 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 418

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 419 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 468

[70][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
          Length = 525

 Score =  145 bits (366), Expect = 2e-33
 Identities = 80/179 (44%), Positives = 113/179 (63%), Gaps = 2/179 (1%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+SDQSRTIRLP H+ E   R+ +  ++    NGR P  EE+A    +S+++++ +    
Sbjct: 344 SISDQSRTIRLPVHLFEIISRISKMEQKFALYNGRPPTLEEIASEMEMSVEKITQIKKAA 403

Query: 379 KAPRSLEQKIG-INQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIR 203
           +AP SL Q +G  N+     + + D  AE  E+   K  +K+DLE VL++LNPRE+ V+R
Sbjct: 404 QAPVSLAQTMGGENKGRTIEDTLIDANAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLR 463

Query: 202 WRFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVSH-PSNT 29
            R+G+DDGR+K L EIG +  V+RERIRQIE+ A RKLK   RN   Q+Y V   P NT
Sbjct: 464 LRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNQVLQEYFVDDAPPNT 522

[71][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
           RepID=B1X5Q2_PAUCH
          Length = 460

 Score =  145 bits (366), Expect = 2e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 291 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 350

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 351 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 409

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 410 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 459

[72][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           NATL2A RepID=Q46GS6_PROMT
          Length = 420

 Score =  145 bits (365), Expect = 3e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 249 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 308

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 309 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRL 367

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 368 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 417

[73][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           NATL1A RepID=A2C0V5_PROM1
          Length = 420

 Score =  145 bits (365), Expect = 3e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 249 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 308

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 309 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRL 367

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 368 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 417

[74][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
           pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
          Length = 396

 Score =  144 bits (364), Expect = 3e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 227 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSA 286

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 287 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 345

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 346 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 395

[75][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9312 RepID=Q31C37_PROM9
          Length = 393

 Score =  144 bits (364), Expect = 3e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 224 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSA 283

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 284 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 342

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 343 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392

[76][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9215 RepID=A8G3L2_PROM2
          Length = 393

 Score =  144 bits (364), Expect = 3e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 224 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSA 283

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 284 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 342

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 343 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392

[77][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9301 RepID=A3PBM1_PROM0
          Length = 394

 Score =  144 bits (364), Expect = 3e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 225 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSA 284

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 285 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 343

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 344 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 393

[78][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9515 RepID=A2BVF8_PROM5
          Length = 397

 Score =  144 bits (364), Expect = 3e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 228 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSA 287

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 288 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 346

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 347 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 396

[79][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           AS9601 RepID=A2BPX8_PROMS
          Length = 394

 Score =  144 bits (364), Expect = 3e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 225 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSA 284

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 285 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 343

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 344 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 393

[80][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9202 RepID=B9P0P2_PROMA
          Length = 393

 Score =  144 bits (364), Expect = 3e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 224 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSA 283

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  E+ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 284 QLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 342

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 343 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392

[81][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
           RepID=Q7VD88_PROMA
          Length = 438

 Score =  144 bits (363), Expect = 5e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 269 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSA 328

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + ++E  E  + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 329 QLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRL 387

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 388 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 437

[82][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9211 RepID=A9BEB7_PROM4
          Length = 425

 Score =  144 bits (363), Expect = 5e-33
 Identities = 73/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 256 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSA 315

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + ++E  E  + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 316 QLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRL 374

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RN   ++Y+
Sbjct: 375 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 424

[83][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
           JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
          Length = 403

 Score =  144 bits (362), Expect = 6e-33
 Identities = 72/170 (42%), Positives = 116/170 (68%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+A    +++++L  +  + 
Sbjct: 234 AIADQSRTIRLPVHLYETISRIKKVTKLLSQELGRKPTEEEIATRMEITIEKLRFIAKSA 293

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + ET E+++ K  +++DLE VL++L  RE+ V++ 
Sbjct: 294 QLPISLETPIGKEEDSRLGDFI-ESDGETPEDRVAKVLLREDLESVLETLTARERDVLKL 352

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A RKL++  RNS  ++Y+
Sbjct: 353 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 402

[84][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
           RepID=A5GSD3_SYNR3
          Length = 401

 Score =  141 bits (356), Expect = 3e-32
 Identities = 71/170 (41%), Positives = 115/170 (67%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQSRTIRLP H+ E   R+K+  K L  E GR P +EE+AE+  +++++L  +  + 
Sbjct: 232 AIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSA 291

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++ +  + I + + E  ++ + K  +++DLE VL +L+PRE+ V+R 
Sbjct: 292 QLPISLETPIGKEEDSRLGDFI-EADIENPDQDVAKNLLREDLEGVLATLSPRERDVLRL 350

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           R+G+DDGRMK L EIG++  V+RERIRQIE+ A  KL++  RN   ++Y+
Sbjct: 351 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALLKLRHPNRNGVLKEYI 400

[85][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q8S9D0_GUITH
          Length = 490

 Score =  141 bits (355), Expect = 4e-32
 Identities = 69/176 (39%), Positives = 116/176 (65%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++D SRTIRLP H+ +    +++  + L  E GR P +EE+AE   +S+++L +VL + 
Sbjct: 272 AIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSA 331

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           +   SLE+ +  + +        + + E+ EE + K  ++ DLE V++SL+PRE+ V+R 
Sbjct: 332 QPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRM 391

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVSHPSN 32
           R+G+DDGR+K L EIG++  V+RER+RQIE+ A RKL+   R+S  + Y+++ PSN
Sbjct: 392 RYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYVLATPSN 447

[86][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R939_9THEO
          Length = 369

 Score =  139 bits (351), Expect = 1e-31
 Identities = 69/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+AE  G+S +++  ++   
Sbjct: 199 AIADQARTIRIPVHMVETINKLVRVSRQLVQELGREPTPEEIAEKMGISPEKVREIMKVA 258

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D EA+   E+     +++ L +VL SL PRE++V+R 
Sbjct: 259 QEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEASYALLREQLNEVLQSLTPREQKVLRL 318

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+   RKL++  R+   + YL
Sbjct: 319 RFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 368

[87][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
           Nor1 RepID=A1HPB3_9FIRM
          Length = 368

 Score =  137 bits (344), Expect = 7e-31
 Identities = 68/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    +S++R+  ++   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVSRQLLQEKGREPTPEEIAREMDISVERVREIMKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ LE+VL++L PRE++V+R 
Sbjct: 258 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPREEKVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 318 RFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 367

[88][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
           39073 RepID=Q2RKT5_MOOTA
          Length = 361

 Score =  136 bits (343), Expect = 9e-31
 Identities = 69/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  E GR P  EE+A    + ++R+  +    
Sbjct: 191 AIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPTPEEIAHEMDIPVERVREIQKIA 250

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A+   E      +++ LE+VL+SL PREK+V+R 
Sbjct: 251 QEPVSLETPIGEEEDSHLGDFIEDEDAQAPAEAASFMLLREQLEEVLNSLTPREKRVLRL 310

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 311 RFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360

[89][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
           RepID=C5D4R8_GEOSW
          Length = 374

 Score =  136 bits (342), Expect = 1e-30
 Identities = 69/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+AE   L+ +++  +L   
Sbjct: 204 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIA 263

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 323

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 324 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373

[90][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
           35185 RepID=C9LTA9_9FIRM
          Length = 375

 Score =  136 bits (342), Expect = 1e-30
 Identities = 69/170 (40%), Positives = 109/170 (64%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  + GR P  EE+AEA  +S++R+  ++   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPSPEEIAEAMEISVERVREIMKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ LE+VLD+L  RE++V+R 
Sbjct: 265 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLDTLTEREERVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDFL 374

[91][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
           RepID=C6QPZ7_9BACI
          Length = 377

 Score =  136 bits (342), Expect = 1e-30
 Identities = 69/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+AE   L+ +++  +L   
Sbjct: 207 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIA 266

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 267 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 326

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 327 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376

[92][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
          Length = 375

 Score =  136 bits (342), Expect = 1e-30
 Identities = 69/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+AE   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[93][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
          Length = 595

 Score =  135 bits (341), Expect = 2e-30
 Identities = 75/179 (41%), Positives = 109/179 (60%), Gaps = 9/179 (5%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S+SDQSRTIRLP H+ E   R+ +  +Q+  + GR P  EE+A+A  ++++++  +    
Sbjct: 412 SISDQSRTIRLPVHLFEIISRMSKVERQMVLKLGRDPTHEELADAMEMTVEKIKQIKKAS 471

Query: 379 KAPRSLEQKIGINQNLKPSEVIAD---------PEAETAEEQLIKQFMKKDLEKVLDSLN 227
             P SL Q +  N N +    + D         PE ET      K  +K+DLE VL++LN
Sbjct: 472 LVPISLSQTVN-NSNGEDKRTVEDTLIDDYTEHPEGETG-----KVLLKEDLENVLNTLN 525

Query: 226 PREKQVIRWRFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           PRE+ V+R R+G+DDGR+K L EIG +  V+RERIRQIE+ A RKL+   RN   ++YL
Sbjct: 526 PRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQPSRNGILREYL 584

[94][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
           RepID=UPI0001851148
          Length = 337

 Score =  135 bits (340), Expect = 2e-30
 Identities = 68/170 (40%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 167 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLPPEKVREILKIA 226

