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[1][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 342 bits (876), Expect = 1e-92
Identities = 169/175 (96%), Positives = 171/175 (97%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVLKSNLYGIRDASICFKGPGYVTAQN+ILPPSVVIVDNTQHIANVTEPIQLCIG
Sbjct: 89 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIANVTEPIQLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIERDRGYRI TL NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEALYEASRNLIDLFIPFLHAEEEKLNFE +EHKVTLPL TCHDLLAKTKLK
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 263
[2][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 307 bits (786), Expect = 3e-82
Identities = 152/175 (86%), Positives = 159/175 (90%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVLKSNLYG RDASICFKGPGYVTAQ++ILPPSV IVDNTQHIAN+TEPI LCI
Sbjct: 89 MNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER RGYRI TL N QDGSY IDA+FMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEALYEASRNLIDLFIPFLHAEEE LNFE ++HKVTLPL T HD L K KL+
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLLKDKLR 263
[3][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 302 bits (774), Expect = 8e-81
Identities = 148/175 (84%), Positives = 159/175 (90%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASICFKGPGYVTAQ++ILPPSV IVDNTQHIANVTEP+ LCI
Sbjct: 89 MNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANVTEPVNLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGYRI TL NFQDGSY IDA FMPVRN NHSIHSYVNGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEALYEASRNLIDLFIPFLHAEE+ N E ++HKVTLPL T HD+LAK KL+
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLPLFTFHDILAKEKLR 263
[4][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 302 bits (774), Expect = 8e-81
Identities = 148/175 (84%), Positives = 159/175 (90%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASICFKGPGYVTAQ++ILPPSV IVDNTQHIANVTEP+ LCI
Sbjct: 89 MNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANVTEPVNLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGYRI TL NFQDGSY IDA FMPVRN NHSIHSYVNGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEALYEASRNLIDLFIPFLHAEE+ N E ++HKVTLPL T HD+LAK KL+
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLPLFTFHDILAKEKLR 263
[5][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 290 bits (741), Expect = 6e-77
Identities = 142/175 (81%), Positives = 156/175 (89%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVLKSN+YG +DASI FKGPGY+TAQ++ILPPSV IVDN QHIANVTEP+ LCI
Sbjct: 89 MNLKEIVLKSNMYGTQDASISFKGPGYITAQDIILPPSVEIVDNRQHIANVTEPVNLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGYRI TL NFQDGSY+IDA FMPVRN N+SIHSYVNGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEALYEAS+NLIDLFIPFLHAEEE N E +HKVTLPL T HD+L K KL+
Sbjct: 209 LTPKEALYEASQNLIDLFIPFLHAEEENFNLEKKKHKVTLPLFTFHDILVKDKLR 263
[6][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 288 bits (737), Expect = 2e-76
Identities = 140/175 (80%), Positives = 158/175 (90%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVLKSN+YGI+DASI FKGPGY+TAQ++ILPPSV IVDN QHIANVTEP+ LCI
Sbjct: 89 MNLKEIVLKSNMYGIQDASISFKGPGYITAQDIILPPSVEIVDNRQHIANVTEPVHLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGYRI TL NFQDGSY+IDA FMPVRN N+SIHSYVNGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEALYEAS+NLI+LFIPFLHAEE+ + E ++HKVTLPL T HD+L K KL+
Sbjct: 209 LTPKEALYEASQNLIELFIPFLHAEEDNFHLEKNQHKVTLPLFTFHDILVKDKLR 263
[7][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 288 bits (736), Expect = 2e-76
Identities = 141/167 (84%), Positives = 153/167 (91%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG R+ASICFKGPGYVTAQ++ILP SV ++DNTQHIAN+TEPI LCI
Sbjct: 89 MNLKEIVLRSNLYGTREASICFKGPGYVTAQDIILP-SVEVIDNTQHIANLTEPINLCIE 147
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER RGYRI TL N QDGSY IDA+FMPVRNANHSIHSYVNGN+KQEILFLEIWTNGS
Sbjct: 148 LQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNQKQEILFLEIWTNGS 207
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHD 25
LTPKEALYEASRNLIDLFIPFLHAEEE LNFE ++HK+TLPL T HD
Sbjct: 208 LTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKMTLPLFTFHD 254
[8][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 286 bits (733), Expect = 5e-76
Identities = 141/175 (80%), Positives = 155/175 (88%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASICFKGPG VTAQ++ILPPSV IVDNTQHIAN+TEPI LC+
Sbjct: 89 MNLKEIVLRSNLYGTRDASICFKGPGSVTAQDIILPPSVEIVDNTQHIANLTEPINLCME 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L++ER+RGYRI TL N QD SY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKLERNRGYRIKTLNNIQDESYTIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLIDLFIPFLHAEE+KLN E ++ KVTLPL T HD K KL+
Sbjct: 209 LTPKEALFEASRNLIDLFIPFLHAEEDKLNLENNQQKVTLPLFTFHDRFVKDKLR 263
[9][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 278 bits (712), Expect = 1e-73
Identities = 139/173 (80%), Positives = 153/173 (88%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG R+ASIC KGPG VTAQ++ILP SV IVDNTQ+IAN+TEPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTRNASICVKGPGCVTAQDIILPTSVEIVDNTQYIANLTEPINLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEEE L+ E +++KVTLP T HD LAK +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQYKVTLPFFTFHDRLAKLR 261
[10][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 275 bits (704), Expect = 1e-72
Identities = 137/177 (77%), Positives = 153/177 (86%), Gaps = 2/177 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLK+IVL+SNLYG RDASICFKGPGYVTA+++ILPPSV IVDNTQHIAN+TEPI LCI
Sbjct: 89 MNLKQIVLRSNLYGTRDASICFKGPGYVTARDIILPPSVEIVDNTQHIANLTEPINLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDA--IFMPVRNANHSIHSYVNGNEKQEILFLEIWTN 172
LQIER RGYR T+ N QDGSY ID +FMPV +AN+SIHSY+N NEKQEILFLEIWTN
Sbjct: 149 LQIERARGYRKKTIDNIQDGSYTIDVDPVFMPVIHANYSIHSYLNANEKQEILFLEIWTN 208
Query: 171 GSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
GSLTPKEALYEA+RNLIDLFIPFLHAEEE +FE ++HKVTLPL HD L K KL+
Sbjct: 209 GSLTPKEALYEAARNLIDLFIPFLHAEEENFHFENNQHKVTLPLFAFHDRLVKDKLR 265
[11][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 275 bits (702), Expect = 2e-72
Identities = 136/173 (78%), Positives = 149/173 (86%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG R A IC +GPGYVTAQ++I PPSV IVDNTQHIA + EPI LCIG
Sbjct: 83 MNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEIVDNTQHIARLMEPIDLCIG 142
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I NFQDGSY IDA+FMPVRNANHSIHSY NGNE+QEILFLEIWTNGS
Sbjct: 143 LQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNERQEILFLEIWTNGS 202
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEEE L+ EY++HK TLP T HD LAK +
Sbjct: 203 LTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTLPPLTFHDRLAKLR 255
[12][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 275 bits (702), Expect = 2e-72
Identities = 136/173 (78%), Positives = 149/173 (86%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG R A IC +GPGYVTAQ++I PPSV IVDNTQHIA + EPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEIVDNTQHIARLMEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I NFQDGSY IDA+FMPVRNANHSIHSY NGNE+QEILFLEIWTNGS
Sbjct: 149 LQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNERQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEEE L+ EY++HK TLP T HD LAK +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTLPPLTFHDRLAKLR 261
[13][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 274 bits (701), Expect = 2e-72
Identities = 136/175 (77%), Positives = 148/175 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG R+A IC KGPGYVTAQ++ILPPSV IVDNTQHIA++TEPI LCIG
Sbjct: 91 MNLKEIVLRSNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHIASLTEPIDLCIG 150
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I T NF DGSY ID +FMPVRN NHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 151 LQIERNRGYGIKTPNNFHDGSYPIDVVFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGS 210
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLIDLFIPFLHAEEE + E +HKVTLP HD L K + K
