[UP]
[1][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 134 bits (337), Expect = 4e-30
Identities = 78/131 (59%), Positives = 94/131 (71%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS 338
SENGR P++EEVAEATGLSMKRL+AVLLTPKAPRSL+QKIGI+QNLK +
Sbjct: 437 SENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETA 496
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
E + K +++ +E KQVIRWR+G++DGR K L EIGE++GVSRER RQI
Sbjct: 497 EELLIKQFMREDLEKVLNSLNPRE-KQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQI 555
Query: 157 ESCAFR*TKEK 125
ESCAFR K K
Sbjct: 556 ESCAFRKLKNK 566
Score = 68.2 bits (165), Expect = 3e-10
Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Frame = -2
Query: 426 KLPDLWNRRLGSTRILNPSEVIADPEAETAEEQLIKQFMKKELEKVTGQSQSKRRSRSLD 247
K P ++++G + L PSEVIADP+AETAEE LIKQFM+++LEKV S + R + +
Sbjct: 467 KAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVL-NSLNPREKQVIR 525
Query: 246 GDLVWMMEG*RTCQR*EKC*V*VGRE-IGKLSLVLLGKLKKKKRNKHSQQYLVS 88
+T Q + + V RE I ++ KLK K+R KH QQYLVS
Sbjct: 526 WRYGLEDGRTKTLQEIGEL-MGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578
[2][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 134 bits (337), Expect = 4e-30
Identities = 78/131 (59%), Positives = 94/131 (71%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS 338
SENGR P++EEVAEATGLSMKRL+AVLLTPKAPRSL+QKIGI+QNLK +
Sbjct: 94 SENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETA 153
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
E + K +++ +E KQVIRWR+G++DGR K L EIGE++GVSRER RQI
Sbjct: 154 EELLIKQFMREDLEKVLNSLNPRE-KQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQI 212
Query: 157 ESCAFR*TKEK 125
ESCAFR K K
Sbjct: 213 ESCAFRKLKNK 223
Score = 68.2 bits (165), Expect = 3e-10
Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Frame = -2
Query: 426 KLPDLWNRRLGSTRILNPSEVIADPEAETAEEQLIKQFMKKELEKVTGQSQSKRRSRSLD 247
K P ++++G + L PSEVIADP+AETAEE LIKQFM+++LEKV S + R + +
Sbjct: 124 KAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVL-NSLNPREKQVIR 182
Query: 246 GDLVWMMEG*RTCQR*EKC*V*VGRE-IGKLSLVLLGKLKKKKRNKHSQQYLVS 88
+T Q + + V RE I ++ KLK K+R KH QQYLVS
Sbjct: 183 WRYGLEDGRTKTLQEIGEL-MGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 235
[3][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 132 bits (333), Expect = 1e-29
Identities = 77/132 (58%), Positives = 94/132 (71%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS 338
SENGR PDDEEVAEA GLSMKRLSAVLLTPKAPRSL+QKIG++ +LK +
Sbjct: 428 SENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETA 487
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
++ + K T++ +ET QV+RWRFG++DGRMK L EIGE++GVSRER RQI
Sbjct: 488 EELLMKQFMKQDLEKVLNTLNPRET-QVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQI 546
Query: 157 ESCAFR*TKEKE 122
ES AFR K K+
Sbjct: 547 ESSAFRKLKNKK 558
[4][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 129 bits (324), Expect = 1e-28
Identities = 75/133 (56%), Positives = 94/133 (70%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS 338
SENG+ P++EEVAEATGLSMKRL+AVL+TPKAPRSL+QKIG + NLK +
Sbjct: 434 SENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETA 493
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
+ + K T+S +E KQVIRWRFG++DGRMK L EIGE++GVSRER RQI
Sbjct: 494 EDLLTKQFMRQDLEKVLDTLSSRE-KQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 552
Query: 157 ESCAFR*TKEKEE 119
ES AFR + K++
Sbjct: 553 ESSAFRKLQNKKK 565
[5][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 127 bits (320), Expect = 3e-28
Identities = 78/134 (58%), Positives = 89/134 (66%), Gaps = 3/134 (2%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS 338
SENGR PDD+EVAEATGLSMKRLSAVLLTPKAPRSL+QK+G + +LK
Sbjct: 423 SENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADP----E 478
Query: 337 *RTAH*AIHEEGIGKGNWTV---SIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERN 167
TA + +E + K V QVIRWRFGM+DGRMK L EIGE++GVSRER
Sbjct: 479 AETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERI 538
Query: 166 RQIESCAFR*TKEK 125
RQIE AFR K K
Sbjct: 539 RQIELSAFRKLKNK 552
Score = 60.5 bits (145), Expect = 7e-08
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Frame = -2
Query: 426 KLPDLWNRRLGSTRILNPSEVIADPEAETAEEQLIKQFMKKELEKVTGQSQSKRRSRSLD 247
K P ++++G L SEV ADPEAETAE+ L+K+FMKK+LE+V +S S R ++ +
Sbjct: 453 KAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERVL-ESLSPRENQVIR 511
Query: 246 GDLVWMMEG*RTCQR*EKC*V*VGRE-IGKLSLVLLGKLKKKKRNKHSQQYLVS 88
+T Q + + V RE I ++ L KLK K R K +QYLVS
Sbjct: 512 WRFGMEDGRMKTLQEIGEL-MGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 564
[6][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 127 bits (319), Expect = 4e-28
Identities = 74/131 (56%), Positives = 90/131 (68%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS 338
SENGR PDD+EVAEA GLSMKRLSAVLLTPKAPRSL+QK+G + +LK +
Sbjct: 426 SENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETA 485
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
++ + K ++S +E QV+RWRFGM+DGRMK L EIGE++GVSRER RQI
Sbjct: 486 EDLLMKEFMKKDLAKVLGSLSPRE-NQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQI 544
Query: 157 ESCAFR*TKEK 125
E AFR K K
Sbjct: 545 ELSAFRKLKNK 555
Score = 58.2 bits (139), Expect = 3e-07
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Frame = -2
Query: 426 KLPDLWNRRLGSTRILNPSEVIADPEAETAEEQLIKQFMKKELEKVTGQSQSKRRSRSLD 247
K P ++++G L SEV ADPEAETAE+ L+K+FMKK+L KV G S S R ++ +
Sbjct: 456 KAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLG-SLSPRENQVVR 514
Query: 246 GDLVWMMEG*RTCQR*EKC*V*VGRE-IGKLSLVLLGKLKKKKRNKHSQQYLVS 88
+T Q + + V RE + ++ L KLK K R K +QY+V+
Sbjct: 515 WRFGMEDGRMKTLQEIGEL-MGVSRERVRQIELSAFRKLKNKNRTKQLRQYMVA 567
[7][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 126 bits (317), Expect = 8e-28
Identities = 75/132 (56%), Positives = 90/132 (68%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS 338
SE G+ P +EE+AEATGLSMKRL AVLL+PK PRSL+QKIG++QNLK S
Sbjct: 429 SETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTS 488
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
+ + K ++ +E KQVIRWRFGM+DGRMK L EIGEM+GVSRER RQI
Sbjct: 489 EDILIKEFMRQDLDKVLDSLGTRE-KQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQI 547
Query: 157 ESCAFR*TKEKE 122
ES AFR K K+
Sbjct: 548 ESSAFRKLKNKK 559
Score = 62.8 bits (151), Expect = 1e-08
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Frame = -2
Query: 426 KLPDLWNRRLGSTRILNPSEVIADPEAETAEEQLIKQFMKKELEKV-----TGQSQSKR- 265
K P ++++G + L PSEVIADPEA T+E+ LIK+FM+++L+KV T + Q R
Sbjct: 459 KPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRW 518
Query: 264 RSRSLDGDLVWMMEG*RTCQR*EKC*V*VGRE-IGKLSLVLLGKLKKKKRNKHSQQYLVS 88
R DG + + E + V RE + ++ KLK KKRN H QQYLV+
Sbjct: 519 RFGMEDGRMKTLQEIGEM--------MGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570
Query: 87 LS 82
S
Sbjct: 571 QS 572
[8][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 125 bits (313), Expect = 2e-27
Identities = 74/132 (56%), Positives = 90/132 (68%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS 338
SE G+ P +EE+AEATGLSMKRL AVLL+PK PRSL++KIG++QNLK S
Sbjct: 431 SETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTS 490
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
+ + K ++ +E KQVIRWRFGM+DGRMK L EIGEM+GVSRER RQI
Sbjct: 491 EDILIKEFMRQDLDKVLDSLGTRE-KQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQI 549
Query: 157 ESCAFR*TKEKE 122
ES AFR K K+
Sbjct: 550 ESSAFRKLKNKK 561
Score = 64.3 bits (155), Expect = 5e-09
Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Frame = -2
Query: 426 KLPDLWNRRLGSTRILNPSEVIADPEAETAEEQLIKQFMKKELEKV-----TGQSQSKR- 265
K P +R++G + L PSEVIADPEA T+E+ LIK+FM+++L+KV T + Q R
Sbjct: 461 KPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRW 520
Query: 264 RSRSLDGDLVWMMEG*RTCQR*EKC*V*VGRE-IGKLSLVLLGKLKKKKRNKHSQQYLVS 88
R DG + + E + V RE + ++ KLK KKRN H QQYLV+
Sbjct: 521 RFGMEDGRMKTLQEIGEM--------MGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 572
Query: 87 LS 82
S
Sbjct: 573 QS 574
[9][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 124 bits (312), Expect = 3e-27
Identities = 74/132 (56%), Positives = 89/132 (67%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS 338
SE G+ P +EE+AEATGLSMKRL AVLL+PK PRSL+QKIG++QNLK
Sbjct: 429 SETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTP 488
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
+ + K ++ +E KQVIRWRFGM+DGRMK L EIGEM+GVSRER RQI
Sbjct: 489 EDILIKEFMRQDLDKVLDSLGTRE-KQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQI 547
Query: 157 ESCAFR*TKEKE 122
ES AFR K K+
Sbjct: 548 ESSAFRKLKNKK 559
Score = 62.0 bits (149), Expect = 2e-08
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Frame = -2
Query: 426 KLPDLWNRRLGSTRILNPSEVIADPEAETAEEQLIKQFMKKELEKV-----TGQSQSKR- 265
K P ++++G + L PSEVIADPEA T E+ LIK+FM+++L+KV T + Q R
Sbjct: 459 KPPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRW 518
Query: 264 RSRSLDGDLVWMMEG*RTCQR*EKC*V*VGRE-IGKLSLVLLGKLKKKKRNKHSQQYLVS 88
R DG + + E + V RE + ++ KLK KKRN H QQYLV+
Sbjct: 519 RFGMEDGRMKTLQEIGEM--------MGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570
Query: 87 LS 82
S
Sbjct: 571 QS 572
[10][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 122 bits (307), Expect = 1e-26
Identities = 74/132 (56%), Positives = 89/132 (67%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS 338
SE G+ P +EEVAEATGLSMKRL AVLL+PK PRSL+QKIGI+ NLK S
Sbjct: 429 SETGKQPKNEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSEVIADPEAETS 488
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
+ + K ++S +E KQVIRWRFGM+DGRMK L EIGE +GVSRER RQI
Sbjct: 489 EDILMKQFMRQDLDKVLDSLSTRE-KQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQI 547
Query: 157 ESCAFR*TKEKE 122
++ AFR K K+
Sbjct: 548 DTSAFRKLKNKK 559
Score = 66.2 bits (160), Expect = 1e-09
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 8/121 (6%)
Frame = -2
Query: 426 KLPDLWNRRLGSTRILNPSEVIADPEAETAEEQLIKQFMKKELEKVTGQSQSKRRSRSL- 250
K P ++++G L PSEVIADPEAET+E+ L+KQFM+++L+KV S S R + +
Sbjct: 459 KPPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQFMRQDLDKVL-DSLSTREKQVIR 517
Query: 249 ------DGDLVWMMEG*RTCQR*EKC*V*VGRE-IGKLSLVLLGKLKKKKRNKHSQQYLV 91
DG + + E T + V RE + ++ KLK KKRN H QQYLV
Sbjct: 518 WRFGMEDGRMKTLQEIGET--------MGVSRERVRQIDTSAFRKLKNKKRNSHLQQYLV 569
Query: 90 S 88
+
Sbjct: 570 A 570
[11][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 80.1 bits (196), Expect = 8e-14
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI-DQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG+ ++R+ A + PK SL K+G D + + S T
Sbjct: 400 RLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCTDMTYQEITPD------TSTET 453
Query: 328 AH*AIH----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A +H +E + + +S +E +QVIR+RFGMDDGR++ L +IG ++GVSRER RQ
Sbjct: 454 AEEMLHRWLMKEDVDRALDGLSPRE-RQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQ 512
Query: 160 IESCAFR*TKEKEEKQA 110
IE AFR + +++ Q+
Sbjct: 513 IELVAFRKLRGRKKVQS 529
[12][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 80.1 bits (196), Expect = 8e-14
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI-DQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG+ ++R+ A + PK SL K+G D + + S T
Sbjct: 203 RLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCTDMTYQEITPD------TSTET 256
Query: 328 AH*AIH----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A +H +E + + +S +E +QVIR+RFGMDDGR++ L +IG ++GVSRER RQ
Sbjct: 257 AEEMLHRWLMKEDVDRALDGLSPRE-RQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQ 315
Query: 160 IESCAFR*TKEKEEKQA 110
IE AFR + +++ Q+
Sbjct: 316 IELVAFRKLRGRKKVQS 332
[13][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 80.1 bits (196), Expect = 8e-14
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI-DQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG+ ++R+ A + PK SL K+G D + + S T
Sbjct: 357 RLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCTDMTYQEITPD------TSTET 410
Query: 328 AH*AIH----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A +H +E + + +S +E +QVIR+RFGMDDGR++ L +IG ++GVSRER RQ
Sbjct: 411 AEEMLHRWLMKEDVDRALDGLSPRE-RQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQ 469
Query: 160 IESCAFR*TKEKEEKQA 110
IE AFR + +++ Q+
Sbjct: 470 IELVAFRKLRGRKKVQS 486
[14][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 80.1 bits (196), Expect = 8e-14
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI-DQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG+ ++R+ A + PK SL K+G D + + S T
Sbjct: 400 RLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCTDMTYQEITPD------TSTET 453
Query: 328 AH*AIH----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A +H +E + + +S +E +QVIR+RFGMDDGR++ L +IG ++GVSRER RQ
Sbjct: 454 AEEMLHRWLMKEDVDRALDGLSPRE-RQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQ 512
Query: 160 IESCAFR*TKEKEEKQA 110
IE AFR + +++ Q+
Sbjct: 513 IELVAFRKLRGRKKVQS 529
[15][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 75.5 bits (184), Expect = 2e-12
Identities = 49/134 (36%), Positives = 75/134 (55%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E+ R P EEVAE G+SM RL V + P SL++ +G D + K + ++
Sbjct: 355 EHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTE 414
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ ++ + + T++ +E KQV+R R+G+DDGRMK+L E+GE +SRER RQIE
Sbjct: 415 TIVSKELFKKDLDRVLDTLTARE-KQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIE 473
Query: 154 SCAFR*TKEKEEKQ 113
A R ++ Q
Sbjct: 474 MKAMRKLRQNHRTQ 487
[16][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 75.5 bits (184), Expect = 2e-12
Identities = 49/134 (36%), Positives = 75/134 (55%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E+ R P EEVAE G+SM RL V + P SL++ +G D + K + ++
Sbjct: 452 EHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTE 511
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ ++ + + T++ +E KQV+R R+G+DDGRMK+L E+GE +SRER RQIE
Sbjct: 512 TIVSKELFKKDLDRVLDTLTARE-KQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIE 570
Query: 154 SCAFR*TKEKEEKQ 113
A R ++ Q
Sbjct: 571 MKAMRKLRQNHRTQ 584
[17][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 75.1 bits (183), Expect = 3e-12
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-IDQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG+ +KR+ A + PK SL+ KIG D + ++ S T
Sbjct: 399 RRPTNEEIAVDTGIPIKRVEAAVNLPKYSVSLDSKIGSTDMTYQEVTAD------PSAET 452
Query: 328 AH*AIHEEGIGKGNW----TVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A ++ + K T++ +E KQV+ RFG++DGR++ L EIG ++GVSRER RQ
Sbjct: 453 AEEMLNRMSMKKDVHMALDTLTTRE-KQVVVLRFGLEDGRIRTLQEIGNIMGVSRERIRQ 511
Query: 160 IESCAFR*TKEKEEKQA 110
IES AFR + K++ +A
Sbjct: 512 IESGAFRKLRSKKKVKA 528
[18][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 74.7 bits (182), Expect = 3e-12
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-IDQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG+ +KR+ A + PK SL+ KIG D + ++ + T
Sbjct: 424 RRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIGSTDMTYQEVTAD------PTAET 477
Query: 328 AH*AIH----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A ++ + + K T++ +E +QV+ RFG++DGR++ L EIG +GVSRER RQ
Sbjct: 478 AEEMLNRLSMKRDVHKALDTLTTRE-RQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQ 536
Query: 160 IESCAFR*TKEKEEKQA 110
IES AFR + K+ A
Sbjct: 537 IESAAFRKLRSKKRVNA 553
[19][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 74.7 bits (182), Expect = 3e-12
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-IDQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG+ +KR+ A + PK SL+ KIG D + ++ + T
Sbjct: 424 RRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIGSTDMTYQEVTAD------PTAET 477
Query: 328 AH*AIH----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A ++ + + K T++ +E +QV+ RFG++DGR++ L EIG +GVSRER RQ
Sbjct: 478 AEEMLNRLSMKRDVHKALDTLTTRE-RQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQ 536
Query: 160 IESCAFR*TKEKEEKQA 110
IES AFR + K+ A
Sbjct: 537 IESAAFRKLRSKKRVNA 553
[20][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 74.7 bits (182), Expect = 3e-12
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-IDQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG+ +KR+ A + PK SL+ KIG D + ++ + T
Sbjct: 424 RRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIGSTDMTYQEVTAD------PTAET 477
Query: 328 AH*AIH----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A ++ + + K T++ +E +QV+ RFG++DGR++ L EIG +GVSRER RQ
Sbjct: 478 AEEMLNRLSMKRDVHKALDTLTTRE-RQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQ 536
Query: 160 IESCAFR*TKEKEEKQA 110
IES AFR + K+ A
Sbjct: 537 IESAAFRKLRSKKRVNA 553
[21][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 74.7 bits (182), Expect = 3e-12
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-IDQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG+ +KR+ A + PK SL+ KIG D + ++ + T
Sbjct: 423 RRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIGSTDMTYQEVTAD------PTAET 476
Query: 328 AH*AIH----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A ++ + + K T++ +E +QV+ RFG++DGR++ L EIG +GVSRER RQ
Sbjct: 477 AEEMLNRLSMKRDVHKALDTLTTRE-RQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQ 535
Query: 160 IESCAFR*TKEKEEKQA 110
IES AFR + K+ A
Sbjct: 536 IESAAFRKLRSKKRVNA 552
[22][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
bicolor RepID=C6JRK5_SORBI
Length = 238
Score = 73.2 bits (178), Expect = 1e-11
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-IDQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG+ +KR+ A + PK SL+ KIG D + ++ S T
Sbjct: 98 RRPTNEEIALDTGMPIKRVEAAVNLPKYSVSLDSKIGSTDMTYQEVTAD------PSAET 151
Query: 328 AH*AIH----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A ++ ++ + K T++ +E KQV+ RFG++D R++ L EIG ++GVSRER RQ
Sbjct: 152 AEEMLNRMSMKKDVHKALDTLTTRE-KQVVVLRFGLEDDRIRTLQEIGNIMGVSRERIRQ 210
Query: 160 IESCAFR*TKEKEEKQA 110
IES AFR + K+ +A
Sbjct: 211 IESGAFRKLRSKKRVKA 227
[23][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 69.3 bits (168), Expect = 1e-10
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-IDQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG++++R+ A + PK S K+G D + + S T
Sbjct: 387 RLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCTDVTYQEIMPD------TSAET 440
Query: 328 AH*AIHEEGIGKGNWTV---SIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
A +H + K T KQV+R+RFG++ GR + L +IG+++GVSRER RQI
Sbjct: 441 AEETLHRWLMKKDVNTALDSLSPRKKQVMRYRFGIEGGRARTLHDIGQLMGVSRERIRQI 500
Query: 157 ESCAFR*TKEKEEKQA 110
E AFR + K Q+
Sbjct: 501 ELGAFRKLRSKNRLQS 516
[24][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 69.3 bits (168), Expect = 1e-10
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E+GR +EEVAE GL++++L +V+ + KAP S+E+ IG D + + G +S
Sbjct: 434 EHGREARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDT-TLGELVADTDVDSP 492
Query: 334 RTAH*A-IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
A + + I T++ +E ++V+R RFG+DDGR K L EIG++ V+RER RQI
Sbjct: 493 EDAIVKQLMRQDIEGVLRTLNPRE-REVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQI 551
Query: 157 ESCAFR 140
E+ A R
Sbjct: 552 EAKAMR 557
[25][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 68.6 bits (166), Expect = 2e-10
Identities = 46/125 (36%), Positives = 73/125 (58%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G S N
Sbjct: 300 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDSENPE 358
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 359 LDVAKTLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 417
Query: 154 SCAFR 140
+ A R
Sbjct: 418 AKALR 422
[26][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 68.6 bits (166), Expect = 2e-10