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 227 QEPVSLETPIGEEDDSHLGDFIEDSEAQSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 286

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 287 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 336

[95][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67RX0_SYMTH
          Length = 388

 Score =  135 bits (340), Expect = 2e-30
 Identities = 69/170 (40%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    + ++R+  +    
Sbjct: 218 AIADQARTIRIPVHMVETINKLIRVTRQLVQELGREPTPEEIAAVMDIPVERVREIQKIA 277

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ LE+VL+SL PRE++V+R 
Sbjct: 278 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFTLLKEQLEEVLESLTPREEKVLRL 337

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 338 RFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 387

[96][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           Y51 RepID=Q24T06_DESHY
          Length = 367

 Score =  135 bits (340), Expect = 2e-30
 Identities = 69/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    +S++R+  ++   
Sbjct: 197 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIA 256

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ LE+VL++L PRE++V+R 
Sbjct: 257 QEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRL 316

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 317 RFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 366

[97][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           DCB-2 RepID=B8FTY1_DESHD
          Length = 372

 Score =  135 bits (340), Expect = 2e-30
 Identities = 69/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    +S++R+  ++   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ LE+VL++L PRE++V+R 
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 322 RFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371

[98][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
           RepID=B0MPW5_9FIRM
          Length = 358

 Score =  135 bits (340), Expect = 2e-30
 Identities = 67/170 (39%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S++DQ+RTIR+P HM+E   +VK+   QL  ENG  P  +E+A+  G+++ R+  +L   
Sbjct: 188 SIADQARTIRIPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDRVREILRIS 247

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E   +  +K+ L ++L +L PRE++V+R 
Sbjct: 248 QDPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAASRTLLKEQLSEILGTLTPREEKVLRL 307

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 308 RFGLEDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDFL 357

[99][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
          Length = 485

 Score =  135 bits (340), Expect = 2e-30
 Identities = 66/172 (38%), Positives = 113/172 (65%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++D SRTIRLP H+ +    +++  + L  E GR P +EE+AE   +S+++L +VL + 
Sbjct: 272 AIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSA 331

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           +   SLE+ +  + +        + + E+ EE + K  ++ DLE V++SL+PRE+ V+R 
Sbjct: 332 QPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRM 391

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           R+G+DDGR+K L EIG++  V+RER+RQIE+ A RKL+   R+S  + Y+++
Sbjct: 392 RYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYVLA 443

[100][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
           RepID=B7GH73_ANOFW
          Length = 372

 Score =  135 bits (339), Expect = 3e-30
 Identities = 68/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+AE   L+ +++  +L   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEEMDLTPEKVREILKIA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 322 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371

[101][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
           RepID=B1HTI2_LYSSC
          Length = 375

 Score =  135 bits (339), Expect = 3e-30
 Identities = 67/170 (39%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[102][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
           RepID=C6PJN3_9THEO
          Length = 273

 Score =  135 bits (339), Expect = 3e-30
 Identities = 67/171 (39%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E+  ++ + +KQ   + GR P  EE+AE   +S K+   +L   
Sbjct: 103 AIADQARTIRIPVHMVESVNKLLKIQKQFLQKLGREPSIEEIAEEMNISEKKAKVLLEIV 162

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           +   SLE+ +G ++N K  ++IAD EA    E+L    +K+ +++VL +L PRE++V+R 
Sbjct: 163 QGIVSLEEPVGEDENGKLGDIIADKEAVDPVEELESMLLKEQVDEVLSTLAPREEKVLRL 222

Query: 199 RFGMDDGRMKXLPEIG-EMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDG+++ L E+G E+ G+SRER+RQIE+ A ++L++  R+   +++L
Sbjct: 223 RFGLDDGKIRTLEEVGKELGGISRERVRQIETKALKRLRHPNRSRRLKEFL 273

[103][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
           Tax=Geobacillus RepID=C9RYK5_9BACI
          Length = 375

 Score =  135 bits (339), Expect = 3e-30
 Identities = 68/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+AE   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[104][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
           14580 RepID=Q65H81_BACLD
          Length = 373

 Score =  134 bits (338), Expect = 4e-30
 Identities = 68/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+AE   L+ +++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[105][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
           JW/NM-WN-LF RepID=B2A1Z3_NATTJ
          Length = 360

 Score =  134 bits (338), Expect = 4e-30
 Identities = 70/170 (41%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+AE   +S  ++  +L   
Sbjct: 190 AIADQARTIRIPVHMVETINKLIRVSRQLVQELGREPLPEEIAEQMDMSEDKVREILKIA 249

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A+   +    + +K  LE+VLDSL PRE++V+R 
Sbjct: 250 QEPVSLETPIGEEDDSHLGDFIEDQDAKPPADAAAFELLKGQLEEVLDSLTPREQKVLRL 309

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDG+ + L E+G+  GV+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 310 RFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRKLRHPMRSKRLKDYL 359

[106][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
           RepID=A8FFA5_BACP2
          Length = 373

 Score =  134 bits (338), Expect = 4e-30
 Identities = 68/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+AE   L+ +++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[107][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
           FZB42 RepID=A7Z6T5_BACA2
          Length = 373

 Score =  134 bits (338), Expect = 4e-30
 Identities = 68/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+AE   L+ +++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[108][TOP]
>UniRef100_A9RG56 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RG56_PHYPA
          Length = 581

 Score =  134 bits (338), Expect = 4e-30
 Identities = 68/173 (39%), Positives = 114/173 (65%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S++DQSR IRLP H+ E   R+ ++R  +  + GR   DEEVA A G+S+++L  +L + 
Sbjct: 408 SITDQSRIIRLPVHIYEVISRINKSRMMIAEDQGRQARDEEVATAVGISVEKLDFILKSA 467

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P S++Q IG +++L   E++AD    +A++ L  + +K+D++ VL +L+P E++V+R 
Sbjct: 468 RLPASMDQLIGRDKDLPLWEMVADKGFNSADDFLTNEVLKQDIDGVLQTLSPTEREVLRL 527

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVSH 41
           RFG+DD +   L +IG    V+RERIRQIE  A RKL++  R +  Q ++ ++
Sbjct: 528 RFGLDDAQSMTLKDIGIFFKVTRERIRQIEVRALRKLRHPTRRNILQGHVKNY 580

[109][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
           RepID=RPOD_BACSU
          Length = 371

 Score =  134 bits (338), Expect = 4e-30
 Identities = 68/170 (40%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+AE   L+ +++  +L   
Sbjct: 201 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIA 260

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 261 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 320

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 321 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 370

[110][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
           RepID=A3IBK5_9BACI
          Length = 375

 Score =  134 bits (337), Expect = 5e-30
 Identities = 66/170 (38%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE V+D+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVIDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[111][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q98RZ3_GUITH
          Length = 460

 Score =  134 bits (337), Expect = 5e-30
 Identities = 66/173 (38%), Positives = 112/173 (64%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++D SRTIRLP H+ +    +++  + L  E GR P +EE+A+   +S+++L  VL + 
Sbjct: 255 AIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDMSVEKLRNVLQSA 314

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           +   SLE+ +  + +        + + E+ EE + K  ++ DLE V++SL+PRE+ V+R 
Sbjct: 315 QPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRM 374

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVSH 41
           R+G+DDGR+K L EIG++  V+RER+RQIE+ A RKL+   R+S  + Y+ S+
Sbjct: 375 RYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYVASN 427

[112][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
           RepID=RPSD2_BACSP
          Length = 377

 Score =  134 bits (337), Expect = 5e-30
 Identities = 69/170 (40%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    LS++++  ++   
Sbjct: 207 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIA 266

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA T  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 267 QEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRL 326

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 327 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376

[113][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
           RepID=Q2B288_9BACI
          Length = 374

 Score =  134 bits (336), Expect = 6e-30
 Identities = 68/170 (40%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+AE   L+  ++  +L   
Sbjct: 204 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPDKVREILKIA 263

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 323

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 324 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373

[114][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
           A1055 RepID=UPI0001B41595
          Length = 373

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[115][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
           RepID=C3LKX1_BACAC
          Length = 373

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[116][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
           RepID=B9IY60_BACCQ
          Length = 375

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[117][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
          Length = 373

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[118][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
           RepID=C2YWN0_BACCE
          Length = 375

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[119][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
           RepID=C2WC75_BACCE
          Length = 373

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[120][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
           RepID=C2U2P5_BACCE
          Length = 375

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[121][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
           RepID=B7HCR6_BACC4
          Length = 375

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[122][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
           RepID=A9VHS1_BACWK
          Length = 375

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[123][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
           RepID=C2PK08_BACCE
          Length = 375

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[124][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
           RepID=B7HPJ2_BACC7
          Length = 375

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[125][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
           RepID=B7IYE3_BACC2
          Length = 375

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[126][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
           RepID=A0RIR5_BACAH
          Length = 373

 Score =  133 bits (335), Expect = 8e-30
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[127][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
           RepID=A7GSY8_BACCN
          Length = 373

 Score =  133 bits (334), Expect = 1e-29
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGEEMDLAPEKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[128][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
           aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
          Length = 368

 Score =  133 bits (334), Expect = 1e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPAPEEIGEEMDLPAEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[129][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           subsp. aureus N315 RepID=RPOD_STAAN
          Length = 368