Sbjct: 211 LTPKEALHEASRNLIDLFIPFLHAEEENSHLENSQHKVTLPFFPFHDKLTKLRKK 265
[14][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 274 bits (701), Expect = 2e-72
Identities = 137/175 (78%), Positives = 151/175 (86%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDA IC KGPGYVTAQ+++LPPSV IVDNTQHIA++TEPI L IG
Sbjct: 89 MNLKEIVLRSNLYGTRDAFICVKGPGYVTAQDIVLPPSVEIVDNTQHIASLTEPIDLRIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I T NFQDGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQNANHSIHSYGTGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLHAEEEK E ++HKVTLP HD LAK + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHAEEEKFYLENNQHKVTLPFFPFHDRLAKLRKK 263
[15][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 274 bits (701), Expect = 2e-72
Identities = 140/177 (79%), Positives = 153/177 (86%), Gaps = 2/177 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASIC KGPG VTAQ++ILPPSV IVDNTQHIAN+ EPI LCI
Sbjct: 89 MNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY I T NFQD SY +DAIFMPVRN NHSIHSYVNGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNF--EYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLIDLFIPFLHAEEEK NF + ++ KVTLPL T H+ LAK + K
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKVTLPLFTFHEKLAKLRKK 265
[16][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 273 bits (699), Expect = 4e-72
Identities = 135/173 (78%), Positives = 149/173 (86%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLK +VLKSNLYG DASI KGPGYVTAQ++ILPP V I+DNTQHIA++TE I LCIG
Sbjct: 89 MNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEIIDNTQHIASLTESIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGYRI NFQDGSY IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEEE L+ E ++HKVTLPL T H L K +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPLFTFHGRLTKLR 261
[17][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 273 bits (698), Expect = 5e-72
Identities = 138/173 (79%), Positives = 150/173 (86%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASIC KGPGYVTAQ++ILPPSV IVDNTQHIAN+TEPI LCI
Sbjct: 89 MNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPITLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGYRI T NFQ+GSY IDA+FMPVRNANHSIHSYVNGNE QEILFLEIWTNGS
Sbjct: 149 LQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHSIHSYVNGNENQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPF HAEE + E ++HK TLPL H LAK +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFFHAEE---HLENNQHKGTLPLFNFHGRLAKPR 258
[18][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 270 bits (689), Expect = 6e-71
Identities = 132/173 (76%), Positives = 150/173 (86%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC KGPG VTAQ++ILPPSV I+DNTQHIA++ EPI L IG
Sbjct: 89 MNLKEIVLRSNLYGTHDASICVKGPGCVTAQDIILPPSVEIIDNTQHIASLREPIDLHIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NFQDGSY+IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEEE + E ++HK+TLPL HD LAK +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEENFHLEKNQHKITLPLFAFHDRLAKLR 261
[19][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 269 bits (687), Expect = 1e-70
Identities = 132/173 (76%), Positives = 149/173 (86%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG R+ASIC +GPGYVTAQ++I PPSV VDNTQHIAN+TEPI CI
Sbjct: 89 MNLKEIVLRSNLYGTRNASICIRGPGYVTAQDIISPPSVETVDNTQHIANLTEPIDFCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGYR+ T N QDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LEIERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHSIHSYANGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHA+EE + E +++ VTLP T HD LAK +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAQEENILLEDNQNGVTLPFFTFHDRLAKIR 261
[20][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 268 bits (685), Expect = 2e-70
Identities = 133/175 (76%), Positives = 146/175 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+ NLYG R+A IC KGPGYVTAQ++ILPPSV IVDNTQH+A++TEPI LCIG
Sbjct: 91 MNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHVASLTEPIDLCIG 150
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I T NF DGSY IDA+FMPVRNANHSIH Y N NEKQEILFLEIWTNGS
Sbjct: 151 LQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHCYGNDNEKQEILFLEIWTNGS 210
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLIDLFIPFLH EEE L+ E ++H VTLP HD L K K
Sbjct: 211 LTPKEALHEASRNLIDLFIPFLHTEEENLHLENNQHDVTLPFFPFHDRLVKLTKK 265
[21][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 268 bits (684), Expect = 2e-70
Identities = 135/177 (76%), Positives = 151/177 (85%), Gaps = 4/177 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC KGPGYVTAQ++ILPP V I+DNTQHIA++T+ I LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCDASICVKGPGYVTAQDIILPPFVEIIDNTQHIASLTKAIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQ--DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTN 172
LQIER+RGYRI NFQ DGSY+IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTN
Sbjct: 149 LQIERNRGYRIKPTNNFQVQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTN 208
Query: 171 GSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYD--EHKVTLPLPTCHDLLAKTK 7
GSLTPKEAL+EASRNLID FIPFLHAEEE L+ E + +HKVTLPL HD L K +
Sbjct: 209 GSLTPKEALHEASRNLIDFFIPFLHAEEENLHLEIEKNQHKVTLPLFCFHDKLTKLR 265
[22][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 268 bits (684), Expect = 2e-70
Identities = 131/173 (75%), Positives = 150/173 (86%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +ASIC KGPG VTAQ++ILPPSV I+DNTQHIA++ EPI L IG
Sbjct: 89 MNLKEIVLRSNLYGTHNASICVKGPGCVTAQDIILPPSVEIIDNTQHIASLREPIDLHIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NFQDGSY+IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEEE + E ++HK+TLPL HD LAK +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEESFHLEKNQHKITLPLFAFHDRLAKLR 261
[23][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 267 bits (683), Expect = 3e-70
Identities = 131/173 (75%), Positives = 148/173 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SN+YG+RDASIC +GP YVTAQ++I PPSV IVD TQHIAN+TEPI LCIG
Sbjct: 89 LNLKEIVLRSNIYGVRDASICARGPKYVTAQDIISPPSVEIVDTTQHIANLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI RDRGYR TN Q+GSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLFIPFLHAEEE +NF+ ++++ TLP+ T D L K
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEEDINFKENKNRFTLPIFTFQDRLTNLK 261
[24][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 266 bits (679), Expect = 9e-70
Identities = 132/171 (77%), Positives = 146/171 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +AS+C KGPGYVTAQ++ILPP V IVDNTQHIA++TEPI CIG
Sbjct: 89 MNLKEIVLRSNLYGTSEASVCVKGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
LTPKEAL+EASRNLIDLFIPFLH EE+ L + ++H V L T HD LAK
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
[25][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 265 bits (678), Expect = 1e-69
Identities = 132/171 (77%), Positives = 146/171 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC KGPGYVTAQ++ILPP V IVDNTQHIA++TEPI CIG
Sbjct: 89 MNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILF+EIWTNGS
Sbjct: 149 LQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFIEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
LTPKEAL++ASRNLIDLFIPFLH EE+ L + ++H V L T HD LAK
Sbjct: 209 LTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
[26][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 265 bits (677), Expect = 1e-69
Identities = 132/173 (76%), Positives = 147/173 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC +GP YVTAQ++ILPPSV IVD TQHIAN+TEPI L I
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVRGPRYVTAQDIILPPSVEIVDPTQHIANLTEPIDLYIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGYR+ N QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLFIPFLHAEEE +NFE ++++ TLP T D L K
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFTLPFLTFQDRLTNLK 261
[27][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 265 bits (676), Expect = 2e-69