Identities = 45/125 (36%), Positives = 73/125 (58%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE +++++L + + + P SLE IG +++ + G + G
Sbjct: 237 ELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 295
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
++ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 296 DQVSKSLLREDLENVLDTLSARE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 354
Query: 154 SCAFR 140
+ A R
Sbjct: 355 AKALR 359
[27][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 68.6 bits (166), Expect = 2e-10
Identities = 46/125 (36%), Positives = 73/125 (58%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G S N
Sbjct: 287 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDSENPE 345
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 346 LDVAKTLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 404
Query: 154 SCAFR 140
+ A R
Sbjct: 405 AKALR 409
[28][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 68.2 bits (165), Expect = 3e-10
Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI-DQNLKSFGSNC*S*G*NS*RT 329
R P +EE+A TG++++R+ A + PK S K+G D + + S T
Sbjct: 388 RLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCTDVTYQEIMPD------TSAET 441
Query: 328 AH*AIH----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A +H ++ + ++S +E K V+R+RFG++ GR + L +IG+++GVSRER RQ
Sbjct: 442 AEEVLHRWLMKKDVNTALESLSPRE-KLVMRYRFGIEGGRPRTLHDIGQIMGVSRERIRQ 500
Query: 160 IESCAFR*TKEKEEKQA 110
IE AFR + K+ Q+
Sbjct: 501 IELGAFRKLRSKKRVQS 517
[29][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 67.4 bits (163), Expect = 5e-10
Identities = 46/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G S N
Sbjct: 323 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDTENPE 381
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 382 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIE 440
Query: 154 SCAFR 140
+ A R
Sbjct: 441 AKALR 445
[30][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 67.4 bits (163), Expect = 5e-10
Identities = 46/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G S N
Sbjct: 306 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDTENPE 364
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 365 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIE 423
Query: 154 SCAFR 140
+ A R
Sbjct: 424 AKALR 428
[31][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 67.4 bits (163), Expect = 5e-10
Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E+GR P DEEVAE G+S+++L ++ + K P S+++ IG +++ +S G S
Sbjct: 448 EHGRQPRDEEVAELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKD-QSIGEMIADKDVESP 506
Query: 334 RT-AH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
+ ++ + T++ +E ++V+R RFG+DDG+ + L EIG + V+RER RQI
Sbjct: 507 EDDLIRQVLKQDVDGVLCTLNPRE-REVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQI 565
Query: 157 ESCAFR 140
E+ A R
Sbjct: 566 EAKAMR 571
[32][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 67.0 bits (162), Expect = 7e-10
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 258 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 316
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 317 QDVSKTLLREDLEGVLATLSPRE-RDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIE 375
Query: 154 SCAFR 140
+ A R
Sbjct: 376 AKALR 380
[33][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 67.0 bits (162), Expect = 7e-10
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 255 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 313
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 314 QDVSKTLLREDLEGVLATLSPRE-RDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIE 372
Query: 154 SCAFR 140
+ A R
Sbjct: 373 AKALR 377
[34][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 67.0 bits (162), Expect = 7e-10
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 255 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 313
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 314 QDVSKTLLREDLEGVLATLSPRE-RDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIE 372
Query: 154 SCAFR 140
+ A R
Sbjct: 373 AKALR 377
[35][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 67.0 bits (162), Expect = 7e-10
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 256 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 314
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 315 QDVSKTLLREDLEGVLATLSPRE-RDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIE 373
Query: 154 SCAFR 140
+ A R
Sbjct: 374 AKALR 378
[36][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 67.0 bits (162), Expect = 7e-10
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 259 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 317
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 318 QDVSKTLLREDLEGVLATLSPRE-RDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIE 376
Query: 154 SCAFR 140
+ A R
Sbjct: 377 AKALR 381
[37][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 67.0 bits (162), Expect = 7e-10
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 256 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 314
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 315 QDVSKTLLREDLEGVLATLSPRE-RDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIE 373
Query: 154 SCAFR 140
+ A R
Sbjct: 374 AKALR 378
[38][TOP]
>UniRef100_C7H329 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
prausnitzii A2-165 RepID=C7H329_9FIRM
Length = 461
Score = 67.0 bits (162), Expect = 7e-10
Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSF--GSNC*S*G 347
+NG P EE+A+A +S++R+ + + P SLE +G D +L F N + G
Sbjct: 322 QNGHEPTPEELAKAMDMSVERVREIQRMAQEPASLESPVGEEEDSSLGDFVADENAEAPG 381
Query: 346 *NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERN 167
+ A A+ + I + +++ +E K VIR RFG+DDGR + L E+G GV+RER
Sbjct: 382 ----KAADRAMVAQQINQALKSLTPREEK-VIRLRFGLDDGRPRTLEEVGRDFGVTRERV 436
Query: 166 RQIESCAFR 140
RQIE+ A R
Sbjct: 437 RQIEAKAIR 445
[39][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 67.0 bits (162), Expect = 7e-10
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 255 EFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 313
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 314 QDVSKTLLREDLEGVLATLSPRE-RDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIE 372
Query: 154 SCAFR 140
+ A R
Sbjct: 373 AKALR 377
[40][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 67.0 bits (162), Expect = 7e-10
Identities = 45/125 (36%), Positives = 72/125 (57%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G S G
Sbjct: 266 ELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 324
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
++ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 325 DEVSKSLLREDLESVLSTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 383
Query: 154 SCAFR 140
+ A R
Sbjct: 384 AKALR 388
[41][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 66.6 bits (161), Expect = 9e-10
Identities = 44/125 (35%), Positives = 72/125 (57%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A+ +++++L + + + P SLE IG +++ + G S G
Sbjct: 280 EMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 338
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V++ R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 339 DQVSKHLLREDLETVLCTLSPRE-RDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIE 397
Query: 154 SCAFR 140
+ A R
Sbjct: 398 AKALR 402
[42][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 66.6 bits (161), Expect = 9e-10
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 280 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 338
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 339 QDVAKTLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 397
Query: 154 SCAFR 140
+ A R
Sbjct: 398 AKALR 402
[43][TOP]
>UniRef100_B2KBW8 RNA polymerase sigma factor n=1 Tax=Elusimicrobium minutum Pei191
RepID=B2KBW8_ELUMP
Length = 571
Score = 66.6 bits (161), Expect = 9e-10
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQ--NLKSFGSNC*S*G*N 341
E+GR P E+ +++ LSM+++ VL + P SL +G D+ NL+ F + G N
Sbjct: 431 EHGREPSLEDYSKSLRLSMEKVKGVLKIMQDPISLSTPVGEDEDSNLEDFIED--KAGAN 488
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
TA + ++ + + T+S +E K +IR RFG+D G + L E+G+M V+RER RQ
Sbjct: 489 PTVTASDFLRKQEVSEVLNTLSEREAK-IIRLRFGIDSGYPRTLEEVGKMFNVTRERVRQ 547
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 548 IEAKAIR 554
[44][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 66.6 bits (161), Expect = 9e-10
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 280 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 338
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 339 QDVAKTLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 397
Query: 154 SCAFR 140
+ A R
Sbjct: 398 AKALR 402
[45][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 66.2 bits (160), Expect = 1e-09
Identities = 45/125 (36%), Positives = 72/125 (57%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G S G
Sbjct: 251 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 309
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + K ++S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 310 DQVSKNLLREDLEKVLDSLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 368
Query: 154 SCAFR 140
+ A R
Sbjct: 369 AKALR 373
[46][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 66.2 bits (160), Expect = 1e-09
Identities = 45/125 (36%), Positives = 72/125 (57%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G S G
Sbjct: 253 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 311
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + K ++S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 312 DQVSKNLLREDLEKVLDSLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 370
Query: 154 SCAFR 140
+ A R
Sbjct: 371 AKALR 375
[47][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 66.2 bits (160), Expect = 1e-09
Identities = 45/125 (36%), Positives = 72/125 (57%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G S G
Sbjct: 252 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 310
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + K ++S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 311 DQVSKNLLREDLEKVLDSLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 369
Query: 154 SCAFR 140
+ A R
Sbjct: 370 AKALR 374
[48][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 333 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 391
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 392 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 450
Query: 154 SCAFR 140
+ A R
Sbjct: 451 AKALR 455
[49][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 313 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 371
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 372 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 430
Query: 154 SCAFR 140
+ A R
Sbjct: 431 AKALR 435
[50][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 297 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 355
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 356 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 414
Query: 154 SCAFR 140
+ A R
Sbjct: 415 AKALR 419
[51][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 302 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 360
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 361 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 419
Query: 154 SCAFR 140
+ A R
Sbjct: 420 AKALR 424
[52][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 312 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 370
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 371 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 429
Query: 154 SCAFR 140
+ A R
Sbjct: 430 AKALR 434
[53][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 313 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 371
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 372 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 430
Query: 154 SCAFR 140
+ A R
Sbjct: 431 AKALR 435
[54][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 341 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 399
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 400 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 458
Query: 154 SCAFR 140
+ A R
Sbjct: 459 AKALR 463
[55][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 320 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 378
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 379 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 437
Query: 154 SCAFR 140
+ A R
Sbjct: 438 AKALR 442
[56][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G S G
Sbjct: 249 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 307
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 308 DQVSKNLLREDLESVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 366
Query: 154 SCAFR 140
+ A R
Sbjct: 367 AKALR 371
[57][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 365 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 423
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 424 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 482
Query: 154 SCAFR 140
+ A R
Sbjct: 483 AKALR 487
[58][TOP]
>UniRef100_A8S616 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii
M21/2 RepID=A8S616_9FIRM
Length = 457
Score = 65.9 bits (159), Expect = 2e-09
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSF--GSNC*S*G 347
+NG P EE+A+A +S++R+ + + P SLE +G D +L F N + G
Sbjct: 318 QNGHEPTPEELAKAMDMSVERVREIQRMAQEPASLESPVGEEEDSSLGDFVADENAEAPG 377
Query: 346 *NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERN 167
+ A A+ + I +++ +E K VIR RFG+DDGR + L E+G GV+RER
Sbjct: 378 ----KAADRAMVAQQINLALKSLTPREEK-VIRLRFGLDDGRPRTLEEVGRDFGVTRERV 432
Query: 166 RQIESCAFR 140
RQIE+ A R
Sbjct: 433 RQIEAKAIR 441
[59][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 309 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 367
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 368 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 426
Query: 154 SCAFR 140
+ A R
Sbjct: 427 AKALR 431
[60][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 318 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 376
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 377 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 435
Query: 154 SCAFR 140
+ A R
Sbjct: 436 AKALR 440
[61][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 331 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 389
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 390 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 448
Query: 154 SCAFR 140
+ A R
Sbjct: 449 AKALR 453
[62][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G S G
Sbjct: 253 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 311
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 312 DQVSKNLLREDLESVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 370
Query: 154 SCAFR 140
+ A R
Sbjct: 371 AKALR 375
[63][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/125 (36%), Positives = 74/125 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 322 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPE 380
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 381 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 439
Query: 154 SCAFR 140
+ A R
Sbjct: 440 AKALR 444
[64][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 65.5 bits (158), Expect = 2e-09
Identities = 44/125 (35%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G S G
Sbjct: 240 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 298
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V++ R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 299 DQVSKNLLREDLETVLCTLSPRE-RDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIE 357
Query: 154 SCAFR 140
+ A R
Sbjct: 358 AKALR 362
[65][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 65.5 bits (158), Expect = 2e-09
Identities = 44/125 (35%), Positives = 72/125 (57%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G S G
Sbjct: 233 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 291
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
++ E + T+S +E + V++ R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 292 DQVSKSLLREDLETVLDTLSPRE-RDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 350
Query: 154 SCAFR 140
+ A R
Sbjct: 351 AKALR 355
[66][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 65.5 bits (158), Expect = 2e-09
Identities = 44/125 (35%), Positives = 72/125 (57%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A+ +++++L + + + P SLE IG +++ + G + G
Sbjct: 242 ELGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 300
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 301 DQVSKNLLREDLESVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 359
Query: 154 SCAFR 140
+ A R
Sbjct: 360 AKALR 364
[67][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 65.1 bits (157), Expect = 3e-09
Identities = 44/125 (35%), Positives = 72/125 (57%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A + +++++L + + + P SLE IG +++ + G S G
Sbjct: 248 EMGRKPTEEEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 306
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + ++S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 307 DEVSKNLLREDLESVLNSLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 365
Query: 154 SCAFR 140
+ A R
Sbjct: 366 AKALR 370
[68][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 64.7 bits (156), Expect = 4e-09
Identities = 43/125 (34%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G S G
Sbjct: 266 ELGRRPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESEGETPE 324
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T++ +E + V++ R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 325 ERVAKVLLREDLESVLETLTPRE-RDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 383
Query: 154 SCAFR 140
+ A R
Sbjct: 384 AKALR 388
[69][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 64.7 bits (156), Expect = 4e-09
Identities = 43/125 (34%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G S G
Sbjct: 265 ELGRKPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIESDGETPE 323
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T++ +E + V++ R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 324 DRVAKVLLREDLESVLETLTARE-RDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 382
Query: 154 SCAFR 140
+ A R
Sbjct: 383 AKALR 387
[70][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 64.7 bits (156), Expect = 4e-09
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+AE G+S +++ ++ + P SLE IG D +L F + +
Sbjct: 230 ELGREPTPEEIAEKMGISPEKVREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQA-- 287
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A A+ E + + +++ +E K V+R RFG+DDGR + L E+G+ GV+RER RQ
Sbjct: 288 PAEEASYALLREQLNEVLQSLTPREQK-VLRLRFGLDDGRARTLEEVGQKFGVTRERIRQ 346
Query: 160 IESCAFR 140
IE+ R
Sbjct: 347 IEAKTLR 353
[71][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 64.3 bits (155), Expect = 5e-09
Identities = 44/125 (35%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 261 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 319
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 320 DEVAKNLLREDLEGVLSTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIE 378
Query: 154 SCAFR 140
+ A R
Sbjct: 379 AKALR 383
[72][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 64.3 bits (155), Expect = 5e-09
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS* 335
GR P EE+AEA +S++R+ ++ + P SLE IG D +L F + +
