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[1][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 261 bits (666), Expect = 2e-68
Identities = 127/132 (96%), Positives = 129/132 (97%)
Frame = -2
Query: 406 VIVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIH 227
VIVD TQHIANVTEPIQLCIGLQIERDRGYRINTL NFQDGSYNIDAIFMPVRNANHSIH
Sbjct: 128 VIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIH 187
Query: 226 SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVT 47
SYVNGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN+EHKVT
Sbjct: 188 SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVT 247
Query: 46 LPLSTCHDLLAK 11
LPL TCHDLLAK
Sbjct: 248 LPLFTCHDLLAK 259
[2][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 232 bits (591), Expect = 1e-59
Identities = 113/131 (86%), Positives = 118/131 (90%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI LCI LQIER RGYRI TL N QDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
YVNGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE LNFEN++HKVTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKVTL 248
Query: 43 PLSTCHDLLAK 11
PL T HD L K
Sbjct: 249 PLFTFHDRLLK 259
[3][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 228 bits (582), Expect = 1e-58
Identities = 110/131 (83%), Positives = 118/131 (90%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIANVTEP+ LCI L+IER+RGYRI TL NFQDGSY IDA FMPVRN NHSIHS
Sbjct: 129 IVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
YVNGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N EN++HKVTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTL 248
Query: 43 PLSTCHDLLAK 11
PL T HD+LAK
Sbjct: 249 PLFTFHDILAK 259
[4][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 228 bits (582), Expect = 1e-58
Identities = 110/131 (83%), Positives = 118/131 (90%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIANVTEP+ LCI L+IER+RGYRI TL NFQDGSY IDA FMPVRN NHSIHS
Sbjct: 129 IVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
YVNGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N EN++HKVTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTL 248
Query: 43 PLSTCHDLLAK 11
PL T HD+LAK
Sbjct: 249 PLFTFHDILAK 259
[5][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 226 bits (577), Expect = 5e-58
Identities = 107/127 (84%), Positives = 116/127 (91%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
++D TQHIAN+TEPI LCI LQIER RGYRI TL N QDGSY IDA+FMPVRNANHSIHS
Sbjct: 128 VIDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHS 187
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
YVNGN+KQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE LNFEN++HK+TL
Sbjct: 188 YVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKMTL 247
Query: 43 PLSTCHD 23
PL T HD
Sbjct: 248 PLFTFHD 254
[6][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 219 bits (558), Expect = 8e-56
Identities = 107/131 (81%), Positives = 117/131 (89%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQ+IAN+TEPI LCIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ EN+++KVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQYKVTL 248
Query: 43 PLSTCHDLLAK 11
P T HD LAK
Sbjct: 249 PFFTFHDRLAK 259
[7][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 219 bits (557), Expect = 1e-55
Identities = 106/131 (80%), Positives = 115/131 (87%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD QHIANVTEP+ LCI L+IER+RGYRI TL NFQDGSY+IDA FMPVRN N+SIHS
Sbjct: 129 IVDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
YVNGNEKQEILFL+IWTNGSLTPKEALYEAS+NLIDLFIPFLHAEEE N E +HKVTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNLEKKKHKVTL 248
Query: 43 PLSTCHDLLAK 11
PL T HD+L K
Sbjct: 249 PLFTFHDILVK 259
[8][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 216 bits (550), Expect = 6e-55
Identities = 104/131 (79%), Positives = 115/131 (87%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI LC+ L++ER+RGYRI TL N QD SY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+KLN EN++ KVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNLENNQQKVTL 248
Query: 43 PLSTCHDLLAK 11
PL T HD K
Sbjct: 249 PLFTFHDRFVK 259
[9][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 215 bits (548), Expect = 1e-54
Identities = 103/131 (78%), Positives = 116/131 (88%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD QHIANVTEP+ LCI L+IER+RGYRI TL NFQDGSY+IDA FMPVRN N+SIHS
Sbjct: 129 IVDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
YVNGNEKQEILFL+IWTNGSLTPKEALYEAS+NLI+LFIPFLHAEE+ + E ++HKVTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHLEKNQHKVTL 248
Query: 43 PLSTCHDLLAK 11
PL T HD+L K
Sbjct: 249 PLFTFHDILVK 259
[10][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 213 bits (541), Expect = 7e-54
Identities = 103/131 (78%), Positives = 114/131 (87%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++TE I LCIGLQIER+RGYRI NFQDGSY IDA+FMPVRNANHS+HS
Sbjct: 129 IIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E ++HKVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTL 248
Query: 43 PLSTCHDLLAK 11
PL T H L K
Sbjct: 249 PLFTFHGRLTK 259
[11][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 209 bits (533), Expect = 6e-53
Identities = 102/131 (77%), Positives = 110/131 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI LCIGLQIER+RGY I T NF DGSY ID +FMPVRN NHSIHS
Sbjct: 131 IVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPVRNVNHSIHS 190
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + EN +HKVTL
Sbjct: 191 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHLENSQHKVTL 250
Query: 43 PLSTCHDLLAK 11
P HD L K
Sbjct: 251 PFFPFHDKLTK 261
[12][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 209 bits (531), Expect = 1e-52
Identities = 103/131 (78%), Positives = 112/131 (85%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA + EPI LCIGLQIER+RGY I NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 123 IVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHS 182
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNE+QEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E ++HK TL
Sbjct: 183 YGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTL 242
Query: 43 PLSTCHDLLAK 11
P T HD LAK
Sbjct: 243 PPLTFHDRLAK 253
[13][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 209 bits (531), Expect = 1e-52
Identities = 103/131 (78%), Positives = 112/131 (85%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA + EPI LCIGLQIER+RGY I NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNE+QEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E ++HK TL
Sbjct: 189 YGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTL 248
Query: 43 PLSTCHDLLAK 11
P T HD LAK
Sbjct: 249 PPLTFHDRLAK 259
[14][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 208 bits (530), Expect = 1e-52
Identities = 105/133 (78%), Positives = 115/133 (86%), Gaps = 2/133 (1%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+ EPI LCI L+IER+RGY I T NFQD SY +DAIFMPVRN NHSIHS
Sbjct: 129 IVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF--ENHEHKV 50
YVNGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEEK NF +N++ KV
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKV 248
Query: 49 TLPLSTCHDLLAK 11
TLPL T H+ LAK
Sbjct: 249 TLPLFTFHEKLAK 261
[15][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 208 bits (529), Expect = 2e-52
Identities = 103/131 (78%), Positives = 113/131 (86%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI L IGLQIER+RGY I T NFQDGSY IDA+FMPV+NANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNGSLTPKEAL+EASRNLI+LFIPFLHAEEEK EN++HKVTL
Sbjct: 189 YGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLENNQHKVTL 248
Query: 43 PLSTCHDLLAK 11
P HD LAK
Sbjct: 249 PFFPFHDRLAK 259
[16][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 207 bits (527), Expect = 3e-52
Identities = 100/130 (76%), Positives = 114/130 (87%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQ+IAN+TEPI LCI L+I+RDRGYR+ +TN QDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +NFE +++K TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINFEENKNKFTL 248
Query: 43 PLSTCHDLLA 14
P T D L+
Sbjct: 249 PPLTFQDRLS 258
[17][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 206 bits (525), Expect = 5e-52
Identities = 100/131 (76%), Positives = 110/131 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQH+A++TEPI LCIGLQIER+RGY I T NF DGSY IDA+FMPVRNANHSIH
Sbjct: 131 IVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHC 190
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y N NEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ EN++H VTL
Sbjct: 191 YGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLENNQHDVTL 250
Query: 43 PLSTCHDLLAK 11
P HD L K
Sbjct: 251 PFFPFHDRLVK 261
[18][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 206 bits (523), Expect = 9e-52
Identities = 100/129 (77%), Positives = 111/129 (86%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI LCIGLQI RDRGYR TN Q+GSY IDA+ MPVRNANHSIHS
Sbjct: 129 IVDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NF+ ++++ TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFKENKNRFTL 248
Query: 43 PLSTCHDLL 17
P+ T D L
Sbjct: 249 PIFTFQDRL 257
[19][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 206 bits (523), Expect = 9e-52
Identities = 100/130 (76%), Positives = 113/130 (86%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI LCIGLQIERDRGYR+ T N+QDGSY ID +FMPVRNANHSIHS
Sbjct: 129 IVDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NG EKQEILFL+IWTNGSLTPKEALYEASRNLI+LFIPFLHAEE+++ E+ E+ T+
Sbjct: 189 YGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILLEDSENISTV 248
Query: 43 PLSTCHDLLA 14
PL T H+ LA
Sbjct: 249 PLFTFHNELA 258
[20][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 205 bits (522), Expect = 1e-51
Identities = 103/131 (78%), Positives = 112/131 (85%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI LCI LQIER+RGYRI T NFQ+GSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
YVNGNE QEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPF HAEE + EN++HK TL
Sbjct: 189 YVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HLENNQHKGTL 245
Query: 43 PLSTCHDLLAK 11
PL H LAK
Sbjct: 246 PLFNFHGRLAK 256
[21][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 205 bits (521), Expect = 1e-51
Identities = 98/131 (74%), Positives = 113/131 (86%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++ EPI L IGL+IER+RGY + NFQDGSY+IDA+FMPVRNANHS+HS
Sbjct: 129 IIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E ++HK+TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLEKNQHKITL 248
Query: 43 PLSTCHDLLAK 11
PL HD LAK
Sbjct: 249 PLFAFHDRLAK 259
[22][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 205 bits (521), Expect = 1e-51
Identities = 98/131 (74%), Positives = 113/131 (86%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++ EPI L IGL+IER+RGY + NFQDGSY+IDA+FMPVRNANHS+HS
Sbjct: 129 IIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E ++HK+TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHLEKNQHKITL 248
Query: 43 PLSTCHDLLAK 11
PL HD LAK
Sbjct: 249 PLFAFHDRLAK 259
[23][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 205 bits (521), Expect = 1e-51
Identities = 99/130 (76%), Positives = 112/130 (86%)
Frame = -2
Query: 400 VDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSY 221
VD TQHIAN+TEPI CI L+IER+RGYR+ T N QDGSY IDA+FMPVRNANHSIHSY
Sbjct: 130 VDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHSIHSY 189
Query: 220 VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 41
NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHA+EE + E++++ VTLP
Sbjct: 190 ANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLEDNQNGVTLP 249
Query: 40 LSTCHDLLAK 11
T HD LAK
Sbjct: 250 FFTFHDRLAK 259
[24][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 204 bits (520), Expect = 2e-51
Identities = 100/131 (76%), Positives = 114/131 (87%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI LCIGLQ+ER+RGY I NFQDGS+ IDA+FMPVRN NHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDL IPFLHA EE +N E+++HKV+L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHA-EENVNLEDNQHKVSL 247
Query: 43 PLSTCHDLLAK 11
PL T H+ LA+
Sbjct: 248 PLFTFHNRLAE 258
[25][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 204 bits (519), Expect = 2e-51
Identities = 101/133 (75%), Positives = 112/133 (84%), Gaps = 2/133 (1%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDA--IFMPVRNANHSI 230
IVD TQHIAN+TEPI LCI LQIER RGYR T+ N QDGSY ID +FMPV +AN+SI
Sbjct: 129 IVDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFMPVIHANYSI 188
Query: 229 HSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKV 50
HSY+N NEKQEILFL+IWTNGSLTPKEALYEA+RNLIDLFIPFLHAEEE +FEN++HKV
Sbjct: 189 HSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENFHFENNQHKV 248
Query: 49 TLPLSTCHDLLAK 11
TLPL HD L K
Sbjct: 249 TLPLFAFHDRLVK 261
[26][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 204 bits (519), Expect = 2e-51
Identities = 99/131 (75%), Positives = 112/131 (85%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++ EPI LCIGLQIER+RGY I + NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y N NEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE L+ N+++ VT
Sbjct: 189 YGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGNNKYNVTF 248
Query: 43 PLSTCHDLLAK 11
PL T H LAK
Sbjct: 249 PLFTFHKKLAK 259
[27][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 204 bits (519), Expect = 2e-51
Identities = 99/132 (75%), Positives = 113/132 (85%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++TEPI LCIGLQIER+RGY + T N QDG Y IDA+FMPVRNANHSIHS
Sbjct: 129 IIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHA EE +++++KV L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFILKDNQNKVAL 248