Identities = 131/172 (76%), Positives = 148/172 (86%)
Frame = -2
Query: 522 NLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIGL 343
NLKEIVL+SNLY IRDASIC +GP YVTAQ++I PP V IVD TQ+IAN+TEPI LCI L
Sbjct: 90 NLKEIVLRSNLYEIRDASICVRGPRYVTAQDIISPPYVEIVDTTQYIANLTEPIDLCIEL 149
Query: 342 QIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSL 163
+I+RDRGYR+ +TN QDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSL
Sbjct: 150 EIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSL 209
Query: 162 TPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
TPKEALYEASRNLIDLF+PFLHAEEE +NFE +++K TLP T D L+ K
Sbjct: 210 TPKEALYEASRNLIDLFVPFLHAEEEDINFEENKNKFTLPPLTFQDRLSNLK 261
[28][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 264 bits (674), Expect = 3e-69
Identities = 131/171 (76%), Positives = 146/171 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +ASIC KGPGYVTAQ++ILPP V IVDNTQHIA++TEPI CIG
Sbjct: 89 MNLKEIVLRSNLYGTSEASICVKGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILF+EIWTNGS
Sbjct: 149 LQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFIEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
LTPKEAL++ASRNLIDLFIPFLH EE+ L + ++H V L T HD LAK
Sbjct: 209 LTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
[29][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 263 bits (673), Expect = 4e-69
Identities = 132/171 (77%), Positives = 145/171 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEI+L+SNLYG DASIC KGPG VTAQ++ILPP V IVDNTQHIA++TEPI CIG
Sbjct: 89 MNLKEIILRSNLYGTSDASICVKGPGSVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
LTPKEAL+EASRNLIDLFIPFLH EE+ L + ++H V L T HD LAK
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
[30][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 263 bits (671), Expect = 7e-69
Identities = 132/173 (76%), Positives = 147/173 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASIC KGPGYVTAQ++I PPSV IVD TQHIA++TEPI LCI
Sbjct: 89 MNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEIVDITQHIASLTEPIDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGYR+ T N Q+ SY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWT+GS
Sbjct: 149 LQIERNRGYRMKTPNNAQERSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTDGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLFIPFLHAEE+ E ++ +VTLP T HD L K +
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEQDTKLEDNQSRVTLPFFTFHDGLDKVR 261
[31][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 263 bits (671), Expect = 7e-69
Identities = 130/173 (75%), Positives = 148/173 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +ASIC KGPG VTAQ+++LPPSV I+DNTQHIA++ EPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEIIDNTQHIASLMEPIHLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I + NFQDGSY IDA+FMPVRNANHSIHSY N NEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLF+PFLHAEEE L+ +++ VT PL T H LAK +
Sbjct: 209 LTPKEALHEASRNLIDLFLPFLHAEEENLHLGNNKYNVTFPLFTFHKKLAKLR 261
[32][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 263 bits (671), Expect = 7e-69
Identities = 130/173 (75%), Positives = 148/173 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +ASIC KGPG VTAQ+++LPPSV I+DNTQHIA++ EPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEIIDNTQHIASLMEPIHLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I + NFQDGSY IDA+FMPVRNANHSIHSY N NEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLF+PFLHAEEE L+ +++ VT PL T H LAK +
Sbjct: 209 LTPKEALHEASRNLIDLFLPFLHAEEENLHLGKNKYNVTFPLFTFHKKLAKLR 261
[33][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 263 bits (671), Expect = 7e-69
Identities = 132/171 (77%), Positives = 145/171 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC KGPGYVTAQ++ILPP V IVDNTQHIA++TE I CIG
Sbjct: 89 MNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNTQHIASLTETIDFCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+R+RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
LTPKEAL+EASRNLIDLFIPFLH EE+ L + ++H V L T HD LAK
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
[34][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 262 bits (670), Expect = 9e-69
Identities = 130/173 (75%), Positives = 147/173 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASIC +GP +VTAQ++I PPSV I+D TQHIA++TEPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTRDASICVRGPRHVTAQDIISPPSVEIIDTTQHIASLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY + T N QDG Y IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYNMKTPKNSQDGRYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHA EE + +++KV LPL T HD LAK +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHANEENFILKDNQNKVALPLFTFHDRLAKQR 261
[35][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 262 bits (670), Expect = 9e-69
Identities = 130/173 (75%), Positives = 148/173 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASIC +GP VTAQ++I PPSV +VD TQHIA++TEPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEVVDTTQHIASLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGYR+ T N QDGSY IDA+ MPVRNANHSIHSY NGN+KQEILFLEIWTNGS
Sbjct: 149 LQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEEE +NFE ++++ T+P T D LA K
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVPPFTFPDRLANLK 261
[36][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 262 bits (670), Expect = 9e-69
Identities = 130/173 (75%), Positives = 148/173 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASIC +GP VTAQ++I PPSV +VD TQHIA++TEPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEVVDTTQHIASLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGYR+ T N QDGSY IDA+ MPVRNANHSIHSY NGN+KQEILFLEIWTNGS
Sbjct: 149 LQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEEE +NFE ++++ T+P T D LA K
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVPPFTFPDRLANLK 261
[37][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 262 bits (669), Expect = 1e-68
Identities = 132/173 (76%), Positives = 145/173 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC +GPGYVTAQ++ILPP V IVDNTQHIA++TEPI LCIG
Sbjct: 63 MNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDLCIG 122
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+R+RGY I NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 123 LQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 182
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EA RNLIDLFIPFLH EEE L E ++H V L T HD L K +
Sbjct: 183 LTPKEALHEACRNLIDLFIPFLHKEEENLPLEDNQHTVPLSPLTFHDKLDKLR 235
[38][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 261 bits (668), Expect = 2e-68
Identities = 131/173 (75%), Positives = 146/173 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC KGPG VTA+++ILPPSV IVDNTQHIA +TEPI CIG
Sbjct: 89 MNLKEIVLRSNLYGTCDASICVKGPGCVTAEDIILPPSVEIVDNTQHIAWLTEPIDFCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY + T NF+DGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYILKTHHNFEDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLH EEE L+ E EH + L + HD +AK +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHMEEENLHLEDGEHTIPLSPLSFHDKVAKLR 261
[39][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 261 bits (668), Expect = 2e-68
Identities = 131/173 (75%), Positives = 146/173 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC +GP VTAQ++I PPSV IVD TQHIAN+TEPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTLDASICVRGPRSVTAQDIISPPSVEIVDTTQHIANLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIERDRGYR+ T N+QDGSY ID +FMPVRNANHSIHSY NG EKQEILFLEIWTNGS
Sbjct: 149 LQIERDRGYRLKTPNNYQDGSYPIDTVFMPVRNANHSIHSYGNGTEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLI+LFIPFLHAEE+++ E E+ T+PL T H+ LA K
Sbjct: 209 LTPKEALYEASRNLINLFIPFLHAEEQEILLEDSENISTVPLFTFHNELANLK 261
[40][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 261 bits (666), Expect = 3e-68
Identities = 131/174 (75%), Positives = 146/174 (83%), Gaps = 1/174 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEI+LKSNLYG DASIC +GPGYVTAQ++I PP V IVDNTQHIA++ EPI LCIG