Sbjct: 238 GREPSPEEIAEAMEISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPA--PA 295
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A + +E + + T++ +E ++V+R RFG+DDGR + L E+G+ GV+RER RQIE
Sbjct: 296 EAASFMLLKEQLEEVLDTLTERE-ERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIE 354
Query: 154 SCAFR 140
+ A R
Sbjct: 355 AKALR 359
[73][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 64.3 bits (155), Expect = 5e-09
Identities = 44/125 (35%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 261 EMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 319
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 320 DEVAKNLLREDLEGVLSTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIE 378
Query: 154 SCAFR 140
+ A R
Sbjct: 379 AKALR 383
[74][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 63.9 bits (154), Expect = 6e-09
Identities = 44/125 (35%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 262 ELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 320
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 321 DKVAKNLLREDLEAVLNTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIE 379
Query: 154 SCAFR 140
+ A R
Sbjct: 380 AKALR 384
[75][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 63.9 bits (154), Expect = 6e-09
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ G+S ++ ++ + P SLE IG D +L F + +
Sbjct: 231 ELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKA-- 288
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + E + + T++ +E K V+R RFG+DDGR + L E+G++ GV+RER RQ
Sbjct: 289 PVEEASYTLLREQLDEVLKTLTEREQK-VLRLRFGLDDGRARTLEEVGQIFGVTRERIRQ 347
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 348 IEAKALR 354
[76][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 63.9 bits (154), Expect = 6e-09
Identities = 44/123 (35%), Positives = 73/123 (59%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE+ +++++L + + + P SLE IG +++ + G + N
Sbjct: 263 EFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADIENPD 321
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 322 QDVAKNLLREDLEGVLATLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE 380
Query: 154 SCA 146
+ A
Sbjct: 381 AKA 383
[77][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 63.9 bits (154), Expect = 6e-09
Identities = 44/125 (35%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+A +++++L + + + P SLE IG +++ + G + G N
Sbjct: 241 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGENPE 299
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 300 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 358
Query: 154 SCAFR 140
+ A R
Sbjct: 359 AKALR 363
[78][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V565_9FIRM
Length = 382
Score = 63.9 bits (154), Expect = 6e-09
Identities = 44/125 (35%), Positives = 69/125 (55%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P EE+A GLS+ R+ ++ + P SLE IG +++ + +
Sbjct: 242 ELGRDPTPEEIAHRMGLSVARVREIMKISQEPVSLETPIGEEEDTRLSDFIEDEAAPDPA 301
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A + +E I + T++ +E +V+R RFG+ DGR + L E+G+ GV+RER RQIE
Sbjct: 302 DAASMLLLKEQISEVLTTLAPREA-EVLRLRFGLVDGRSRTLEEVGQNFGVTRERIRQIE 360
Query: 154 SCAFR 140
+ A R
Sbjct: 361 AKALR 365
[79][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 63.9 bits (154), Expect = 6e-09
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A +S++R+ ++ + P SLE IG D +L F + +
Sbjct: 229 EKGREPTPEEIAREMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPA-- 286
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + + T++ +E K V+R RFG+DDGR + L E+G+ GV+RER RQ
Sbjct: 287 PAEAASFMLLKEQLEEVLETLTPREEK-VLRLRFGLDDGRARTLEEVGQYFGVTRERIRQ 345
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 346 IEAKALR 352
[80][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 63.9 bits (154), Expect = 6e-09
Identities = 41/125 (32%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE +S+++L +VL + + SLE+ + D + + +
Sbjct: 303 EIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPE 362
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
++ + + ++S +E + V+R R+G+DDGR+K L EIG++ V+RER RQIE
Sbjct: 363 EHVEKSMLRDDLENVINSLSPRE-RDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIE 421
Query: 154 SCAFR 140
+ A R
Sbjct: 422 AKAIR 426
[81][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 63.9 bits (154), Expect = 6e-09
Identities = 41/125 (32%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+AE +S+++L +VL + + SLE+ + D + + +
Sbjct: 303 EIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPE 362
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
++ + + ++S +E + V+R R+G+DDGR+K L EIG++ V+RER RQIE
Sbjct: 363 EHVEKSMLRDDLENVINSLSPRE-RDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIE 421
Query: 154 SCAFR 140
+ A R
Sbjct: 422 AKAIR 426
[82][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 63.9 bits (154), Expect = 6e-09
Identities = 44/125 (35%), Positives = 71/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+AE +++++L + + + P SLE IG +++ + G + G
Sbjct: 287 EMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 345
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 346 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 404
Query: 154 SCAFR 140
+ A R
Sbjct: 405 AKALR 409
[83][TOP]
>UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V564_9FIRM
Length = 383
Score = 62.4 bits (150), Expect = 2e-08
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ G+++ R+ ++ + P SLE IG D +L F +
Sbjct: 244 ELGRDPHPEEIAKEMGITVARVHEIMKIAQEPVSLETPIGEEEDSHLGDFIED--EAAPA 301
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + E + + T++ +E K V+R RFG++DGR + L E+G+ GV+RER RQ
Sbjct: 302 PAEAASFMLLREQLEEVLETLTDRE-KNVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQ 360
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 361 IEAKALR 367
[84][TOP]
>UniRef100_B4U677 RNA polymerase sigma factor n=1 Tax=Hydrogenobaculum sp. Y04AAS1
RepID=B4U677_HYDS0
Length = 578
Score = 62.0 bits (149), Expect = 2e-08
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQN--LKSFGSNC*S*G*N 341
E GR P EE+A+A +S +++ +L + + P SLE IG D++ LK F + S
Sbjct: 438 EYGREPSPEEIAKALNMSPEKVRKILKSIQEPISLETPIGDDEDTHLKDFIEDS-SISNP 496
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
TA + E+ I K T+S +E ++VI +RFG+ DG L ++G M ++RER RQ
Sbjct: 497 EEATARRLLREQ-IEKIINTLSDKE-REVIMYRFGLVDGIEHTLEQVGTMFNLTRERIRQ 554
Query: 160 IESCAFR 140
IES A R
Sbjct: 555 IESKAIR 561
[85][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 61.6 bits (148), Expect = 3e-08
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A +S++R+ ++ + P SLE IG D +L F + + +
Sbjct: 228 ELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPS 287
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + + T++ +E K V+R RFG+DDGR + L E+G+ GV+RER RQ
Sbjct: 288 E--AASFILLKEQLEEVLETLTPREEK-VLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQ 344
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 345 IEAKALR 351
[86][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 61.6 bits (148), Expect = 3e-08
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A +S++R+ ++ + P SLE IG D +L F + + +
Sbjct: 233 ELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPS 292
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + + T++ +E K V+R RFG+DDGR + L E+G+ GV+RER RQ
Sbjct: 293 E--AASFILLKEQLEEVLETLTPREEK-VLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQ 349
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 350 IEAKALR 356
[87][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/125 (34%), Positives = 70/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 238 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 296
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 297 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 355
Query: 154 SCAFR 140
+ A R
Sbjct: 356 AKALR 360
[88][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/125 (34%), Positives = 70/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 278 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 336
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 395
Query: 154 SCAFR 140
+ A R
Sbjct: 396 AKALR 400
[89][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/125 (34%), Positives = 70/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 278 EMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 336
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 395
Query: 154 SCAFR 140
+ A R
Sbjct: 396 AKALR 400
[90][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI-----------DQNLKSFG 368
ENGR P DEE+A+A L+++++ ++ T P SLE +G D+ L++
Sbjct: 261 ENGREPSDEELAQALDLTVEKVRSIRKTSMEPVSLETPVGQEEDSQLGDFLPDEKLEA-- 318
Query: 367 SNC*S*G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEML 188
S +H + E+ + + K+V++ RFG++DG + L E+G+
Sbjct: 319 --------PSDAASHQMLREQVAQVLDQLT--EREKRVLKLRFGLEDGTQRTLEEVGKEF 368
Query: 187 GVSRERNRQIESCAFR 140
GV+RER RQIE A R
Sbjct: 369 GVTRERIRQIEVKALR 384
[91][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/125 (34%), Positives = 70/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 276 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 334
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 335 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 393
Query: 154 SCAFR 140
+ A R
Sbjct: 394 AKALR 398
[92][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
RepID=P77870_HELMO
Length = 333
Score = 61.6 bits (148), Expect = 3e-08
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P+ EE+A+ + + R+ ++ + P SLE IG D +L F + +
Sbjct: 194 EFGREPNPEEIAKEMDIPVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPA-- 251
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + + T++ +E K V+R RFG+DDGR + L E+G+ GV+RER RQ
Sbjct: 252 PAEAASFILLKEQLEEVLETLTAREMK-VLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQ 310
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 311 IEAKALR 317
[93][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 61.6 bits (148), Expect = 3e-08
Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG--IDQNLKSFGSNC*S*G*N 341
E GR P EE+A+ L+ ++ ++ + P SLE IG D NL F + +
Sbjct: 186 EIGREPTPEEIAKEMDLTPDKVREIMKIAQEPVSLETPIGEENDSNLGDFIEDH-----D 240
Query: 340 S*RTAH*AIHE---EGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
+ A A +E E + + T++ +E + V+R RFGMDDGR + L E+G+ GV+RER
Sbjct: 241 APAPAEAAAYELLKEQLEEVLDTLTERE-ENVLRLRFGMDDGRTRTLEEVGKEFGVTRER 299
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 300 IRQIEAKALR 309
[94][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/125 (34%), Positives = 70/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 239 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 297
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 298 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 356
Query: 154 SCAFR 140
+ A R
Sbjct: 357 AKALR 361
[95][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/125 (34%), Positives = 70/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 278 EMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 336
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 395
Query: 154 SCAFR 140
+ A R
Sbjct: 396 AKALR 400
[96][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/125 (34%), Positives = 70/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 278 EMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 336
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 395
Query: 154 SCAFR 140
+ A R
Sbjct: 396 AKALR 400
[97][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/125 (34%), Positives = 70/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 278 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 336
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 395
Query: 154 SCAFR 140
+ A R
Sbjct: 396 AKALR 400
[98][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/125 (34%), Positives = 70/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E R P +EE+A +++++L + + + P SLE IG +++ + G + G
Sbjct: 278 EMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR-LGDFIEADGETPE 336
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ E + T+S +E + V+R R+G+DDGRMK L EIG++ V+RER RQIE
Sbjct: 337 DEVSKNLLREDLENVLDTLSPRE-RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 395
Query: 154 SCAFR 140
+ A R
Sbjct: 396 AKALR 400
[99][TOP]
>UniRef100_UPI0001853CA1 RNA polymerase sigma factor RpoD n=1 Tax=Helicobacter pylori
HPKX_438_AG0C1 RepID=UPI0001853CA1
Length = 319
Score = 61.2 bits (147), Expect = 4e-08
Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG
Sbjct: 178 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFV-------- 228
Query: 334 RTAH*AIHEEGIGKGNWTVSIQET--------KQVIRWRFGM-DDGRMKNLPEIGEMLGV 182
+ + I + + V I+ K VIR RFG+ DD + L EIG+ L V
Sbjct: 229 EDKNIVSSIDHIMREDLKVQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNV 288
Query: 181 SRERNRQIESCAFR 140
+RER RQIES A +
Sbjct: 289 TRERVRQIESSAIK 302
[100][TOP]
>UniRef100_B6JPJ0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori P12
RepID=B6JPJ0_HELP2
Length = 680
Score = 61.2 bits (147), Expect = 4e-08
Identities = 53/131 (40%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGS-----NC*S* 350
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG N S
Sbjct: 539 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFVEDKNIVSS 597
Query: 349 G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGM-DDGRMKNLPEIGEMLGVSRE 173
+ R A E + + N + K VIR RFG+ DD + L EIG+ L V+RE
Sbjct: 598 IDHIMREDLKAQIESVLDQLN-----EREKAVIRMRFGLLDDESDRTLEEIGKELNVTRE 652
Query: 172 RNRQIESCAFR 140
R RQIES A +
Sbjct: 653 RVRQIESSAIK 663
[101][TOP]
>UniRef100_B5Z9M1 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori G27
RepID=B5Z9M1_HELPG
Length = 682
Score = 61.2 bits (147), Expect = 4e-08
Identities = 53/131 (40%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGS-----NC*S* 350
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG N S
Sbjct: 541 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFVEDKNIVSS 599
Query: 349 G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGM-DDGRMKNLPEIGEMLGVSRE 173
+ R A E + + N + K VIR RFG+ DD + L EIG+ L V+RE
Sbjct: 600 IDHIMREDLKAQIESVLDQLN-----EREKAVIRMRFGLLDDESDRTLEEIGKELNVTRE 654
Query: 172 RNRQIESCAFR 140
R RQIES A +
Sbjct: 655 RVRQIESSAIK 665
[102][TOP]
>UniRef100_B2URS0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori Shi470
RepID=B2URS0_HELPS
Length = 661
Score = 61.2 bits (147), Expect = 4e-08
Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG
Sbjct: 520 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFV-------- 570
Query: 334 RTAH*AIHEEGIGKGNWTVSIQET--------KQVIRWRFGM-DDGRMKNLPEIGEMLGV 182
+ + I + + V I+ K VIR RFG+ DD + L EIG+ L V
Sbjct: 571 EDKNIVSSIDHIMREDLKVQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNV 630
Query: 181 SRERNRQIESCAFR 140
+RER RQIES A +
Sbjct: 631 TRERVRQIESSAIK 644
[103][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 61.2 bits (147), Expect = 4e-08
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++R+ ++ + P SLE IG D +L F + +
Sbjct: 232 EYGREPMPEEIAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPA-- 289
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + + T++ +E K V+R RFG+DDGR + L E+G+ GV+RER RQ
Sbjct: 290 PAEAASFILLKEQLEEVLETLTAREMK-VLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQ 348
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 349 IEAKALR 355
[104][TOP]
>UniRef100_A8ETJ7 RNA polymerase sigma factor n=1 Tax=Arcobacter butzleri RM4018
RepID=A8ETJ7_ARCB4
Length = 626
Score = 61.2 bits (147), Expect = 4e-08
Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
ENG+ PD EE+A+ GL + ++ V+ K P SLE IG D++ K FG
Sbjct: 485 ENGKEPDIEEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDEDGK-FGDFVPD---EKA 540
Query: 334 RTAH*AIHEEGI-GKGNWTVS-IQETKQ-VIRWRFG-MDDGRMKNLPEIGEMLGVSRERN 167
T I +E + G+ + +S + E +Q VIR RFG M+D + L EIG+ L V+RER
Sbjct: 541 PTPIDNIMKEDLQGQIDQILSQLNEREQAVIRMRFGLMEDASDRTLEEIGKELNVTRERV 600
Query: 166 RQIESCAFR 140
RQIES A +
Sbjct: 601 RQIESSAIK 609
[105][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
RepID=A4J7B9_DESRM
Length = 367
Score = 61.2 bits (147), Expect = 4e-08
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ +S +++ +L + P SLE IG D +L F + +
Sbjct: 228 ELGREPSPEEIAKEMDISGEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDADARA-- 285
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + E + + T++ +E K V+R RFG+DDGR + L E+G+ GV+RER RQ
Sbjct: 286 PAEEASFTLLREQLDEVLKTLTDREQK-VLRLRFGLDDGRARTLEEVGQKFGVTRERIRQ 344
Query: 160 IESCAFR 140
IE+ R
Sbjct: 345 IEAKTLR 351
[106][TOP]
>UniRef100_Q9S1D0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori
RepID=Q9S1D0_HELPY
Length = 675
Score = 61.2 bits (147), Expect = 4e-08
Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG
Sbjct: 534 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFV-------- 584
Query: 334 RTAH*AIHEEGIGKGNWTVSIQET--------KQVIRWRFGM-DDGRMKNLPEIGEMLGV 182
+ A + I + + I+ K VIR RFG+ DD + L EIG+ L V
Sbjct: 585 EDKNIASSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNV 644
Query: 181 SRERNRQIESCAFR 140
+RER RQIES A +
Sbjct: 645 TRERVRQIESSAIK 658
[107][TOP]
>UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583
RepID=C9L8C6_RUMHA
Length = 330
Score = 61.2 bits (147), Expect = 4e-08
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+AE +S++R+ +L + P SLE IG D +L F + N
Sbjct: 191 ELGREPHPEEIAEEMNMSVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 245
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E + + T++ +E K V+R RFG+DDGR + L E+G+ V+RER
Sbjct: 246 VPVPADAAAFTLLKEQLVEVLGTLTEREQK-VLRLRFGLDDGRARTLEEVGKEFNVTRER 304
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 305 IRQIEAKALR 314
[108][TOP]
>UniRef100_B9Y1K0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori B128
RepID=B9Y1K0_HELPY
Length = 679
Score = 61.2 bits (147), Expect = 4e-08
Identities = 53/131 (40%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGS-----NC*S* 350
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG N S
Sbjct: 538 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFVEDKNIVSS 596
Query: 349 G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGM-DDGRMKNLPEIGEMLGVSRE 173
+ R A E + + N + K VIR RFG+ DD + L EIG+ L V+RE
Sbjct: 597 IDHIMREDLKAQIESVLDQLN-----EREKAVIRMRFGLLDDESDRTLEEIGKELNVTRE 651
Query: 172 RNRQIESCAFR 140
R RQIES A +
Sbjct: 652 RVRQIESSAIK 662
[109][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 61.2 bits (147), Expect = 4e-08
Identities = 40/125 (32%), Positives = 70/125 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+A+ +S+++L VL + + SLE+ + D + + +
Sbjct: 286 EIGRSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPE 345
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
++ + + ++S +E + V+R R+G+DDGR+K L EIG++ V+RER RQIE
Sbjct: 346 EHVEKSMLRDDLENVINSLSPRE-RDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIE 404
Query: 154 SCAFR 140
+ A R
Sbjct: 405 AKAIR 409
[110][TOP]
>UniRef100_P55993 RNA polymerase sigma factor rpoD n=1 Tax=Helicobacter pylori
RepID=RPOD_HELPY
Length = 671
Score = 61.2 bits (147), Expect = 4e-08
Identities = 53/131 (40%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGS-----NC*S* 350
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG N S
Sbjct: 530 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFVEDKNIVSS 588
Query: 349 G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGM-DDGRMKNLPEIGEMLGVSRE 173
+ R A E + + N + K VIR RFG+ DD + L EIG+ L V+RE
Sbjct: 589 IDHIMREDLKAQIESVLDQLN-----EREKAVIRMRFGLLDDESDRTLEEIGKELNVTRE 643
Query: 172 RNRQIESCAFR 140
R RQIES A +
Sbjct: 644 RVRQIESSAIK 654
[111][TOP]
>UniRef100_Q17VT9 RNA polymerase sigma factor n=1 Tax=Helicobacter acinonychis str.