Query: 43 PLSTCHDLLAKR 8
PL T HD LAK+
Sbjct: 249 PLFTFHDRLAKQ 260
[28][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 204 bits (518), Expect = 3e-51
Identities = 99/131 (75%), Positives = 114/131 (87%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEP LCIGLQIER+RGYR+ T Q+GSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ + E+++++VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIILEDNQNRVTL 248
Query: 43 PLSTCHDLLAK 11
P T HD LAK
Sbjct: 249 PFFTFHDGLAK 259
[29][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 203 bits (517), Expect = 4e-51
Identities = 97/127 (76%), Positives = 111/127 (87%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQ+IA++TEPI LCI LQIERDRGYRI T N+QDGSY IDA+ MPVRNANHSIHS
Sbjct: 129 IVDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGS TPKEALYEASRNLIDLF+PFLHAEE+ +N E+++++ T
Sbjct: 189 YGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINVEDNQNRATA 248
Query: 43 PLSTCHD 23
PL T HD
Sbjct: 249 PLFTFHD 255
[30][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 203 bits (517), Expect = 4e-51
Identities = 100/131 (76%), Positives = 111/131 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L ++++H V L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
Query: 43 PLSTCHDLLAK 11
T HD LAK
Sbjct: 249 SPFTFHDKLAK 259
[31][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 203 bits (517), Expect = 4e-51
Identities = 98/130 (75%), Positives = 113/130 (86%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
+VD TQHIA++TEPI LCIGLQI+RDRGYR+ T N QDGSY IDA+ MPVRNANHSIHS
Sbjct: 129 VVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGN+KQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +NFE ++++ T+
Sbjct: 189 YGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTV 248
Query: 43 PLSTCHDLLA 14
P T D LA
Sbjct: 249 PPFTFPDRLA 258
[32][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 203 bits (517), Expect = 4e-51
Identities = 98/130 (75%), Positives = 113/130 (86%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
+VD TQHIA++TEPI LCIGLQI+RDRGYR+ T N QDGSY IDA+ MPVRNANHSIHS
Sbjct: 129 VVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGN+KQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +NFE ++++ T+
Sbjct: 189 YGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTV 248
Query: 43 PLSTCHDLLA 14
P T D LA
Sbjct: 249 PPFTFPDRLA 258
[33][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 203 bits (516), Expect = 6e-51
Identities = 100/131 (76%), Positives = 111/131 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L ++++H V L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
Query: 43 PLSTCHDLLAK 11
T HD LAK
Sbjct: 249 SPFTFHDKLAK 259
[34][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 202 bits (515), Expect = 7e-51
Identities = 99/129 (76%), Positives = 111/129 (86%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI LCI LQI+RDRGYR+ + N QDGSY IDA+ MPVRNANHSIHS
Sbjct: 129 IVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NFE ++++ L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFPL 248
Query: 43 PLSTCHDLL 17
PL T + L
Sbjct: 249 PLFTFQNRL 257
[35][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 202 bits (514), Expect = 9e-51
Identities = 101/135 (74%), Positives = 114/135 (84%), Gaps = 4/135 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQ--DGSYNIDAIFMPVRNANHSI 230
I+D TQHIA++T+ I LCIGLQIER+RGYRI NFQ DGSY+IDA+FMPVRNANHS+
Sbjct: 129 IIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMPVRNANHSV 188
Query: 229 HSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN--FENHEH 56
HSY NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLID FIPFLHAEEE L+ E ++H
Sbjct: 189 HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLHLEIEKNQH 248
Query: 55 KVTLPLSTCHDLLAK 11
KVTLPL HD L K
Sbjct: 249 KVTLPLFCFHDKLTK 263
[36][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 202 bits (513), Expect = 1e-50
Identities = 98/131 (74%), Positives = 111/131 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++ EPI LCIGLQIER+RGY I + NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y N NEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE L+ +++ VT
Sbjct: 189 YGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGKNKYNVTF 248
Query: 43 PLSTCHDLLAK 11
PL T H LAK
Sbjct: 249 PLFTFHKKLAK 259
[37][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 201 bits (511), Expect = 2e-50
Identities = 98/131 (74%), Positives = 111/131 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILF++IWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ L ++++H V L
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
Query: 43 PLSTCHDLLAK 11
T HD LAK
Sbjct: 249 SPFTFHDKLAK 259
[38][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 201 bits (511), Expect = 2e-50
Identities = 98/131 (74%), Positives = 111/131 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILF++IWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ L ++++H V L
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
Query: 43 PLSTCHDLLAK 11
T HD LAK
Sbjct: 249 SPFTFHDKLAK 259
[39][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 201 bits (510), Expect = 3e-50
Identities = 98/129 (75%), Positives = 110/129 (85%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI L I LQ+ER+RGYRI T NFQDGSY ID +FMPVRN NHSIHS
Sbjct: 129 IVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVRNVNHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFL+AE+E + E+++ +VTL
Sbjct: 189 YSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLEDNQDRVTL 248
Query: 43 PLSTCHDLL 17
PL HD L
Sbjct: 249 PLFLFHDRL 257
[40][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 200 bits (509), Expect = 4e-50
Identities = 98/130 (75%), Positives = 112/130 (86%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI LCI LQIERDRGYR+ T N+QDGSY IDA+ MPVRNANHSIHS
Sbjct: 129 IVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y N NEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ + E++ ++ T+
Sbjct: 189 YGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVLEDNPNRFTV 248
Query: 43 PLSTCHDLLA 14
PL T HD LA
Sbjct: 249 PLFTFHDRLA 258
[41][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 200 bits (508), Expect = 5e-50
Identities = 99/129 (76%), Positives = 109/129 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI L I LQI+RDRGYR+ N QDGSY IDA+ MPVRNANHSIHS
Sbjct: 129 IVDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NFE ++++ TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFTL 248
Query: 43 PLSTCHDLL 17
P T D L
Sbjct: 249 PFLTFQDRL 257
[42][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 199 bits (507), Expect = 6e-50
Identities = 97/129 (75%), Positives = 110/129 (85%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEP+ L IGLQI+RDRGYR+ N QDGSY IDA+FMPVRNANHSI+S
Sbjct: 129 IVDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVRNANHSIYS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ +N E ++ + TL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLEENKSRFTL 248
Query: 43 PLSTCHDLL 17
PL T HD L
Sbjct: 249 PLFTFHDKL 257
[43][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 199 bits (507), Expect = 6e-50
Identities = 99/132 (75%), Positives = 112/132 (84%), Gaps = 1/132 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTN-FQDGSYNIDAIFMPVRNANHSIH 227
+VD TQHIA++TEPI+LCIGLQIER+RGY I T N +DGSY IDA+FMPVRNANHSIH
Sbjct: 129 VVDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRNANHSIH 188
Query: 226 SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVT 47
SY NGN+KQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ N++H V
Sbjct: 189 SYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLANNQHMVP 248
Query: 46 LPLSTCHDLLAK 11
LP T HD L K
Sbjct: 249 LPPFTFHDKLDK 260
[44][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 199 bits (506), Expect = 8e-50
Identities = 98/131 (74%), Positives = 111/131 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI LCI LQIER+RGYR+ T N Q+ SY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWT+GSLTPKEALYEASRNLIDLFIPFLHAEE+ E+++ +VTL
Sbjct: 189 YGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLEDNQSRVTL 248
Query: 43 PLSTCHDLLAK 11
P T HD L K
Sbjct: 249 PFFTFHDGLDK 259
[45][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 199 bits (506), Expect = 8e-50
Identities = 99/132 (75%), Positives = 111/132 (84%), Gaps = 1/132 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTN-FQDGSYNIDAIFMPVRNANHSIH 227
IVD TQHIA++ EPI LCIGLQIER+RGY I T N FQDGSY IDA+FMPVRNANHSIH
Sbjct: 129 IVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSIH 188
Query: 226 SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVT 47
SY NGNEKQEILFL+IWTNGSLTPKEAL++ASRNLIDLFIPFLH EEE L+ +++H V
Sbjct: 189 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLHLADNQHTVP 248
Query: 46 LPLSTCHDLLAK 11
LP T H+ L K
Sbjct: 249 LPPFTFHEKLTK 260
[46][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 199 bits (506), Expect = 8e-50
Identities = 98/131 (74%), Positives = 110/131 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI CIGLQIER+RGY + T NF+DGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+ EH + L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDGEHTIPL 248
Query: 43 PLSTCHDLLAK 11
+ HD +AK
Sbjct: 249 SPLSFHDKVAK 259
[47][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 199 bits (505), Expect = 1e-49
Identities = 99/131 (75%), Positives = 109/131 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI LCIGLQI+R+RGY I NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 103 IVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNANHSIHS 162
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EA RNLIDLFIPFLH EEE L E+++H V L
Sbjct: 163 YGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDNQHTVPL 222
Query: 43 PLSTCHDLLAK 11
T HD L K
Sbjct: 223 SPLTFHDKLDK 233
[48][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 199 bits (505), Expect = 1e-49
Identities = 95/131 (72%), Positives = 110/131 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +TEPI LCIGLQIER+RGY + +F+DGSY IDA+FMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNG+LTPKEAL+EASRNLI+LFIPFLH EEE EN++HKVTL
Sbjct: 189 YGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHKVTL 248
Query: 43 PLSTCHDLLAK 11
PL H+ L K
Sbjct: 249 PLFPFHNRLVK 259
[49][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 198 bits (504), Expect = 1e-49
Identities = 99/129 (76%), Positives = 110/129 (85%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI L I LQI+RDRGYRIN N QDGSY IDA+ MPVRNANHSIHS
Sbjct: 127 IVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNANHSIHS 186
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEE ++FE ++++ TL
Sbjct: 187 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHFEENKNRFTL 246
Query: 43 PLSTCHDLL 17
PL T + L
Sbjct: 247 PLFTFQNRL 255
[50][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 198 bits (504), Expect = 1e-49
Identities = 98/131 (74%), Positives = 110/131 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TE I CIGLQI+R+RGY I T NFQDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L ++++H V L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHTVPL 248
Query: 43 PLSTCHDLLAK 11
T HD LAK
Sbjct: 249 SPFTFHDKLAK 259
[51][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 198 bits (503), Expect = 2e-49
Identities = 96/133 (72%), Positives = 111/133 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI LCI LQI+RDRGYR+ T +Q+GSY IDA+ MPVRNANHSIHS
Sbjct: 129 IVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E++ ++ +
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRLEDNPNRFNI 248
Query: 43 PLSTCHDLLAKRN 5
P T HD LA N
Sbjct: 249 PFFTFHDGLANTN 261
[52][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 197 bits (501), Expect = 3e-49
Identities = 94/129 (72%), Positives = 109/129 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHSIHS
Sbjct: 129 IVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILF++IWTNGSLTPKEALYEASRNLI+LFIPFLH EEE EN++H+VTL
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 43 PLSTCHDLL 17
P+ H+ L
Sbjct: 249 PVFPFHNKL 257
[53][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 197 bits (501), Expect = 3e-49
Identities = 100/132 (75%), Positives = 111/132 (84%), Gaps = 1/132 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGS-YNIDAIFMPVRNANHSIH 227
IVD TQHIA++TEPI L IGLQIER RGY I T FQDG+ Y IDA+FMPVRNANHSI
Sbjct: 129 IVDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMPVRNANHSIQ 188
Query: 226 SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVT 47
SY NGNEKQEILFL+IWTNGSLTPKEAL+EASR+LIDLFIPFL AE+E L EN+++KVT
Sbjct: 189 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLPLENNQYKVT 248
Query: 46 LPLSTCHDLLAK 11
LP T HD LAK
Sbjct: 249 LPFFTFHDRLAK 260
[54][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 197 bits (500), Expect = 4e-49
Identities = 94/129 (72%), Positives = 109/129 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN++H+VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 43 PLSTCHDLL 17
PL H+ L
Sbjct: 249 PLFPFHNRL 257
[55][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 197 bits (500), Expect = 4e-49
Identities = 94/129 (72%), Positives = 109/129 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN++H+VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 43 PLSTCHDLL 17
PL H+ L
Sbjct: 249 PLFPFHNRL 257
[56][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 196 bits (497), Expect = 9e-49
Identities = 97/133 (72%), Positives = 110/133 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TE + LCI LQIERDRGY + T N +DGSY IDAIFMPVRNANHS+HS
Sbjct: 129 IVDATQHIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPVRNANHSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILF++IWTNGSLTPKEALYEASRNLIDLFIPFLHAEE +++ E++ + V L