Sbjct: 89 MNLKEIILKSNLYGTCDASICIRGPGYVTAQDIISPPYVEIVDNTQHIASLAEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTN-FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNG 169
LQIER+RGY I T N FQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNG
Sbjct: 149 LQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNG 208
Query: 168 SLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
SLTPKEAL++ASRNLIDLFIPFLH EEE L+ ++H V LP T H+ L K +
Sbjct: 209 SLTPKEALHQASRNLIDLFIPFLHTEEENLHLADNQHTVPLPPFTFHEKLTKLR 262
[41][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 261 bits (666), Expect = 3e-68
Identities = 131/174 (75%), Positives = 148/174 (85%), Gaps = 1/174 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC +GPGYVTAQ++ILPP V +VDNTQHIA++TEPI+LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELCIG 148
Query: 345 LQIERDRGYRIYTLTN-FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNG 169
LQIER+RGY I T N +DGSY IDA+FMPVRNANHSIHSY NGN+KQEILFLEIWTNG
Sbjct: 149 LQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWTNG 208
Query: 168 SLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
SLTPKEAL+EASRNLIDLFIPFLH EEE L+ ++H V LP T HD L K +
Sbjct: 209 SLTPKEALHEASRNLIDLFIPFLHTEEENLHLANNQHMVPLPPFTFHDKLDKLR 262
[42][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 259 bits (663), Expect = 6e-68
Identities = 128/173 (73%), Positives = 146/173 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEI+L+SNLYG+ DASIC +GP YVTAQ++I PP V IVD TQHIAN+TEPI LCI
Sbjct: 89 LNLKEIILRSNLYGVIDASICVRGPRYVTAQDIISPPYVEIVDTTQHIANLTEPIDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGYR+ + N QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLFIPFLHAEEE +NFE ++++ LPL T + L K
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFPLPLFTFQNRLTNLK 261
[43][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 259 bits (661), Expect = 1e-67
Identities = 130/173 (75%), Positives = 148/173 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +ASIC +GP VTAQ++ILPP V IVDNTQHIA++TEPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCEASICVRGPRGVTAQDIILPPYVEIVDNTQHIASLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQ+ER+RGY I NFQDGS+ IDA+FMPVRN NHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDL IPFLHA EE +N E ++HKV+LPL T H+ LA+ +
Sbjct: 209 LTPKEALYEASRNLIDLLIPFLHA-EENVNLEDNQHKVSLPLFTFHNRLAEIR 260
[44][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 259 bits (661), Expect = 1e-67
Identities = 131/174 (75%), Positives = 144/174 (82%), Gaps = 1/174 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASIC KGPGYVTAQ++I PPSV IVD TQHIA++TEP+ CIG
Sbjct: 89 MNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEIVDTTQHIASLTEPVDFCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE +RGYR+ T N Q GSY IDA+FMPVRNANHSIHSY NGNE QEILFLEIWTNGS
Sbjct: 149 LQIESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHSYGNGNENQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNF-EYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLFIPFLHAEE+ N + ++ VTLP T HD K K
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEQDQNLKDNQKNGVTLPFFTFHDGFDKLK 262
[45][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 258 bits (660), Expect = 1e-67
Identities = 130/175 (74%), Positives = 148/175 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC KGP +TA+++I PPSV IVD TQHIA++TEP LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCDASICVKGPINITAKDIISPPSVEIVDTTQHIASLTEPFDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGYR+ T Q+GSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLIDLFIPFLHAEE+ + E ++++VTLP T HD LAK K K
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEQDIILEDNQNRVTLPFFTFHDGLAKLKKK 263
[46][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 258 bits (660), Expect = 1e-67
Identities = 129/173 (74%), Positives = 147/173 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+LYG RDASIC +GP YVTAQ++I PPSV IVD TQHIA++TEPI LCI
Sbjct: 89 MNLKEIVLRSHLYGTRDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIERDRGYR+ T N+QDGSY IDA+ MPVRNANHSIHSY N NEKQEILFLEIWTNGS
Sbjct: 149 LQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNRNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEE+ + E + ++ T+PL T HD LA +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEQDIVLEDNPNRFTVPLFTFHDRLANIR 261
[47][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 258 bits (658), Expect = 2e-67
Identities = 132/176 (75%), Positives = 147/176 (83%), Gaps = 1/176 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLK+IVL+SNLYG DA IC KGPGYVTAQ+++LPPSV IVDNTQHIA++TEPI L IG
Sbjct: 89 MNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGS-YNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNG 169
LQIER RGY I T FQDG+ Y IDA+FMPVRNANHSI SY NGNEKQEILFLEIWTNG
Sbjct: 149 LQIERSRGYNIKTPNTFQDGNCYPIDAVFMPVRNANHSIQSYGNGNEKQEILFLEIWTNG 208
Query: 168 SLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
SLTPKEAL+EASR+LIDLFIPFL AE+E L E +++KVTLP T HD LAK K
Sbjct: 209 SLTPKEALHEASRSLIDLFIPFLQAEDENLPLENNQYKVTLPFFTFHDRLAKLTKK 264
[48][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 258 bits (658), Expect = 2e-67
Identities = 127/175 (72%), Positives = 147/175 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG R+ASIC +GP YVTAQ++I PPSV IVD TQHIA++TEPI LCI
Sbjct: 89 MNLKEIVLRSNLYGTRNASICVRGPRYVTAQDIISPPSVEIVDTTQHIASLTEPIDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGYR+ T +Q+GSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLIDLFIPFLHAEEE + E + ++ +P T HD LA T ++
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEEGIRLEDNPNRFNIPFFTFHDGLANTNIR 263
[49][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 257 bits (657), Expect = 3e-67
Identities = 130/173 (75%), Positives = 145/173 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG R A IC +GPGYVTAQ++I PPSV IVDNTQHIA + EPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEIVDNTQHIARLMEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY +GSY IDA+FMPVRNANHSIHSY NG+E+QEILFLEIWTNGS
Sbjct: 149 LQIERNRGY---------NGSYPIDAVFMPVRNANHSIHSYGNGSERQEILFLEIWTNGS 199
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEEE L+ EY++HK TLP T HD LAK +
Sbjct: 200 LTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKGTLPPLTFHDRLAKLR 252
[50][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 257 bits (657), Expect = 3e-67
Identities = 126/167 (75%), Positives = 143/167 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIV +S+LYG R ASIC +GP YVTAQ++I PPSV IVD TQ+IA++TEPI LCI
Sbjct: 89 MNLKEIVFRSHLYGTRGASICVRGPRYVTAQDIISPPSVKIVDTTQYIASLTEPIDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIERDRGYRI T N+QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERDRGYRIKTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHD 25
TPKEALYEASRNLIDLF+PFLHAEE+ +N E ++++ T PL T HD
Sbjct: 209 FTPKEALYEASRNLIDLFLPFLHAEEQDINVEDNQNRATAPLFTFHD 255
[51][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 257 bits (656), Expect = 4e-67
Identities = 131/177 (74%), Positives = 147/177 (83%), Gaps = 2/177 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+ NLYG R+A IC KGPGYVTAQ++ILPPSV IVDNTQH+A++TEPI LCIG
Sbjct: 91 MNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHVASLTEPIDLCIG 150
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I T NF DGSY IDA+FMPVRNANHSIH Y N NEKQEILFLEIWTNGS
Sbjct: 151 LQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHCYGNDNEKQEILFLEIWTNGS 210
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLP--LPTCHDLLAKTKLK 1
LTPKEAL+EASRNLIDLFI FLHA+EE L+ E ++H VTL P + L+ TK K
Sbjct: 211 LTPKEALHEASRNLIDLFIHFLHAKEENLHLENNQHDVTLHFFFPFHYRLVKLTKKK 267
[52][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 256 bits (655), Expect = 5e-67
Identities = 129/175 (73%), Positives = 146/175 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC +GP YVTAQ++ILPPSV IVD TQHIAN+TE + LCI
Sbjct: 89 MNLKEIVLRSNLYGTLDASICIRGPRYVTAQDIILPPSVEIVDATQHIANLTERVDLCIK 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIERDRGY + T N +DGSY IDAIFMPVRNANHS+HSY NGNEKQEILF+EIWTNGS