 Score =  133 bits (334), Expect = 1e-29
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  VL   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREVLKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[130][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
           RepID=RPOD_BACHD
          Length = 372

 Score =  133 bits (334), Expect = 1e-29
 Identities = 68/170 (40%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EEVAE   L+ +++  +L   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEEMDLTPEKVREILKIA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A    +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVLDTLTDREENVLRL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 322 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371

[131][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
          Length = 377

 Score =  132 bits (333), Expect = 1e-29
 Identities = 68/170 (40%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    LS++++  ++   
Sbjct: 207 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAAEMELSVEKVREIMKIA 266

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA    +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 267 QEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRL 326

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 327 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376

[132][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           A9299 RepID=C8M7C3_STAAU
          Length = 368

 Score =  132 bits (333), Expect = 1e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[133][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
           aureus A6300 RepID=C8LTM9_STAAU
          Length = 368

 Score =  132 bits (333), Expect = 1e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[134][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           subsp. aureus 68-397 RepID=C8ACF1_STAAU
          Length = 342

 Score =  132 bits (333), Expect = 1e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 172 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIA 231

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 232 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 291

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 292 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 341

[135][TOP]
>UniRef100_C7H329 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
           prausnitzii A2-165 RepID=C7H329_9FIRM
          Length = 461

 Score =  132 bits (333), Expect = 1e-29
 Identities = 65/161 (40%), Positives = 104/161 (64%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   R+++A  QL  +NG  P  EE+A+A  +S++R+  +    
Sbjct: 291 AIADQARTIRIPVHMVETINRMRQATNQLVYQNGHEPTPEELAKAMDMSVERVREIQRMA 350

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  +G  ++    + +AD  AE   +   +  + + + + L SL PRE++VIR 
Sbjct: 351 QEPASLESPVGEEEDSSLGDFVADENAEAPGKAADRAMVAQQINQALKSLTPREEKVIRL 410

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKK 77
           RFG+DDGR + L E+G   GV+RER+RQIE+ A RKL ++K
Sbjct: 411 RFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSRK 451

[136][TOP]
>UniRef100_C0CZA7 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
           15981 RepID=C0CZA7_9CLOT
          Length = 405

 Score =  132 bits (333), Expect = 1e-29
 Identities = 65/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +L+DQ+RTIRLP HM+EA  +++  ++ L  + GR P + E+AEA G++ KR+  ++ T 
Sbjct: 235 ALADQARTIRLPVHMVEAVNKIRRTQRDLSVQLGRDPSNRELAEAVGMTEKRVEELIQTS 294

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
               SLE  +G        + +AD   ++ E+Q     ++++++ +L  LN RE+QVI+ 
Sbjct: 295 GDTVSLETPVGDEDGSSLGDFVADNAGDSTEDQAENVLLREEIDSMLQGLNERERQVIKL 354

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+++GR   L E+G    V+RERIRQIE+ A RKL+N  R+   + +L
Sbjct: 355 RFGLENGRPLTLEEVGRQFNVTRERIRQIETAALRKLRNPVRSKKVRDFL 404

[137][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
           RepID=B3YVL5_BACCE
          Length = 373

 Score =  132 bits (333), Expect = 1e-29
 Identities = 67/170 (39%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L+ +++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEGDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[138][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
           RepID=RPOD_STAA8
          Length = 368

 Score =  132 bits (333), Expect = 1e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[139][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
           JCSC1435 RepID=Q4L6R1_STAHJ
          Length = 368

 Score =  132 bits (332), Expect = 2e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[140][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
          Length = 368

 Score =  132 bits (332), Expect = 2e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[141][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
          Length = 370

 Score =  132 bits (332), Expect = 2e-29
 Identities = 64/170 (37%), Positives = 109/170 (64%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    + L  E GR P  EE+A+  G+S  ++  ++   
Sbjct: 200 AIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIA 259

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + + DP+A+   E+     +++ L++VL +L  RE++V+R 
Sbjct: 260 QEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRL 319

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 320 RFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369

[142][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
           RepID=B8I6N1_CLOCE
          Length = 359

 Score =  132 bits (332), Expect = 2e-29
 Identities = 67/170 (39%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  +E+A+  G+S+ ++  ++   
Sbjct: 189 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPDEIAKEIGMSVDKVREIMKIS 248

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 249 QEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTLLKEQLIDVLDTLTPREEKVLRL 308

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 309 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358

[143][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
           23779 RepID=A9B4B0_HERA2
          Length = 400

 Score =  132 bits (332), Expect = 2e-29
 Identities = 64/170 (37%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   R+    ++L  ENGR P DEE+A+A  L+++++ ++  T 
Sbjct: 230 AIADQARTIRIPVHMVETINRMMRTARRLTQENGREPSDEELAQALDLTVEKVRSIRKTS 289

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
             P SLE  +G  ++ +  + + D + E   +    Q +++ + +VLD L  REK+V++ 
Sbjct: 290 MEPVSLETPVGQEEDSQLGDFLPDEKLEAPSDAASHQMLREQVAQVLDQLTEREKRVLKL 349

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DG  + L E+G+  GV+RERIRQIE  A RKL++ +     + YL
Sbjct: 350 RFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRFGKKLRDYL 399

[144][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
           786 str. D14 RepID=C6J365_9BACL
          Length = 374

 Score =  132 bits (332), Expect = 2e-29
 Identities = 68/170 (40%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    LS++++  ++   
Sbjct: 204 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPAPEEIAAEMDLSVEKVREIMKIA 263

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA    +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRL 323

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 324 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373

[145][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
           W23144 RepID=C5QXG6_STAEP
          Length = 368

 Score =  132 bits (332), Expect = 2e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[146][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
           M23864:W1 RepID=C5QSV2_STAEP
          Length = 368

 Score =  132 bits (332), Expect = 2e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[147][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
           RepID=C4WCC7_STAWA
          Length = 367

 Score =  132 bits (332), Expect = 2e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 197 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIA 256

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 257 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 316

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 317 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 366

[148][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
           RepID=C2M0X4_STAHO
          Length = 368

 Score =  132 bits (332), Expect = 2e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[149][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
           RepID=C0GBZ7_9FIRM
          Length = 372

 Score =  132 bits (332), Expect = 2e-29
 Identities = 66/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  +E+A    +S +R+  +L   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRVSRQLVQELGREPAPDEIAHVMNISEERVREILKIA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D + +   E    + +K+ L+ VL++L PREK+V+  
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDQDVQAPAEAAAFELLKEQLDDVLETLTPREKKVLTL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 322 RFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRHPMRSKRLKDYL 371

[150][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
           RepID=B9CVA9_STACP
          Length = 368

 Score =  132 bits (332), Expect = 2e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[151][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
           RepID=RPOD_STAEQ
          Length = 368

 Score =  132 bits (332), Expect = 2e-29
 Identities = 66/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[152][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
           RepID=C4L3Z9_EXISA
          Length = 364

 Score =  132 bits (331), Expect = 2e-29
 Identities = 66/170 (38%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+A+   L+ +++  +L   
Sbjct: 194 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAKEMELTPEKVREILKIA 253

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A   ++    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 254 QEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDAAAYELLKEQLEDVLDTLTDREENVLRL 313

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 314 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 363

[153][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
           JCSC5402 RepID=B9E6V2_MACCJ
          Length = 366

 Score =  132 bits (331), Expect = 2e-29
 Identities = 65/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 196 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPSPEEIGEEMDLPAEKVREILKIA 255

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 256 QEPVSLETPIGEEDDSHLGDFIEDQDAQSPADHAAYELLKEQLEDVLDTLTDREENVLRL 315

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 316 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 365

[154][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
           RepID=A8MG96_ALKOO
          Length = 372

 Score =  132 bits (331), Expect = 2e-29
 Identities = 69/170 (40%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    LS +++  +L   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPKPEEIAAEMDLSEEKVREILKIA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L +VLD+L PRE++V+R 
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFSLLKEQLVEVLDTLTPREQKVLRL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 322 RFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371

[155][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
           subsp. larvae BRL-230010 RepID=UPI0001693157
          Length = 375

 Score =  131 bits (330), Expect = 3e-29
 Identities = 68/170 (40%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   LS  ++  ++   
Sbjct: 205 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMELSTDKVREIMKIA 264

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA    +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRL 324

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374

[156][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WHD0_BACSK
          Length = 373

 Score =  131 bits (330), Expect = 3e-29
 Identities = 68/170 (40%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EEV +   LS  ++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVQRQLLQDYGREPTPEEVGKEMDLSPDKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA    +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLEDVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[157][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
           sakei 23K RepID=Q38X96_LACSS
          Length = 369

 Score =  131 bits (330), Expect = 3e-29
 Identities = 66/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     ++  ++  +L   
Sbjct: 199 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMNTDKVREILKIA 258

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + EE    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 259 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTLTDREENVLRL 318

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 319 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368

[158][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
           MC2 155 RepID=A0QVZ5_MYCS2
          Length = 319

 Score =  131 bits (330), Expect = 3e-29
 Identities = 64/168 (38%), Positives = 109/168 (64%)
 Frame = -2