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHLEDNANGVPL 248
Query: 43 PLSTCHDLLAKRN 5
L T HD A N
Sbjct: 249 ALFTFHDEFAITN 261
[57][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 195 bits (495), Expect = 2e-48
Identities = 96/128 (75%), Positives = 107/128 (83%), Gaps = 1/128 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEP+ CIGLQIE +RGYR+ T N Q GSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENHEHKVT 47
Y NGNE QEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N +N ++ VT
Sbjct: 189 YGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLKDNQKNGVT 248
Query: 46 LPLSTCHD 23
LP T HD
Sbjct: 249 LPFFTFHD 256
[58][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 194 bits (494), Expect = 2e-48
Identities = 94/127 (74%), Positives = 107/127 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEP+ LCI L+IER RGY + T N+QDGSY IDA+ MPVRNANHSIHS
Sbjct: 129 IVDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ +N E++ + T+
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINIEDNLKRATV 248
Query: 43 PLSTCHD 23
P T HD
Sbjct: 249 PFFTFHD 255
[59][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 194 bits (494), Expect = 2e-48
Identities = 93/129 (72%), Positives = 108/129 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA + EPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN++H+VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 43 PLSTCHDLL 17
PL H+ L
Sbjct: 249 PLFPFHNRL 257
[60][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 194 bits (493), Expect = 3e-48
Identities = 94/120 (78%), Positives = 105/120 (87%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQH+A++TEPI LCIGLQIER+RGY I T NF DGSY IDA+FMPVRNANHSIH
Sbjct: 131 IVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHC 190
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y N NEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFI FLHA+EE L+ EN++H VTL
Sbjct: 191 YGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHLENNQHDVTL 250
[61][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 194 bits (492), Expect = 3e-48
Identities = 93/129 (72%), Positives = 108/129 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN++H+VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 43 PLSTCHDLL 17
PL H+ L
Sbjct: 249 PLFPFHNRL 257
[62][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 194 bits (492), Expect = 3e-48
Identities = 94/129 (72%), Positives = 108/129 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA VTE I LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHSIHS
Sbjct: 129 IVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGN KQEILFL+IWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE + EN++H+VTL
Sbjct: 189 YGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHLENNQHQVTL 248
Query: 43 PLSTCHDLL 17
PL H+ L
Sbjct: 249 PLFPFHNRL 257
[63][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 193 bits (491), Expect = 4e-48
Identities = 97/131 (74%), Positives = 111/131 (84%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+ +H ++L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTISL 246
Query: 43 PLSTCHDLLAK 11
T +D +AK
Sbjct: 247 SPFTVYDKVAK 257
[64][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 193 bits (490), Expect = 6e-48
Identities = 96/131 (73%), Positives = 111/131 (84%), Gaps = 2/131 (1%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI LCI LQIERDRGYR+ N+QDGSY IDA+ MPVRNANHSIHS
Sbjct: 129 IVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE--KLNFENHEHKV 50
Y +GNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ LN E+++++
Sbjct: 189 YGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNRF 248
Query: 49 TLPLSTCHDLL 17
T+ T HD L
Sbjct: 249 TVSPFTLHDRL 259
[65][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 192 bits (489), Expect = 8e-48
Identities = 92/129 (71%), Positives = 108/129 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE + EN++H+VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYLENNQHQVTL 248
Query: 43 PLSTCHDLL 17
P H+ L
Sbjct: 249 PFFPFHNRL 257
[66][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 192 bits (489), Expect = 8e-48
Identities = 92/127 (72%), Positives = 106/127 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI LCIGL+IER+RGY + N +D SY IDA+FMPV+NANHSIHS
Sbjct: 129 IVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN++H+VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 43 PLSTCHD 23
P H+
Sbjct: 249 PFFPFHN 255
[67][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 192 bits (489), Expect = 8e-48
Identities = 94/131 (71%), Positives = 107/131 (81%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +TEPI LCIGLQIER+RGY + F+DGSY IDA+FMPV+NANHSIHS
Sbjct: 129 IMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNE QEILFL+IWTNG+LTPKEAL+EASRNLI+LFIPFLH EEE EN+E KVTL
Sbjct: 189 YGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNEDKVTL 248
Query: 43 PLSTCHDLLAK 11
PL H+ L K
Sbjct: 249 PLFPFHNRLVK 259
[68][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 192 bits (488), Expect = 1e-47
Identities = 92/129 (71%), Positives = 107/129 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN++H+VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 43 PLSTCHDLL 17
P H+ L
Sbjct: 249 PFFPFHNRL 257
[69][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 192 bits (487), Expect = 1e-47
Identities = 97/132 (73%), Positives = 109/132 (82%), Gaps = 2/132 (1%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNI--DAIFMPVRNANHSI 230
+VD TQHIA++TEPI LCIGLQIERDRGYR+ T N QDGSY I +A+ MPVRNANHSI
Sbjct: 129 MVDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSMPVRNANHSI 188
Query: 229 HSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKV 50
HSY NGNEKQEILFL+IWTNGSLTPKEAL+EAS NLIDLFIPFLH EEE +N E+ ++
Sbjct: 189 HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDINLEDSLNRG 248
Query: 49 TLPLSTCHDLLA 14
TLP T D LA
Sbjct: 249 TLPFFTFQDKLA 260
[70][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 191 bits (486), Expect = 2e-47
Identities = 98/134 (73%), Positives = 111/134 (82%), Gaps = 3/134 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTN-FQDGSYNIDAIFMPVRNANHSIH 227
+VD TQHIA++TEPI+L IGLQIER RGY I T N FQDGSY IDA+FMP+RNANHSIH
Sbjct: 129 VVDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRNANHSIH 188
Query: 226 SYVNGN--EKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHK 53
SY NGN +KQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ +++H
Sbjct: 189 SYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLADNQHM 248
Query: 52 VTLPLSTCHDLLAK 11
V LP T HD L K
Sbjct: 249 VPLPPFTFHDNLDK 262
[71][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 191 bits (485), Expect = 2e-47
Identities = 94/131 (71%), Positives = 107/131 (81%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA + EPI LCI L+IER+RGY I T NFQDGSY IDA+FMP+RNAN+SIHS
Sbjct: 129 IVDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPIRNANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ + EN++H V L
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHLENNQHTVPL 248
Query: 43 PLSTCHDLLAK 11
HD L K
Sbjct: 249 APFFFHDKLDK 259
[72][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 191 bits (484), Expect = 3e-47
Identities = 97/131 (74%), Positives = 108/131 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA + EPI LCIGLQIER+RGY +GSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIARLMEPIDLCIGLQIERNRGY---------NGSYPIDAVFMPVRNANHSIHS 179
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NG+E+QEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E ++HK TL
Sbjct: 180 YGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKGTL 239
Query: 43 PLSTCHDLLAK 11
P T HD LAK
Sbjct: 240 PPLTFHDRLAK 250
[73][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 191 bits (484), Expect = 3e-47
Identities = 91/129 (70%), Positives = 106/129 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILFL+IWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE EN++H+VTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 248
Query: 43 PLSTCHDLL 17
P H+ L
Sbjct: 249 PFFPFHNRL 257
[74][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 190 bits (483), Expect = 4e-47
Identities = 91/121 (75%), Positives = 104/121 (85%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI LCI LQI+RDRGYR+ + + DGSY ID + MPVRNANHSIHS
Sbjct: 129 IVDTTQHIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGNEKQEILF++IWTNGSLTPKEALYEASRNLIDL IPFLHAEEE +NF+ +E++ L
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNFKENENRWNL 248
Query: 43 P 41
P
Sbjct: 249 P 249
[75][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 190 bits (483), Expect = 4e-47
Identities = 92/129 (71%), Positives = 106/129 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +TE I LCIGL+IER+RGY + L F+D SY IDA+FMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGN KQEILFL+IWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN++H VTL
Sbjct: 189 YGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHHVTL 248
Query: 43 PLSTCHDLL 17
PL H+ L
Sbjct: 249 PLFPFHNRL 257
[76][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 189 bits (479), Expect = 1e-46
Identities = 88/116 (75%), Positives = 103/116 (88%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++TEPI+LCIGLQIER+RGY I T NFQDGSY IDA+FMPVRN NHSI+S
Sbjct: 129 IIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPVRNVNHSIYS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEH 56
Y GN+K EILFL+IWTNGSLTPKEAL+EA+RNLIDLFIPFLH EEE L+ E+++H
Sbjct: 189 YGTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDLEDNQH 244
[77][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 188 bits (477), Expect = 2e-46
Identities = 94/131 (71%), Positives = 107/131 (81%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSIHS
Sbjct: 129 ILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGN +EILFL+IWTNGSLTPKEALYEASRNLIDL IPFLH +EE LN E ++H V L
Sbjct: 189 YENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNLEGNQHMVPL 246
Query: 43 PLSTCHDLLAK 11
P T +D LAK
Sbjct: 247 PPFTFYDKLAK 257
[78][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 187 bits (474), Expect = 4e-46
Identities = 93/131 (70%), Positives = 107/131 (81%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGN +EILFL+IWTNGSLTPKEAL+EASRNLIDL IPFLH +EE LN E+++H + L
Sbjct: 189 YENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHMIPL 246
Query: 43 PLSTCHDLLAK 11
P T +D LAK
Sbjct: 247 PPFTFYDKLAK 257
[79][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 187 bits (474), Expect = 4e-46
Identities = 94/131 (71%), Positives = 108/131 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGN +EILFL+IWTNGSLTPKEAL+EASRNLIDL IPFLH +EE LN E+++H V L
Sbjct: 189 YENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHIVPL 246
Query: 43 PLSTCHDLLAK 11
P T +D LAK
Sbjct: 247 PPFTFYDKLAK 257
[80][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 187 bits (474), Expect = 4e-46
Identities = 93/127 (73%), Positives = 103/127 (81%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI LCIGLQIER+RGY + N QDGSY IDA+FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y +GNEK EILFL+IWTNGSLTPKEAL+EA RNLIDLFIPFLH EEE E++ H V L
Sbjct: 189 YGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLEDNHHTVPL 248
Query: 43 PLSTCHD 23
T HD
Sbjct: 249 SPLTFHD 255
[81][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 185 bits (470), Expect = 1e-45
Identities = 94/131 (71%), Positives = 108/131 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV+NANHSIHS
Sbjct: 129 IVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L E+ +H + L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADHTIPL 246
Query: 43 PLSTCHDLLAK 11
T + +AK
Sbjct: 247 SPFTVYYKVAK 257
[82][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 185 bits (470), Expect = 1e-45
Identities = 94/131 (71%), Positives = 108/131 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV+NANHSIHS
Sbjct: 129 IVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L E+ +H + L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADHTIPL 246
Query: 43 PLSTCHDLLAK 11
T + +AK
Sbjct: 247 SPFTVYYKVAK 257
[83][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 185 bits (469), Expect = 2e-45
Identities = 93/131 (70%), Positives = 108/131 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGN +EILFL+IWTNGSLTPKEAL+EASRNLIDL IPFLH +EE L+ E+++H V L
Sbjct: 189 YENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSLEDNQHIVPL 246
Query: 43 PLSTCHDLLAK 11
P T +D LAK
Sbjct: 247 PPFTFYDKLAK 257
[84][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 184 bits (467), Expect = 3e-45
Identities = 92/124 (74%), Positives = 102/124 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIAN+TEPI LCI LQI+RDRGY N QDGSY IDA+ MPVRN N+SI+S
Sbjct: 129 IVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVRNVNYSIYS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
N NEK EILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE NFE ++++ TL
Sbjct: 189 CGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNFEENKNRFTL 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLLT 252
[85][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 183 bits (465), Expect = 5e-45
Identities = 91/131 (69%), Positives = 108/131 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
+VD TQHIA + EPI LCIGL+IER+RGY + T NF+DGSY IDA+FMPV+NANHSIHS
Sbjct: 129 VVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L+ E+ + + L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHLEDADRTIPL 246
Query: 43 PLSTCHDLLAK 11
T +D +AK
Sbjct: 247 SPFTVYDKVAK 257
[86][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 182 bits (462), Expect = 1e-44
Identities = 91/129 (70%), Positives = 104/129 (80%), Gaps = 2/129 (1%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEP+ LCI L+IER RGY T N+QDGSY IDA+ MPVRNANHSIHS