Sheeba RepID=Q17VT9_HELAH
Length = 659
Score = 60.8 bits (146), Expect = 5e-08
Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
ENG+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG
Sbjct: 518 ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFV-------- 568
Query: 334 RTAH*AIHEEGIGKGNWTVSIQ--------ETKQVIRWRFGM-DDGRMKNLPEIGEMLGV 182
+ + I + + V I+ K VIR RFG+ DD + L EIG+ L V
Sbjct: 569 EDKNIVSSIDHIMREDLKVQIEGVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNV 628
Query: 181 SRERNRQIESCAFR 140
+RER RQIES A +
Sbjct: 629 TRERVRQIESSAIK 642
[112][TOP]
>UniRef100_C4CH81 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CH81_9CHLR
Length = 538
Score = 60.8 bits (146), Expect = 5e-08
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A GL ++ +L + P SLE IG D NL F + + +
Sbjct: 399 ELGREPTSEEIAAEMGLPPDKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPS 458
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + ++ +E ++V+ RFG+DDGR + L E+G GV+RER RQ
Sbjct: 459 D--AASLKLLKEQVDDVLGSLGDRE-RRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQ 515
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 516 IEAKALR 522
[113][TOP]
>UniRef100_A9RG56 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RG56_PHYPA
Length = 581
Score = 60.8 bits (146), Expect = 5e-08
Identities = 43/125 (34%), Positives = 69/125 (55%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
+ GR DEEVA A G+S+++L +L + + P S++Q IG D++L + ++
Sbjct: 439 DQGRQARDEEVATAVGISVEKLDFILKSARLPASMDQLIGRDKDLPLWEMVADKGFNSAD 498
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ ++ I T+S E ++V+R RFG+DD + L +IG V+RER RQIE
Sbjct: 499 DFLTNEVLKQDIDGVLQTLSPTE-REVLRLRFGLDDAQSMTLKDIGIFFKVTRERIRQIE 557
Query: 154 SCAFR 140
A R
Sbjct: 558 VRALR 562
[114][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 60.5 bits (145), Expect = 7e-08
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS*RT 329
GR P EE+AE +S K+ +L + SLE+ +G D+N K +
Sbjct: 136 GREPSIEEIAEEMNISEKKAKVLLEIVQGIVSLEEPVGEDENGKLGDIIADKEAVDPVEE 195
Query: 328 AH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIG-EMLGVSRERNRQIES 152
+ +E + + T++ +E K V+R RFG+DDG+++ L E+G E+ G+SRER RQIE+
Sbjct: 196 LESMLLKEQVDEVLSTLAPREEK-VLRLRFGLDDGKIRTLEEVGKELGGISRERVRQIET 254
Query: 151 CAFR 140
A +
Sbjct: 255 KALK 258
[115][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
RepID=B0MPW5_9FIRM
Length = 358
Score = 60.5 bits (145), Expect = 7e-08
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
ENG P +E+A+ G+++ R+ +L + P SLE IG D +L F +
Sbjct: 219 ENGHEPTPQEIADRLGITVDRVREILRISQDPVSLETPIGEEEDSHLGDFIPD--EDAPA 276
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + + T++ +E K V+R RFG++DGR + L E+G+ V+RER RQ
Sbjct: 277 PAEAASRTLLKEQLSEILGTLTPREEK-VLRLRFGLEDGRPRTLEEVGKEFDVTRERIRQ 335
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 336 IEAKALR 342
[116][TOP]
>UniRef100_Q04T13 RNA polymerase sigma factor n=2 Tax=Leptospira borgpetersenii
serovar Hardjo-bovis RepID=Q04T13_LEPBJ
Length = 585
Score = 60.1 bits (144), Expect = 9e-08
Identities = 45/125 (36%), Positives = 68/125 (54%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P++EE+AE G ++++ V + P SLE +G +++ + +
Sbjct: 445 EFGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPV 504
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
TA +I E I + T+ +E K VIR RFG+DDG + L E+G V+RER RQIE
Sbjct: 505 NTAASSILAEQIRQVLHTLPAREQK-VIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIE 563
Query: 154 SCAFR 140
+ A R
Sbjct: 564 AKALR 568
[117][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
RepID=B8CXH1_HALOH
Length = 358
Score = 60.1 bits (144), Expect = 9e-08
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+ E G+ +++ +L + P SLE IG D +L F + +
Sbjct: 219 EKGREPTPEEIGEEMGMPAEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDEDAPAPA 278
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
S A + E + T++ +E K+V+ RFG++DGR + L E+G+ GV+RER RQ
Sbjct: 279 S--AASFTLLREQLDDVLDTLTDRE-KRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQ 335
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 336 IEAKALR 342
[118][TOP]
>UniRef100_C0D895 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0D895_9CLOT
Length = 376
Score = 60.1 bits (144), Expect = 9e-08
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A +S++R+S +L + P SLE IG D +L F + +
Sbjct: 236 ELGREPTTEEIAARAEMSVERVSEILKMSQEPVSLETPIGEEEDSHLGDFIQDD-NVTVP 294
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ +HE+ + T + ++V+R RFG+DDGR + L E+G V+RER RQ
Sbjct: 295 QDAATYTLLHEQLMEV--LTTLTEREQKVLRLRFGLDDGRPRTLEEVGREFKVTRERIRQ 352
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 353 IEAKALR 359
[119][TOP]
>UniRef100_C0CZA7 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0CZA7_9CLOT
Length = 405
Score = 60.1 bits (144), Expect = 9e-08
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSN-C*S*G*NS*R 332
GR P + E+AEA G++ KR+ ++ T SLE +G D++ S G + G ++
Sbjct: 268 GRDPSNRELAEAVGMTEKRVEELIQTSGDTVSLETPVG-DEDGSSLGDFVADNAGDSTED 326
Query: 331 TAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIES 152
A + E I ++ +E +QVI+ RFG+++GR L E+G V+RER RQIE+
Sbjct: 327 QAENVLLREEIDSMLQGLNERE-RQVIKLRFGLENGRPLTLEEVGRQFNVTRERIRQIET 385
Query: 151 CAFR 140
A R
Sbjct: 386 AALR 389
[120][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 59.7 bits (143), Expect = 1e-07
Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ LS ++ ++ + P SLE IG D NL F + +
Sbjct: 228 ELGREPTPEEIAKEMELSTDKVREIMKISQEPVSLETPIGEENDSNLGDFIEDQ-----D 282
Query: 340 S*RTAH*AIHE---EGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
+ A A +E E + T++ +E + V+R RFG++DGR + L E+G++ GV+RER
Sbjct: 283 ALAPADAASYELLKEQLEHVLDTLTERE-ENVLRLRFGLEDGRSRTLEEVGKVFGVTRER 341
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 342 IRQIEAKALR 351
[121][TOP]
>UniRef100_Q6MEU8 RNA polymerase sigma factor n=1 Tax=Candidatus Protochlamydia
amoebophila UWE25 RepID=Q6MEU8_PARUW
Length = 554
Score = 59.7 bits (143), Expect = 1e-07
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P EE+A+ G++ +R+ + + P SL+ ++G D FG G +S
Sbjct: 410 ETGREPSPEELAKELGITAERVREIYKIAQHPISLQAEVG-DGGESQFGDFLEDTGADSP 468
Query: 334 RTAH*-AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
A +I ++ +G+ T+S +E K +I+ RFG+ DG+ K L E+G V+RER RQI
Sbjct: 469 AEATGYSILKDKMGEVLSTLSDRERKVLIQ-RFGLLDGKPKTLEEVGVEFNVTRERIRQI 527
Query: 157 ESCAFR 140
E+ A R
Sbjct: 528 EAKALR 533
[122][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 59.7 bits (143), Expect = 1e-07
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG--IDQNLKSFGSNC*S*G*NS* 335
GR P EVAE +++ R+ ++ + P SLE IG D +L F ++ +
Sbjct: 221 GREPTPAEVAEEMDIAVDRVIEIMKVAQEPVSLETPIGEEDDSHLGDFITD--EEAESPE 278
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+A + E + G + ++V+R RFG+DDGR + L E+G+ GV+RER RQIE
Sbjct: 279 ESASFVLLREHL-DGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIE 337
Query: 154 SCAFR 140
+ A R
Sbjct: 338 AKALR 342
[123][TOP]
>UniRef100_B6FR93 RNA polymerase sigma factor n=1 Tax=Clostridium nexile DSM 1787
RepID=B6FR93_9CLOT
Length = 370
Score = 59.7 bits (143), Expect = 1e-07
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+AE + ++R+ +L + P SLE IG D +L F + N
Sbjct: 231 ELGREPLPEEIAEELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 285
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E +G+ T++ +E K V+R RFGM+DGR + L E+G+ V+RER
Sbjct: 286 VPVPAEAAAATLLKEQLGEVLDTLTDREQK-VLRLRFGMNDGRARTLEEVGKEFDVTRER 344
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 345 IRQIEAKALR 354
[124][TOP]
>UniRef100_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus Phytoplasma mali AT
RepID=B3QZV6_PHYMT
Length = 419
Score = 59.3 bits (142), Expect = 1e-07
Identities = 43/129 (33%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS*R 332
R P EE++E +S K+L + + K P SLE ++G D +L F S+ S
Sbjct: 277 REPTIEELSEFINISEKKLRIIEIIKKKPISLEARVGEKDDSSLGEFISDPDS------L 330
Query: 331 TAH*AIHEEGIGKGNWTVSIQET-----KQVIRWRFGMDDGRMKNLPEIGEMLGVSRERN 167
+ H + +E I K +++T ++++R R+G+ +G++ L E+G + GV+RER
Sbjct: 331 SPHDYMLQE-IMKNTLNEILEDTLTDREEKILRMRYGLSNGKVHTLEEVGNVFGVTRERI 389
Query: 166 RQIESCAFR 140
RQIE+ AFR
Sbjct: 390 RQIEAKAFR 398
[125][TOP]
>UniRef100_B0SHG5 RNA polymerase sigma factor n=2 Tax=Leptospira biflexa serovar
Patoc RepID=B0SHG5_LEPBA
Length = 590
Score = 59.3 bits (142), Expect = 1e-07
Identities = 44/125 (35%), Positives = 68/125 (54%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P ++E+AE G ++++ AV + P SLE +G +++ + +
Sbjct: 451 EFGRDPSNDEIAERLGWPVQKVKAVKNVAREPISLEIPVGSEEDSELGDFIEDKEVISPL 510
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+A +I E I + T+ +E K VIR RFG+DDG + L E+G V+RER RQIE
Sbjct: 511 NSAASSILSEQIRQVLQTLPAREQK-VIRMRFGLDDGYAQTLEEVGYQFKVTRERIRQIE 569
Query: 154 SCAFR 140
+ A R
Sbjct: 570 AKALR 574
[126][TOP]
>UniRef100_O33992 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori
RepID=O33992_HELPY
Length = 680
Score = 59.3 bits (142), Expect = 1e-07
Identities = 52/131 (39%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGS-----NC*S* 350
E G+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG N S
Sbjct: 539 ETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFVEDKNIVSS 597
Query: 349 G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGM-DDGRMKNLPEIGEMLGVSRE 173
+ R A E + + N + K VIR RFG+ DD + L EIG+ L V+RE
Sbjct: 598 IDHIMREDLKAQIESVLDQLN-----EREKAVIRMRFGLLDDESERTLEEIGKELNVTRE 652
Query: 172 RNRQIESCAFR 140
R RQIES A +
Sbjct: 653 RVRQIESSAIK 663
[127][TOP]
>UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
RepID=A8UQQ5_9AQUI
Length = 571
Score = 59.3 bits (142), Expect = 1e-07
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQN--LKSFGSNC*S*G*N 341
E GR P EE+A+ G++ ++ VL + + P SLE IG D++ LK F + N
Sbjct: 432 ELGREPTPEEIAKHLGMTPDKVRKVLRSAQEPISLETPIGDDEDTFLKDFIED--KSVPN 489
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ E + + T+S +E ++++R+R+G+ DG L ++G+M V+RER RQ
Sbjct: 490 PEEYVSRKLLREQLERVLETLSDKE-REILRYRYGLVDGTEYTLEQVGKMFNVTRERIRQ 548
Query: 160 IESCAFR 140
IES A R
Sbjct: 549 IESKAIR 555
[128][TOP]
>UniRef100_A8RMR2 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8RMR2_9CLOT
Length = 378
Score = 59.3 bits (142), Expect = 1e-07
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A L ++R+S ++ + P SLE IG D +L F +
Sbjct: 238 ELGREPTTEEIAARLDLPVERVSEIMKMSQEPVSLETPIGEEEDSHLGDFIQDDNVLVPQ 297
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A +HE+ + + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 298 D-AAAFTLLHEQ-LMEVLLTLTEREQK-VLRLRFGLDDGRPRTLEEVGKQFNVTRERIRQ 354
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 355 IEAKALR 361
[129][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 58.9 bits (141), Expect = 2e-07
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A + ++R+ + + P SLE IG D +L F + +
Sbjct: 249 ELGREPTPEEIAAVMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPA-- 306
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + + +++ +E K V+R RFG+DDGR + L E+G++ GV+RER RQ
Sbjct: 307 PAEAASFTLLKEQLEEVLESLTPREEK-VLRLRFGLDDGRARTLEEVGQVFGVTRERIRQ 365
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 366 IEAKALR 372
[130][TOP]
>UniRef100_Q1CV66 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori HPAG1
RepID=Q1CV66_HELPH
Length = 692
Score = 58.9 bits (141), Expect = 2e-07
Identities = 52/131 (39%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGS-----NC*S* 350
E G+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG N S
Sbjct: 551 ETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFVEDKNIVSS 609
Query: 349 G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGM-DDGRMKNLPEIGEMLGVSRE 173
+ R A E + + N + K VIR RFG+ DD + L EIG+ L V+RE
Sbjct: 610 IDHIMREDLKAQIESVLDQLN-----EREKAVIRMRFGLLDDESDRTLEEIGKELNVTRE 664
Query: 172 RNRQIESCAFR 140
R RQIES A +
Sbjct: 665 RVRQIESSAIK 675
[131][TOP]
>UniRef100_C7BXY7 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori B38
RepID=C7BXY7_HELPB
Length = 679
Score = 58.9 bits (141), Expect = 2e-07
Identities = 49/134 (36%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E G+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG
Sbjct: 538 ETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFV-------- 588
Query: 334 RTAH*AIHEEGIGKGNWTVSIQET--------KQVIRWRFGM-DDGRMKNLPEIGEMLGV 182
+ + I + + V I+ K VIR RFG+ DD + L EIG+ L V
Sbjct: 589 EDKNIVSSIDHIMREDLKVQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNV 648
Query: 181 SRERNRQIESCAFR 140
+RER RQIES A +
Sbjct: 649 TRERVRQIESSAIK 662
[132][TOP]
>UniRef100_O32637 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori
RepID=O32637_HELPY
Length = 685
Score = 58.9 bits (141), Expect = 2e-07
Identities = 52/131 (39%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGS-----NC*S* 350
E G+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG N S
Sbjct: 544 ETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFVEDKNIVSS 602
Query: 349 G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGM-DDGRMKNLPEIGEMLGVSRE 173
+ R A E + + N + K VIR RFG+ DD + L EIG+ L V+RE
Sbjct: 603 IDHIMREDLKAQIESVLDQLN-----EREKAVIRMRFGLLDDESDRTLEEIGKELNVTRE 657
Query: 172 RNRQIESCAFR 140
R RQIES A +
Sbjct: 658 RVRQIESSAIK 668
[133][TOP]
>UniRef100_C6LFQ8 RNA polymerase sigma factor n=1 Tax=Bryantella formatexigens DSM
14469 RepID=C6LFQ8_9FIRM
Length = 374
Score = 58.9 bits (141), Expect = 2e-07
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EEVAE + + R+ VL + P SL+ IG D +L F + + +
Sbjct: 235 ELGREPTPEEVAERLNVPVSRVREVLKISRDPVSLDTPIGEEDDSHLGDFIEDDSALSPS 294
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+A ++ E +G +++ +E +QV++ RFG+ DGR + L E+G+ V+RER RQ
Sbjct: 295 D--SAAFSMLREELGTALESLTDRE-RQVVQLRFGLIDGRARTLEEVGKEFNVTRERIRQ 351
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 352 IEAKALR 358
[134][TOP]
>UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA
RepID=C6JGK6_9FIRM
Length = 375
Score = 58.9 bits (141), Expect = 2e-07
Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ +S++R+ +L + P SLE IG D +L F + N
Sbjct: 236 ELGREPTPEEIAKEMDMSVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 290
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E + + T++ +E K V+R RFG+DDGR + L E+G+ V+RER
Sbjct: 291 VPVPADAAAFTLLKEQLVEVLSTLTDREQK-VLRLRFGLDDGRARTLEEVGKEFNVTRER 349
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 350 IRQIEAKALR 359
[135][TOP]
>UniRef100_Q9ZMY3 RNA polymerase sigma factor rpoD n=1 Tax=Helicobacter pylori J99
RepID=RPOD_HELPJ
Length = 681
Score = 58.9 bits (141), Expect = 2e-07
Identities = 52/131 (39%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGS-----NC*S* 350
E G+ PD E VAE GLS+ ++ V+ K P SLE +G D + K FG N S
Sbjct: 540 ETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFVEDKNIVSS 598
Query: 349 G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGM-DDGRMKNLPEIGEMLGVSRE 173
+ R A E + + N + K VIR RFG+ DD + L EIG+ L V+RE
Sbjct: 599 IDHIMREDLKAQIESVLDQLN-----EREKAVIRMRFGLLDDESDRTLEEIGKELNVTRE 653
Query: 172 RNRQIESCAFR 140
R RQIES A +
Sbjct: 654 RVRQIESSAIK 664
[136][TOP]
>UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV68_SULAA
Length = 586
Score = 58.5 bits (140), Expect = 3e-07
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQ--NLKSF--GSNC*S*G 347
E GR P EE+A+ G+ +++ +L T + P SLE IG D+ +L F + S
Sbjct: 445 ELGREPTPEEIAKKVGMPAEKVKKILRTSQEPISLETPIGTDEETHLGDFIEDKSVLSPE 504
Query: 346 *NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERN 167
+ + A +E + T+S +E +QV+R+RFG++D L ++G+ GV+RER
Sbjct: 505 AHMLKNALRMQLDEVLS----TLSERE-EQVLRYRFGLEDDTEHTLEQVGKRFGVTRERI 559
Query: 166 RQIESCAFR 140
RQIE+ A R
Sbjct: 560 RQIEAKALR 568
[137][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium papyrosolvens DSM 2782
RepID=C7IFS3_9CLOT
Length = 359
Score = 58.5 bits (140), Expect = 3e-07
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P +E+A+ G+S+ ++ ++ + P SLE IG D +L F + +
Sbjct: 220 ELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPA-- 277
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 278 PAEAAAFTLLKEQLIDVLDTLTAREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 336
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 337 IEAKALR 343
[138][TOP]
>UniRef100_C5EJF9 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EJF9_9FIRM
Length = 374
Score = 58.5 bits (140), Expect = 3e-07
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A L ++R+S ++ + P SLE IG D +L F + +
Sbjct: 234 ELGREPTTEEIAARADLPVERVSEIMKMAQEPVSLETPIGEEEDSHLGDFIQDD-NVMVP 292
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A +HE+ + + T++ +E K V++ RFG+DDGR + L E+G V+RER RQ
Sbjct: 293 QDAAAFTLLHEQ-LMEVLLTLTEREQK-VLKLRFGLDDGRPRTLEEVGRQFNVTRERIRQ 350