Query: 556 LSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPK 377
           ++DQSRTIRLP H++E   ++   +++++   GR   DEE+AE +G+ +++++ +L   +
Sbjct: 150 MADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSR 209

Query: 376 APRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWR 197
            P SL+  +G ++     + I D EA +AE  +I + +  D+  VL +L+ RE+QVIR R
Sbjct: 210 DPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLR 269

Query: 196 FGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQY 53
           FG+DDG+ + L +IG++ G+SRER+RQIE     KL+N +R    + Y
Sbjct: 270 FGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317

[159][TOP]
>UniRef100_A8S616 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii
           M21/2 RepID=A8S616_9FIRM
          Length = 457

 Score =  131 bits (330), Expect = 3e-29
 Identities = 65/161 (40%), Positives = 103/161 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   R+++A  QL  +NG  P  EE+A+A  +S++R+  +    
Sbjct: 287 AIADQARTIRIPVHMVETINRMRQATNQLVYQNGHEPTPEELAKAMDMSVERVREIQRMA 346

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  +G  ++    + +AD  AE   +   +  + + +   L SL PRE++VIR 
Sbjct: 347 QEPASLESPVGEEEDSSLGDFVADENAEAPGKAADRAMVAQQINLALKSLTPREEKVIRL 406

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKK 77
           RFG+DDGR + L E+G   GV+RER+RQIE+ A RKL ++K
Sbjct: 407 RFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSRK 447

[160][TOP]
>UniRef100_A8ETJ7 RNA polymerase sigma factor n=1 Tax=Arcobacter butzleri RM4018
           RepID=A8ETJ7_ARCB4
          Length = 626

 Score =  131 bits (329), Expect = 4e-29
 Identities = 68/173 (39%), Positives = 111/173 (64%), Gaps = 1/173 (0%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   R+ +  ++   ENG+ PD EE+A+  GL + ++  V+   
Sbjct: 454 AIADQARTIRIPIHMIETINRINKIIRKGVQENGKEPDIEEIAKEVGLPVDKVKQVIKIT 513

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K P SLE  IG +++ K  + + D +A T  + ++K+ ++  ++++L  LN RE+ VIR 
Sbjct: 514 KEPVSLEAPIGSDEDGKFGDFVPDEKAPTPIDNIMKEDLQGQIDQILSQLNEREQAVIRM 573

Query: 199 RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           RFG M+D   + L EIG+ L V+RER+RQIES A +KLK+ K     + Y+ S
Sbjct: 574 RFGLMEDASDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGKNLKNYVES 626

[161][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
           20544 RepID=C9KNX0_9FIRM
          Length = 373

 Score =  131 bits (329), Expect = 4e-29
 Identities = 66/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  + GR P  EE+A+   + + R+  ++   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPTPEEIAKEMEIGVDRVREIMKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    +      +K+ LE VLD+L PRE++V+R 
Sbjct: 263 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPADAASFMLLKEQLEDVLDTLTPREEKVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 323 RFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDFL 372

[162][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
           RepID=C9B6G3_ENTFC
          Length = 369

 Score =  131 bits (329), Expect = 4e-29
 Identities = 67/170 (39%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     L  +++  +L   
Sbjct: 199 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIA 258

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 259 QEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 318

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 319 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368

[163][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
           oral taxon 786 str. D14 RepID=C6IWD8_9BACL
          Length = 325

 Score =  131 bits (329), Expect = 4e-29
 Identities = 67/170 (39%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   L+  ++  ++   
Sbjct: 155 AIADQARTIRIPVHMVETINKLIRVSRQLLQEIGREPTPEEIAKEMDLTPDKVREIMKIA 214

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A    E    + +K+ LE+VLD+L  RE+ V+R 
Sbjct: 215 QEPVSLETPIGEENDSNLGDFIEDHDAPAPAEAAAYELLKEQLEEVLDTLTEREENVLRL 274

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFGMDDGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 275 RFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 324

[164][TOP]
>UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
           RepID=C4V564_9FIRM
          Length = 383

 Score =  131 bits (329), Expect = 4e-29
 Identities = 66/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+  G+++ R+  ++   
Sbjct: 213 AIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPHPEEIAKEMGITVARVHEIMKIA 272

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D  A    E      +++ LE+VL++L  REK V+R 
Sbjct: 273 QEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLLREQLEEVLETLTDREKNVLRL 332

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 333 RFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRSKVLRDFL 382

[165][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
           RepID=C2HA56_ENTFC
          Length = 369

 Score =  131 bits (329), Expect = 4e-29
 Identities = 67/170 (39%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     L  +++  +L   
Sbjct: 199 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIA 258

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 259 QEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 318

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 319 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368

[166][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
           tengcongensis RepID=Q8R970_THETN
          Length = 372

 Score =  130 bits (328), Expect = 5e-29
 Identities = 67/170 (39%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  E GR P  EE+A+  G+  +++  +L   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPTPEELAKEMGMPEEKVREILKIA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAYTMLKEQLMDVLDTLTPREEKVLRL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 322 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 371

[167][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
           RepID=Q892T0_CLOTE
          Length = 366

 Score =  130 bits (328), Expect = 5e-29
 Identities = 68/170 (40%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   +S+ R+  ++   
Sbjct: 196 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMEISVDRVREIMKIA 255

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 256 QEPVSLETPIGEEEDSHLGDFIPDDDALAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 315

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 316 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 365

[168][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
           RepID=C6CTW1_PAESJ
          Length = 376

 Score =  130 bits (328), Expect = 5e-29
 Identities = 68/170 (40%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    LS  ++  ++   
Sbjct: 206 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSTDKVREIMKIA 265

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA    +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 266 QEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRL 325

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 326 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 375

[169][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
           100599 RepID=C0ZB92_BREBN
          Length = 376

 Score =  130 bits (328), Expect = 5e-29
 Identities = 67/170 (39%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+AE   L+ +++  ++   
Sbjct: 206 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAEKMDLTPEKVREIMKIA 265

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A    +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 266 QEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLEDVLDTLTDREENVLRL 325

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 326 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 375

[170][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
           6725 RepID=B9MQ36_ANATD
          Length = 417

 Score =  130 bits (328), Expect = 5e-29
 Identities = 66/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   + ++++  +L   
Sbjct: 247 AIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIA 306

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L +VLDSLN REK+V++ 
Sbjct: 307 QEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKL 366

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 367 RFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416

[171][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
           carnosus TM300 RepID=B9DNN2_STACT
          Length = 369

 Score =  130 bits (328), Expect = 5e-29
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 199 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIA 258

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D E ++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 259 QEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 318

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 319 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 368

[172][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
           QYMF RepID=A6TSG9_ALKMQ
          Length = 372

 Score =  130 bits (328), Expect = 5e-29
 Identities = 68/170 (40%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   L  +++  +L   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRVSRQLLQEFGREPKPEEIAKEMDLPEEKVREILKIA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L +VLD+L PRE++V+R 
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFSLLKEQLIEVLDTLTPREQKVLRL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 322 RFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371

[173][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
           saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
          Length = 411

 Score =  130 bits (328), Expect = 5e-29
 Identities = 66/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   + ++++  +L   
Sbjct: 241 AIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIA 300

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L +VLDSLN REK+V++ 
Sbjct: 301 QEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKL 360

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 361 RFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 410

[174][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
           RepID=A1UF13_MYCSK
          Length = 319

 Score =  130 bits (328), Expect = 5e-29
 Identities = 64/168 (38%), Positives = 108/168 (64%)
 Frame = -2

Query: 556 LSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPK 377
           ++DQSRTIRLP H++E   ++   +++++   GR   DEE+AE +G+  ++++ +L   +
Sbjct: 150 MADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPAEKIADLLEHSR 209

Query: 376 APRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWR 197
            P SL+  +G ++     + I D EA +AE  +I + +  D+  VL +L+ RE+QVIR R
Sbjct: 210 DPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRHVLATLDEREQQVIRLR 269

Query: 196 FGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQY 53
           FG+DDG+ + L +IG++ G+SRER+RQIE     KL+N +R    + Y
Sbjct: 270 FGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317

[175][TOP]
>UniRef100_Q9S1D0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori
            RepID=Q9S1D0_HELPY
          Length = 675

 Score =  130 bits (328), Expect = 5e-29
 Identities = 68/171 (39%), Positives = 108/171 (63%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559  SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
            +++DQ+RTIR+P HM++   R+ +  ++   ENG+ PD E VAE  GLS+ ++  V+   
Sbjct: 503  AIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVT 562

Query: 379  KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
            K P SLE  +G + + K  + + D    ++ + ++++ +K  +E VLD LN REK VIR 
Sbjct: 563  KEPISLETPVGNDDDGKFGDFVEDKNIASSIDHIMREDLKAQIESVLDQLNEREKAVIRM 622

Query: 199  RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
            RFG +DD   + L EIG+ L V+RER+RQIES A +KL++ +     + YL
Sbjct: 623  RFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 673

[176][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
           101-4-CHN RepID=C7XU09_9LACO
          Length = 381

 Score =  130 bits (328), Expect = 5e-29
 Identities = 67/170 (39%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  K++  +L   
Sbjct: 211 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTKKVRDILKIA 270

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + MKK LE VLD+L  RE+ V+R 
Sbjct: 271 QEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 330