Sbjct: 129 IVDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL--NFENHEHKV 50
Y NGNEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ + N E++ +
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINRNMEDNLKRA 248
Query: 49 TLPLSTCHD 23
++P D
Sbjct: 249 SVPFFAFDD 257
[87][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 182 bits (462), Expect = 1e-44
Identities = 93/131 (70%), Positives = 107/131 (81%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI IGL+IER+ GY I T NF+DGSY IDA+FMPVRNANHSI+S
Sbjct: 129 IVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPVRNANHSINS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+ +H + L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTIPL 246
Query: 43 PLSTCHDLLAK 11
T +D +AK
Sbjct: 247 SPFTVYDKVAK 257
[88][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 177 bits (450), Expect = 3e-43
Identities = 87/124 (70%), Positives = 101/124 (81%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ + N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[89][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 177 bits (449), Expect = 3e-43
Identities = 89/133 (66%), Positives = 103/133 (77%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD +Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 134 IVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 193
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 194 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 253
Query: 43 PLSTCHDLLAKRN 5
PL T L N
Sbjct: 254 PLFTFQKRLTNLN 266
[90][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 177 bits (449), Expect = 3e-43
Identities = 89/133 (66%), Positives = 103/133 (77%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD +Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLSTCHDLLAKRN 5
PL T L N
Sbjct: 249 PLFTFQKRLTNLN 261
[91][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 176 bits (447), Expect = 6e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[92][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 176 bits (447), Expect = 6e-43
Identities = 88/132 (66%), Positives = 101/132 (76%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
+VD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 VVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGFEENKNRFTP 248
Query: 43 PLSTCHDLLAKR 8
PL T L R
Sbjct: 249 PLFTFQKRLTNR 260
[93][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 176 bits (447), Expect = 6e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[94][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[95][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 176 bits (446), Expect = 7e-43
Identities = 90/129 (69%), Positives = 101/129 (78%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I D TQHIA +TEPI CIGL+IER RGY I + FQD SY IDA+FMPVRN NHSIHS
Sbjct: 114 IGDNTQHIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNVNHSIHS 173
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L EN++ V+
Sbjct: 174 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLENNQDTVSF 231
Query: 43 PLSTCHDLL 17
+ H+ L
Sbjct: 232 SPFSFHEKL 240
[96][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[97][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[98][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[99][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[100][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[101][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[102][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[103][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[104][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[105][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[106][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[107][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 176 bits (446), Expect = 7e-43
Identities = 90/130 (69%), Positives = 103/130 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI CIGL+IER+RGYR T T QD SY IDA+ MPVRNAN+SI
Sbjct: 129 IVDTTQHIASITEPINFCIGLEIERNRGYR--TRTTNQDASYPIDAVSMPVRNANYSIQC 186
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y N NEKQEILFL+IWTNGSLTPKEALYEASRNLIDLFIPFLHAEE L+ ++ ++ T
Sbjct: 187 YGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHLDDDQNIFTA 246
Query: 43 PLSTCHDLLA 14
P H+ LA
Sbjct: 247 PFFPFHEGLA 256
[108][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[109][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[110][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[111][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 176 bits (446), Expect = 7e-43
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[112][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 176 bits (445), Expect = 1e-42
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[113][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 176 bits (445), Expect = 1e-42
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNLNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[114][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 176 bits (445), Expect = 1e-42
Identities = 87/124 (70%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[115][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 175 bits (443), Expect = 2e-42
Identities = 86/124 (69%), Positives = 100/124 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI L+I+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[116][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 174 bits (442), Expect = 2e-42
Identities = 86/124 (69%), Positives = 99/124 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQ IAN+ EPI CI LQI+RDRGY N QDGSY IDA+FMPVRN N+SI S
Sbjct: 129 IVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE +++++T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLLT 252
[117][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 174 bits (442), Expect = 2e-42
Identities = 86/123 (69%), Positives = 99/123 (80%)
Frame = -2
Query: 400 VDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSY 221
VD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSC 189
Query: 220 VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 41
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T P
Sbjct: 190 GNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPP 249
Query: 40 LST 32
L T
Sbjct: 250 LFT 252
[118][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 174 bits (441), Expect = 3e-42
Identities = 85/124 (68%), Positives = 99/124 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQ IAN+ EP+ CI LQI+RDRGY N QDGSY IDA+FMPVRN N+SI S
Sbjct: 129 IVDTTQPIANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE +++++T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLLT 252
[119][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 174 bits (440), Expect = 4e-42
Identities = 86/124 (69%), Positives = 99/124 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+ EPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[120][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 174 bits (440), Expect = 4e-42
Identities = 87/124 (70%), Positives = 99/124 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[121][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 87/124 (70%), Positives = 98/124 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY N QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLLT 252
[122][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 85/121 (70%), Positives = 98/121 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 P 41
P
Sbjct: 249 P 249
[123][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 85/121 (70%), Positives = 98/121 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 P 41
P
Sbjct: 249 P 249
[124][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 172 bits (437), Expect = 8e-42
Identities = 86/124 (69%), Positives = 99/124 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ M VRN N+SI S
Sbjct: 129 IVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLLT 252
[125][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 172 bits (437), Expect = 8e-42
Identities = 86/124 (69%), Positives = 99/124 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NG EK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[126][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 172 bits (437), Expect = 8e-42
Identities = 85/124 (68%), Positives = 98/124 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQ IAN+ EP+ CI LQI+RDR Y N QDGSY IDA+FMPVRN N+SI S
Sbjct: 129 IVDTTQPIANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE +FE +++++T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSFEENKNRLTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLLT 252
[127][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 172 bits (435), Expect = 1e-41
Identities = 85/124 (68%), Positives = 97/124 (78%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+ EPI CI LQI+RDRGY N QDGSY IDA+FMPVRN N+SI S
Sbjct: 129 IVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE ++++T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEESKNRLTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLLT 252
[128][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 171 bits (434), Expect = 2e-41
Identities = 86/124 (69%), Positives = 97/124 (78%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY N QDGSY IDA+ MPVRN N+SI
Sbjct: 129 IVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFY 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLLT 252
[129][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 84/131 (64%), Positives = 106/131 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI LCIGL+IER+RGY I FQ+ +Y++DA+FMPV N NHSI+S
Sbjct: 129 IVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPVLNVNHSIYS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEK+EILFL+IWTNGSLTPKEAL+EA++NL+DLFIPFL EEE LN E+ EH++
Sbjct: 189 Y--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNLEDAEHQIPF 246
Query: 43 PLSTCHDLLAK 11
T +D ++K
Sbjct: 247 SPFTFYDKVSK 257
[130][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 85/124 (68%), Positives = 98/124 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEPI CI LQI+RDRGY+ N+QDGSY I + MPVRN N+SI S
Sbjct: 129 IVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNVNYSIFS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGNEK EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248
Query: 43 PLST 32
PL T
Sbjct: 249 PLFT 252
[131][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 162 bits (409), Expect = 1e-38
Identities = 85/130 (65%), Positives = 99/130 (76%), Gaps = 5/130 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGY--RINTLTNFQDG-SYNIDAIFMPVRNANHS 233
IVD TQHI +TEPI CIGLQI+R+RGY +I TNF D Y IDA+F+PV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVFLPVKNVNHS 188
Query: 232 IHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN--HE 59
IHSY NG+ E+LFL+IWTNGSLTPKEAL EASR LI+LFIPFLHAEEE +FEN +E
Sbjct: 189 IHSYENGSH--EMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFHFENNQNE 246
Query: 58 HKVTLPLSTC 29
H LP+ C
Sbjct: 247 HTDELPIDLC 256
[132][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 161 bits (408), Expect = 2e-38
Identities = 85/124 (68%), Positives = 97/124 (78%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI IGL+IER+RGY +F DG Y IDA+FMPV+NANHSIHS
Sbjct: 129 IVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNGSLTPKEAL+EA+R LID FIPF H EEE L + EH T+
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYLADAEH--TI 244
Query: 43 PLST 32
PLS+
Sbjct: 245 PLSS 248
[133][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 160 bits (405), Expect = 4e-38
Identities = 80/122 (65%), Positives = 93/122 (76%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP+ I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI S
Sbjct: 109 IVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNVNYSIFS 168
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN K EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228
Query: 43 PL 38
PL
Sbjct: 229 PL 230
[134][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 160 bits (404), Expect = 5e-38
Identities = 77/121 (63%), Positives = 98/121 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++T+ I I L IE+DRGYRI + N+QDG + IDA+FMPVRNAN+SIHS
Sbjct: 129 IIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVRNANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y NGN+ QEILFL+IWTNGSL P+EALY ASRNLIDLFIPFL AEE+ ++ ++++ +
Sbjct: 189 YGNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDGMDNQNGSNM 248
Query: 43 P 41
P
Sbjct: 249 P 249
[135][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 159 bits (403), Expect = 7e-38
Identities = 80/122 (65%), Positives = 92/122 (75%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI S
Sbjct: 109 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFS 168
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN K EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENQNRFTS 228
Query: 43 PL 38
PL
Sbjct: 229 PL 230
[136][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 159 bits (402), Expect = 9e-38
Identities = 80/122 (65%), Positives = 92/122 (75%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI S
Sbjct: 109 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFS 168
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN K EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228
Query: 43 PL 38
PL
Sbjct: 229 PL 230
[137][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/129 (61%), Positives = 99/129 (76%), Gaps = 1/129 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE QE+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDL 20
LP H L
Sbjct: 249 LPFPLSHVL 257