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 351 IEAKALR 357
[139][TOP]
>UniRef100_A6C4Z7 RNA polymerase sigma factor n=1 Tax=Planctomyces maris DSM 8797
RepID=A6C4Z7_9PLAN
Length = 561
Score = 58.5 bits (140), Expect = 3e-07
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
ENGR P EE AE G+S++ VL + P SL++ +G ++ FG +S
Sbjct: 398 ENGREPTLEETAEVAGISLEETRRVLKISRHPISLDRPVGESED-SYFGDFIEDSDSDSP 456
Query: 334 -RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
TA + ++ I T++ +E +++I+ RFG+ DG L E+G + V+RER RQI
Sbjct: 457 VNTASQEMLKDKIDHVLKTLTYRE-REIIKLRFGLGDGYTYTLEEVGRIFKVTRERVRQI 515
Query: 157 ESCAFR 140
E+ A R
Sbjct: 516 EAKAVR 521
[140][TOP]
>UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR
Length = 535
Score = 58.5 bits (140), Expect = 3e-07
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E P EE+A G+++ +L +L + P S++Q + DQN
Sbjct: 393 EGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITA-------- 444
Query: 334 RTAH*AIHEEGIGK--------GNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVS 179
I + + K G + + +++IR RFG++DG+ K+L EIG + G+S
Sbjct: 445 -DTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLS 503
Query: 178 RERNRQIESCA 146
+ER RQ+ES A
Sbjct: 504 KERVRQLESRA 514
[141][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
RepID=C4Z4Y6_EUBE2
Length = 434
Score = 58.2 bits (139), Expect = 3e-07
Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+AE + ++R+ + + P SLE IG D +L F + N
Sbjct: 295 ELGREPSPEEIAENMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 349
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E + + T++ +E K V+R RFGMDDGR + L E+G+ V+RER
Sbjct: 350 VPVPAEAAASTLLKEQLVEVLGTLTEREQK-VLRLRFGMDDGRARTLEEVGKEFNVTRER 408
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 409 IRQIEAKALR 418
[142][TOP]
>UniRef100_A9KRZ0 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KRZ0_CLOPH
Length = 371
Score = 58.2 bits (139), Expect = 3e-07
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P ++E+A+A L ++++ +L P SL+ IG D +L F + G
Sbjct: 231 ELGREPSEQELADAMNLPIEKVREILKVSADPISLDTPIGEEDDSHLGDFIKDDTIMGPE 290
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A A+ ++ I K T++ +E ++V+ RFG+ DGR + L E+G+ V+RER RQ
Sbjct: 291 D--AASYAVLQDQISKLLDTLTERE-QRVLILRFGLQDGRSRTLEEVGKEFNVTRERIRQ 347
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 348 IEAKALR 354
[143][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 58.2 bits (139), Expect = 3e-07
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ ++ ++ +L + P SLE IG D +L F + +
Sbjct: 224 ELGRDPSPEEIAKEMNITEDKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDHEARA-- 281
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + E + + T++ +E ++V+R RFG+DDGR + L E+G+ GV+RER RQ
Sbjct: 282 PAEEASFTLLREQLDEVLKTLTERE-QRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQ 340
Query: 160 IESCAFR 140
IE+ R
Sbjct: 341 IEAKTLR 347
[144][TOP]
>UniRef100_B9XX11 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori 98-10
RepID=B9XX11_HELPY
Length = 671
Score = 58.2 bits (139), Expect = 3e-07
Identities = 52/131 (39%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGS-----NC*S* 350
ENG+ PD E VAE LS+ ++ V+ K P SLE +G D + K FG N S
Sbjct: 530 ENGKEPDLEVVAEEVRLSLDKVKNVIKVTKEPISLETPVGNDDDGK-FGDFVEDKNIVSS 588
Query: 349 G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGM-DDGRMKNLPEIGEMLGVSRE 173
+ R A E + + N + K VIR RFG+ DD + L EIG+ L V+RE
Sbjct: 589 IDHIMREDLKAQIESVLDQLN-----EREKAVIRMRFGLLDDESDRTLEEIGKELNVTRE 643
Query: 172 RNRQIESCAFR 140
R RQIES A +
Sbjct: 644 RVRQIESSAIK 654
[145][TOP]
>UniRef100_B4WSK5 RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WSK5_9SYNE
Length = 298
Score = 58.2 bits (139), Expect = 3e-07
Identities = 41/120 (34%), Positives = 68/120 (56%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
++GR P E+A+ATG ++K++ L + P SL+ K+G +Q+ + G G
Sbjct: 161 QHGRTPTASEIAQATGFTIKQVREYLDRSRQPLSLDLKVGDNQDTQ-LGDLLEDDGQTPD 219
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A + + + + ++ Q+ +QVI RFG++DG+ L +IG ML +SRER RQIE
Sbjct: 220 DYATASSLKSDLKRIMADLTPQQ-QQVIALRFGLEDGKNMTLAKIGAMLDISRERVRQIE 278
[146][TOP]
>UniRef100_A8DJM2 RNA polymerase sigma factor n=1 Tax=Candidatus Chloracidobacterium
thermophilum RepID=A8DJM2_9BACT
Length = 549
Score = 58.2 bits (139), Expect = 3e-07
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGID--QNLKSFGSNC*S*G*N 341
E GR P EE+A+ T L + ++ L + P SLE IG D NL SF + N
Sbjct: 406 ELGREPTHEELAQRTDLPVAKVRQALKIAQEPISLETPIGDDGESNLGSFIEDR-----N 460
Query: 340 S*RTAH*AIHEEGIGKG--NWTVSIQET-----KQVIRWRFGMD-DGRMKNLPEIGEMLG 185
S A E +GKG T+ + T +Q+++ RFG+D DG+ + L E+G
Sbjct: 461 SLNPA-----EMIVGKGLREATLEVLSTLTPREEQILKMRFGLDGDGQERTLEEVGRYFH 515
Query: 184 VSRERNRQIESCAFR 140
V+RER RQIE+ A R
Sbjct: 516 VTRERIRQIEAKALR 530
[147][TOP]
>UniRef100_P61540 RNA polymerase sigma factor rpoD n=2 Tax=Leptospira interrogans
RepID=RPOD_LEPIC
Length = 585
Score = 58.2 bits (139), Expect = 3e-07
Identities = 44/125 (35%), Positives = 67/125 (53%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P++EE+AE G ++++ V + P SLE +G +++ + +
Sbjct: 445 EFGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPV 504
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A +I E I + T+ +E K VIR RFG+DDG + L E+G V+RER RQIE
Sbjct: 505 NAAASSILAEQIRQVLHTLPAREQK-VIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIE 563
Query: 154 SCAFR 140
+ A R
Sbjct: 564 AKALR 568
[148][TOP]
>UniRef100_Q2JDI1 RNA polymerase sigma factor n=1 Tax=Frankia sp. CcI3
RepID=Q2JDI1_FRASC
Length = 409
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS* 335
GR P EE+A+ L+ ++ +L + P SLE IG D +L F +C +
Sbjct: 272 GREPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDCDAVVPVD- 330
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A + +E + T+S +E K+VI+ RFG+ DG + L E+G GV+RER RQIE
Sbjct: 331 -AASFILLQEQLDSVLHTLSDRE-KKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIE 388
Query: 154 S 152
S
Sbjct: 389 S 389
[149][TOP]
>UniRef100_Q0RP58 RNA polymerase sigma factor n=1 Tax=Frankia alni ACN14a
RepID=Q0RP58_FRAAA
Length = 409
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS* 335
GR P EE+A+ L+ ++ +L + P SLE IG D +L F +C +
Sbjct: 272 GREPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDCDAVVPVD- 330
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A + +E + T+S +E K+VI+ RFG+ DG + L E+G GV+RER RQIE
Sbjct: 331 -AASFILLQEQLDSVLHTLSDRE-KKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIE 388
Query: 154 S 152
S
Sbjct: 389 S 389
[150][TOP]
>UniRef100_O67464 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus
RepID=O67464_AQUAE
Length = 575
Score = 57.8 bits (138), Expect = 4e-07
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQN--LKSFGSNC*S*G*N 341
ENGR P EE+AE + ++++ V+ + P SLE IG D + LK F + N
Sbjct: 436 ENGREPTPEEIAEYLDIPVEKVKKVMKFSQEPISLETPIGDDDDTFLKDFIED--KSIPN 493
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ E + K T+S +E ++++ +R+G+ DG L ++G+M V+RER RQ
Sbjct: 494 PEEQVTRKLLREQLQKVLSTLSEKE-REILMYRYGLVDGTEYTLEQVGKMFNVTRERIRQ 552
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 553 IENKALR 559
[151][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P +E+A+ G+S+ ++ ++ + P SLE IG D +L F + +
Sbjct: 220 ELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPA-- 277
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 278 PAEAAAFTLLKEQLIDVLDTLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 336
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 337 IEAKALR 343
[152][TOP]
>UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC
BAA-835 RepID=B2UM02_AKKM8
Length = 688
Score = 57.8 bits (138), Expect = 4e-07
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*-NS 338
E GR P EE+AE L ++R+ +VL + P SL+ +G D + SFG N
Sbjct: 545 EYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVG-DSDDTSFGDFIEDKAAENP 603
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
A + +E I T++ +E ++VI RFG+ DG + L E+G V+RER RQI
Sbjct: 604 MEEASFSFLKEKIKDVLDTLTDRE-REVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQI 662
Query: 157 ESCAFR 140
E+ A R
Sbjct: 663 EAKALR 668
[153][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 57.8 bits (138), Expect = 4e-07
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A LS +++ +L + P SLE IG D +L F +
Sbjct: 233 ELGRDPKPEEIAAEMDLSEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD--EDAPA 290
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A ++ +E + + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 291 PAEAAAFSLLKEQLVEVLDTLTPREQK-VLRLRFGLDDGRARTLEEVGKKFDVTRERIRQ 349
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 350 IEAKALR 356
[154][TOP]
>UniRef100_A8KYX9 RNA polymerase sigma factor n=1 Tax=Frankia sp. EAN1pec
RepID=A8KYX9_FRASN
Length = 409
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS* 335
GR P EE+A+ L+ ++ +L + P SLE IG D +L F +C +
Sbjct: 272 GREPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDCDAVVPVD- 330
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A + +E + T+S +E K+VI+ RFG+ DG + L E+G GV+RER RQIE
Sbjct: 331 -AASFILLQEQLDSVLHTLSDRE-KKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIE 388
Query: 154 S 152
S
Sbjct: 389 S 389
[155][TOP]
>UniRef100_Q6TE13 RNA polymerase sigma factor n=1 Tax=Frankia sp. EaI-12
RepID=Q6TE13_9ACTO
Length = 409
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS* 335
GR P EE+A+ L+ ++ +L + P SLE IG D +L F +C +
Sbjct: 272 GREPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDCDAVVPVD- 330
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A + +E + T+S +E K+VI+ RFG+ DG + L E+G GV+RER RQIE
Sbjct: 331 -AASFILLQEQLDSVLHTLSDRE-KKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIE 388
Query: 154 S 152
S
Sbjct: 389 S 389
[156][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS* 335
GR P EE+A+ + + R+ ++ + P SLE IG D +L F + +
Sbjct: 236 GREPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAD- 294
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A + +E + T++ +E K V+R RFG+DDGR + L E+G+ GV+RER RQIE
Sbjct: 295 -AASFMLLKEQLEDVLDTLTPREEK-VLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIE 352
Query: 154 SCAFR 140
+ A R
Sbjct: 353 AKALR 357
[157][TOP]
>UniRef100_C7N4Z8 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family n=1 Tax=Slackia
heliotrinireducens DSM 20476 RepID=C7N4Z8_SLAHD
Length = 394
Score = 57.8 bits (138), Expect = 4e-07
Identities = 43/121 (35%), Positives = 63/121 (52%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P EE+ E GLS +R+ + + P SLE IG +++ +
Sbjct: 254 ELGRDPSPEEIGEKMGLSAERVREIQKLSQEPVSLETPIGEEEDSQLGDFIEDDSAIVPV 313
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A A+ +E + K T+ +E VI+ RFG++DG+ L E+G GV+RER RQIE
Sbjct: 314 DAASFAMMQEQLSKVLDTLGERERNVVIK-RFGLEDGQPHTLEEVGREFGVTRERIRQIE 372
Query: 154 S 152
S
Sbjct: 373 S 373
[158][TOP]
>UniRef100_C1TPF1 RNA polymerase sigma factor n=1 Tax=Dethiosulfovibrio peptidovorans
DSM 11002 RepID=C1TPF1_9BACT
Length = 381
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS* 335
GR P DEE++EA + ++ + + P SLE IG D L F +
Sbjct: 244 GREPTDEEISEAMEIESTKVEEIRRIAQLPVSLETPIGEEEDSQLGDFIEDRDMPSPEDA 303
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ + +HE+ I +S +E ++V+R+RFG++DGR L E+G GV+RER RQIE
Sbjct: 304 ASCN-LLHEQ-IEDMLDALSDRE-REVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIE 360
Query: 154 SCAFR 140
+ A R
Sbjct: 361 AKALR 365
[159][TOP]
>UniRef100_C0EE25 RNA polymerase sigma factor n=1 Tax=Clostridium methylpentosum DSM
5476 RepID=C0EE25_9CLOT
Length = 372
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
+NG EE+AE + + ++ ++ + P SLE IG D +L F + +
Sbjct: 233 KNGHEASAEEIAEELDMPVDKVREIMRVSQEPVSLETPIGEEEDSHLSDFIPDD-----D 287
Query: 340 S*RTAH*AIH---EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
+ A A H E +G T++ +E K V+R RFG++DGR + L E+G+ V+RER
Sbjct: 288 APAPAEAASHTLLREQLGDVLGTLTEREEK-VLRLRFGLEDGRSRTLEEVGKEFNVTRER 346
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 347 IRQIEAKALR 356
[160][TOP]
>UniRef100_C0CQD9 RNA polymerase sigma factor n=1 Tax=Blautia hydrogenotrophica DSM
10507 RepID=C0CQD9_9FIRM
Length = 374
Score = 57.8 bits (138), Expect = 4e-07
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ +S+ R+ +L + P SLE IG D +L F + N
Sbjct: 235 ELGREPTPEEIAKEMEMSVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 289
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E + + T++ +E K V+R RFG+DDGR + L E+G+ V+RER
Sbjct: 290 VPVPADAAAFTLLKEQLVEVLSTLTDREQK-VLRLRFGLDDGRARTLEEVGKEFNVTRER 348
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 349 IRQIEAKALR 358
[161][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 57.8 bits (138), Expect = 4e-07
Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A + ++R+ +L + P SLE IG D +L F + N
Sbjct: 243 ELGREPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 297
Query: 340 S*RTAH*AIH---EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A +E + + T++ +E K V+R RFGMDDGR + L E+G+ V+RER
Sbjct: 298 VPVPAEAAAQTLLKEQLDEVLDTLTEREQK-VLRLRFGMDDGRARTLEEVGKEFDVTRER 356
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 357 IRQIEAKALR 366
[162][TOP]
>UniRef100_A8SMX7 RNA polymerase sigma factor n=1 Tax=Parvimonas micra ATCC 33270
RepID=A8SMX7_9FIRM
Length = 382
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P +EE++E G+ + +++ + + P SLE IG D +L F + + +
Sbjct: 243 ELGREPTNEEISEHMGIEVDKVNEIRKIAQEPVSLETPIGEEDDSHLGDFIEDETAIAPD 302
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A+ ++ +E + + T+S +E K+V+ RFG++DG + L E+G+ V+RER RQ
Sbjct: 303 E--AANFSMLKEQLNQVLSTLSDRE-KKVLELRFGLNDGTPRTLEEVGKEFEVTRERIRQ 359
Query: 160 IESCAFR*TKEKEEKQ 113
IE+ A R K Q
Sbjct: 360 IEAKALRKLKHPSRSQ 375
[163][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 57.4 bits (137), Expect = 6e-07
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG--IDQNLKSFGSNC*S*G*N 341
E GR P EE+ + +S +++ + + P SLE +G D NL F + +
Sbjct: 177 ELGREPTPEEIGKEMDISPEKVREIQKVSQEPVSLETPVGEESDSNLGDFIEDQ-----D 231
Query: 340 S*RTAH*AIHE---EGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
+ A A E E + + T++ +E + V+R RFG++DGR + L E+G++ GV+RER
Sbjct: 232 ALAPADAAAFELLKEQLEEVLDTLTERE-ENVLRLRFGLEDGRTRTLEEVGQVFGVTRER 290
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 291 IRQIEAKALR 300
[164][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 57.4 bits (137), Expect = 6e-07
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A + ++R+ + + P SLE IG D +L F +
Sbjct: 222 ELGREPTPEEIAHEMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIED--EDAQA 279
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + E + + +++ +E K+V+R RFG+DDGR + L E+G+ GV+RER RQ
Sbjct: 280 PAEAASFMLLREQLEEVLNSLTPRE-KRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQ 338
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 339 IEAKALR 345
[165][TOP]
>UniRef100_C0WBT2 RNA polymerase sigma factor n=1 Tax=Acidaminococcus sp. D21
RepID=C0WBT2_9FIRM
Length = 582
Score = 57.4 bits (137), Expect = 6e-07
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++R+ + + P SLE IG D +L F + +
Sbjct: 442 ELGREPTPEEIAQEMDVPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIED--QEAPS 499
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E +GK ++V+ RFG+ DGR + L E+G+ GV+RER RQ
Sbjct: 500 PAEAASYTLLQEQLGKVLQEHLSPRERRVLELRFGLLDGRTRTLEEVGQYFGVTRERIRQ 559
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 560 IEAKALR 566
[166][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
RepID=B0P3M7_9CLOT
Length = 363
Score = 57.4 bits (137), Expect = 6e-07
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+AE + ++R+ +L + P SLE IG D +L F + N
Sbjct: 224 ELGREPSPEEIAEEMDIPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDE-----N 278
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E + + T++ +E K V+R RFG+DD R + L E+G+ V+RER
Sbjct: 279 VPVPADAAAFTLLKEQLDEVLGTLTEREQK-VLRLRFGLDDSRARTLEEVGKEFNVTRER 337
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 338 IRQIEAKALR 347
[167][TOP]
>UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174
RepID=A5ZYP8_9FIRM
Length = 330
Score = 57.4 bits (137), Expect = 6e-07
Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+AE + + R+ +L + P SLE IG D +L F + N
Sbjct: 191 ELGREPTPEEIAEEMKMPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 245
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E + + T++ +E K V+R RFG+DDGR + L E+G+ V+RER
Sbjct: 246 VPVPADAAAFTLLKEQLIEVLGTLTEREQK-VLRLRFGLDDGRARTLEEVGKEFNVTRER 304
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 305 IRQIEAKALR 314
[168][TOP]
>UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium
caldarium RepID=Q39515_CYACA
Length = 591
Score = 57.4 bits (137), Expect = 6e-07