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 331 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 380

[177][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
           RepID=C2C209_LISGR
          Length = 389

 Score =  130 bits (328), Expect = 5e-29
 Identities = 66/170 (38%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++ L  + GR P  EE+ E   L  +++  +L   
Sbjct: 219 AIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIA 278

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 279 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 338

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G + GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 339 RFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 388

[178][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
           RepID=C1PEH1_BACCO
          Length = 377

 Score =  130 bits (328), Expect = 5e-29
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++ L  + GR P  EE+AE   +S  ++  ++   
Sbjct: 207 AIADQARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIAEEMDISPDKVREIIKIA 266

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 267 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 326

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 327 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376

[179][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
           RepID=Q74IZ4_LACJO
          Length = 372

 Score =  130 bits (327), Expect = 7e-29
 Identities = 65/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +   ++  +L   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTDKVREILKIA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE+VLD+L  RE+ V+R 
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R++  + +L
Sbjct: 322 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371

[180][TOP]
>UniRef100_B6JPJ0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori P12
            RepID=B6JPJ0_HELP2
          Length = 680

 Score =  130 bits (327), Expect = 7e-29
 Identities = 68/171 (39%), Positives = 108/171 (63%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559  SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
            +++DQ+RTIR+P HM++   R+ +  ++   ENG+ PD E VAE  GLS+ ++  V+   
Sbjct: 508  AIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVT 567

Query: 379  KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
            K P SLE  +G + + K  + + D    ++ + ++++ +K  +E VLD LN REK VIR 
Sbjct: 568  KEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRM 627

Query: 199  RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
            RFG +DD   + L EIG+ L V+RER+RQIES A +KL++ +     + YL
Sbjct: 628  RFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 678

[181][TOP]
>UniRef100_B5Z9M1 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori G27
            RepID=B5Z9M1_HELPG
          Length = 682

 Score =  130 bits (327), Expect = 7e-29
 Identities = 68/171 (39%), Positives = 108/171 (63%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559  SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
            +++DQ+RTIR+P HM++   R+ +  ++   ENG+ PD E VAE  GLS+ ++  V+   
Sbjct: 510  AIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVT 569

Query: 379  KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
            K P SLE  +G + + K  + + D    ++ + ++++ +K  +E VLD LN REK VIR 
Sbjct: 570  KEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRM 629

Query: 199  RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
            RFG +DD   + L EIG+ L V+RER+RQIES A +KL++ +     + YL
Sbjct: 630  RFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 680

[182][TOP]
>UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC
            BAA-835 RepID=B2UM02_AKKM8
          Length = 688

 Score =  130 bits (327), Expect = 7e-29
 Identities = 69/170 (40%), Positives = 105/170 (61%)
 Frame = -2

Query: 559  SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
            S++DQ+RTIR+P HM+E   ++   +KQL  E GR P  EE+AE   L ++R+ +VL   
Sbjct: 514  SIADQARTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIAEEIHLPVERVRSVLKMA 573

Query: 379  KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
            + P SL+  +G + +    + I D  AE   E+    F+K+ ++ VLD+L  RE++VI  
Sbjct: 574  QQPISLQAPVGDSDDTSFGDFIEDKAAENPMEEASFSFLKEKIKDVLDTLTDREREVIEQ 633

Query: 199  RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
            RFG+ DG  + L E+G    V+RERIRQIE+ A RKL++  R S  + +L
Sbjct: 634  RFGLRDGSPRTLEEVGRQFSVTRERIRQIEAKALRKLRHPTRISKIKGFL 683

[183][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
           RepID=A4TCQ2_MYCGI
          Length = 329

 Score =  130 bits (327), Expect = 7e-29
 Identities = 64/168 (38%), Positives = 108/168 (64%)
 Frame = -2

Query: 556 LSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPK 377
           ++DQSRTIRLP H++E   ++   +++++   GR   DEE+AE +G+ +++++ +L   +
Sbjct: 160 MADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSR 219

Query: 376 APRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWR 197
            P SL+  +G ++     + I D EA +AE  +I + +  D+  VL +L+ RE+QVIR R
Sbjct: 220 DPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLR 279

Query: 196 FGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQY 53
           FG+DDG+ + L +IG++ G+SRER+RQIE     KL+N  R    + Y
Sbjct: 280 FGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGDRADRLRSY 327

[184][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
           27405 RepID=A3DDV0_CLOTH
          Length = 358

 Score =  130 bits (327), Expect = 7e-29
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   + ++++  ++   
Sbjct: 188 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKVREIMKIS 247

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 248 QEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRL 307

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 308 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357

[185][TOP]
>UniRef100_Q59553 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis
           RepID=Q59553_MYCSM
          Length = 319

 Score =  130 bits (327), Expect = 7e-29
 Identities = 63/161 (39%), Positives = 107/161 (66%)
 Frame = -2

Query: 556 LSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPK 377
           ++DQSRTIRLP H++E   ++   +++++   GR   DEE+AE +G+ +++++ +L   +
Sbjct: 150 MADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSR 209

Query: 376 APRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWR 197
            P SL+  +G ++     + I D EA +AE  +I + +  D+  VL +L+ RE+QVIR R
Sbjct: 210 DPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLR 269

Query: 196 FGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKR 74
           FG+DDG+ + L +IG++ G+SRER+RQIE     KL+N +R
Sbjct: 270 FGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGER 310

[186][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
           RepID=C7TJI1_LACRL
          Length = 416

 Score =  130 bits (327), Expect = 7e-29
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 246 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIA 305

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 306 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRL 365

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 366 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415

[187][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
          Length = 358

 Score =  130 bits (327), Expect = 7e-29
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   + ++++  ++   
Sbjct: 188 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKVREIMKIS 247

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 248 QEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRL 307

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 308 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357

[188][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
           RepID=C6PTX7_9CLOT
          Length = 361

 Score =  130 bits (327), Expect = 7e-29
 Identities = 68/170 (40%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EEVA+   + + ++  ++   
Sbjct: 191 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEVAKIMEMPVDKVREIMKIA 250

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D EA    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 251 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 310

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 311 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360

[189][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
           paracasei 8700:2 RepID=C5F5B8_LACPA
          Length = 352

 Score =  130 bits (327), Expect = 7e-29
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 182 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIA 241

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 242 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRL 301

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 302 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 351

[190][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
           RepID=C4VL08_9LACO
          Length = 364

 Score =  130 bits (327), Expect = 7e-29
 Identities = 65/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +   ++  +L   
Sbjct: 194 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMGTDKVRDILKIA 253

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE+VLD+L  RE+ V+R 
Sbjct: 254 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEVLDTLTDREENVLRL 313

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R++  + +L
Sbjct: 314 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363

[191][TOP]
>UniRef100_C3XP94 RNA polymerase sigma factor (Fragment) n=1 Tax=Helicobacter
           winghamensis ATCC BAA-430 RepID=C3XP94_9HELI
          Length = 615

 Score =  130 bits (327), Expect = 7e-29
 Identities = 69/170 (40%), Positives = 105/170 (61%), Gaps = 1/170 (0%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   R+ +  ++   E G+ PD E++AE  GL + ++  V+   
Sbjct: 446 AIADQARTIRIPIHMIETINRINKIMRKCLQEEGKEPDLEKIAEEVGLPLDKVKNVIKIT 505

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K P SLE  IG  ++ K  + + D  A    + ++K+ +K  ++ VLD LN REK VIR 
Sbjct: 506 KEPISLEAPIGNGEDGKFGDFVEDKSAVGPMDHILKEDLKSQIDDVLDQLNEREKAVIRM 565

Query: 199 RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQY 53
           RFG +DD   + L EIG+ L V+RER+RQIES A +KLK+ K     + Y
Sbjct: 566 RFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNY 615

[192][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
           RepID=C2JXD0_LACRH
          Length = 416

 Score =  130 bits (327), Expect = 7e-29
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 246 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIA 305

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 306 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRL 365

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 366 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415

[193][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
           RepID=B3WEK4_LACCB
          Length = 422

 Score =  130 bits (327), Expect = 7e-29
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 252 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIA 311

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 312 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRL 371

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 372 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 421

[194][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
           33200 RepID=C2E6R7_LACJO
          Length = 372

 Score =  130 bits (327), Expect = 7e-29
 Identities = 65/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +   ++  +L   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTDKVREILKIA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE+VLD+L  RE+ V+R 
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R++  + +L
Sbjct: 322 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371

[195][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
           RepID=C2E1K8_9LACO
          Length = 364

 Score =  130 bits (327), Expect = 7e-29
 Identities = 65/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +   ++  +L   
Sbjct: 194 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMGTDKVRDILKIA 253

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE+VLD+L  RE+ V+R 
Sbjct: 254 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEVLDTLTDREENVLRL 313

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R++  + +L
Sbjct: 314 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363

[196][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
           RepID=Q042Y7_LACGA
          Length = 373

 Score =  130 bits (327), Expect = 7e-29
 Identities = 65/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +   ++  +L   
Sbjct: 203 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTDKVREILKIA 262

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE+VLD+L  RE+ V+R 
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRL 322

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R++  + +L
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 372

[197][TOP]
>UniRef100_B9Y1K0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori B128
            RepID=B9Y1K0_HELPY
          Length = 679