[138][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 159 bits (401), Expect = 1e-37
Identities = 81/121 (66%), Positives = 94/121 (77%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI IGL+IER+RGY +F DGSY IDA+FMPV+NANHSIHS
Sbjct: 129 IVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNGSLTPKEAL+E++R LID FIPF EEE L + +H + L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIXL 246
Query: 43 P 41
P
Sbjct: 247 P 247
[139][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 159 bits (401), Expect = 1e-37
Identities = 80/133 (60%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE QE+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDLLAKR 8
LP H L R
Sbjct: 249 LPFPLSHVLTDTR 261
[140][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 159 bits (401), Expect = 1e-37
Identities = 81/121 (66%), Positives = 94/121 (77%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA +TEPI IGL+IER+RGY +F DGSY IDA+FMPV+NANHSIHS
Sbjct: 129 IVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y GNEKQEILFL+IWTNGSLTPKEAL+E++R LID FIPF EEE L + +H + L
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIPL 246
Query: 43 P 41
P
Sbjct: 247 P 247
[141][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 158 bits (400), Expect = 2e-37
Identities = 80/122 (65%), Positives = 92/122 (75%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI S
Sbjct: 109 IVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFS 168
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN K EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228
Query: 43 PL 38
PL
Sbjct: 229 PL 230
[142][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 158 bits (400), Expect = 2e-37
Identities = 79/129 (61%), Positives = 99/129 (76%), Gaps = 1/129 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE QE+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDL 20
LP H L
Sbjct: 249 LPFPLSHVL 257
[143][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 158 bits (400), Expect = 2e-37
Identities = 79/129 (61%), Positives = 99/129 (76%), Gaps = 1/129 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE QE+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDL 20
LP H L
Sbjct: 249 LPFPLSHVL 257
[144][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 158 bits (400), Expect = 2e-37
Identities = 79/129 (61%), Positives = 99/129 (76%), Gaps = 1/129 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE QE+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDL 20
LP H L
Sbjct: 249 LPFPLSHVL 257
[145][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 158 bits (400), Expect = 2e-37
Identities = 79/129 (61%), Positives = 99/129 (76%), Gaps = 1/129 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE QE+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDL 20
LP H L
Sbjct: 249 LPFPLSHVL 257
[146][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 158 bits (399), Expect = 2e-37
Identities = 79/122 (64%), Positives = 92/122 (75%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI +
Sbjct: 217 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 276
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN K EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 277 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 336
Query: 43 PL 38
PL
Sbjct: 337 PL 338
[147][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 158 bits (399), Expect = 2e-37
Identities = 79/122 (64%), Positives = 92/122 (75%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI +
Sbjct: 129 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN K EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 189 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 248
Query: 43 PL 38
PL
Sbjct: 249 PL 250
[148][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 158 bits (399), Expect = 2e-37
Identities = 79/122 (64%), Positives = 92/122 (75%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI +
Sbjct: 238 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 297
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN K EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 298 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 357
Query: 43 PL 38
PL
Sbjct: 358 PL 359
[149][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 158 bits (399), Expect = 2e-37
Identities = 79/122 (64%), Positives = 92/122 (75%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI +
Sbjct: 109 IVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 168
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN K EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228
Query: 43 PL 38
PL
Sbjct: 229 PL 230
[150][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 158 bits (399), Expect = 2e-37
Identities = 79/122 (64%), Positives = 92/122 (75%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI +
Sbjct: 129 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN K EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 189 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 248
Query: 43 PL 38
PL
Sbjct: 249 PL 250
[151][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 157 bits (397), Expect = 4e-37
Identities = 78/126 (61%), Positives = 99/126 (78%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK---LNFENHEHK 53
Y +GNE QE+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ +N + +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNM 248
Query: 52 VTLPLS 35
+ PLS
Sbjct: 249 LPFPLS 254
[152][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 157 bits (397), Expect = 4e-37
Identities = 78/126 (61%), Positives = 99/126 (78%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK---LNFENHEHK 53
Y +GNE QE+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ +N + +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNM 248
Query: 52 VTLPLS 35
+ PLS
Sbjct: 249 LPFPLS 254
[153][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 157 bits (397), Expect = 4e-37
Identities = 78/126 (61%), Positives = 99/126 (78%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK---LNFENHEHK 53
Y +GNE QE+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ +N + +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNM 248
Query: 52 VTLPLS 35
+ PLS
Sbjct: 249 LPFPLS 254
[154][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 157 bits (397), Expect = 4e-37
Identities = 82/131 (62%), Positives = 101/131 (77%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD TQHIA++TEPI+L I LQIE++R ++ FQDGSY I A+ MPVR+ N+SIHS
Sbjct: 129 IVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPVRHMNYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
+GN KQEILFL+IWTNGSLTPKEAL+EA RNLIDLFIPFLH EE N EN++ ++
Sbjct: 189 --SGNGKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEG--NLENNQDRIPF 244
Query: 43 PLSTCHDLLAK 11
P T +D L+K
Sbjct: 245 PSFTFYDKLSK 255
[155][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 157 bits (396), Expect = 5e-37
Identities = 78/122 (63%), Positives = 92/122 (75%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI +
Sbjct: 238 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 297
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN + EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 298 CGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 357
Query: 43 PL 38
PL
Sbjct: 358 PL 359
[156][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 157 bits (396), Expect = 5e-37
Identities = 78/129 (60%), Positives = 98/129 (75%), Gaps = 1/129 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+ N+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDVNYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE QE+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDL 20
LP H L
Sbjct: 249 LPFPLSHVL 257
[157][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 156 bits (395), Expect = 6e-37
Identities = 78/129 (60%), Positives = 99/129 (76%), Gaps = 1/129 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDL 20
LP H L
Sbjct: 249 LPFPLSHVL 257
[158][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 156 bits (395), Expect = 6e-37
Identities = 78/129 (60%), Positives = 99/129 (76%), Gaps = 1/129 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDL 20
LP H L
Sbjct: 249 LPFPLSHVL 257
[159][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 156 bits (395), Expect = 6e-37
Identities = 78/129 (60%), Positives = 99/129 (76%), Gaps = 1/129 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDL 20
LP H L
Sbjct: 249 LPFPLSHVL 257
[160][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 156 bits (394), Expect = 8e-37
Identities = 77/126 (61%), Positives = 101/126 (80%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE---HK 53
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N++ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 52 VTLPLS 35
+ PLS
Sbjct: 249 LPFPLS 254
[161][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 156 bits (394), Expect = 8e-37
Identities = 77/126 (61%), Positives = 101/126 (80%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE---HK 53
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N++ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 52 VTLPLS 35
+ PLS
Sbjct: 249 LPFPLS 254
[162][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 156 bits (394), Expect = 8e-37
Identities = 77/126 (61%), Positives = 101/126 (80%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE---HK 53
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N++ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 52 VTLPLS 35
+ PLS
Sbjct: 249 LPFPLS 254
[163][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 156 bits (394), Expect = 8e-37
Identities = 77/126 (61%), Positives = 101/126 (80%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE---HK 53
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N++ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 52 VTLPLS 35
+ PLS
Sbjct: 249 LPFPLS 254
[164][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 156 bits (394), Expect = 8e-37
Identities = 77/126 (61%), Positives = 101/126 (80%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE---HK 53
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N++ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 52 VTLPLS 35
+ PLS
Sbjct: 249 LPFPLS 254
[165][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 156 bits (394), Expect = 8e-37
Identities = 77/126 (61%), Positives = 101/126 (80%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE---HK 53
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N++ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 52 VTLPLS 35
+ PLS
Sbjct: 249 LPFPLS 254
[166][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 155 bits (393), Expect = 1e-36
Identities = 78/122 (63%), Positives = 91/122 (74%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI +
Sbjct: 109 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 168
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
NGN K EILFL+IWTNGSLTP EALYEASRNLIDLF+PFLH EEE F+ ++++ T
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228
Query: 43 PL 38
PL
Sbjct: 229 PL 230
[167][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 155 bits (393), Expect = 1e-36
Identities = 82/130 (63%), Positives = 96/130 (73%), Gaps = 5/130 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGY--RINTLTNFQDG-SYNIDAIFMPVRNANHS 233
IVD TQHI +TEPI C+GLQIER+RGY +I LTN D Y ID++FMPV+N NHS
Sbjct: 129 IVDNTQHIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVFMPVKNVNHS 188
Query: 232 IHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN--HE 59
IHSY NG +LFL+IWTNGSLTPKEAL EASR L +LFIPFLHAEE+ +FEN +E
Sbjct: 189 IHSYENGIHA--MLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQNFHFENNQNE 246
Query: 58 HKVTLPLSTC 29
H LP+ C
Sbjct: 247 HTDELPIDFC 256
[168][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 155 bits (392), Expect = 1e-36
Identities = 74/121 (61%), Positives = 97/121 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNRKGSNM 248
Query: 43 P 41
P
Sbjct: 249 P 249
[169][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 155 bits (391), Expect = 2e-36
Identities = 77/128 (60%), Positives = 98/128 (76%), Gaps = 1/128 (0%)
Frame = -2
Query: 400 VDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSY 221
+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSY 189
Query: 220 VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTL 44
+GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N + L
Sbjct: 190 GSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNML 249
Query: 43 PLSTCHDL 20
P H L
Sbjct: 250 PFPLSHVL 257
[170][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 155 bits (391), Expect = 2e-36
Identities = 77/129 (59%), Positives = 98/129 (75%), Gaps = 1/129 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+ N+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDVNYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVT 47
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248
Query: 46 LPLSTCHDL 20
LP H L
Sbjct: 249 LPFPLSHVL 257
[171][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 155 bits (391), Expect = 2e-36
Identities = 80/120 (66%), Positives = 95/120 (79%), Gaps = 3/120 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGY--RINTLTNFQDG-SYNIDAIFMPVRNANHS 233
IVD TQHI +TEPI+ C+ LQIER+RGY RI T N D Y IDA+FMPV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVFMPVKNVNHS 188
Query: 232 IHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHK 53
IHSY NG+ E+LF +IWTNGSLTPKEAL EASR LI+LFIPFLHAEEEK +FEN++++
Sbjct: 189 IHSYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEKPHFENNQNE 246
[172][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 153 bits (386), Expect = 7e-36