Sbjct: 149 LQIERDRGYSMKTPHNDEDGSYPIDAIFMPVRNANHSVHSYGNGNEKQEILFIEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEALYEASRNLIDLFIPFLHAEE +++ E + + V L L T HD A T ++
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEREIHLEDNANGVPLALFTFHDEFAITNIR 263
[53][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 256 bits (654), Expect = 7e-67
Identities = 124/175 (70%), Positives = 146/175 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVL+SNLYG R+A IC +GPGY+TA+++ILPPSV I+DNTQHIA +TEPI LCIG
Sbjct: 89 MNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHIATLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLH EEE E ++H+VTLPL H+ L + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFHNRLVNLRKK 263
[54][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 256 bits (654), Expect = 7e-67
Identities = 124/175 (70%), Positives = 146/175 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVL+SNLYG R+A IC +GPGY+TA+++ILPPSV I+DNTQHIA +TEPI LCIG
Sbjct: 89 MNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHIATLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLH EEE E ++H+VTLPL H+ L + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFHNRLVNLRKK 263
[55][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 256 bits (653), Expect = 9e-67
Identities = 124/175 (70%), Positives = 145/175 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVLKSNLYG R+ IC +GPGY+TA+++ILPPSV IVDNTQHIA +TEPI LCIG
Sbjct: 89 MNLNEIVLKSNLYGTRNPFICVQGPGYITARDIILPPSVEIVDNTQHIATLTEPINLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILF+EIWTNGS
Sbjct: 149 LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFIEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEALYEASRNLI+LFIPFLH EEE E ++H+VTLP+ H+ L + K
Sbjct: 209 LTPKEALYEASRNLINLFIPFLHVEEETFYLENNQHQVTLPVFPFHNKLVNLRQK 263
[56][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 255 bits (652), Expect = 1e-66
Identities = 124/175 (70%), Positives = 145/175 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVL+SNLYG R+A IC +GPGY+TAQ++ILPPSV I+DNTQHIA + EPI LCIG
Sbjct: 89 MNLNEIVLRSNLYGTRNALICVQGPGYITAQDIILPPSVEIIDNTQHIATLMEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLH EEE E ++H+VTLPL H+ L + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFHNRLVNLRKK 263
[57][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 254 bits (650), Expect = 2e-66
Identities = 124/175 (70%), Positives = 145/175 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVL+SNLYG R+A IC +GPGY+TAQ++ILPPSV I+DNTQHIA +TEPI LCI
Sbjct: 89 MNLNEIVLRSNLYGTRNALICVQGPGYITAQDIILPPSVEIIDNTQHIATLTEPIDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLH EEE E ++H+VTLPL H+ L + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFHNRLVNLRKK 263
[58][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 254 bits (650), Expect = 2e-66
Identities = 129/175 (73%), Positives = 146/175 (83%), Gaps = 2/175 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVLKSNLYG RDASIC +GP YVTAQ++I PPSV IVD TQHIA++TEPI LCI
Sbjct: 89 MNLKEIVLKSNLYGTRDASICVRGPKYVTAQDIISPPSVEIVDTTQHIASLTEPINLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIERDRGYR+ N+QDGSY IDA+ MPVRNANHSIHSY +GNEKQEILFLEIWTNGS
Sbjct: 149 LQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNANHSIHSYGSGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEE--KLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLHAEE+ LN E ++++ T+ T HD L +
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNRFTVSPFTLHDRLGNIR 263
[59][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 254 bits (649), Expect = 3e-66
Identities = 131/176 (74%), Positives = 147/176 (83%), Gaps = 3/176 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC +GPGYVTAQ++ILPP V +VDNTQHIA++TEPI+L IG
Sbjct: 89 MNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELHIG 148
Query: 345 LQIERDRGYRIYT-LTNFQDGSYNIDAIFMPVRNANHSIHSY--VNGNEKQEILFLEIWT 175
LQIER RGY I T NFQDGSY IDA+FMP+RNANHSIHSY NGN+KQEILFLEIWT
Sbjct: 149 LQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRNANHSIHSYGNGNGNDKQEILFLEIWT 208
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
NGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ ++H V LP T HD L K +
Sbjct: 209 NGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLADNQHMVPLPPFTFHDNLDKLR 264
[60][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 254 bits (649), Expect = 3e-66
Identities = 126/169 (74%), Positives = 144/169 (85%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG R+ASIC KGP +TA+++ILP SV IVD TQHIA +TEP+ L IG
Sbjct: 89 MNLKEIVLRSNLYGTREASICVKGPKTITAEDIILPASVEIVDTTQHIATLTEPLDLYIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGYR+ N QDGSY IDA+FMPVRNANHSI+SY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVRNANHSIYSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLL 19
LTPKEAL+EASRNLIDLFIPFLHAEE+ +N E ++ + TLPL T HD L
Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEKDINLEENKSRFTLPLFTFHDKL 257
[61][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 253 bits (646), Expect = 6e-66
Identities = 124/175 (70%), Positives = 145/175 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVL+SNLYG R+A IC +GPGY+TA+++ILPPSV IVDNTQHIA VTE I LCIG
Sbjct: 89 MNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIVDNTQHIATVTESIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGN KQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNGKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLH EEE + E ++H+VTLPL H+ L + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETFHLENNQHQVTLPLFPFHNRLVNLRKK 263
[62][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 252 bits (643), Expect = 1e-65
Identities = 122/175 (69%), Positives = 145/175 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVL+SNLYG R+A IC +GPGY+TA+++ILPPSV I+DNTQHIA +TEPI LCI
Sbjct: 89 MNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHIATLTEPIDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLH EEE + E ++H+VTLP H+ L + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETVYLENNQHQVTLPFFPFHNRLVNLRKK 263
[63][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 252 bits (643), Expect = 1e-65
Identities = 123/175 (70%), Positives = 146/175 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL+EIVL+SNLYG +A IC +GPG +TA+++ILPPSV I+DNTQHIA +TEPI LCIG
Sbjct: 89 MNLQEIVLRSNLYGTCNALICVQGPGSITARDIILPPSVEIIDNTQHIATLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY + +F+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNG+
Sbjct: 149 LQIERNRGYSLKMPNHFEDGSYPIDALFMPVQNANHSIHSYGTGNEKQEILFLEIWTNGN 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLH EEE E ++HKVTLPL H+ L K + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHKVTLPLFPFHNRLVKLRKK 263
[64][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 251 bits (642), Expect = 2e-65
Identities = 122/175 (69%), Positives = 144/175 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVL+SNLYG R+A IC +GPGY+TA+++ILPPSV I+DNTQHIA +TEPI LCI
Sbjct: 89 MNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHIATLTEPIDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLH EEE E ++H+VTLP H+ L + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHNRLVNLRKK 263
[65][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 251 bits (641), Expect = 2e-65
Identities = 129/173 (74%), Positives = 144/173 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL NLYG+RDASIC +GP YVTAQ++I PPSV IVD TQHIAN+TEPI L I
Sbjct: 89 INLKEIVL--NLYGVRDASICVRGPRYVTAQDIISPPSVEIVDTTQHIANLTEPIDLRIE 146
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGYRI N QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 147 LQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLFIPFLHAEE ++FE ++++ TLPL T + L K
Sbjct: 207 LTPKEALYEASRNLIDLFIPFLHAEEGDIHFEENKNRFTLPLFTFQNRLTNLK 259
[66][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 251 bits (641), Expect = 2e-65
Identities = 126/173 (72%), Positives = 142/173 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S YG DASIC +GPG VTAQ++I PP V IVD TQHIAN+TEPI L I