 Score =  130 bits (327), Expect = 7e-29
 Identities = 68/171 (39%), Positives = 108/171 (63%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559  SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
            +++DQ+RTIR+P HM++   R+ +  ++   ENG+ PD E VAE  GLS+ ++  V+   
Sbjct: 507  AIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVT 566

Query: 379  KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
            K P SLE  +G + + K  + + D    ++ + ++++ +K  +E VLD LN REK VIR 
Sbjct: 567  KEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRM 626

Query: 199  RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
            RFG +DD   + L EIG+ L V+RER+RQIES A +KL++ +     + YL
Sbjct: 627  RFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 677

[198][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
           RepID=C7TCR3_LACRG
          Length = 416

 Score =  130 bits (327), Expect = 7e-29
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 246 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIA 305

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 306 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRL 365

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 366 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415

[199][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
           RepID=A5I618_CLOBH
          Length = 361

 Score =  130 bits (327), Expect = 7e-29
 Identities = 68/170 (40%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EEVA+   + + ++  ++   
Sbjct: 191 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEVAKIMEMPVDKVREIMKIA 250

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D EA    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 251 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 310

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 311 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360

[200][TOP]
>UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
           RepID=A8UQQ5_9AQUI
          Length = 571

 Score =  130 bits (327), Expect = 7e-29
 Identities = 63/162 (38%), Positives = 109/162 (67%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   R+ +A K+L+ E GR P  EE+A+  G++  ++  VL + 
Sbjct: 401 AIADQARTIRIPVHMIETINRIIKASKRLFQELGREPTPEEIAKHLGMTPDKVRKVLRSA 460

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG +++    + I D      EE + ++ +++ LE+VL++L+ +E++++R+
Sbjct: 461 QEPISLETPIGDDEDTFLKDFIEDKSVPNPEEYVSRKLLREQLERVLETLSDKEREILRY 520

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKR 74
           R+G+ DG    L ++G+M  V+RERIRQIES A RKL++  R
Sbjct: 521 RYGLVDGTEYTLEQVGKMFNVTRERIRQIESKAIRKLRHPSR 562

[201][TOP]
>UniRef100_P55993 RNA polymerase sigma factor rpoD n=1 Tax=Helicobacter pylori
            RepID=RPOD_HELPY
          Length = 671

 Score =  130 bits (327), Expect = 7e-29
 Identities = 68/171 (39%), Positives = 108/171 (63%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559  SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
            +++DQ+RTIR+P HM++   R+ +  ++   ENG+ PD E VAE  GLS+ ++  V+   
Sbjct: 499  AIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVT 558

Query: 379  KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
            K P SLE  +G + + K  + + D    ++ + ++++ +K  +E VLD LN REK VIR 
Sbjct: 559  KEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRM 618

Query: 199  RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
            RFG +DD   + L EIG+ L V+RER+RQIES A +KL++ +     + YL
Sbjct: 619  RFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 669

[202][TOP]
>UniRef100_UPI0001853CA1 RNA polymerase sigma factor RpoD n=1 Tax=Helicobacter pylori
           HPKX_438_AG0C1 RepID=UPI0001853CA1
          Length = 319

 Score =  130 bits (326), Expect = 9e-29
 Identities = 68/171 (39%), Positives = 108/171 (63%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM++   R+ +  ++   ENG+ PD E VAE  GLS+ ++  V+   
Sbjct: 147 AIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVT 206

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K P SLE  +G + + K  + + D    ++ + ++++ +K  +E VLD LN REK VIR 
Sbjct: 207 KEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIESVLDQLNEREKAVIRM 266

Query: 199 RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG +DD   + L EIG+ L V+RER+RQIES A +KL++ +     + YL
Sbjct: 267 RFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 317

[203][TOP]
>UniRef100_B2URS0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori Shi470
            RepID=B2URS0_HELPS
          Length = 661

 Score =  130 bits (326), Expect = 9e-29
 Identities = 68/171 (39%), Positives = 108/171 (63%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559  SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
            +++DQ+RTIR+P HM++   R+ +  ++   ENG+ PD E VAE  GLS+ ++  V+   
Sbjct: 489  AIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVT 548

Query: 379  KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
            K P SLE  +G + + K  + + D    ++ + ++++ +K  +E VLD LN REK VIR 
Sbjct: 549  KEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIESVLDQLNEREKAVIRM 608

Query: 199  RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
            RFG +DD   + L EIG+ L V+RER+RQIES A +KL++ +     + YL
Sbjct: 609  RFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 659

[204][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
           255-15 RepID=B1YL80_EXIS2
          Length = 361

 Score =  130 bits (326), Expect = 9e-29
 Identities = 64/170 (37%), Positives = 108/170 (63%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+++   ++ +++  +L   
Sbjct: 191 AIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEISKEMEITPEKVREILKIA 250

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A   ++    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 251 QEPVSLETPIGEEDDSHLGDFIEDQDATAPQDAAAYELLKEQLEDVLDTLTDREENVLRL 310

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 311 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 360

[205][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
           Ice1 RepID=B0TG57_HELMI
          Length = 371

 Score =  130 bits (326), Expect = 9e-29
 Identities = 67/170 (39%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   + ++R+  ++   
Sbjct: 201 AIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPMPEEIAKEMDIPVERVREIMKIA 260

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ LE+VL++L  RE +V+R 
Sbjct: 261 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRL 320

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 321 RFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 370

[206][TOP]
>UniRef100_A7I1A4 RNA polymerase sigma factor n=1 Tax=Campylobacter hominis ATCC
           BAA-381 RepID=A7I1A4_CAMHC
          Length = 624

 Score =  130 bits (326), Expect = 9e-29
 Identities = 68/173 (39%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   R+ +  ++   ENG+ PD   +A+  GLS+ ++  V+   
Sbjct: 452 AIADQARTIRIPIHMIETINRINKINRKYVQENGKEPDITILAKEVGLSIDKIKQVIKIT 511

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K P SLE  +G   + K  + + D    +  +Q++K  +K+ ++KVLD LN RE+ VIR 
Sbjct: 512 KEPISLEAPVGNEDDGKFGDFVEDKGTISPIDQILKNDLKEQIDKVLDQLNERERAVIRM 571

Query: 199 RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYLVS 44
           RFG +DD   + L EIG+ L V+RER+RQIE+ A +KLK+ K     ++Y+ S
Sbjct: 572 RFGLLDDESDRTLEEIGKELSVTRERVRQIEASAIKKLKHPKVGRDLKKYIES 624

[207][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
           RepID=A0Q1P4_CLONN
          Length = 368

 Score =  130 bits (326), Expect = 9e-29
 Identities = 67/170 (39%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   + + ++  ++   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKIMEMPVDKVREIMKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D EA    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 258 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 318 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 367

[208][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
           RepID=O08332_STAAU
          Length = 368

 Score =  130 bits (326), Expect = 9e-29
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++ Q+RTIR+P HM+E   ++   ++QL  + GR P  EE+ E   L  +++  +L   
Sbjct: 198 AIAHQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA++  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367

[209][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
           13335 RepID=C8PAI1_9LACO
          Length = 382

 Score =  130 bits (326), Expect = 9e-29
 Identities = 65/170 (38%), Positives = 107/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +S  ++  +L   
Sbjct: 212 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMSTDKVREILKIA 271

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K+ LE+VLD+L  RE+ V+R 
Sbjct: 272 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRL 331

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DGR + L E+G + GV+RERIRQIE+ A RKL++  R++  + +L
Sbjct: 332 RFGLNDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 381

[210][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
           RepID=C7CSZ1_ENTFA
          Length = 368

 Score =  130 bits (326), Expect = 9e-29
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367

[211][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
           1873 RepID=C5VRR6_CLOBO
          Length = 368

 Score =  130 bits (326), Expect = 9e-29
 Identities = 67/170 (39%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   + + ++  ++   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKIMEMPVDKVREIMKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D EA    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 258 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 318 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 367

[212][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
           Eklund RepID=B1BDC8_CLOBO
          Length = 368

 Score =  130 bits (326), Expect = 9e-29
 Identities = 67/170 (39%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   + + ++  ++   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKIMEMPVDKVREIMKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D EA    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 258 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 318 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 367

[213][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
           RepID=RPOD_ENTFA
          Length = 368

 Score =  130 bits (326), Expect = 9e-29
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367

[214][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
           DSM 15176 RepID=UPI0001966A7F
          Length = 364

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   +VK+   QL  E G  P  EE+AE   +S+ ++  ++   
Sbjct: 194 AIADQARTIRIPVHMVETINKVKKVSSQLLHEYGHDPSAEEIAERLDMSVDKVREIMRVA 253

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E   +  +K+ L  VL +L PRE++V+R 
Sbjct: 254 QEPVSLETPIGEEEDSHLGDFIPDDDAPVPAEAASQTLLKEQLADVLKTLTPREEKVLRL 313

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 314 RFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDFL 363

[215][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
           J2-071 RepID=UPI0000F53BBC
          Length = 374

 Score =  129 bits (325), Expect = 1e-28
 Identities = 65/170 (38%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++ L  + GR P  EE+ E   L  +++  +L   
Sbjct: 204 AIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIA 263

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 323

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G + GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 324 RFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373

[216][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
          Length = 372