Identities = 73/121 (60%), Positives = 96/121 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDL IPFLH EE+ ++ N+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSNM 248
Query: 43 P 41
P
Sbjct: 249 P 249
[173][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 152 bits (385), Expect = 9e-36
Identities = 72/114 (63%), Positives = 94/114 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENH 62
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLID FIPFLH EE+ ++ N+
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNIDGINN 242
[174][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 152 bits (385), Expect = 9e-36
Identities = 80/126 (63%), Positives = 96/126 (76%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGY--RINTLTNFQDG-SYNIDAIFMPVRNANHS 233
IVD TQHI +TEPI C+GLQIER+RGY +I TN D Y IDA+FMPV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVFMPVKNVNHS 188
Query: 232 IHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHK 53
IH+Y NG+ E+LF +IWTNGSLTPKEAL EASR LI+LFIPFLHAEEE + EN++++
Sbjct: 189 IHAYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENSHLENNQNQ 246
Query: 52 VTLPLS 35
T LS
Sbjct: 247 HTEELS 252
[175][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 152 bits (384), Expect = 1e-35
Identities = 72/114 (63%), Positives = 94/114 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENH 62
Y +GNE +E+LFL+IWTNG LTP+EALYEASRNLIDL IPFLH EE+ ++ N+
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNN 242
[176][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 151 bits (382), Expect = 2e-35
Identities = 80/126 (63%), Positives = 96/126 (76%), Gaps = 3/126 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGY--RINTLTNFQDG-SYNIDAIFMPVRNANHS 233
IVD TQHI +TEPI C+GLQIER+RGY +I L+N D Y IDA+FMPV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVFMPVKNVNHS 188
Query: 232 IHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHK 53
IHSY NG +LFL+IWTNGSLTPKEAL ASR LI+LFIPFLHAEE+ +FEN++++
Sbjct: 189 IHSYENGIHA--MLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQNCHFENNQNE 246
Query: 52 VTLPLS 35
T LS
Sbjct: 247 HTDELS 252
[177][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 150 bits (379), Expect = 4e-35
Identities = 76/111 (68%), Positives = 84/111 (75%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IVD Q IAN+TEP I L+I+RDRGY N QDGSY IDA+ MPVRN N+SI +
Sbjct: 238 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 297
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 71
NGN K EILFL+IWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 298 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 348
[178][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 149 bits (375), Expect = 1e-34
Identities = 73/118 (61%), Positives = 94/118 (79%), Gaps = 1/118 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQ+IA +T+PI L I L+I++D GYRI DG ++IDAIFMP+RNAN+S+HS
Sbjct: 129 IIDTTQYIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPIRNANYSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLNFENHEHK 53
+ N N+ QEILF++IWTNGS+TPKEALYEASR+LIDLFIPFLH E +E +N E+K
Sbjct: 189 FENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKKETINGLKTEYK 246
[179][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 149 bits (375), Expect = 1e-34
Identities = 70/108 (64%), Positives = 90/108 (83%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQ+IA VT+ I L I L+IE+D GYRI DG++ +DA+FMP+RN N+S+HS
Sbjct: 129 IIDTTQYIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPIRNVNYSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 80
+ NGNE QEILFL+IWTNGS+TPKEALYEASR+LI+LFIPFLHAE+++
Sbjct: 189 FENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKE 236
[180][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 148 bits (374), Expect = 2e-34
Identities = 72/121 (59%), Positives = 95/121 (78%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y +GNE +E+LFL+IWTNG LTP+EAL EASR LI+LFIPFLH EE+ ++ N+ +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNIDGMNNRKGSNM 248
Query: 43 P 41
P
Sbjct: 249 P 249
[181][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 148 bits (373), Expect = 2e-34
Identities = 70/108 (64%), Positives = 89/108 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQ+IA +T+PI L I L+IE+D GYRI DG + IDAIFMP+RNAN+S+HS
Sbjct: 129 IIDTTQYIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPIRNANYSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 80
+ N N+ QEILF++IWTNGS+TPKEALYEASR+LIDLFIPFLH E+++
Sbjct: 189 FENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKKE 236
[182][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 147 bits (370), Expect = 5e-34
Identities = 68/115 (59%), Positives = 92/115 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
++D TQ+IA +T+ I L I L+IE+D GYR DG +++DA+F P+RNAN+S+HS
Sbjct: 132 VIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVHS 191
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE 59
+ N NE QEILF++IWTNGS+TPKEALYEASR+LIDLFIPFLHAE+E++ + +E
Sbjct: 192 FENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHDKNE 246
[183][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 146 bits (369), Expect = 6e-34
Identities = 72/110 (65%), Positives = 87/110 (79%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++ E I I QI +DRGYRI + N +DG ++ DA+ MPVRNAN+SIHS
Sbjct: 129 IIDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPVRNANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 74
Y NGNE QEILF +IWTNGSL P EALYEASRNLIDLFIPF+ AEE+ ++
Sbjct: 189 YGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNID 238
[184][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 145 bits (367), Expect = 1e-33
Identities = 69/109 (63%), Positives = 90/109 (82%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQ+IA +T+ I L I L+IE+D GYRI DG + IDAIFMP+RNAN+S+HS
Sbjct: 129 IIDTTQYIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPIRNANYSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 77
+ + N+ QEILF++IWTNGS+TPKEALYEASR+LIDLFIPFLHAE++++
Sbjct: 189 FEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEI 237
[185][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 145 bits (365), Expect = 2e-33
Identities = 67/109 (61%), Positives = 89/109 (81%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
++D TQ+IA +T+ I L I L+IE+D GYR DG +++DA+F P+RNAN+S+HS
Sbjct: 132 VIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVHS 191
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 77
+ N NE QEILF++IWTNGS+TPKEALYEASR+LIDLFIPFLHAE+E++
Sbjct: 192 FENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
[186][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 145 bits (365), Expect = 2e-33
Identities = 79/132 (59%), Positives = 94/132 (71%), Gaps = 7/132 (5%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRIN----TLTNFQDGSYNIDAIFMPVRNANH 236
IVD TQHI +TEPI C+GL+IER RGY I T D +Y IDA+FMPVRN NH
Sbjct: 129 IVDNTQHIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAVFMPVRNVNH 188
Query: 235 SIHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENHE 59
SIHSY G+ E+LFL+IWTNGSLTPKEAL EASR LI+L +PFLHAEEE EN++
Sbjct: 189 SIHSYERGSH--EMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEENFYLVENNQ 246
Query: 58 HKVT--LPLSTC 29
++ T LP+ C
Sbjct: 247 NQDTEELPIDLC 258
[187][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 144 bits (362), Expect = 4e-33
Identities = 67/114 (58%), Positives = 89/114 (78%)
Frame = -2
Query: 400 VDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSY 221
+D +QHIA +T+ I L I ++I++DRGYRI Q G + IDA+FMP+R AN+S+HS+
Sbjct: 130 IDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPIRKANYSVHSF 189
Query: 220 VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE 59
N + QEILF++IWT+GSLTPKEALYEASRNLIDLF+PFLH EEE++ + E
Sbjct: 190 GNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEIISDRDE 243
[188][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 142 bits (358), Expect = 1e-32
Identities = 79/134 (58%), Positives = 92/134 (68%), Gaps = 9/134 (6%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRIN----TLTNFQDGSYNI--DAIFMPVRNA 242
IVD TQHI +TEPI C+ L+IER RGY I T D Y I DA+FMPVRN
Sbjct: 129 IVDNTQHIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPIDAVFMPVRNV 188
Query: 241 NHSIHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK---LNF 71
NHSI+SY G+ +EILFL+IWTNGSLTPKEAL EASR LI+LFIPFLHAEEE L
Sbjct: 189 NHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFYLLEN 246
Query: 70 ENHEHKVTLPLSTC 29
++H LP+ +C
Sbjct: 247 NQNQHTEELPIDSC 260
[189][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 142 bits (357), Expect = 2e-32
Identities = 70/120 (58%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D Q+IA +T+ IQL I L+IE+D GYRI + + IDAIFMP+RNAN+S+HS
Sbjct: 129 IIDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPIRNANYSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLNFENHEHKVT 47
+ N N+ QE+LF++IWTNGS+TPK+ALYEASR+LIDLFIPFLHAE E +N +E+K++
Sbjct: 189 FENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREIINELENEYKLS 248
[190][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 137 bits (344), Expect = 5e-31
Identities = 61/110 (55%), Positives = 86/110 (78%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
++D TQHIA +T+ + I L I +DRGYRI ++DG++ ++A F P+RNAN+S+HS
Sbjct: 129 VIDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNANYSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 74
+ N EKQEILF+++WTNGSLTPKEAL EAS++LI+LFIP LH ++E+ N
Sbjct: 189 FENEKEKQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKEREN 238
[191][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 136 bits (343), Expect = 6e-31
Identities = 64/111 (57%), Positives = 89/111 (80%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+ Q+IA + + I L I L IE+DRGYRI L +Q+G + +DA+FMP+RNAN+S+HS
Sbjct: 129 IMIIAQYIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNANYSVHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 71
+ + + +EILFL+IWT+GSLTPKEALYEASRNLIDLFIP +++E+++ NF
Sbjct: 189 FESEKKIKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNF 239
[192][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 131 bits (330), Expect = 2e-29
Identities = 69/123 (56%), Positives = 83/123 (67%), Gaps = 10/123 (8%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGS----------YNIDAIFMP 254
I+D TQHIAN+ + I L I LQIE+ RGY I N+ + IDA F P
Sbjct: 129 IIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVFPIDAAFAP 188
Query: 253 VRNANHSIHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 74
V+N N+SIHSY + NE QEILFL+IWTNG L PKEALYEASRNLID F+PFL+A+EE +
Sbjct: 189 VQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPFLNAKEENSD 248
Query: 73 FEN 65
N
Sbjct: 249 GTN 251
[193][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 130 bits (327), Expect = 5e-29
Identities = 60/110 (54%), Positives = 85/110 (77%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
++D TQ++A +T I L I L IE+DRGYR+ +++G + IDA+FMP+RNAN+S+HS
Sbjct: 130 VIDNTQYVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRNANYSVHS 189
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 74
+ + + +EIL L+IWTNGSLTP++ALYEASRNLIDLFIP ++ E+ N
Sbjct: 190 FGSREKTKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMNPGGEEKN 239
[194][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 128 bits (322), Expect = 2e-28
Identities = 58/121 (47%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
++D +Q+I +T+PI + I L IE D GYRI +L ++DG + +DA+FMPVRN N+S+H
Sbjct: 129 VIDDSQYIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNVNYSVHP 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFENHEHKVT 47
+ +G E +EILF+++WTNGSLTP EA+ +AS++ IDL PFLH + E + +FE++ +
Sbjct: 189 FGSGKEMREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHEDIPDFESNRDSSS 248
Query: 46 L 44
L
Sbjct: 249 L 249
[195][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 128 bits (321), Expect = 2e-28
Identities = 66/117 (56%), Positives = 86/117 (73%), Gaps = 2/117 (1%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D +QHIA +T I L + L+IERD GYR L Q G + IDA+F P+RNAN+SIHS
Sbjct: 129 IIDASQHIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPIRNANYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK--LNFENHE 59
+ + N+ +EILFL++WTNGSLTP AL EASR+LIDLFI FL+ E+E+ EN+E
Sbjct: 189 FESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIKEIENNE 245
[196][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 126 bits (317), Expect = 7e-28
Identities = 60/123 (48%), Positives = 87/123 (70%), Gaps = 1/123 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D +Q+I +T+PI + I +IE+D GYRI ++DG + +DA+ MPVRN N+S+H
Sbjct: 129 IIDDSQYIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRNVNYSVHP 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFENHEHKVT 47
+ +G E +EI F++IWTNGS TP EAL EAS+NLIDL IPFLH + E + +FE+ +
Sbjct: 189 FGSGREMREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHEDVPHFEDEQDSSD 248
Query: 46 LPL 38
L +
Sbjct: 249 LTI 251
[197][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 125 bits (313), Expect = 2e-27
Identities = 63/119 (52%), Positives = 88/119 (73%), Gaps = 2/119 (1%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
+ D TQHIA +T+ + L I L +E+ GYR+ T DG + ID++FMPVRNAN+S+HS
Sbjct: 241 VTDPTQHIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANYSVHS 300
Query: 223 YVNGNE-KQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFENHEHK 53
Y + + QEILFL+IWTNGS+TP+EAL+EA+R LIDLF+PFLH +++++ N HK
Sbjct: 301 YESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKKEVTNSATKMHK 359
[198][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 124 bits (310), Expect = 4e-27
Identities = 60/138 (43%), Positives = 98/138 (71%), Gaps = 6/138 (4%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
++D QHIA +T+ ++L I L+IE+D GYR + ++DG++ +DA+F P+R+ N+SIH