Identities = 40/125 (32%), Positives = 62/125 (49%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P +EE+ E+ G+ + V+ + SLE + ++ G + + +
Sbjct: 450 ELGRPPSEEEICESVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERAE 509
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
E I K +S +E ++VIR RFG+ DGR + L E+G V+RER RQIE
Sbjct: 510 ENCSRDTLRESIEKVLHCLSTRE-REVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIE 568
Query: 154 SCAFR 140
S A +
Sbjct: 569 SKALK 573
[169][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 57.0 bits (136), Expect = 7e-07
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ +S+ R+ ++ + P SLE IG D +L F + +
Sbjct: 227 ELGREPTPEEIAKEMEISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDALA-P 285
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ A + E+ I + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 286 AEAAAFTMLKEQLINVLD-TLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 343
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 344 IEAKALR 350
[170][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
RepID=C0QRZ3_PERMH
Length = 577
Score = 57.0 bits (136), Expect = 7e-07
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQ--NLKSF--GSNC*S*G 347
E GR P EE+A+ G+ +++ +L T + P SLE IG D +L F S
Sbjct: 437 ELGREPTPEEIAKKVGMPPEKVRKILRTSQEPISLETPIGDDDESHLGDFIEDKTVMSPE 496
Query: 346 *NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERN 167
+ R A EE + T+S +E +QV+R+RFG++D L ++G+ GV+RER
Sbjct: 497 QHVLRQALRQQLEEVLS----TLSERE-EQVLRYRFGLEDDTEYTLEQVGKKFGVTRERI 551
Query: 166 RQIESCAFR 140
RQIE+ A R
Sbjct: 552 RQIEAKALR 560
[171][TOP]
>UniRef100_A8M7Z0 RNA polymerase sigma factor n=1 Tax=Salinispora arenicola CNS-205
RepID=A8M7Z0_SALAI
Length = 328
Score = 57.0 bits (136), Expect = 7e-07
Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQN--LKSFGSNC*S*G*NS* 335
GR P EVA A + ++ ++ + P SL+Q +G D L F + +
Sbjct: 190 GREPTVTEVARALDVPEVQIIELISYDREPVSLDQAVGEDGESPLGDFVAVVNATAAPDN 249
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+ +E +G Q + VIR RFG+DDGR + L E+G G+SRER RQIE
Sbjct: 250 TAERGELRQEV--RGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIE 307
Query: 154 SCAFR*TKEKEEKQAFAA 101
R + E Q AA
Sbjct: 308 KGTLRKLRAPERAQRLAA 325
[172][TOP]
>UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NG03_ROSCS
Length = 541
Score = 57.0 bits (136), Expect = 7e-07
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P DEE++ A G+ + ++ ++ T P SLE +G D L F +
Sbjct: 402 ELGREPTDEELSRALGIPVDKVRSIRKTSLEPVSLETPVGQEEDSQLGDFIEDSKVLA-P 460
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
S +H + E+ N + ++V++ RFG++DG + L E+G+ GV+RER RQ
Sbjct: 461 SDAASHQMLREQVEQVLNQLT--ERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQ 518
Query: 160 IESCAFR 140
IE A R
Sbjct: 519 IEVKALR 525
[173][TOP]
>UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UQ16_ROSS1
Length = 541
Score = 57.0 bits (136), Expect = 7e-07
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P DEE++ A G+ + ++ ++ T P SLE +G D L F +
Sbjct: 402 ELGREPTDEELSRALGIPVDKVRSIRKTSLEPVSLETPVGQEEDSQLGDFIEDSKVLA-P 460
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
S +H + E+ N + ++V++ RFG++DG + L E+G+ GV+RER RQ
Sbjct: 461 SDAASHQMLREQVEQVLNQLT--ERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQ 518
Query: 160 IESCAFR 140
IE A R
Sbjct: 519 IEVKALR 525
[174][TOP]
>UniRef100_C9M9L0 RNA polymerase major sigma factor n=1 Tax=Jonquetella anthropi E3_33
E1 RepID=C9M9L0_9BACT
Length = 969
Score = 56.6 bits (135), Expect = 1e-06
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS*R- 332
GR P DEE+A + +R+ + + P SLE IG +++ G S
Sbjct: 832 GREPSDEEIAAEMKIEPERVEEIKRISQMPVSLETPIGEEED-SQLGDFIEDRSLPSPED 890
Query: 331 TAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIES 152
A + +E I + +S +E ++V+R+RFG++DGR L E+G GV+RER RQIE+
Sbjct: 891 VAADNLLQEQIEEMLNALSDRE-REVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEA 949
Query: 151 CAFR 140
A R
Sbjct: 950 KALR 953
[175][TOP]
>UniRef100_B4WG00 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WG00_9SYNE
Length = 319
Score = 56.6 bits (135), Expect = 1e-06
Identities = 44/125 (35%), Positives = 64/125 (51%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR EVAE L +++ + + P SL +IG +QN + G+ S +
Sbjct: 181 ELGRPATVSEVAEKVSLPAEKVRELQRQSRLPLSLNMRIGSEQNTE-LGALLESDSQSPE 239
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A + + IG+ ++ + K VI RFG+DDG+ K L +IG L +SRER RQIE
Sbjct: 240 EYATQNLLKRDIGQLLARLT-ERQKDVISMRFGLDDGKKKTLAQIGHDLDISRERVRQIE 298
Query: 154 SCAFR 140
A R
Sbjct: 299 RKALR 303
[176][TOP]
>UniRef100_B4D7Q1 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428
RepID=B4D7Q1_9BACT
Length = 296
Score = 56.6 bits (135), Expect = 1e-06
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P D+E+AE GLS ++S + P SL+ I D + + FG G
Sbjct: 143 ELGREPTDDELAEEVGLSSGKISQLKTVSIRPASLDAPISDDDSTE-FGEIV---GDLEA 198
Query: 334 RTAH*AIHEEGIGK--GNWTVSIQET-KQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNR 164
T + ++ + G+ + E K++I RFG+D G+ K L E+G+ GV+RER R
Sbjct: 199 LTPFERLRDKNLRDEVGDLLEVLDEREKKIIFSRFGLDGGKAKTLEEVGKKFGVTRERIR 258
Query: 163 QIESCA---FR*TKEKEEK 116
Q+++ A R +K+EK
Sbjct: 259 QLQNIALMKLRRALQKKEK 277
[177][TOP]
>UniRef100_A8SUG1 RNA polymerase sigma factor n=1 Tax=Coprococcus eutactus ATCC 27759
RepID=A8SUG1_9FIRM
Length = 399
Score = 56.6 bits (135), Expect = 1e-06
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS* 335
GR P EEV E GL +R+ ++ + P SLE IG D +L F + S
Sbjct: 261 GREPLPEEVGEVMGLPKERVQEIMKIAQEPVSLETPIGEEEDSHLGDFIQDE-SIPTPVE 319
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQ-VIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
T +HE+ + ++ E +Q VI+ RFG DDGR + L E+G+ V+RER RQI
Sbjct: 320 ATNQTLLHEQ---LDDVVSTLTEREQRVIKLRFGWDDGRPRTLEEVGKEFNVTRERIRQI 376
Query: 157 ESCAFR 140
E+ A R
Sbjct: 377 EAKALR 382
[178][TOP]
>UniRef100_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa
RepID=Q8S9C9_CYAPA
Length = 431
Score = 56.6 bits (135), Expect = 1e-06
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI---DQNLKSFGSNC*S*G*NS 338
GR P + E+AE GL R+ + + A ++ + I D + G S
Sbjct: 289 GRQPTEAEIAEHVGLDPSRMRKFVESAAAVATVSLDVPINESDNQSATIGDFIRSENEGP 348
Query: 337 *RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQI 158
A + E + + + V+R RFG+DDG K L ++GE LGV+RER RQI
Sbjct: 349 ADRAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQI 408
Query: 157 ESCAFR 140
E A R
Sbjct: 409 EMKALR 414
[179][TOP]
>UniRef100_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa
RepID=Q8S9C8_CYAPA
Length = 427
Score = 56.6 bits (135), Expect = 1e-06
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGID-------QNLKSF-GSN 362
S GR P EE+A+ + + RL+ + P SLE I + NL F S
Sbjct: 276 SRLGRIPTPEELADELNIPVSRLAFITQAASLPISLESPISSETSSTKARNNLGDFIESE 335
Query: 361 C*S*G*NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGV 182
C RT + E + T+ +E + +IR R+G+ DG K L EIGE++G+
Sbjct: 336 CLQPDEQLERT----MLREDLENVLATLKARE-RDIIRMRYGLVDGSPKTLDEIGEIVGL 390
Query: 181 SRERNRQIESCAFR*TKEKEEK 116
+RER RQIE A R K K
Sbjct: 391 TRERIRQIEQSAMRKLKAPYRK 412
[180][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 56.2 bits (134), Expect = 1e-06
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E G P EE+AE +S+ ++ ++ + P SLE IG D +L F +
Sbjct: 225 EYGHDPSAEEIAERLDMSVDKVREIMRVAQEPVSLETPIGEEEDSHLGDFIPD--DDAPV 282
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + T++ +E K V+R RFG++DGR + L E+G+ V+RER RQ
Sbjct: 283 PAEAASQTLLKEQLADVLKTLTPREEK-VLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQ 341
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 342 IEAKALR 348
[181][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2V7P9_SULSY
Length = 590
Score = 56.2 bits (134), Expect = 1e-06
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQ--NLKSFGSNC*S*G*N 341
E GR P EE+A+ G+ ++ +L T + P SLE IG D+ +L F +
Sbjct: 449 ELGREPTPEEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIED------- 501
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQET--------KQVIRWRFGMDDGRMKNLPEIGEMLG 185
+T E+ + K + + E +QV+R+RFG++D L ++G+ G
Sbjct: 502 --KTV--LSPEQHMLKQALRLQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFG 557
Query: 184 VSRERNRQIESCAFR 140
V+RER RQIE+ A R
Sbjct: 558 VTRERIRQIEAKALR 572
[182][TOP]
>UniRef100_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56'
RepID=A9G730_SORC5
Length = 463
Score = 56.2 bits (134), Expect = 1e-06
Identities = 45/141 (31%), Positives = 66/141 (46%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E+ R EEVAE +GLSM++L A+ P L+ +G D +
Sbjct: 324 EHAREAAPEEVAERSGLSMEKLQALREMALPPVYLDAPVGDDDGARQGDFFASEGAAPDE 383
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
H +H + + +++ +E + V+R RFG+D G+ L EIG M VSRER RQIE
Sbjct: 384 LLVHRRLHAQ-VSALLESLTPRE-RDVLRLRFGLDGGQPHTLAEIGGMFSVSRERVRQIE 441
Query: 154 SCAFR*TKEKEEKQAFAAVSG 92
A + +QA G
Sbjct: 442 ESALSKLRTLSRRQALETPLG 462
[183][TOP]
>UniRef100_A8LAI4 RNA polymerase sigma factor n=1 Tax=Frankia sp. EAN1pec
RepID=A8LAI4_FRASN
Length = 400
Score = 56.2 bits (134), Expect = 1e-06
Identities = 41/119 (34%), Positives = 63/119 (52%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS*RT 329
GR P EE+A L+ R+ +L + P +LE IG +Q+ + +
Sbjct: 263 GREPSPEEIATQVDLAPHRVEEILKVGQTPVALETPIGEEQDSQLGDFIEDNDAIVPFEA 322
Query: 328 AH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIES 152
A + +E I T+S +E K+VI+ RFG+ DG+ + L ++G GV+RER RQIES
Sbjct: 323 ASFVLLQEQIDSVLHTLSERE-KKVIQLRFGLTDGQPRTLEQVGREFGVTRERIRQIES 380
[184][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 56.2 bits (134), Expect = 1e-06
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ L +++ +L + P SLE IG D +L F + +
Sbjct: 233 EFGREPKPEEIAKEMDLPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPA-- 290
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A ++ +E + + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 291 PAEAAAFSLLKEQLIEVLDTLTPREQK-VLRLRFGLDDGRARTLEEVGKKFDVTRERIRQ 349
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 350 IEAKALR 356
[185][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 56.2 bits (134), Expect = 1e-06
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++++ ++ + P SLE IG D +L F + + +
Sbjct: 219 ELGREPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPS 278
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 279 E--AAAFTLLKEQLVDVLDTLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 335
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 336 IEAKALR 342
[186][TOP]
>UniRef100_Q4HQG2 RNA polymerase sigma factor n=1 Tax=Campylobacter upsaliensis
RM3195 RepID=Q4HQG2_CAMUP
Length = 619
Score = 56.2 bits (134), Expect = 1e-06
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
+NG+ PD ++A+ GLS+ ++ V+ K P SLE IG +++ K FG
Sbjct: 476 KNGKEPDVNDIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEEDGK-FGDFV-------- 526
Query: 334 RTAH*AIHEEGIGKGNWTVSIQET--------KQVIRWRFGM-DDGRMKNLPEIGEMLGV 182
+ + I K + I E K VIR RFG+ +D + L EIG+ L V
Sbjct: 527 EDKNSLSPMDNILKDDLKEQIDEVLDQLNDREKAVIRMRFGLLEDESDRTLEEIGKELNV 586
Query: 181 SRERNRQIESCAFR 140
+RER RQIES A +
Sbjct: 587 TRERVRQIESSAIK 600
[187][TOP]
>UniRef100_C8W3K2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfotomaculum acetoxidans DSM 771
RepID=C8W3K2_9FIRM
Length = 359
Score = 56.2 bits (134), Expect = 1e-06
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ ++ ++ ++ + P SLE IG D +L F + +
Sbjct: 220 ELGREPMPEEIAKEMNITEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDHDARA-- 277
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + E + T++ +E K V+R RFG+DDGR + L E+G+ GV+RER RQ
Sbjct: 278 PAEEASFTLLREQLDDVLKTLTDREQK-VLRLRFGLDDGRARTLEEVGQKFGVTRERIRQ 336
Query: 160 IESCAFR 140
IE+ R
Sbjct: 337 IEAKTLR 343
[188][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 56.2 bits (134), Expect = 1e-06
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++++ ++ + P SLE IG D +L F + + +
Sbjct: 219 ELGREPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPS 278
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 279 E--AAAFTLLKEQLVDVLDTLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 335
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 336 IEAKALR 342
[189][TOP]
>UniRef100_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiella natans
RepID=Q3LW61_BIGNA
Length = 389
Score = 56.2 bits (134), Expect = 1e-06
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Frame = -1
Query: 505 RXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS*RTA 326
R P +EE++ G+ +K+L +LL+ SL+ I D N SN + +
Sbjct: 251 RYPTEEEISLLIGIPLKKLRKLLLSCNDLISLDSLIENDSN----DSNMLNDSIEDSKVI 306
Query: 325 H*AIH------EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNR 164
+ ++ ++ + K T+S +E+ VIR R+G+DDG + L EIGE L V+RER R
Sbjct: 307 NSEVYAIEKSLKQDLNKALLTLSDRESA-VIRLRYGLDDGNERTLEEIGEYLNVTRERAR 365
Query: 163 QIESCAFR 140
QIE A +
Sbjct: 366 QIEIKALK 373
[190][TOP]
>UniRef100_UPI0001B5772B RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces sp.
C RepID=UPI0001B5772B
Length = 325
Score = 55.8 bits (133), Expect = 2e-06
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
ENGR P+ E+A A + KR+ VL + P SL + D+ FG S
Sbjct: 187 ENGRDPEHAEIAAALDSTEKRVGDVLDWARDPVSLNMSVD-DEGDTQFGDLLEDTSAISP 245
Query: 334 RTAH*AIH-----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
+ ++ E+ +GK + Q T +I+ R+G++DGR + L E+G+ G++RER
Sbjct: 246 EQSVLSLLRSEELEDLLGKLD-----QRTASIIKMRYGIEDGRERTLTEVGKQHGLTRER 300
Query: 169 NRQIESCAFR*TKEKEEKQAFAAVS 95
RQIE A K F AV+
Sbjct: 301 IRQIEKHALLELKRMARDTGFDAVA 325
[191][TOP]
>UniRef100_UPI000185C3FC RNA polymerase sigma factor RpoD n=1 Tax=Corynebacterium amycolatum
SK46 RepID=UPI000185C3FC
Length = 329
Score = 55.8 bits (133), Expect = 2e-06
Identities = 37/118 (31%), Positives = 63/118 (53%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS*RT 329
GR +EE+AE +G+ ++ +L + P SL+ +G D+ S ++
Sbjct: 192 GREATNEELAEESGIPEAKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDSEATDAEEA 251
Query: 328 AH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
++ + K T+ I+E ++VI+ R+G+DDG + L +IG G+SRER RQIE
Sbjct: 252 VVASLRHHDVRKVLSTLEIRE-QEVIKLRYGLDDGLPRTLDQIGRHFGLSRERVRQIE 308
[192][TOP]
>UniRef100_C0EUX7 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
RepID=C0EUX7_9FIRM
Length = 422
Score = 55.8 bits (133), Expect = 2e-06
Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+AEA L ++R+ + + P SLE IG D +L F +
Sbjct: 282 EYGREPTPEEIAEAMNLPVERVLEISKISQEPVSLETPIGEEEDSHLGDFIQDE-HIPVP 340
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ AH + E+ + K T+S +E K V+ RFG++DG+ L E+G V+RER RQ
Sbjct: 341 ADEAAHTLLREQ-LEKVMDTLSEREQK-VLALRFGLEDGKPHTLEEVGREFQVTRERIRQ 398
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 399 IEAKALR 405
[193][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
RepID=C0C397_9CLOT
Length = 370
Score = 55.8 bits (133), Expect = 2e-06
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A + ++R+ +L + P SLE IG D +L F + N
Sbjct: 231 ELGREPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 285
Query: 340 S*RTAH*AIH---EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A +E + + T++ +E K V+R RFGM+DGR + L E+G+ V+RER
Sbjct: 286 VPVPAEAAAQTLLKEQLDEVLDTLTEREQK-VLRLRFGMNDGRARTLEEVGKEFDVTRER 344
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 345 IRQIEAKALR 354
[194][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
43243 RepID=B7AQM8_9BACE
Length = 448
Score = 55.8 bits (133), Expect = 2e-06
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++R+ + + P SLE IG D +L F + N
Sbjct: 309 ELGREPTPEEIAKEMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 363
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A I +E + + T++ +E K V+R RFG+DDGR + L E+G V+RER
Sbjct: 364 VPVPAEEAASTILKEQLVEVLGTLTEREQK-VLRLRFGLDDGRARTLEEVGREFNVTRER 422
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 423 IRQIEAKALR 432
[195][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
RepID=B0NBC7_EUBSP
Length = 371
Score = 55.8 bits (133), Expect = 2e-06
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A + ++R+ +L + P SLE IG D +L F + N
Sbjct: 232 ELGREPTPEEIAAQLDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 286
Query: 340 S*RTAH*AIH---EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A +E + + T++ +E K V+R RFGM+DGR + L E+G+ V+RER
Sbjct: 287 VPVPAEAAAQTLLKEQLDEVLDTLTEREQK-VLRLRFGMNDGRARTLEEVGKEFDVTRER 345
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 346 IRQIEAKALR 355
[196][TOP]
>UniRef100_B0ME78 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662
RepID=B0ME78_9FIRM
Length = 370
Score = 55.8 bits (133), Expect = 2e-06
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+AE + + R+ +L + P SLE IG D +L F + N