 Score =  129 bits (325), Expect = 1e-28
 Identities = 65/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++Q   + GR P+ EE+A    L +K++   L   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRIQRQFLQDLGRDPEPEEIAAEMDLPVKKVREALKVA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A + E+    + +K  L +VLD+L  RE+ V+R 
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDREENVLRL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDG  + L E+G + GV+RERIRQIE+ A RKL++  R++  + +L
Sbjct: 322 RFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLRDFL 371

[217][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
           RepID=A5N6R2_CLOK5
          Length = 354

 Score =  129 bits (325), Expect = 1e-28
 Identities = 68/170 (40%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EEVA+   + + ++  ++   
Sbjct: 184 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHAEEVAKIMEMPVDKVREIMKIA 243

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D EA    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 244 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 303

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 304 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 353

[218][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
           SI RepID=A5D3U6_PELTS
          Length = 363

 Score =  129 bits (325), Expect = 1e-28
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  E GR P  EE+A+   ++  ++  +L   
Sbjct: 193 AIADQARTIRIPVHMVETINKLVRVQRQLLQELGRDPSPEEIAKEMNITEDKVREILKIA 252

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D EA    E+     +++ L++VL +L  RE++V+R 
Sbjct: 253 QEPVSLETPIGEEEDSHLGDFIEDHEARAPAEEASFTLLREQLDEVLKTLTEREQRVLRL 312

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+   RKL++  R+   + YL
Sbjct: 313 RFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 362

[219][TOP]
>UniRef100_C9AAM5 RNA polymerase sigma-43 factor n=3 Tax=Enterococcus casseliflavus
           RepID=C9AAM5_ENTCA
          Length = 368

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 318 RFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367

[220][TOP]
>UniRef100_C8ZYV7 RNA polymerase sigma-43 factor n=1 Tax=Enterococcus gallinarum EG2
           RepID=C8ZYV7_ENTGA
          Length = 368

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     L  +++  +L   
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  E    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 318 RFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367

[221][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
           RepID=C8P839_9LACO
          Length = 380

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 210 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIA 269

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + MKK LE VLD+L  RE+ V+R 
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379

[222][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
           subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
          Length = 357

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  E GR P  EE+A+  G+  +++  ++   
Sbjct: 187 AIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPTPEELAKEMGMPEEKVREIMKIA 246

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 247 QEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTMLKEQLMDVLDTLTPREEKVLRL 306

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 307 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356

[223][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
           RepID=B0K6Y0_THEPX
          Length = 357

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  E GR P  EE+A+  G+  +++  ++   
Sbjct: 187 AIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPTPEELAKEMGMPEEKVREIMKIA 246

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 247 QEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTMLKEQLMDVLDTLTPREEKVLRL 306

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 307 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356

[224][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
           RepID=C2EX53_LACRE
          Length = 380

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 210 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIA 269

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + MKK LE VLD+L  RE+ V+R 
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379

[225][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
           49540 RepID=C2ESB4_9LACO
          Length = 380

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 210 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIA 269

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + MKK LE VLD+L  RE+ V+R 
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379

[226][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
           RepID=A5VJI3_LACRD
          Length = 380

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 210 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIA 269

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + MKK LE VLD+L  RE+ V+R 
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379

[227][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
          Length = 368

 Score =  129 bits (325), Expect = 1e-28
 Identities = 67/170 (39%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    L+ +++  +    
Sbjct: 198 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMDLTPEKVREIQKIA 257

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA    +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIPDDEAPAPADAAAYELLKEQLEDVLDTLTEREENVLRL 317

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 367

[228][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
           RepID=B3XRX4_LACRE
          Length = 380

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 210 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIA 269

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + MKK LE VLD+L  RE+ V+R 
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379

[229][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
           27755 RepID=B0G307_9FIRM
          Length = 382

 Score =  129 bits (325), Expect = 1e-28
 Identities = 67/170 (39%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A    + ++R+  +L   
Sbjct: 212 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVERVREILKIS 271

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D       E   +  +K+ L++VLD+L  RE++V+R 
Sbjct: 272 QEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRL 331

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFGMDDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 332 RFGMDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 381

[230][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
           RepID=RPOD_LISMO
          Length = 374

 Score =  129 bits (325), Expect = 1e-28
 Identities = 65/170 (38%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++ L  + GR P  EE+ E   L  +++  +L   
Sbjct: 204 AIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIA 263

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 323

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G + GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 324 RFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373

[231][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
          Length = 374

 Score =  129 bits (325), Expect = 1e-28
 Identities = 65/170 (38%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++ L  + GR P  EE+ E   L  +++  +L   
Sbjct: 204 AIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIA 263

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 323

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G + GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 324 RFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373

[232][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
           RepID=RPOD_CLOAB
          Length = 378

 Score =  129 bits (325), Expect = 1e-28
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   + + ++  ++   
Sbjct: 208 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKIMDMPVDKVREIMKIA 267

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D EA    +    + +K+ L K+L++L PRE++V+R 
Sbjct: 268 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPADAAAFRMLKEQLLKILNTLTPREEKVLRL 327

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 328 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 377

[233][TOP]
>UniRef100_Q17VT9 RNA polymerase sigma factor n=1 Tax=Helicobacter acinonychis str.
           Sheeba RepID=Q17VT9_HELAH
          Length = 659

 Score =  129 bits (324), Expect = 2e-28
 Identities = 68/171 (39%), Positives = 108/171 (63%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM++   R+ +  ++   ENG+ PD E VAE  GLS+ ++  V+   
Sbjct: 487 AIADQARTIRIPIHMIDTINRINKVMRKHMQENGKEPDLEVVAEEVGLSLDKVKNVIKVT 546

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K P SLE  +G + + K  + + D    ++ + ++++ +K  +E VLD LN REK VIR 
Sbjct: 547 KEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIEGVLDQLNEREKAVIRM 606

Query: 199 RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG +DD   + L EIG+ L V+RER+RQIES A +KL++ +     + YL
Sbjct: 607 RFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 657

[234][TOP]
>UniRef100_A6Q2X9 RNA polymerase sigma factor n=1 Tax=Nitratiruptor sp. SB155-2
           RepID=A6Q2X9_NITSB
          Length = 608

 Score =  129 bits (324), Expect = 2e-28
 Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   R+ +  ++   E G+ PD E +AE  G+ ++++  V+   
Sbjct: 436 AIADQARTIRIPIHMIETINRINKIVRKHLQETGKEPDVETIAEEVGMPVEKVKNVIKIT 495

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K P SLE  IG  ++ K  + I D  A    E ++K+ MK  +E++L++LN REK V+R 
Sbjct: 496 KEPVSLEAPIGNEEDGKFGDFIEDKNAPNPLEVIMKEDMKSKIEEILENLNEREKAVVRM 555

Query: 199 RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG M D   + L EIG+ L V+RER+RQIES A +KLK+ K     + Y+
Sbjct: 556 RFGLMPDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKIKNYI 606

[235][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
           RepID=A4J7B9_DESRM
          Length = 367

 Score =  129 bits (324), Expect = 2e-28
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+A+   +S +++  +L   
Sbjct: 197 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAKEMDISGEKVREILKIA 256

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E+     +++ L++VL +L  RE++V+R 
Sbjct: 257 QEPVSLETPIGEEEDSHLGDFIEDADARAPAEEASFTLLREQLDEVLKTLTDREQKVLRL 316

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+   RKL++  R+   + YL
Sbjct: 317 RFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 366

[236][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
           RepID=P77870_HELMO
          Length = 333

 Score =  129 bits (324), Expect = 2e-28
 Identities = 66/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P+ EE+A+   + + R+  ++   
Sbjct: 163 AIADQARTIRIPVHMVETINKLIRVSRQLLQEFGREPNPEEIAKEMDIPVDRVREIMKIA 222

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ LE+VL++L  RE +V+R 
Sbjct: 223 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRL 282

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + Y+
Sbjct: 283 RFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYV 332

[237][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Clostridium papyrosolvens DSM 2782
           RepID=C7IFS3_9CLOT
          Length = 359

 Score =  129 bits (324), Expect = 2e-28
 Identities = 66/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  +E+A+  G+S+ ++  ++   
Sbjct: 189 AIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPDEIAKEIGMSVDKVREIMKIS 248

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L  VLD+L  RE++V+R 
Sbjct: 249 QEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTLLKEQLIDVLDTLTAREEKVLRL 308

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 309 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358

[238][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
           RepID=C6PMA8_9THEO
          Length = 357

 Score =  129 bits (324), Expect = 2e-28
 Identities = 66/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  E GR P  EE+A+  G+  +++  ++   
Sbjct: 187 AIADQARTIRIPVHMVETINKLIRIQRQLLQELGREPTPEELAKEMGMPEEKVREIMKIA 246

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A    E      +K+ L  VLD+L PRE++V+R 
Sbjct: 247 QEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTMLKEQLMDVLDTLTPREEKVLRL 306

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+   V+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 307 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356

[239][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
           RepID=B2GBZ9_LACF3
          Length = 380

 Score =  129 bits (324), Expect = 2e-28
 Identities = 66/170 (38%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P  EE+     +  +++  +L   
Sbjct: 210 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMDTQKVRDILKIS 269