Sbjct: 132 VIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSVNYSIHC 191
Query: 223 YVNGNEK--QEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN---HE 59
+ + ++ +E+L +IW+NGS+TP+EA+YEASR+ I+LF+PFL AE+EK +F+ HE
Sbjct: 192 FESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKEKEDFKGEDIHE 251
Query: 58 HKVTLP-LSTCHDLLAKR 8
P +S D +AK+
Sbjct: 252 SNALHPSVSIVVDQMAKK 269
[199][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 122 bits (307), Expect = 1e-26
Identities = 63/123 (51%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
Frame = -2
Query: 400 VDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSY 221
+D +Q+IA +T+PI L I L+IE+D GYRI L G + IDA+FMPVRN N+SIH +
Sbjct: 131 IDNSQYIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRNVNYSIHLF 190
Query: 220 VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTL 44
+G QEILF++IWTNGSLTP EAL +AS L+DL FL+ ++ FEN E + L
Sbjct: 191 GSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDSLDL 250
Query: 43 PLS 35
S
Sbjct: 251 TKS 253
[200][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 111 bits (278), Expect = 2e-23
Identities = 61/133 (45%), Positives = 85/133 (63%), Gaps = 2/133 (1%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTN--FQDGSYNIDAIFMPVRNANHSI 230
I+D TQHIA++T+ + + L IER++GY I + ++ ++G + IDA MPVRN N SI
Sbjct: 130 IIDGTQHIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPCMPVRNVNFSI 189
Query: 229 HSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKV 50
HSY + N+ +E+L +IWTNG LTP+EA YEA LIDL +P LH EE+ +
Sbjct: 190 HSYKSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED---MNGAKDFF 246
Query: 49 TLPLSTCHDLLAK 11
LP+ T D L K
Sbjct: 247 ALPILTRMDKLGK 259
[201][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 111 bits (277), Expect = 3e-23
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = -2
Query: 382 IANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEK 203
IA + +PI LCIGLQI+R+ Y + NFQDGSY ID +FM V+NANH+IH Y N NE+
Sbjct: 65 IARLKKPIDLCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNANHNIHFYGNVNER 124
Query: 202 QEILFLDIWTNGSLTPKEALYEAS 131
QEILFL +WTN +LTPKEA +EAS
Sbjct: 125 QEILFLKLWTNKNLTPKEAFHEAS 148
[202][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 105 bits (261), Expect = 2e-21
Identities = 52/122 (42%), Positives = 79/122 (64%), Gaps = 7/122 (5%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D Q IA++TEPI + L IE+ G+R+ T S++IDAIFMP+RN N+SIH
Sbjct: 126 ILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIRNVNYSIHP 185
Query: 223 YVN-GNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL------NFEN 65
G+ K E+L L+IWTNGS+TPKEA ++AS ++++F+ ++ + ++ NFE
Sbjct: 186 VEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFLSLSNSSDNQIQEKSTKNFEE 245
Query: 64 HE 59
E
Sbjct: 246 KE 247
[203][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 102 bits (254), Expect = 1e-20
Identities = 50/120 (41%), Positives = 77/120 (64%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQHIA++T+ I + L+IE+ + Y I + +D + ID + +PV+N N SIHS
Sbjct: 130 IIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIHS 189
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 44
Y + + QE+L +IWTNG LTP+E +YEA +L+DL IP L E+ N + + ++L
Sbjct: 190 YKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQNIKNSQKKPNPLSL 249
[204][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 101 bits (252), Expect = 2e-20
Identities = 44/61 (72%), Positives = 56/61 (91%)
Frame = -2
Query: 262 FMPVRNANHSIHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 83
FMP+RNAN+S+HS+ N N+ QEILF++IWTNGS+TPKEALYEASR+L DLFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
Query: 82 K 80
+
Sbjct: 61 E 61
[205][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 100 bits (250), Expect = 4e-20
Identities = 52/104 (50%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Frame = -2
Query: 400 VDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSY 221
+D TQHIA +T I IGL++ER G+R + +Q GS DA+FMP+R+AN+SIH
Sbjct: 131 MDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFMPIRHANYSIHRL 190
Query: 220 VN--GNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLH 95
+ G +E+L L+ T+GS TP+EA+YEASRNL +LF PF H
Sbjct: 191 GSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[206][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 100 bits (249), Expect = 5e-20
Identities = 50/106 (47%), Positives = 76/106 (71%)
Frame = -2
Query: 406 VIVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIH 227
V+ D +Q+IA VT I + +++E+D GYRI +G + ID++FMPV AN+S+H
Sbjct: 229 VVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVH 288
Query: 226 SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 89
S+ + +EILFL+I+TNGS++P+EAL EA+R+LIDL +P L +E
Sbjct: 289 SFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334
[207][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 100 bits (249), Expect = 5e-20
Identities = 50/106 (47%), Positives = 76/106 (71%)
Frame = -2
Query: 406 VIVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIH 227
V+ D +Q+IA VT I + +++E+D GYRI +G + ID++FMPV AN+S+H
Sbjct: 316 VVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVH 375
Query: 226 SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 89
S+ + +EILFL+I+TNGS++P+EAL EA+R+LIDL +P L +E
Sbjct: 376 SFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421
[208][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 96.7 bits (239), Expect = 7e-19
Identities = 42/109 (38%), Positives = 73/109 (66%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
IV+ Q+IA V +PI + + I++ +GY + + + G + +D +F+P+R+ N+SIHS
Sbjct: 129 IVNPDQYIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSVNYSIHS 188
Query: 223 YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 77
+ + +E L +++WTNGS+ PKEA+ EAS NL++LF P + E ++L
Sbjct: 189 FEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQEYQQL 237
[209][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 96.3 bits (238), Expect = 1e-18
Identities = 49/101 (48%), Positives = 67/101 (66%)
Frame = -2
Query: 385 HIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE 206
HIA +T+PI+ + L I + RGY I + QDG + +DA+F PVRN N SIH N E
Sbjct: 137 HIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNFSIH---NLAE 193
Query: 205 KQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 83
+QE L L+IWTNG++TP +AL + S NLI LF+P E++
Sbjct: 194 QQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDD 234
[210][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 86.3 bits (212), Expect = 1e-15
Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYR-INTLTNFQDGSYNIDAIFMPVRNANHSIH 227
+VD TQ+IA + P + I + +E + +NT+ + G + +DA PVRN N+SIH
Sbjct: 126 VVDNTQYIARLEMPTSIEIHITLENTKTCTSLNTMPTTK-GRFILDAALKPVRNMNYSIH 184
Query: 226 SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 89
S G+ +QE+L L++WTNGSLTP+E + +AS+NL DL P L E
Sbjct: 185 SLGEGDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKVE 230
[211][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 85.5 bits (210), Expect = 2e-15
Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYR---INTLTNFQDGSYNIDAIFMPVRNANHS 233
IVD TQHIA++T+PI L + L+IE++ G I+ +T + + +MPVR+ ++
Sbjct: 133 IVDGTQHIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPTEIFYMPVRSVTYN 192
Query: 232 IHSYVNGNEKQ--EILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE 59
++ Y + + +IL ++WTNG LTPKEALYEA LIDL IP L + L+ E
Sbjct: 193 VYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLL--DVPLLHVEGSG 250
Query: 58 HKVTLPL 38
K ++PL
Sbjct: 251 VKESIPL 257
[212][TOP]
>UniRef100_B9IJB3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IJB3_POPTR
Length = 73
Score = 84.3 bits (207), Expect = 4e-15
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = -2
Query: 367 EPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEI 194
EPI L IGL+IER+ GY + NFQDGSY+IDAIFM VRNANH++HSY NGNEK ++
Sbjct: 11 EPIDLHIGLEIERNHGYCMKPPKNFQDGSYSIDAIFMHVRNANHNVHSYGNGNEKSQL 68
[213][TOP]
>UniRef100_C5Z5P0 Putative uncharacterized protein Sb10g023655 (Fragment) n=1
Tax=Sorghum bicolor RepID=C5Z5P0_SORBI
Length = 66
Score = 83.6 bits (205), Expect = 6e-15
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = -2
Query: 190 FLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPLST 32
FL+IWTNGSLTPKEALYE SRNLIDLF+PF+H EEE NFE +++++T P T
Sbjct: 7 FLEIWTNGSLTPKEALYETSRNLIDLFLPFIHTEEEGTNFEENKNRLTPPFLT 59
[214][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 79.0 bits (193), Expect = 2e-13
Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 4/104 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
+VD Q+IA ++ L + Q+E+ GYR + + + IDA+FMPVR N++
Sbjct: 120 VVDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPVRKVNYT 179
Query: 232 IH-SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ + V G+ +++ L LDIWTNGSLTP+EAL +A+ L+DLF+P
Sbjct: 180 VEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVP 223
[215][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 78.6 bits (192), Expect = 2e-13
Identities = 46/116 (39%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRI--NTLTNFQDGSYNIDAIFMPVRNANHSI 230
I+ TQ++A V E L + +IE+ RGY+I T IDAIFMPVR N+ +
Sbjct: 120 IIHGTQYVATVAENAILEMEFKIEKGRGYKIIDKKQTENSIDFLPIDAIFMPVRKVNYMV 179
Query: 229 HS-YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 65
++ +E +E L L+IW NGS+TP++++ +A+ L++LF PF +K+NFEN
Sbjct: 180 EEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPF-----KKINFEN 230
[216][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 76.6 bits (187), Expect = 8e-13
Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
IVD Q++A + E +L + ++E+ +GYR + + S + ID+IFMPV N+S
Sbjct: 120 IVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPVTKVNYS 179
Query: 232 IHSYVN-GNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPF--LHAEEEKLNFENH 62
+ + + ++ L L+IWTNGS+ PKEAL +A+ L++LF P L+A E NF++
Sbjct: 180 VEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLKDLNALESSSNFDDQ 239
Query: 61 E 59
E
Sbjct: 240 E 240
[217][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 75.9 bits (185), Expect = 1e-12
Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
IVD Q++A + E +L + ++E+ +GYR + + S + ID+IFMPV N+S
Sbjct: 120 IVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPVTKVNYS 179
Query: 232 IHSYVN-GNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPF--LHAEEEKLNFENH 62
+ + + ++ L L+IWTNGS+ PKEAL +A+ L++LF P L+A E NF++
Sbjct: 180 VEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLKDLNALESSGNFDDQ 239
Query: 61 E 59
E
Sbjct: 240 E 240
[218][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 75.5 bits (184), Expect = 2e-12
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN-----IDAIFMPVRNAN 239
IVD +Q++A + E +L + +IE+ +GYR + +D S + ID++FMPV N
Sbjct: 120 IVDPSQYVATLAEGSKLEMEFRIEKGKGYR--AIERGKDDSTSLDFLQIDSVFMPVTKVN 177
Query: 238 HSIHSY-VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 86
+S+ V+G ++ L ++IWTNGS+ PKEAL EA+ ++DLF P E
Sbjct: 178 YSVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[219][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 75.5 bits (184), Expect = 2e-12
Identities = 42/122 (34%), Positives = 71/122 (58%), Gaps = 4/122 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
++D Q+IA + E +L + ++ER GYR+ ++ S + ID++FMPV N++
Sbjct: 120 VIDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKVNYT 179
Query: 232 IHSY-VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEH 56
+ +G ++ L LDIWTNGS+ P+EAL EAS + +LFIP E + +++
Sbjct: 180 VEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNELEAAHSDYQD 239
Query: 55 KV 50
+V
Sbjct: 240 EV 241
[220][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 75.1 bits (183), Expect = 2e-12
Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Frame = -2
Query: 400 VDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSY 221
VD Q IA + QLCI L I + ++ T T + IDA F PV+ AN SIHS
Sbjct: 138 VDPDQSIATLLNETQLCIELFIRQGIAKQL-TRTKKNHQGFFIDANFTPVQKANFSIHSV 196
Query: 220 VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLF----IPFLHAE 89
+ Q++L L+IWTN +LTP EALY+A +L++LF P LH E
Sbjct: 197 GDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[221][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 74.7 bits (182), Expect = 3e-12
Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Frame = -2
Query: 400 VDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHSI 230
VD Q+IA + + +L + +IER +GYR + S + +DA+FMPV N+S+
Sbjct: 121 VDPGQYIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVFMPVTKVNYSV 180
Query: 229 H-SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 89
+ V+G+ +++ L LD+WTNGS++P+EAL +A+ L+DLF P E
Sbjct: 181 EDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[222][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 74.7 bits (182), Expect = 3e-12
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
++D TQ++A + E +L + +IER +GYR + S + ID+IFMPVR N+S
Sbjct: 120 VIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYS 179
Query: 232 IHSY-VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ +G+ ++ L L++WTNGS++P+EAL A+ L+DLF P
Sbjct: 180 VEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[223][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 74.7 bits (182), Expect = 3e-12
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
++D TQ++A + E +L + +IER +GYR + S + ID+IFMPVR N+S
Sbjct: 120 VIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYS 179
Query: 232 IHSY-VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ +G+ ++ L L++WTNGS++P+EAL A+ L+DLF P
Sbjct: 180 VEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[224][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 74.3 bits (181), Expect = 4e-12
Identities = 41/122 (33%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
+VD +Q++A +++ +L + ++E+ +GYR S + ID++FMPV N+S
Sbjct: 120 VVDPSQYVATLSDGSKLEMEFRVEKGKGYRAIERGKDDTTSLDFLQIDSVFMPVTKVNYS 179