Sbjct: 231 ELGREPLPEEIAEEMDIPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 285
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E + + T++ +E K V+R RFG+DD R + L E+G+ V+RER
Sbjct: 286 VPVPADAAAFTLLKEQLSEVLGTLTEREQK-VLRLRFGLDDSRARTLEEVGKEFNVTRER 344
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 345 IRQIEAKALR 354
[197][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
RepID=A6BEL2_9FIRM
Length = 369
Score = 55.8 bits (133), Expect = 2e-06
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A + ++R+ +L + P SLE IG D +L F + N
Sbjct: 230 ELGREPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 284
Query: 340 S*RTAH*AIH---EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A +E + + T++ +E K V+R RFGM+DGR + L E+G+ V+RER
Sbjct: 285 VPVPAEAAAQTLLKEQLDEVLDTLTEREQK-VLRLRFGMNDGRARTLEEVGKEFDVTRER 343
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 344 IRQIEAKALR 353
[198][TOP]
>UniRef100_Q30RJ8 RNA polymerase sigma factor n=1 Tax=Sulfurimonas denitrificans DSM
1251 RepID=Q30RJ8_SULDN
Length = 623
Score = 55.5 bits (132), Expect = 2e-06
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E+G+ PD E +A GLS++++ V+ K P SLE IG + + + FG
Sbjct: 482 EHGKEPDVEVIALEVGLSVEKVKNVIKITKEPISLEAPIGSEDDGR-FGDFIED------ 534
Query: 334 RTAH*AIHEEGIGKGNWTVSIQET--------KQVIRWRFG-MDDGRMKNLPEIGEMLGV 182
+T+ + I K + V I+ K VI+ RFG MDD + L EIG+ L V
Sbjct: 535 KTS--LSPSDAILKDDLRVQIESVLEQLNEREKAVIKLRFGIMDDESDRTLEEIGKELNV 592
Query: 181 SRERNRQIESCAFR 140
+RER RQIES A +
Sbjct: 593 TRERVRQIESSAIK 606
[199][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 55.5 bits (132), Expect = 2e-06
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++++ +L + P SLE IG D +L F + +
Sbjct: 278 EKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALA-P 336
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQET-KQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNR 164
S A+ + E+ + + S+ E K+V++ RFG++DGR + L E+G+ V+RER R
Sbjct: 337 SEAAAYSMLKEQLLEVLD---SLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIR 393
Query: 163 QIESCAFR 140
QIE+ A R
Sbjct: 394 QIEAKALR 401
[200][TOP]
>UniRef100_B2IZW2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IZW2_NOSP7
Length = 332
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/131 (30%), Positives = 69/131 (52%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS*RT 329
GR P ++AE L K++ LL + P SLE ++G D++++ G +
Sbjct: 197 GRTPTAVDIAEELSLDPKQIRDYLLLARQPVSLELRVGSDKDIE-LQDMLEDNGLSPELY 255
Query: 328 AH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIESC 149
A ++ I ++ Q+ +Q++ +RFG+ DG +L EIG+ +G+SRER RQIE
Sbjct: 256 ADHKFLQQNIQNLLSKLNPQQ-RQILTFRFGLTDGNELSLAEIGQRMGISRERVRQIEQQ 314
Query: 148 AFR*TKEKEEK 116
A + ++K
Sbjct: 315 ALGSLRRHKDK 325
[201][TOP]
>UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KI23_CLOPH
Length = 372
Score = 55.5 bits (132), Expect = 2e-06
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EEVA+ + ++R+ + + P SLE IG D +L F + N
Sbjct: 233 ELGREPFPEEVAKEMNIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 287
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E + + T++ +E K V+R RFG+DDGR + L E+G+ V+RER
Sbjct: 288 VPVPAEAAAFTLLKEQLMEVLGTLTDREQK-VLRLRFGLDDGRARTLEEVGKEFNVTRER 346
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 347 IRQIEAKALR 356
[202][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 55.5 bits (132), Expect = 2e-06
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++++ +L + P SLE IG D +L F + +
Sbjct: 272 EKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALA-P 330
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQET-KQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNR 164
S A+ + E+ + + S+ E K+V++ RFG++DGR + L E+G+ V+RER R
Sbjct: 331 SEAAAYSMLKEQLLEVLD---SLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIR 387
Query: 163 QIESCAFR 140
QIE+ A R
Sbjct: 388 QIEAKALR 395
[203][TOP]
>UniRef100_B4CWV6 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428
RepID=B4CWV6_9BACT
Length = 671
Score = 55.5 bits (132), Expect = 2e-06
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*N--S* 335
GR P EEVA+ L ++R+ AVL + P SL+ +G + + SFG G S
Sbjct: 530 GREPTPEEVADEIQLPVERVRAVLKMAQQPISLQSPVG-ESDDTSFGDFIEDKGAENLSD 588
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
TA + E+ K + +QV+ RFG+ DG + L E+G V+RER RQIE
Sbjct: 589 MTAIVLLKEKI--KDVLETLTERERQVLEQRFGLVDGYSRTLEEVGRQFKVTRERIRQIE 646
Query: 154 SCAFR 140
+ A R
Sbjct: 647 AKALR 651
[204][TOP]
>UniRef100_B0VJJ6 RNA polymerase sigma factor n=1 Tax=Candidatus Cloacamonas
acidaminovorans RepID=B0VJJ6_9BACT
Length = 579
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS*-R 332
GR P EE++E + ++++ ++ K P SL++ IG D G S R
Sbjct: 436 GREPYPEEISEVLDIPVEKIKNIMSISKEPVSLDKPIGHDSEDSILGDFIEDRTIISPER 495
Query: 331 TAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIES 152
A ++ ++ + + T++ +E ++VIR RFG+DDG + L E+G + V+RER RQIE
Sbjct: 496 LAERSLLKKQVDEVLKTLTPRE-ERVIRLRFGIDDGYHRTLEEVGNIFQVTRERIRQIED 554
Query: 151 CAFR 140
A +
Sbjct: 555 KALK 558
[205][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7AZ88_RUMGN
Length = 371
Score = 55.5 bits (132), Expect = 2e-06
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++R+ +L + P SLE IG D +L F + N
Sbjct: 232 ELGREPLPEEIAKELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 286
Query: 340 S*RTAH*AIH---EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A +E + + T++ +E K V+R RFGM+DGR + L E+G+ V+RER
Sbjct: 287 VPVPAEAAAQTLLKEQLDEVLDTLTEREQK-VLRLRFGMNDGRARTLEEVGKEFDVTRER 345
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 346 IRQIEAKALR 355
[206][TOP]
>UniRef100_A5TTP9 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
polymorphum ATCC 10953 RepID=A5TTP9_FUSNP
Length = 418
Score = 55.5 bits (132), Expect = 2e-06
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E G+ E +AE G+ ++++ A+ + P SLE +G D L F + + +
Sbjct: 278 ETGKDASPEILAERLGMEVEKIKAIQEMNQEPISLETPVGSEEDSELGDFVEDQKTT--S 335
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ AI E + T+S +E K V+R+R+G+DD K L E+G++ V+RER RQ
Sbjct: 336 PYEATNRAILREELDAVLKTLSPREEK-VLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 394
Query: 160 IESCAFR*TKEKEEKQ 113
IE A R + K+
Sbjct: 395 IEVKALRKLRHPSRKK 410
[207][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KQA4_9FIRM
Length = 383
Score = 55.5 bits (132), Expect = 2e-06
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++R+ +L + P SLE IG D +L F + N
Sbjct: 244 ELGREPLPEEIAKELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 298
Query: 340 S*RTAH*AIH---EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A +E + + T++ +E K V+R RFGM+DGR + L E+G+ V+RER
Sbjct: 299 VPVPAEAAAQTLLKEQLDEVLDTLTEREQK-VLRLRFGMNDGRARTLEEVGKEFDVTRER 357
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 358 IRQIEAKALR 367
[208][TOP]
>UniRef100_A9RTR6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR6_PHYPA
Length = 583
Score = 55.5 bits (132), Expect = 2e-06
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P DEEVA G+S+++L ++ + + P S+++ IG D +S G
Sbjct: 441 ELGRQPRDEEVAAMVGMSVEKLLFIVKSARPPTSMDRPIGKDGE-QSLGE---------- 489
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQ---------------VIRWRFGMDDGRMKNLPEI 200
+ ++G+G + Q KQ V+R RFG+ + L ++
Sbjct: 490 -----MVADKGVGSPEDDIMTQVLKQDIEDVLRSLNPMEREVLRLRFGLSGAQSMTLKDL 544
Query: 199 GEMLGVSRERNRQIESCAFR 140
G + V+RER RQIE+ A R
Sbjct: 545 GIIFKVTRERIRQIEAKALR 564
[209][TOP]
>UniRef100_UPI000174657F RNA polymerase sigma factor n=1 Tax=Verrucomicrobium spinosum DSM
4136 RepID=UPI000174657F
Length = 298
Score = 55.1 bits (131), Expect = 3e-06
Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P D+E++E G+ +LS + + P SL+ I D + + FG G +
Sbjct: 140 ELGREPTDDELSEEIGIDRGKLSQLKVASMRPASLDAPISEDDSTE-FGEIV---GDENA 195
Query: 334 RTAH*AIHEEGIGK---GNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNR 164
+T + + + G TV + +++I RFG++ + + L E+G+ GV+RER R
Sbjct: 196 QTPFDLLSHKNMHSQLDGLLTVLDERERKIIDARFGLNGQKARTLEEVGQEFGVTRERIR 255
Query: 163 QIESCAFR*TKEKEEKQ 113
Q+++ A R + +K+
Sbjct: 256 QLQNIALRKLRRALQKK 272
[210][TOP]
>UniRef100_Q7M846 RNA polymerase sigma factor n=1 Tax=Wolinella succinogenes
RepID=Q7M846_WOLSU
Length = 620
Score = 55.1 bits (131), Expect = 3e-06
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLK--SFGSNC*S*G*N 341
E G+ PD E ++E GL + ++ V+ K P SLE IG D++ K F + S G
Sbjct: 479 EEGKEPDVETISEEVGLPVDKVKNVIKITKEPISLEAPIGSDEDGKFGDFVEDKSSVG-- 536
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQET--------KQVIRWRFGM-DDGRMKNLPEIGEML 188
+ I K + I E K VIR RFG+ +D + L EIG+ L
Sbjct: 537 ---------PMDHILKEDLKTQIDEVLDQLNEREKAVIRMRFGLLEDESDRTLEEIGKEL 587
Query: 187 GVSRERNRQIESCAFR 140
V+RER RQIES A +
Sbjct: 588 NVTRERVRQIESSAIK 603
[211][TOP]
>UniRef100_C3WID8 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 2_1_31
RepID=C3WID8_9FUSO
Length = 269
Score = 55.1 bits (131), Expect = 3e-06
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E G+ E +AE G+ ++++ A+ + P SLE +G D L F + + +
Sbjct: 129 ETGKDASPEILAERLGMEVEKIKAIQEMNQEPISLETPVGSEEDSELGDFVEDQKTT--S 186
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ AI E + T+S +E K V+R+R+G+DD K L E+G++ V+RER RQ
Sbjct: 187 PYEATNRAILREELDGVLKTLSPREEK-VLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 245
Query: 160 IESCAFR*TKEKEEKQ 113
IE A R + K+
Sbjct: 246 IEVKALRKLRHPSRKK 261
[212][TOP]
>UniRef100_C2CP37 RNA polymerase sigma factor n=1 Tax=Corynebacterium striatum ATCC
6940 RepID=C2CP37_CORST
Length = 337
Score = 55.1 bits (131), Expect = 3e-06
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQN--LKSFGSNC*S*G*NS* 335
GR +EE+AE +G+ ++ +L + P SL+ +G D+ L F + +
Sbjct: 200 GREATNEELAEESGIEESKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEA---TDA 256
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
TA A +G + + VIR R+G+DDG + L +IG G+SRER RQIE
Sbjct: 257 ETAVVAAMRHSDIRGVIETLEEREQDVIRLRYGLDDGVPRTLDQIGRKFGLSRERVRQIE 316
[213][TOP]
>UniRef100_C0BBA6 RNA polymerase sigma factor n=1 Tax=Coprococcus comes ATCC 27758
RepID=C0BBA6_9FIRM
Length = 371
Score = 55.1 bits (131), Expect = 3e-06
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A + + R+ +L + P SLE IG D +L F + N
Sbjct: 232 ELGREPTPEEIAAELDMPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 286
Query: 340 S*RTAH*AIH---EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A +E + + T++ +E K V+R RFGM DGR + L E+G+ V+RER
Sbjct: 287 VPVPAEAAAQTLLKEQLDEVLSTLTEREQK-VLRLRFGMSDGRARTLEEVGKEFDVTRER 345
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 346 IRQIEAKALR 355
[214][TOP]
>UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CM66_9FIRM
Length = 372
Score = 55.1 bits (131), Expect = 3e-06
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++R+ +L + P SLE IG D +L F + N
Sbjct: 233 ELGREPLPEEIAKEMDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDD-----N 287
Query: 340 S*RTAH*AIH---EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A +E + + T++ +E K V+R RFGM+DGR + L E+G V+RER
Sbjct: 288 VPVPAEAAAQTLLKEQLDEVLDTLTEREQK-VLRLRFGMNDGRARTLEEVGREFDVTRER 346
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 347 IRQIEAKALR 356
[215][TOP]
>UniRef100_B8C130 RNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8C130_THAPS
Length = 318
Score = 55.1 bits (131), Expect = 3e-06
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Frame = -1
Query: 517 SENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFG--SNC*S*G* 344
+E GR EEVA G+ ++ + S+EQ++G + +SF
Sbjct: 174 NELGRDATKEEVAAKVGMKPDKIEFLKRASVGSISMEQELGTSGSERSFTIQDTLGDPDQ 233
Query: 343 NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNR 164
A + ++ +G+ T++ +E + VIR RFG+DDG+ K L EIG+ V+RER R
Sbjct: 234 KPVDMAQYRMLQDDVGRLICTLNARE-QAVIRMRFGLDDGKAKTLEEIGKKFSVTRERIR 292
Query: 163 QIESCA 146
QIE+ A
Sbjct: 293 QIEARA 298
[216][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 55.1 bits (131), Expect = 3e-06
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + + ++ ++ + P SLE IG D +L F + +
Sbjct: 239 ELGREPQPEEIAKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPA 298
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + K T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 299 D--AAAFRMLKEQLLKILNTLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 355
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 356 IEAKALR 362
[217][TOP]
>UniRef100_UPI0001B4FAF4 RNA polymerase sigma factor n=1 Tax=Streptomyces hygroscopicus ATCC
53653 RepID=UPI0001B4FAF4
Length = 333
Score = 54.7 bits (130), Expect = 4e-06
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E+GR P+ E+AE G + +R+S VL + P SL + D+ FG S
Sbjct: 195 EHGREPEHMEIAEELGSTPERVSDVLDWARDPVSLNMSVD-DEGETQFGDLLEDTSAVSP 253
Query: 334 RTAH*AIH-----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
+ + E+ IG+ + T +I+ R+G+DDGR + L E+G+ G++RER
Sbjct: 254 EQSVMTLLRSEELEDLIGRLD-----DRTASIIKARYGIDDGRERTLTEVGKQHGLTRER 308
Query: 169 NRQIESCAFR*TKEKEEKQAFAAVS 95
RQIE A K+ + F A +
Sbjct: 309 IRQIEKHALLELKKMARQTGFDAAA 333
[218][TOP]
>UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
nucleatum RepID=Q8RE13_FUSNN
Length = 331
Score = 54.7 bits (130), Expect = 4e-06
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E G+ E +AE G+ + ++ A+ + P SLE +G D L F + + +
Sbjct: 191 ETGKDASPEILAERLGMEVDKIKAIQEMNQEPISLETPVGSEEDSELGDFVEDQKTT--S 248
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ AI E + T+S +E K V+R+R+G+DD K L E+G++ V+RER RQ
Sbjct: 249 PYEATNRAILREELDAVLKTLSPREEK-VLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 307
Query: 160 IESCAFR*TKEKEEKQ 113
IE A R + K+
Sbjct: 308 IEVKALRKLRHPSRKK 323
[219][TOP]
>UniRef100_Q7UPN4 RNA polymerase sigma factor n=1 Tax=Rhodopirellula baltica
RepID=Q7UPN4_RHOBA
Length = 568
Score = 54.7 bits (130), Expect = 4e-06
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E+GR P EEV++ +GLS+ +L + P SL+Q +G D + FG +
Sbjct: 416 EHGREPTAEEVSKRSGLSLDDTRVILKMSRQPLSLDQPVG-DHDDSVFGEFLQDHRDDDP 474
Query: 334 --RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
T A+ + I T++ +E ++++R R+G+ DG L E+G + V+RER RQ
Sbjct: 475 LVETNREALKHQ-IDLAMETLNYRE-REILRLRYGLADGYTYTLEEVGRIFQVTRERVRQ 532
Query: 160 IESCAFR 140
IES A R
Sbjct: 533 IESKAVR 539
[220][TOP]
>UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656
RepID=C4ZEX0_EUBR3
Length = 434
Score = 54.7 bits (130), Expect = 4e-06
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++R+ +L + P SLE IG D +L F + N
Sbjct: 295 ELGREPSPEEIAKEMNMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIKDD-----N 349
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E + + T++ +E K V+ RFG++DGR + L E+G+ V+RER
Sbjct: 350 VPVPADAAAFTLLKEQLEEVLGTLTEREQK-VLTLRFGLEDGRARTLEEVGKEFNVTRER 408
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 409 IRQIEAKALR 418
[221][TOP]
>UniRef100_A6Q2X9 RNA polymerase sigma factor n=1 Tax=Nitratiruptor sp. SB155-2
RepID=A6Q2X9_NITSB
Length = 608
Score = 54.7 bits (130), Expect = 4e-06
Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E G+ PD E +AE G+ ++++ V+ K P SLE IG +++ K FG
Sbjct: 467 ETGKEPDVETIAEEVGMPVEKVKNVIKITKEPVSLEAPIGNEEDGK-FGDFIED------ 519
Query: 334 RTAH*AIHEEGIGKGNWTVSIQET--------KQVIRWRFG-MDDGRMKNLPEIGEMLGV 182
+ A + E I K + I+E K V+R RFG M D + L EIG+ L V
Sbjct: 520 KNAPNPL--EVIMKEDMKSKIEEILENLNEREKAVVRMRFGLMPDESDRTLEEIGKELNV 577
Query: 181 SRERNRQIESCAFR 140
+RER RQIES A +
Sbjct: 578 TRERVRQIESSAIK 591
[222][TOP]
>UniRef100_A2C455 RNA polymerase sigma factor n=2 Tax=Prochlorococcus marinus
RepID=A2C455_PROM1
Length = 313
Score = 54.7 bits (130), Expect = 4e-06
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSN-C*S*G*NS*R 332
G P E+AEA + ++ L ++L SL+ + D+ G G
Sbjct: 178 GAMPSRIEIAEAMEIELEELDSILRQALTTSSLDAPVNGDEGRSFLGDLIADGSGEEPLD 237
Query: 331 TAH*AIHEEGIGKGNWTVSIQETKQ-VIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
IH+E +G+ W + E +Q VIR RFG++ L EIG +L VSRER RQ+E
Sbjct: 238 KVEQKIHQEQLGR--WLSHLSEQEQHVIRLRFGLEGNERHTLAEIGRLLQVSRERVRQVE 295
Query: 154 SCAFR 140
A R
Sbjct: 296 LKALR 300
[223][TOP]
>UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33
RepID=D0BQ42_9FUSO
Length = 416
Score = 54.7 bits (130), Expect = 4e-06
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E G+ E +AE G+ + ++ A+ + P SLE +G D L F + + +
Sbjct: 276 ETGKDASPEILAERLGMEVDKIKAIQEMNQEPISLETPVGSEEDSELGDFVEDQKTT--S 333
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ AI E + T+S +E K V+R+R+G+DD K L E+G++ V+RER RQ
Sbjct: 334 PYEATNRAILREELDAVLKTLSPREEK-VLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 392
Query: 160 IESCAFR*TKEKEEKQ 113
IE A R + K+
Sbjct: 393 IEVKALRKLRHPSRKK 408
[224][TOP]
>UniRef100_C8R064 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT
Length = 555
Score = 54.7 bits (130), Expect = 4e-06