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +A +  +    + MKK LE VLD+L  RE+ V+R 
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G + GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 330 RFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379

[240][TOP]
>UniRef100_B4WSK5 RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1
           Tax=Synechococcus sp. PCC 7335 RepID=B4WSK5_9SYNE
          Length = 298

 Score =  129 bits (324), Expect = 2e-28
 Identities = 65/170 (38%), Positives = 113/170 (66%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++++SRTIRLP H+ E   ++K+A++Q   ++GR P   E+A+ATG ++K++   L   
Sbjct: 130 AIAEKSRTIRLPIHITEKLNKIKKAQRQFTQQHGRTPTASEIAQATGFTIKQVREYLDRS 189

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SL+ K+G NQ+ +  +++ D + +T ++      +K DL++++  L P+++QVI  
Sbjct: 190 RQPLSLDLKVGDNQDTQLGDLLED-DGQTPDDYATASSLKSDLKRIMADLTPQQQQVIAL 248

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DG+   L +IG ML +SRER+RQIE  A  KL  +KR S  ++YL
Sbjct: 249 RFGLEDGKNMTLAKIGAMLDISRERVRQIEREALTKL--RKRQSDMREYL 296

[241][TOP]
>UniRef100_UPI00016C0A4F RNA polymerase, sigma 70 subunit, RpoD family protein n=1
           Tax=Epulopiscium sp. 'N.t. morphotype B'
           RepID=UPI00016C0A4F
          Length = 364

 Score =  129 bits (323), Expect = 2e-28
 Identities = 65/170 (38%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  E GR P  EE+A    LS+ ++  ++   
Sbjct: 194 AIADQARTIRIPVHMVETINKLMRIQRQLLQELGRDPQPEEIAREMELSVNKVREIMKIS 253

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P +LE  IG  ++    + +AD +A    E      +K+ L +VLD+L  RE++V++ 
Sbjct: 254 QEPVALETPIGEEEDTNLGDFLADEDAPAPAEAAAFTLLKEQLIEVLDTLTDREQKVLKL 313

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G    V+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 314 RFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLRDYL 363

[242][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8EPY6_OCEIH
          Length = 380

 Score =  129 bits (323), Expect = 2e-28
 Identities = 66/170 (38%), Positives = 104/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++ L  + GR P  EE+ E   L   ++  +L   
Sbjct: 210 AIADQARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIGEEMELGPDKVRDILKIA 269

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EA +  +    + +K+ LE VLD+L  RE+ V+R 
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHAAYELLKEQLEDVLDTLTDREENVLRL 329

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 379

[243][TOP]
>UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
           19977 RepID=B1MCY5_MYCA9
          Length = 323

 Score =  129 bits (323), Expect = 2e-28
 Identities = 63/168 (37%), Positives = 107/168 (63%)
 Frame = -2

Query: 556 LSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPK 377
           ++DQSRTIRLP H++E   ++   +++L+   GR   DEE+AE +G+ ++++  +L   +
Sbjct: 154 MADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREASDEELAEESGIPVEKIGDLLDHSR 213

Query: 376 APRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWR 197
            P SL+  +G ++     + I D EA +AE  +I + +  D+  VL +L+ RE+QVIR R
Sbjct: 214 DPVSLDMPVGTDEEAPLGDFIEDTEAMSAENAVIAELLHSDVRSVLATLDEREQQVIRLR 273

Query: 196 FGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQY 53
           +G+DDG+ + L +IG++ G+SRER+RQIE     KL++  R    + Y
Sbjct: 274 YGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLRHGDRAERLRSY 321

[244][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
           RepID=A1T7W4_MYCVP
          Length = 329

 Score =  129 bits (323), Expect = 2e-28
 Identities = 63/168 (37%), Positives = 108/168 (64%)
 Frame = -2

Query: 556 LSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPK 377
           ++DQSRTIRLP H++E   ++   +++++   GR   DEE+A  +G+ +++++ +L   +
Sbjct: 160 MADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPVEKITDLLEHSR 219

Query: 376 APRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWR 197
            P SL+  +G ++     + I D EA +AE  +I + +  D+  VL +L+ RE+QVIR R
Sbjct: 220 DPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLR 279

Query: 196 FGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQY 53
           FG+DDG+ + L +IG++ G+SRER+RQIE     KL+N +R    + Y
Sbjct: 280 FGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 327

[245][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
           delbrueckii subsp. lactis RepID=Q71HU9_LACDL
          Length = 167

 Score =  129 bits (323), Expect = 2e-28
 Identities = 66/166 (39%), Positives = 103/166 (62%)
 Frame = -2

Query: 547 QSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPR 368
           Q+RTIR+P HM+E   ++   ++QL  + GR P+ EE+A    L +K++  VL   + P 
Sbjct: 1   QARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAEMDLPVKKVREVLKVAQEPV 60

Query: 367 SLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGM 188
           SLE  IG   +    + I D +A + E+    + +K  L +VLD+L  RE+ V+R RFG+
Sbjct: 61  SLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDREENVLRLRFGL 120

Query: 187 DDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           DDG  + L E+G + GV+RERIRQIE+ A RKL++  R++  + +L
Sbjct: 121 DDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFL 166

[246][TOP]
>UniRef100_C5EYF0 RNA polymerase sigma factor n=1 Tax=Helicobacter pullorum MIT
           98-5489 RepID=C5EYF0_9HELI
          Length = 615

 Score =  129 bits (323), Expect = 2e-28
 Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 1/171 (0%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   R+ +  ++   E G+ PD E++AE  GL + ++  V+   
Sbjct: 443 AIADQARTIRIPIHMIETINRINKIMRKYLQEEGKEPDIEKIAEEVGLPVDKVKNVIKIT 502

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           K P SLE  IG  ++ K  + + D  +    + ++K+ +K  ++ VLD LN REK VIR 
Sbjct: 503 KEPISLEAPIGNGEDGKFGDFVEDKASLGPMDSILKEDLKAQIDDVLDQLNEREKAVIRM 562

Query: 199 RFG-MDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG +DD   + L EIG+ L V+RER+RQIES A +KLK+ K     + Y+
Sbjct: 563 RFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 613

[247][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
          Length = 316

 Score =  128 bits (322), Expect = 3e-28
 Identities = 64/170 (37%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           S++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+ +   +S +++  +    
Sbjct: 146 SIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEEIGKEMDISPEKVREIQKVS 205

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  +G   +    + I D +A    +    + +K+ LE+VLD+L  RE+ V+R 
Sbjct: 206 QEPVSLETPVGEESDSNLGDFIEDQDALAPADAAAFELLKEQLEEVLDTLTEREENVLRL 265

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DGR + L E+G++ GV+RERIRQIE+ A RKL++  R+   + +L
Sbjct: 266 RFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 315

[248][TOP]
>UniRef100_Q1G9X1 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842 RepID=Q1G9X1_LACDA
          Length = 372

 Score =  128 bits (322), Expect = 3e-28
 Identities = 64/170 (37%), Positives = 105/170 (61%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++QL  + GR P+ EE+A    L +K++   L   
Sbjct: 202 AIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAEMDLPVKKVREALKVA 261

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D +  + E+    + ++  L +VLD+L  RE+ V+R 
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDKDTTSPEQHAASEMLRDQLAEVLDTLTDREENVLRL 321

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDG  + L E+G + GV+RERIRQIE+ A RKL++  R++  + +L
Sbjct: 322 RFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLRDFL 371

[249][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
           wolfei str. Goettingen RepID=Q0AWU4_SYNWW
          Length = 358

 Score =  128 bits (322), Expect = 3e-28
 Identities = 65/170 (38%), Positives = 106/170 (62%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++   ++ L    GR P   EVAE   +++ R+  ++   
Sbjct: 188 AIADQARTIRIPVHMVETINKLSRVQRSLLQILGREPTPAEVAEEMDIAVDRVIEIMKVA 247

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG   +    + I D EAE+ EE      +++ L+ +L++L  RE++V+R 
Sbjct: 248 QEPVSLETPIGEEDDSHLGDFITDEEAESPEESASFVLLREHLDGILNTLTEREEKVLRL 307

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG+DDGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + Y+
Sbjct: 308 RFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYI 357

[250][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
           RepID=B8CXH1_HALOH
          Length = 358

 Score =  128 bits (322), Expect = 3e-28
 Identities = 65/170 (38%), Positives = 103/170 (60%)
 Frame = -2

Query: 559 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 380
           +++DQ+RTIR+P HM+E   ++    +QL  E GR P  EE+ E  G+  +++  +L   
Sbjct: 188 AIADQARTIRIPVHMVETINKLIRVSRQLLQEKGREPTPEEIGEEMGMPAEKVREILKIA 247

Query: 379 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 200
           + P SLE  IG  ++    + I D +A           +++ L+ VLD+L  REK+V+  
Sbjct: 248 QEPVSLETPIGEEEDSHLGDFIEDEDAPAPASAASFTLLREQLDDVLDTLTDREKRVLEL 307

Query: 199 RFGMDDGRMKXLPEIGEMLGVSRERIRQIESCAFRKLKNKKRNSTSQQYL 50
           RFG++DGR + L E+G+  GV+RERIRQIE+ A RKL++  R+   + YL
Sbjct: 308 RFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357