Query: 232 IHSY-VNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEH 56
+ V+G ++ L L+IWTNGS+ PKEAL EA+ ++DLF P E + +++
Sbjct: 180 VEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNELEATQSDYQD 239
Query: 55 KV 50
+V
Sbjct: 240 EV 241
[225][TOP]
>UniRef100_Q6J227 RNA polymerase alpha subunit (Fragment) n=1 Tax=Corethron hystrix
RepID=Q6J227_9STRA
Length = 301
Score = 74.3 bits (181), Expect = 4e-12
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 14/128 (10%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGS--YNIDAIFMPVRNANHSI 230
I++ Q+IA ++ + L + + E GYR+ T + S IDA+FMPV+ + +
Sbjct: 123 ILNPNQYIATISRSMILEMEFKFESGIGYRLVNQTKMESSSDFLEIDAVFMPVQKVDFKV 182
Query: 229 HSYVNGNEK-QEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLH-----------AEE 86
+ + N+ E L +DIWTNGS++P+ ALYE+S N+I+LF + E
Sbjct: 183 ENIYDKNKHISENLIIDIWTNGSISPETALYESSNNIIELFNSLIENKFKKEILEPLPEN 242
Query: 85 EKLNFENH 62
++N ENH
Sbjct: 243 TRINSENH 250
[226][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 73.9 bits (180), Expect = 5e-12
Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRI--NTLTNFQDGSYNIDAIFMPVRNANHSI 230
IV+ +IA +T L I +IE GY++ T IDAIFMPV+ + I
Sbjct: 120 IVNPNHYIATITTSNVLEIEFKIESGTGYKLAGQTFCKKSQDYLQIDAIFMPVQKVDFKI 179
Query: 229 HS-YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE 59
+ Y N N+ E LFLDIWTNGS++P+EA+ ASR +I F L E KL E E
Sbjct: 180 ENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLL---ENKLPQETKE 234
[227][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 73.6 bits (179), Expect = 7e-12
Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
++D TQ++A + + +L + +IER +GYR + S + ID++FMPVR N+S
Sbjct: 120 VIDPTQYVATIADGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYS 179
Query: 232 IHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ ++ L L++WTNGS++P+EAL A+ L+DLF P
Sbjct: 180 VEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 222
[228][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 72.4 bits (176), Expect = 1e-11
Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGS----YNIDAIFMPVRNANH 236
+VD TQ++A +TE +L + +IE GY+ DG+ IDA+FMPV N+
Sbjct: 122 VVDPTQYVATLTEGSKLEMEFRIETGTGYK-GVERGKDDGTSLDFLEIDAVFMPVTKVNY 180
Query: 235 SIHSYVNGN--EKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ + G E Q+ L L+IWTNGS PKEAL EA+ ++DLF P
Sbjct: 181 IVED-IRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[229][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 72.4 bits (176), Expect = 1e-11
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+ QH A VT I+ G ++E GYR + +Q GS DA+ MP+RNAN+SIH
Sbjct: 128 IIYPAQHAATVTRKIRSSTGSRVEGGCGYRRRNMVEYQKGSPPPDAVSMPIRNANYSIHR 187
Query: 223 YV--NGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHK 53
+G +E+ + T+GS TP EA YEASR+ +LF P +N H K
Sbjct: 188 LESHSGGIMKEMPPPEARTDGSPTPGEATYEASRDSANLFSP---VPRSSINASTHGKK 243
[230][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 72.0 bits (175), Expect = 2e-11
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 7/129 (5%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
IV+ TQ++A ++ L + +IE+ +GY + + + IDAI+MPVR N+
Sbjct: 120 IVNPTQYVATLSSDATLEMEFRIEQGKGYHAVGKNRDEAAALDFLEIDAIYMPVRRVNYE 179
Query: 232 IH-SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAE---EEKLNFEN 65
+ + V G +++ L LDIWTNG+LTP+E+L +A+ L+DLF P A E + E
Sbjct: 180 VEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDATFNVVEDIELEE 239
Query: 64 HEHKVTLPL 38
+ +P+
Sbjct: 240 EDETNQIPI 248
[231][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 72.0 bits (175), Expect = 2e-11
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHS 224
I+D TQ+IA +T+ I L I +IE+D GYRI DG + +DA+FMP+RNAN+SIHS
Sbjct: 129 IIDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSKKSTDGLFFVDAVFMPIRNANYSIHS 188
Query: 223 YVNGNE 206
+ N N+
Sbjct: 189 FENKNK 194
[232][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 71.6 bits (174), Expect = 3e-11
Identities = 41/104 (39%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
++D TQ++A + E +L + +IE+ +GYR + S + ID+IFMPVR N+S
Sbjct: 120 VIDPTQYVATIAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYS 179
Query: 232 IH-SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ S G ++ L L++WTNGS++P+EAL A+ L+DLF P
Sbjct: 180 VEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[233][TOP]
>UniRef100_Q8DML0 DNA-directed RNA polymerase subunit alpha n=1
Tax=Thermosynechococcus elongatus BP-1 RepID=RPOA_THEEB
Length = 321
Score = 71.6 bits (174), Expect = 3e-11
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 14/136 (10%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSY-----NIDAIFMPVRNAN 239
+V+ +IA + L + +IE+DRGYR ++ +D +DA+FMPVR N
Sbjct: 123 VVNPNHYIATLMPGATLEMEFKIEKDRGYR--SVERVRDDRLALDYLQLDAVFMPVRRVN 180
Query: 238 HSIHSYVNGNEK-----QEILFLDIWTNGSLTPKEALYEASRNLIDLFIPF----LHAEE 86
+++ S + + Q+ L L+IWTNGSLTP++AL +A+ L+DLF P LH E
Sbjct: 181 YTVDSVRSAGAEGDRQLQDYLKLEIWTNGSLTPQDALNQAATILVDLFSPLKEVPLHTSE 240
Query: 85 EKLNFENHEHKVTLPL 38
++H+ +P+
Sbjct: 241 ATAT-DDHDETGQIPI 255
[234][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 70.5 bits (171), Expect = 6e-11
Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
+++ HIA + E L + I R RGYR ++ + + + ID++FMPVR N++
Sbjct: 138 VINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDFLQIDSVFMPVRKVNYT 197
Query: 232 IHSYVNGNE-KQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ + G +++ L L+IWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 198 VEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSP 241
[235][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 70.1 bits (170), Expect = 7e-11
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
+++ +IA ++ L + +IE+ +GYR + S + IDAIFMPVR N++
Sbjct: 119 VINLDHYIATLSADATLEMEFKIEQGKGYRAIERGKDESASLDFLQIDAIFMPVRKVNYT 178
Query: 232 IHSYVNGN-EKQEILFLDIWTNGSLTPKEALYEASRNLIDLF-----IPFLHAEEEKLNF 71
+ +G +++ L L+IWTNGSLTP+EAL + + L+DLF +PF +E
Sbjct: 179 VEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLKDVPFRSSEPSHSTE 238
Query: 70 ENHEHKVTL 44
E+ +++ +
Sbjct: 239 EDETNQIPI 247
[236][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 69.7 bits (169), Expect = 1e-10
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGS----YNIDAIFMPVRNANH 236
+V +IA + E QL + QIER +GYR + +DG+ +IDAIFMPVR N
Sbjct: 120 VVHPRHYIATLAEDGQLEMEFQIERGKGYRAIERGS-EDGAAIDYLSIDAIFMPVRKVNW 178
Query: 235 SIHSYVNG-NEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
++ S + N +Q+ L L+IWT+GSL+P+EAL +A++ L+D P
Sbjct: 179 TVESERSAANVEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRP 223
[237][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 68.9 bits (167), Expect = 2e-10
Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
+V+ TQ IA +TE +L + +IE+ GY ++ + + + IDA+FMPV N+S
Sbjct: 120 VVNPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSEEPAALDFLQIDAVFMPVTKVNYS 179
Query: 232 IHSYVNGNEKQ--EILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ S + G E + + L L+IWTNGS PKEAL +A+ L+DLF P
Sbjct: 180 VES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[238][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 68.6 bits (166), Expect = 2e-10
Identities = 41/104 (39%), Positives = 64/104 (61%), Gaps = 6/104 (5%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGS-----YNIDAIFMPVRNAN 239
+V+ Q+IA ++ L + QIE+ GYR + +D S IDAIFMPVR N
Sbjct: 120 VVNKNQYIATLSPGATLEMECQIEKGTGYR--AVDRHRDDSAALDFLQIDAIFMPVRKVN 177
Query: 238 HSIHSYVNGNE-KQEILFLDIWTNGSLTPKEALYEASRNLIDLF 110
+++ +G +++ L L+IWT+GSLTP+EA+ +A+ L+DLF
Sbjct: 178 YTVEDARDGGSLEKDRLTLEIWTSGSLTPQEAISQAAAILVDLF 221
[239][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 68.2 bits (165), Expect = 3e-10
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
+VD TQ+IA + + +L + +IE+ + YR + + + IDA+FMPV N+S
Sbjct: 120 VVDPTQYIATLADGAKLEMEFRIEKGKSYRAVQRNRDEATALDFLQIDAVFMPVTKVNYS 179
Query: 232 IHS-YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHE 59
+ S + G+ ++ L L+IWTNGS+ P+EAL +A+ ++LF P E + E E
Sbjct: 180 VDSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNPLKDLTLEAIQDELQE 238
[240][TOP]
>UniRef100_B4WHD8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7335 RepID=B4WHD8_9SYNE
Length = 315
Score = 68.2 bits (165), Expect = 3e-10
Identities = 36/104 (34%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
++ ++IA+V +L + +IER +GY+ + + G IDA+FMPVR N+S
Sbjct: 120 LISTDRYIASVAAGHKLEMEFRIERGKGYKAIDRSREETGGVEFMQIDAVFMPVRKVNYS 179
Query: 232 IHSYVNGNE-KQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ ++++ ++ L ++IWTNGSLT ++A+ EA+ L+D+F P
Sbjct: 180 VENFIDPEGFPKDRLVMEIWTNGSLTAQQAMSEAAALLVDMFNP 223
[241][TOP]
>UniRef100_Q110D1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Trichodesmium
erythraeum IMS101 RepID=RPOA_TRIEI
Length = 314
Score = 68.2 bits (165), Expect = 3e-10
Identities = 39/104 (37%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
++D +Q+IA ++ L + +IE+ GY+ T + + IDAIFMPVR N++
Sbjct: 120 VIDRSQYIATLSPGSILEMEFRIEKGTGYKAVDRTRDDVATLDFLQIDAIFMPVRKVNYT 179
Query: 232 IH-SYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
I +++ + +Q+ L +DIWTNGS TP++AL A+ L+ LF P
Sbjct: 180 IEDAHIGSSLEQDRLIMDIWTNGSYTPQDALSNAAGILMSLFEP 223
[242][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 67.8 bits (164), Expect = 4e-10
Identities = 37/104 (35%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
++D TQ++A + E +L + +IE+ +GYR + S + ID++FMPVR N+S
Sbjct: 120 VIDQTQYVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYS 179
Query: 232 IHSYVNGNE-KQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ + ++ L L++WTNGS++P+EAL A+ L++LF P
Sbjct: 180 VEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNP 223
[243][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 67.8 bits (164), Expect = 4e-10
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRI--NTLTNFQDGSYNIDAIFMPVRNANHSI 230
I++ +IA ++ L I + ER GY++ T + + IDAIFMP++ + I
Sbjct: 122 IINPNHYIATISTSNVLEIEFKFERGTGYKLAGQTFCDKSEDFLQIDAIFMPIQKVDFKI 181
Query: 229 HS-YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLF 110
+ Y N N E LFLDIWTNGS++P +A+ AS+ +I+ F
Sbjct: 182 ENVYDNSNSITERLFLDIWTNGSISPDDAISYASKFIIEFF 222
[244][TOP]
>UniRef100_Q6J223 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cylindrotheca
fusiformis RepID=Q6J223_CYLFU
Length = 291
Score = 67.8 bits (164), Expect = 4e-10
Identities = 45/112 (40%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
IV+ ++ ++ L I + E GY++ T F D S N +D IFMPV+ N
Sbjct: 112 IVNPNHYLMTISTSNVLEIEFKFEYGTGYKL-TSQAFLDESDNYLQLDTIFMPVQKVNFK 170
Query: 232 IHS-YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 80
I + Y N N E +FLDIWTNGS++P EAL A++ IDLF L +E K
Sbjct: 171 IENVYDNNNNITEQVFLDIWTNGSISPNEALKSAAQITIDLFELLLKNKETK 222
[245][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 67.4 bits (163), Expect = 5e-10
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
+++ TQ IA +TE +L + +IE+ GY ++ + + + IDA+FMPV N+S
Sbjct: 120 VINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYS 179
Query: 232 IHSYVNGNEKQ--EILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ S + G E + + L L+IWTNGS PKEAL A+ L+DLF P
Sbjct: 180 VES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[246][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 67.4 bits (163), Expect = 5e-10
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
+++ TQ IA +TE +L + +IE+ GY ++ + + + IDA+FMPV N+S
Sbjct: 120 VINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYS 179
Query: 232 IHSYVNGNEKQ--EILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ S + G E + + L L+IWTNGS PKEAL A+ L+DLF P
Sbjct: 180 VES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[247][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 67.4 bits (163), Expect = 5e-10
Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGS----YNIDAIFMPVRNANH 236
+VD Q+IA ++ L + L++E+ GY++ + F S ID+IFMPV+ N+
Sbjct: 124 VVDPCQYIATISGNDYLEMELKVEKSSGYKL--VETFSKKSPLDFLPIDSIFMPVKKVNY 181
Query: 235 SIHSYVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ ++ E L L++WTNGSL+P++++ AS NL+ LF P
Sbjct: 182 YVEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[248][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN---IDAIFMPVRNANHS 233
+++ HIA + E L + I R GYR ++ + + + ID++FMPVR N++
Sbjct: 140 VINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDFLQIDSVFMPVRKVNYA 199
Query: 232 IHSYVNGNE-KQEILFLDIWTNGSLTPKEALYEASRNLIDLFIP 104
+ + G +++ L L+IWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 200 VEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAP 243
[249][TOP]
>UniRef100_Q6J225 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassiosira sp.
Cleve BA153110 RepID=Q6J225_9STRA
Length = 300
Score = 66.2 bits (160), Expect = 1e-09
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNI---DAIFMPVRNANHS 233
I++ +IA ++ L I +IE YR+ T F D N DAIFMP + +
Sbjct: 122 IINPNHYIATLSSSHILEIEFKIESGHDYRLANET-FSDKLSNFIETDAIFMPDQKDDFK 180
Query: 232 IHS-YVNGNEKQEILFLDIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEH 56
+ + Y N N +E +FLD+WTNGS++P++A++ AS +IDL F E K+N E
Sbjct: 181 VENVYDNSNNVKERVFLDVWTNGSISPEQAIFSASNLIIDL---FKSITEHKINQEKESI 237
Query: 55 K 53
K
Sbjct: 238 K 238
[250][TOP]
>UniRef100_C6KIW1 DNA-directed RNA polymerase alpha chain n=1 Tax=Aureoumbra
lagunensis RepID=C6KIW1_9STRA
Length = 303
Score = 65.5 bits (158), Expect = 2e-09
Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Frame = -2
Query: 403 IVDYTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGS--YNIDAIFMPVRNANHSI 230
+++ Q+IA ++E +L + LQIE GYR+ T +D NIDAIF PV+N ++ +
Sbjct: 120 VINTKQYIATISEQTKLKLELQIESGCGYRLVTDELHRDSGTFLNIDAIFTPVKNVSYKV 179
Query: 229 HSYVNGNEKQ-EILFLDIWTNGSLTPKEALYEASRNLIDLF 110
+EK E L L+I T+GSL PK+AL +A+ L ++F
Sbjct: 180 LDLYRFDEKLLEDLVLEITTDGSLNPKDALIQAANILQNMF 220