Sbjct: 89 MNLKEIVLRSTFYGTCDASICVRGPGGVTAQDIISPPYVEIVDTTQHIANLTEPIDLRIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQ+ER+RGYRI T NFQDGSY ID +FMPVRN NHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LQLERNRGYRIKTPNNFQDGSYPIDVVFMPVRNVNHSIHSYSNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLFIPFL+AE+E + E ++ +VTLPL HD L + +
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLYAEKENFHLEDNQDRVTLPLFLFHDRLIELR 261
[67][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 250 bits (639), Expect = 4e-65
Identities = 121/167 (72%), Positives = 141/167 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVL+SNLYG R+A IC +GPGY+TA+++ILPPSV IVDNTQHIA +TEPI LCIG
Sbjct: 89 MNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIVDNTQHIATLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + N +D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYSLKISNNLEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHD 25
LTPKEAL+EASRNLI+LFIPFLH EEE E ++H+VTLP H+
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHN 255
[68][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 250 bits (639), Expect = 4e-65
Identities = 124/173 (71%), Positives = 142/173 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIV +SNLYG DASIC +GPGYVTAQ+++LPP V IVDNTQHIA + EPI LCI
Sbjct: 89 MNLKEIVFRSNLYGTCDASICVRGPGYVTAQDIVLPPYVEIVDNTQHIARLMEPINLCIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY I T NFQDGSY IDA+FMP+RNAN+SIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LEIERNRGYLIKTPQNFQDGSYPIDAVFMPIRNANYSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL++ASRNLIDLFIPFLH EE+ + E ++H V L HD L K +
Sbjct: 209 LTPKEALHQASRNLIDLFIPFLHMEEQNSHLENNQHTVPLAPFFFHDKLDKLR 261
[69][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 249 bits (637), Expect = 6e-65
Identities = 120/156 (76%), Positives = 137/156 (87%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DA+IC KGPGYVTAQ++I PP V I+DNTQHIA++TEPI+LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCDAAICVKGPGYVTAQDIISPPYVEIIDNTQHIASLTEPIELCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY I T NFQDGSY IDA+FMPVRN NHSI+SY GN+K EILFLEIWTNGS
Sbjct: 149 LQIERNRGYLIKTAKNFQDGSYPIDAVFMPVRNVNHSIYSYGTGNDKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEH 58
LTPKEAL+EA+RNLIDLFIPFLH EEE L+ E ++H
Sbjct: 209 LTPKEALHEAARNLIDLFIPFLHTEEENLDLEDNQH 244
[70][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 249 bits (637), Expect = 6e-65
Identities = 122/175 (69%), Positives = 143/175 (81%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVL+SNLYG R+A IC +GPGY+TA+++ILPPSV I+DNTQHIA +TE I LCIG
Sbjct: 89 MNLNEIVLRSNLYGARNAIICVQGPGYITARDIILPPSVEIIDNTQHIATLTESIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + L F+D SY IDA+FMPV+NANHSIHSY NGN KQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYSLKILNTFEDRSYPIDAVFMPVQNANHSIHSYGNGNGKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLH EEE E ++H VTLPL H+ L + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHHVTLPLFPFHNRLVNLRKK 263
[71][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 249 bits (636), Expect = 8e-65
Identities = 126/171 (73%), Positives = 143/171 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +ASIC +GPGYVTAQ++ILPP V I+DNTQHIA++TEPI+L IG
Sbjct: 89 MNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEILDNTQHIASLTEPIELVIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I FQDGSY ID +FMPVRNANHSIHSY NGN +EILFLEIWTNGS
Sbjct: 149 LQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGN--KEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
LTPKEALYEASRNLIDL IPFLH +EE LN E ++H V LP T +D LAK
Sbjct: 207 LTPKEALYEASRNLIDLLIPFLHTKEENLNLEGNQHMVPLPPFTFYDKLAK 257
[72][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 249 bits (636), Expect = 8e-65
Identities = 123/175 (70%), Positives = 144/175 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL+EIVL+SNLYG +A IC +GPGY+TA+++ILPPSV I+DNTQHIA +TEPI LCIG
Sbjct: 89 MNLQEIVLRSNLYGTCNALICVQGPGYITARDIILPPSVEIMDNTQHIATLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY + F+DGSY IDA+FMPV+NANHSIHSY GNE QEILFLEIWTNG+
Sbjct: 149 LQIERNRGYSLKMPNPFEDGSYPIDALFMPVQNANHSIHSYGTGNENQEILFLEIWTNGN 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLI+LFIPFLH EEE E +E KVTLPL H+ L K + K
Sbjct: 209 LTPKEALHEASRNLINLFIPFLHVEEETFYLENNEDKVTLPLFPFHNRLVKLRKK 263
[73][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 249 bits (635), Expect = 1e-64
Identities = 119/161 (73%), Positives = 140/161 (86%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLK+IVL+SNLYG+R+ASIC +GP Y+TAQ++I PPSV IVD TQHIAN+TEPI LCI
Sbjct: 89 LNLKDIVLRSNLYGVRNASICVRGPKYITAQDIISPPSVEIVDTTQHIANLTEPINLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGYR+ + + DGSY ID + MPVRNANHSIHSY NGNEKQEILF+EIWTNGS
Sbjct: 149 LQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNANHSIHSYGNGNEKQEILFIEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLP 43
LTPKEALYEASRNLIDL IPFLHAEEE +NF+ +E++ LP
Sbjct: 209 LTPKEALYEASRNLIDLLIPFLHAEEEDMNFKENENRWNLP 249
[74][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 249 bits (635), Expect = 1e-64
Identities = 127/173 (73%), Positives = 146/173 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASI KGPG+VTA+++ILPP V IVD+TQHIA +TEPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCDASISIKGPGHVTAKDIILPPHVEIVDSTQHIAWLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY I T NF+DGSY IDA+FMPVRNANHSIHSY GNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYFIKTHPNFEDGSYPIDAVFMPVRNANHSIHSY--GNEKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLH EEE L+ E +H ++L T +D +AK +
Sbjct: 207 LTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTISLSPFTVYDKVAKLR 259
[75][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 249 bits (635), Expect = 1e-64
Identities = 120/175 (68%), Positives = 143/175 (81%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL EIVL+SNLYG R+A IC +GPGY+TA+++ILPP+V I+DNTQHIA +TEPI LCI
Sbjct: 89 MNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQHIATLTEPIDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + NF+D SY IDA+FMPV NANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL++ASRNLI+LFIPFLH EEE E ++H+VTLP H+ L + K
Sbjct: 209 LTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHNRLVNLRKK 263
[76][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 248 bits (634), Expect = 1e-64
Identities = 126/173 (72%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MN KEIVL+SNLYG DASIC +GPGYVTAQ++ILPP V IVDNTQHIA++TEPI LCIG
Sbjct: 89 MNFKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIER+RGY + N QDGSY IDA+FMPVRNANHSIHSY +GNEK EILFLEIWTNGS
Sbjct: 149 LQIERNRGYLMKMPHNSQDGSYPIDAVFMPVRNANHSIHSYGSGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EA RNLIDLFIPFLH EEE E + H V L T HD K +
Sbjct: 209 LTPKEALHEACRNLIDLFIPFLHKEEETSPLEDNHHTVPLSPLTFHDKADKLR 261
[77][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 248 bits (633), Expect = 2e-64
Identities = 126/171 (73%), Positives = 143/171 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +ASIC +GPGYVTAQ++ILPP V IVDNTQHIA++TEPI+L IG
Sbjct: 89 MNLKEIVLRSNLYGTYEASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIELVIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I FQDGSY ID +FMPVRNANHSIHSY NGN +EILFLEIWTNGS
Sbjct: 149 LQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGN--KEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
LTPKEAL+EASRNLIDL IPFLH +EE LN E ++H V LP T +D LAK
Sbjct: 207 LTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHIVPLPPFTFYDKLAK 257
[78][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 248 bits (633), Expect = 2e-64
Identities = 128/175 (73%), Positives = 145/175 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASI FKGPGYVTA+++ILPP V IVD+TQHIA +TEPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCDASISFKGPGYVTAEDIILPPHVEIVDSTQHIAWLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY I T NF+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLIDLFIPFLH E+E L E +H + L T + +AK K K