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
++GR P EE+AE G+ + ++ ++L K P SL+ +G D L F + S +
Sbjct: 414 QHGREPTPEEMAEHLGVDIAKVKSILKIAKEPLSLDTPVGSGEDSFLSDFIEDADSTSPD 473
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
T + ++ ++ + + T++ +E + V+R RFG+D L E+GE V+RER RQ
Sbjct: 474 E-ATIYDSL-QDNLARVLKTLTPRE-EMVLRLRFGIDTATDLTLEEVGENFSVTRERIRQ 530
Query: 160 IESCAFR*TKEKEEK 116
IE+ A + K K
Sbjct: 531 IEAKALKKLKHPTRK 545
[225][TOP]
>UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2
RepID=C7XNV3_9FUSO
Length = 418
Score = 54.7 bits (130), Expect = 4e-06
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E G+ E +AE G+ + ++ A+ + P SLE +G D L F + + +
Sbjct: 278 ETGKDASPEILAERLGMEVDKIKAIQEMNQEPISLETPVGSEEDSELGDFVEDQKTT--S 335
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ AI E + T+S +E K V+R+R+G+DD K L E+G++ V+RER RQ
Sbjct: 336 PYEATNRAILREELDAVLKTLSPREEK-VLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 394
Query: 160 IESCAFR*TKEKEEKQ 113
IE A R + K+
Sbjct: 395 IEVKALRKLRHPSRKK 410
[226][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 54.7 bits (130), Expect = 4e-06
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EEVA+ + + ++ ++ + P SLE IG D +L F + +
Sbjct: 222 ELGREPQPEEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPA-P 280
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ A + E+ I + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 281 AEAAAFTMLKEQLINVLD-TLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 338
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 339 IEAKALR 345
[227][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EU48_9BACT
Length = 387
Score = 54.7 bits (130), Expect = 4e-06
Identities = 40/123 (32%), Positives = 65/123 (52%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS*RT 329
GR P EE+A+ G+++ R+ + + P SLE IG +++ + +
Sbjct: 250 GREPSAEEIAQEMGVTVDRVEEIQKIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPDEA 309
Query: 328 AH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIESC 149
A I E + + ++ +E K+V+R RFG++DG L E+G GV+RER RQIE+
Sbjct: 310 AANQILREQLEEMLEDLTDRE-KEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAK 368
Query: 148 AFR 140
A R
Sbjct: 369 ALR 371
[228][TOP]
>UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1
RepID=C3WX07_9FUSO
Length = 417
Score = 54.7 bits (130), Expect = 4e-06
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E G+ E +AE G+ + ++ A+ + P SLE +G D L F + + +
Sbjct: 277 ETGKDASPEILAERLGMEVDKIKAIQEMNQEPISLETPVGSEEDSELGDFVEDQKTT--S 334
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ AI E + T+S +E K V+R+R+G+DD K L E+G++ V+RER RQ
Sbjct: 335 PYEATNRAILREELDAVLKTLSPREEK-VLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 393
Query: 160 IESCAFR*TKEKEEKQ 113
IE A R + K+
Sbjct: 394 IEVKALRKLRHPSRKK 409
[229][TOP]
>UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium
RepID=C3WPP3_9FUSO
Length = 340
Score = 54.7 bits (130), Expect = 4e-06
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E G+ E +AE G+ + ++ A+ + P SLE +G D L F + + +
Sbjct: 200 ETGKDASPEILAERLGMEVDKIKAIQEMNQEPISLETPVGSEEDSELGDFVEDQKTT--S 257
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ AI E + T+S +E K V+R+R+G+DD K L E+G++ V+RER RQ
Sbjct: 258 PYEATNRAILREELDAVLKTLSPREEK-VLRYRYGLDDSSPKTLEEVGKIFNVTRERIRQ 316
Query: 160 IESCAFR*TKEKEEKQ 113
IE A R + K+
Sbjct: 317 IEVKALRKLRHPSRKK 332
[230][TOP]
>UniRef100_C3WBM9 RNA polymerase sigma factor n=1 Tax=Fusobacterium mortiferum ATCC
9817 RepID=C3WBM9_FUSMR
Length = 273
Score = 54.7 bits (130), Expect = 4e-06
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E G P EE++E ++ +++ +++ + P SL IG D L+ +N NS
Sbjct: 138 EEGIYPTVEEISEDLNVNKEKIEEIMVAFQDPMSLSASIGDDIQLEDIIAN------NSE 191
Query: 334 RTAH*AIHEE-GIGKGNWTVSI--QETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNR 164
+ I EE G + V + + KQ+++ RFG+D + L EIG+ ++RER R
Sbjct: 192 TSIEDDIIEEMGREQVRQIVKVLDEREKQILKLRFGLDGEEIHTLEEIGQTFNITRERVR 251
Query: 163 QIESCAFR*TKEKEEK 116
QIE + K + EK
Sbjct: 252 QIEKKTLKKLKMQCEK 267
[231][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
RepID=A5I618_CLOBH
Length = 361
Score = 54.7 bits (130), Expect = 4e-06
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EEVA+ + + ++ ++ + P SLE IG D +L F + +
Sbjct: 222 ELGREPQPEEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPA-P 280
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ A + E+ I + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 281 AEAAAFTMLKEQLINVLD-TLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 338
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 339 IEAKALR 345
[232][TOP]
>UniRef100_A7VCB7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. L2-50
RepID=A7VCB7_9CLOT
Length = 377
Score = 54.7 bits (130), Expect = 4e-06
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + ++R+ +L + P SLE IG D +L F + N
Sbjct: 238 ELGREPQPEEIADVMDIPVERVREILKISQEPVSLETPIGEEEDSHLGDFIPDD-----N 292
Query: 340 S*RTAH*A---IHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
A A + +E + + T++ +E K+V+ RFG++DGR + L E+G+ V+RER
Sbjct: 293 MPVPADAAAFTLLKEQLVEVLDTLTERE-KKVLTLRFGLEDGRARTLEEVGKEFNVTRER 351
Query: 169 NRQIESCAFR 140
RQIE+ A R
Sbjct: 352 IRQIEAKALR 361
[233][TOP]
>UniRef100_A3ZNG6 RNA polymerase sigma factor n=1 Tax=Blastopirellula marina DSM 3645
RepID=A3ZNG6_9PLAN
Length = 507
Score = 54.7 bits (130), Expect = 4e-06
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E GR P EEVAE GLS+ +L + P SL+Q +G D + FG +
Sbjct: 355 ELGRDPTAEEVAERAGLSIDDARVILKMNRNPLSLDQPVG-DHDDSFFGEFLED---HRD 410
Query: 334 RTAH*AIHEEGIGKGNWTVSI---QETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNR 164
H++ + V +++IR R+G+ DG L E+G++ V+RER R
Sbjct: 411 EDPLYETHQQALKDRLCEVLEALNHREREIIRLRYGLTDGYSYTLEEVGKIFSVTRERVR 470
Query: 163 QIESCAFR*TKEKEEKQAFAA 101
QIES A R ++ + A+
Sbjct: 471 QIESKAVRKLQQPYRSRGLAS 491
[234][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NKZ2_GLOVI
Length = 350
Score = 54.3 bits (129), Expect = 5e-06
Identities = 38/132 (28%), Positives = 69/132 (52%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS*RT 329
GR P ++E+A+A + +L V + P SLE +G +++ + G + G
Sbjct: 209 GRSPSEDEIAQAVEMDADQLRFVRKAIQLPVSLETPVGREEDT-ALGDLIQAKGNEPEHG 267
Query: 328 AH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIESC 149
+ + + T++ +E + V+R R+G+ DGR + L E+G+ G++RER RQIE+
Sbjct: 268 VVRDLMNQDLESLLQTLTPRE-RDVLRLRYGLIDGRSRTLDEVGQQFGLTRERIRQIEAR 326
Query: 148 AFR*TKEKEEKQ 113
A R + + Q
Sbjct: 327 ALRKLRHPQRLQ 338
[235][TOP]
>UniRef100_Q660G1 RNA polymerase sigma factor n=1 Tax=Borrelia garinii
RepID=Q660G1_BORGA
Length = 631
Score = 54.3 bits (129), Expect = 5e-06
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQN--LKSFGSNC*S*G*NS* 335
G+ P DEE+++ G +K++ V + P SLE IG +++ L F +
Sbjct: 491 GKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDK-------- 542
Query: 334 RTAH*AIHEEGIGKGNWTVSIQET-----KQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
+ A H + + SI T ++V++ RFG++DG L E+G V+RER
Sbjct: 543 AIKNPANHTSFVVLQDQIRSILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRER 602
Query: 169 NRQIESCAFR*TKEKEEKQ 113
RQIES A R K ++ Q
Sbjct: 603 IRQIESKALRRLKNPKKTQ 621
[236][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 54.3 bits (129), Expect = 5e-06
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + + ++ ++ + P SLE IG D +L F + +
Sbjct: 229 ELGREPQPEEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPA-P 287
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ A + E+ I + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 288 AEAAAFTMLKEQLINVLD-TLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 345
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 346 IEAKALR 352
[237][TOP]
>UniRef100_Q1NXM5 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1
RepID=Q1NXM5_9DELT
Length = 442
Score = 54.3 bits (129), Expect = 5e-06
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQN-LKSFGSNC*S*G*NS 338
E GR P E++E TGL M+++ A+ + P SLE +G D + L F N S
Sbjct: 304 ELGREPTPVEISEKTGLPMEKILAIFEASREPISLETPVGDDDSTLGDFLENQES----- 358
Query: 337 *RTAH*AIHEEGIGKGNW----------TVSIQETKQVIRWRFGMDDGRMKNLPEIGEML 188
I KGN T+S +E K +IR RFG+ + L EIG+
Sbjct: 359 -------ISPYEAVKGNQLAERVTTILSTLSPREEK-IIRLRFGIGEDAEYTLEEIGKRF 410
Query: 187 GVSRERNRQIESCAFR*TKEKEEKQ 113
VSRER RQIE A + ++
Sbjct: 411 NVSRERIRQIEKKALNRLRHSSRRE 435
[238][TOP]
>UniRef100_C8R003 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R003_9DELT
Length = 445
Score = 54.3 bits (129), Expect = 5e-06
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQN-LKSFGSNC*S*G*NS 338
E GR P E++E TGL M+++ A+ + P SLE +G D + L F N
Sbjct: 307 ELGREPTPAEISEKTGLPMEKILAIFEASREPISLETPVGDDDSTLGDFLEN-------- 358
Query: 337 *RTAH*AIHEEGIGKGNW----------TVSIQETKQVIRWRFGMDDGRMKNLPEIGEML 188
++ KGN T+S +E K +IR RFG+ + L EIG+
Sbjct: 359 ----QESVSPYEAVKGNQLAERVTTILSTLSPREEK-IIRLRFGIGEDAEYTLEEIGKRF 413
Query: 187 GVSRERNRQIESCAFR*TKEKEEKQ 113
VSRER RQIE A + ++
Sbjct: 414 NVSRERIRQIEKKALNRLRHSSRRE 438
[239][TOP]
>UniRef100_C7HUH1 RNA polymerase sigma factor RpoD n=1 Tax=Anaerococcus vaginalis
ATCC 51170 RepID=C7HUH1_9FIRM
Length = 614
Score = 54.3 bits (129), Expect = 5e-06
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS* 335
GR P +EE+AE G+ ++++ + + P SLE IG D +L F + N
Sbjct: 478 GRDPSNEEIAEQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDSHLGDFIED--DTAINPD 535
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A+ ++ + + + +E K+V++ RFG+ DG + L E+G+ V+RER RQIE
Sbjct: 536 DAANYSMLRDQLNDVLSCLGARE-KRVLQLRFGLIDGTPRTLEEVGKEFDVTRERIRQIE 594
Query: 154 SCAFR*TKEKEEKQ 113
+ A R K + +
Sbjct: 595 AKALRKLKSPNKSE 608
[240][TOP]
>UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium
thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS
Length = 357
Score = 54.3 bits (129), Expect = 5e-06
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ +S+ ++ ++ + P SLE IG D +L F + +
Sbjct: 218 ELGRDPLPEEIAKEMDMSVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPA-P 276
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ A + E+ I + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 277 AEAAAFTMLKEQLIDVLD-TLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 334
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 335 IEAKALR 341
[241][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 54.3 bits (129), Expect = 5e-06
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + + ++ ++ + P SLE IG D +L F + +
Sbjct: 229 ELGREPQPEEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPA-P 287
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ A + E+ I + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 288 AEAAAFTMLKEQLINVLD-TLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 345
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 346 IEAKALR 352
[242][TOP]
>UniRef100_C4FHX0 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium
yellowstonense SS-5 RepID=C4FHX0_9AQUI
Length = 570
Score = 54.3 bits (129), Expect = 5e-06
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQ--NLKSF--GSNC*S*G 347
E GR P EE+A+ G+ ++ +L T + P SLE IG D+ +L F + S
Sbjct: 449 ELGREPTPEEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKSVLSPE 508
Query: 346 *NS*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERN 167
+ + A +E + T+S +E +QV+R+RFG++D L ++G+ GV+RER
Sbjct: 509 QHMLKQALRLQLDEVLS----TLSERE-EQVLRYRFGLEDDTEHTLEQVGKRFGVTRERI 563
Query: 166 RQIESCA 146
RQIE+ A
Sbjct: 564 RQIEAKA 570
[243][TOP]
>UniRef100_B7XV46 RNA polymerase sigma factor n=1 Tax=Borrelia garinii Far04
RepID=B7XV46_BORGA
Length = 631
Score = 54.3 bits (129), Expect = 5e-06
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQN--LKSFGSNC*S*G*NS* 335
G+ P DEE+++ G +K++ V + P SLE IG +++ L F +
Sbjct: 491 GKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDK-------- 542
Query: 334 RTAH*AIHEEGIGKGNWTVSIQET-----KQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
+ A H + + SI T ++V++ RFG++DG L E+G V+RER
Sbjct: 543 AIKNPANHTSFVVLQDQIRSILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRER 602
Query: 169 NRQIESCAFR*TKEKEEKQ 113
RQIES A R K ++ Q
Sbjct: 603 IRQIESKALRRLKNPKKTQ 621
[244][TOP]
>UniRef100_B7XSA0 RNA polymerase sigma factor n=1 Tax=Borrelia garinii PBr
RepID=B7XSA0_BORGA
Length = 631
Score = 54.3 bits (129), Expect = 5e-06
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQN--LKSFGSNC*S*G*NS* 335
G+ P DEE+++ G +K++ V + P SLE IG +++ L F +
Sbjct: 491 GKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDK-------- 542
Query: 334 RTAH*AIHEEGIGKGNWTVSIQET-----KQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
+ A H + + SI T ++V++ RFG++DG L E+G V+RER
Sbjct: 543 AIKNPANHTSFVVLQDQIRSILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRER 602
Query: 169 NRQIESCAFR*TKEKEEKQ 113
RQIES A R K ++ Q
Sbjct: 603 IRQIESKALRRLKNPKKTQ 621
[245][TOP]
>UniRef100_B6WAP8 RNA polymerase sigma factor n=1 Tax=Anaerococcus hydrogenalis DSM
7454 RepID=B6WAP8_9FIRM
Length = 617
Score = 54.3 bits (129), Expect = 5e-06
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*NS* 335
GR P +EE+AE G+ ++++ + + P SLE IG D +L F + N
Sbjct: 481 GRDPSNEEIAEQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDSHLGDFIED--DTAINPD 538
Query: 334 RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
A+ ++ + + + +E K+V++ RFG+ DG + L E+G+ V+RER RQIE
Sbjct: 539 DAANYSMLRDQLNDVLSCLGARE-KRVLQLRFGLIDGTPRTLEEVGKEFDVTRERIRQIE 597
Query: 154 SCAFR*TKEKEEKQ 113
+ A R K + +
Sbjct: 598 AKALRKLKSPNKSE 611
[246][TOP]
>UniRef100_B4VDF5 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1
RepID=B4VDF5_9ACTO
Length = 325
Score = 54.3 bits (129), Expect = 5e-06
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSNC*S*G*NS* 335
E+GR P+ E+A + KR+ VL + P SL + D + + FG S
Sbjct: 187 EHGRDPEHTEIAAELDTTAKRVGDVLDWARDPVSLNMSVDDDGDTQ-FGDLLEDTSAISP 245
Query: 334 RTAH*AIH-----EEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRER 170
+ ++ E+ +GK + Q T +I+ R+G+DDGR + L E+G+ G++RER
Sbjct: 246 EQSVLSLLRSEELEDLLGKLD-----QRTASIIKMRYGIDDGRERTLTEVGKQHGLTRER 300
Query: 169 NRQIESCAFR*TKEKEEKQAFAAVS 95
RQIE A K+ F AV+
Sbjct: 301 IRQIEKHALLELKKMARDTGFDAVA 325
[247][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 54.3 bits (129), Expect = 5e-06
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EE+A+ + + ++ ++ + P SLE IG D +L F + +
Sbjct: 229 ELGREPQPEEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPA-P 287
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ A + E+ I + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 288 AEAAAFTMLKEQLINVLD-TLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 345
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 346 IEAKALR 352
[248][TOP]
>UniRef100_A6NVX3 RNA polymerase sigma factor n=1 Tax=Bacteroides capillosus ATCC
29799 RepID=A6NVX3_9BACE
Length = 441
Score = 54.3 bits (129), Expect = 5e-06
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E G P EE+AE + + ++ +L + P SLE IG D +L F +
Sbjct: 302 ELGHDPSPEEIAEEMNMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD--EDASE 359
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
A + +E + T++ +E K V++ RFG++DGR + L E+G+ V+RER RQ
Sbjct: 360 PSEAASFTLLKEQLVDVLGTLTPREEK-VLKLRFGIEDGRTRTLEEVGKEFNVTRERIRQ 418
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 419 IEAKALR 425
[249][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
RepID=A5N6R2_CLOK5
Length = 354
Score = 53.9 bits (128), Expect = 6e-06
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 514 ENGRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI--DQNLKSFGSNC*S*G*N 341
E GR P EEVA+ + + ++ ++ + P SLE IG D +L F + +
Sbjct: 215 ELGREPHAEEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPA-P 273
Query: 340 S*RTAH*AIHEEGIGKGNWTVSIQETKQVIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQ 161
+ A + E+ I + T++ +E K V+R RFG+DDGR + L E+G+ V+RER RQ
Sbjct: 274 AEAAAFTMLKEQLINVLD-TLTPREEK-VLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 331
Query: 160 IESCAFR 140
IE+ A R
Sbjct: 332 IEAKALR 338
[250][TOP]
>UniRef100_A2BXZ6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BXZ6_PROM5
Length = 313
Score = 53.9 bits (128), Expect = 6e-06
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Frame = -1
Query: 508 GRXPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKSFGSN-C*S*G*NS*R 332
G P E+AEA + ++ L +VL + SL+ + D G S
Sbjct: 178 GAMPSRIEIAEAMEIDVEELDSVLRQALSTSSLDAPVNGDDGRSFLGDLIADSNNEEPLD 237
Query: 331 TAH*AIHEEGIGKGNWTVSIQETKQ-VIRWRFGMDDGRMKNLPEIGEMLGVSRERNRQIE 155
+H+E +GK W + E +Q V++ RFG+D L EIG +L VSRER RQ+E
Sbjct: 238 QVEQKMHQEQLGK--WLTHLSEQEQHVLKLRFGLDGNERHTLAEIGRLLEVSRERVRQVE 295
Query: 154 SCAFR 140
A R
Sbjct: 296 LKALR 300