Sbjct: 207 LTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADHTIPLSPFTVYYKVAKNKKK 261
[79][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 248 bits (633), Expect = 2e-64
Identities = 128/175 (73%), Positives = 145/175 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASI FKGPGYVTA+++ILPP V IVD+TQHIA +TEPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCDASISFKGPGYVTAEDIILPPHVEIVDSTQHIAWLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY I T NF+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEAL+EASRNLIDLFIPFLH E+E L E +H + L T + +AK K K
Sbjct: 207 LTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADHTIPLSPFTVYYKVAKNKKK 261
[80][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 248 bits (632), Expect = 2e-64
Identities = 125/171 (73%), Positives = 142/171 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +ASIC +GPGYVTAQ++ILPP V IVDNTQHIA +TEPI+L IG
Sbjct: 89 MNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEIVDNTQHIATLTEPIELVIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I FQDGSY ID +FMPVRNANHSIHSY NGN +EILFLEIWTNGS
Sbjct: 149 LQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGN--KEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
LTPKEAL+EASRNLIDL IPFLH +EE LN E ++H + LP T +D LAK
Sbjct: 207 LTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHMIPLPPFTFYDKLAK 257
[81][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 248 bits (632), Expect = 2e-64
Identities = 125/173 (72%), Positives = 140/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++I PPSV IVD TQHIAN+TEPI LCI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIISPPSVEIVDTTQHIANLTEPIDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY N QDGSY IDA+ MPVRN N+SI+S N NEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVRNVNYSIYSCGNENEKYEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLFIPFLHAEEE NFE ++++ TLPL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEEDTNFEENKNRFTLPLLTFQKRLTNLK 261
[82][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 246 bits (627), Expect = 9e-64
Identities = 123/173 (71%), Positives = 141/173 (81%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLK+IV +S+LYG DASIC +GP +VTAQ++I PPSV IVD TQHIA +TEP+ LCI
Sbjct: 89 MNLKKIVFRSDLYGTLDASICVRGPRHVTAQDIISPPSVEIVDTTQHIAILTEPVDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER RGY + T N+QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERGRGYCMRTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLFIPFLHAEE+ +N E + + T+P T HD L K
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEQDINIEDNLKRATVPFFTFHDGLDNMK 261
[83][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 246 bits (627), Expect = 9e-64
Identities = 125/171 (73%), Positives = 143/171 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +ASIC +GPGYVTAQ++ILPP V IVDNTQHIA++TEPI+L IG
Sbjct: 89 MNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIELVIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I FQDGSY ID +FMPVRNANHSIHSY NGN +EILFLEIWTNGS
Sbjct: 149 LQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGN--KEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
LTPKEAL+EASRNLIDL IPFLH +EE L+ E ++H V LP T +D LAK
Sbjct: 207 LTPKEALHEASRNLIDLLIPFLHTKEENLSLEDNQHIVPLPPFTFYDKLAK 257
[84][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 243 bits (620), Expect = 6e-63
Identities = 122/175 (69%), Positives = 141/175 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD +Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTSQPIANLTEPIDFCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L LK
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLNLK 263
[85][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 243 bits (620), Expect = 6e-63
Identities = 121/173 (69%), Positives = 140/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPKYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ + N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[86][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 242 bits (617), Expect = 1e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICIKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[87][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 242 bits (617), Expect = 1e-62
Identities = 126/175 (72%), Positives = 141/175 (80%), Gaps = 2/175 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASI +GP VTAQ++I PPSV +VD TQHIA++TEPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCDASIFVRGPRCVTAQDIISPPSVKMVDTTQHIASLTEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNI--DAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTN 172
LQIERDRGYR+ T N QDGSY I +A+ MPVRNANHSIHSY NGNEKQEILFLEIWTN
Sbjct: 149 LQIERDRGYRMKTPNNDQDGSYPIPIEAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTN 208
Query: 171 GSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
GSLTPKEAL+EAS NLIDLFIPFLH EEE +N E ++ TLP T D LA +
Sbjct: 209 GSLTPKEALHEASHNLIDLFIPFLHGEEEDINLEDSLNRGTLPFFTFQDKLANLR 263
[88][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 242 bits (617), Expect = 1e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[89][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNPK 261
[90][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[91][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[92][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[93][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[94][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[95][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[96][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[97][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLK 261
[98][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDRAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[99][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLK 261
[100][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[101][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 241 bits (616), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLK 261
[102][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 241 bits (615), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDXAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[103][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 241 bits (615), Expect = 2e-62
Identities = 122/173 (70%), Positives = 143/173 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASI KGPGYVTA+++ILPP V +VD+TQHIA + EPI LCIG
Sbjct: 89 MNLKEIVLRSNLYGTCDASISIKGPGYVTAEDIILPPHVEVVDSTQHIAWLMEPIDLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY + T NF+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYFLKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLH E+E L+ E + + L T +D +AK +
Sbjct: 207 LTPKEALHEASRNLIDLFIPFLHIEKENLHLEDADRTIPLSPFTVYDKVAKLR 259
[104][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 241 bits (615), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTXQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[105][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 241 bits (615), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNLNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[106][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 241 bits (615), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFKKRLTNLK 261
[107][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 241 bits (615), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFKKRLTNLK 261
[108][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 241 bits (615), Expect = 2e-62
Identities = 121/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[109][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 240 bits (612), Expect = 5e-62
Identities = 124/173 (71%), Positives = 142/173 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASI KGPGYVTA+++ILPP V IVD+TQHIA +TEPI IG
Sbjct: 89 MNLKEIVLRSNLYGTCDASISIKGPGYVTAEDIILPPHVEIVDSTQHIAWLTEPINFFIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+ GY I T NF+DGSY IDA+FMPVRNANHSI+SY GNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNHGYFIKTHANFEDGSYPIDALFMPVRNANHSINSY--GNEKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EASRNLIDLFIPFLH EEE L+ E +H + L T +D +AK +
Sbjct: 207 LTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTIPLSPFTVYDKVAKLR 259
[110][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 239 bits (611), Expect = 7e-62
Identities = 120/173 (69%), Positives = 138/173 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV VD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVETVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[111][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 239 bits (610), Expect = 9e-62
Identities = 120/173 (69%), Positives = 139/173 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDMAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LRIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[112][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 239 bits (610), Expect = 9e-62
Identities = 118/164 (71%), Positives = 136/164 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD TQ IAN+ EPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTTQPIANLREPIDFCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY N QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPT 34
LTPKEALYEASRNLIDLF+PF+H EEE +FE +++++T PL T
Sbjct: 209 LTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTPPLLT 252
[113][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 239 bits (610), Expect = 9e-62
Identities = 121/175 (69%), Positives = 140/175 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASI KGP Y+TAQ++ILPPSV IVD +Q IAN+TEPI CI
Sbjct: 94 LNLKEIVLRSNLYGVRDASISVKGPRYITAQDIILPPSVEIVDTSQPIANLTEPIDFCIE 153
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 154 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 213
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKLK 1
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L LK
Sbjct: 214 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLNLK 268
[114][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 239 bits (610), Expect = 9e-62
Identities = 121/173 (69%), Positives = 137/173 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY N QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLLTFQKRLTNLK 261
[115][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 239 bits (610), Expect = 9e-62
Identities = 120/173 (69%), Positives = 138/173 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+ EPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLXEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLK 261
[116][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 239 bits (610), Expect = 9e-62
Identities = 121/173 (69%), Positives = 138/173 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[117][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 239 bits (609), Expect = 1e-61
Identities = 120/173 (69%), Positives = 138/173 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T P T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPPFTFQKRLTNLK 261
[118][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 239 bits (609), Expect = 1e-61
Identities = 117/164 (71%), Positives = 136/164 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD TQ IAN+ EP+ CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTTQPIANLREPVDFCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY N QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPT 34
LTPKEALYEASRNLIDLF+PF+H EEE +FE +++++T PL T
Sbjct: 209 LTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTPPLLT 252
[119][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 238 bits (608), Expect = 1e-61
Identities = 120/173 (69%), Positives = 138/173 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTXQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ M VRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMXVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLLTFQKRLTNLK 261
[120][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 238 bits (608), Expect = 1e-61
Identities = 120/173 (69%), Positives = 138/173 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICIKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NG EK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGIEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[121][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 238 bits (608), Expect = 1e-61
Identities = 117/161 (72%), Positives = 135/161 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLP 43
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T P
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPP 249
[122][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 237 bits (605), Expect = 3e-61
Identities = 117/164 (71%), Positives = 135/164 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD TQ IAN+ EP+ CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTTQPIANLREPVDFCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDR Y N QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPT 34
LTPKEALYEASRNLIDLF+PFLH EEE +FE +++++T PL T
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHTEEEGTSFEENKNRLTPPLLT 252
[123][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 237 bits (604), Expect = 4e-61
Identities = 117/164 (71%), Positives = 134/164 (81%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+ EPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLREPIDFCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY N QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPT 34
LTPKEALYEASRNLIDLF+PF+H EEE +FE ++++T PL T
Sbjct: 209 LTPKEALYEASRNLIDLFLPFIHTEEEGTSFEESKNRLTPPLLT 252
[124][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 236 bits (603), Expect = 6e-61
Identities = 119/173 (68%), Positives = 137/173 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP +TAQ++ILPPSV +VD Q IAN+TEPI CI
Sbjct: 89 VNLKEIVLRSNLYGVRDASICVKGPRCITAQDIILPPSVEVVDTAQPIANLTEPIDFCIQ 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTGFEENKNRFTPPLFTFQKRLTNRK 261
[125][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 236 bits (603), Expect = 6e-61
Identities = 119/173 (68%), Positives = 137/173 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTXQPIANLTEPIDFCID 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY+ N+QDGSY I + MPVRN N+SI S NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[126][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 236 bits (602), Expect = 7e-61
Identities = 120/173 (69%), Positives = 136/173 (78%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEPI CI
Sbjct: 89 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDMAQPIANLTEPIDFCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQI+RDRGY N QDGSY IDA+ MPVRN N+SI NGNEK EILFLEIWTNGS
Sbjct: 149 LQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFYCGNGNEKHEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLHAEEE +FE ++++ T PL T L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLLTFQKKLTNLK 261
[127][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 234 bits (597), Expect = 3e-60
Identities = 121/169 (71%), Positives = 135/169 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG ASIC +GPGYVTAQ++ILPP V I DNTQHIA +TEPI CIG
Sbjct: 74 MNLKEIVLRSNLYGTCGASICARGPGYVTAQDIILPPCVEIGDNTQHIARLTEPISFCIG 133
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER RGY I + FQD SY IDA+FMPVRN NHSIHSY GNEKQEILFLEIWTNGS
Sbjct: 134 LEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNVNHSIHSY--GNEKQEILFLEIWTNGS 191
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLL 19
LTPKEAL+EASRNLIDLFIPFLH EEE L E ++ V+ + H+ L
Sbjct: 192 LTPKEALHEASRNLIDLFIPFLHKEEENLPLENNQDTVSFSPFSFHEKL 240
[128][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 234 bits (596), Expect = 4e-60
Identities = 115/163 (70%), Positives = 134/163 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLK++V +S+LYG DASIC +GP +VTAQ++I PPSV IVD TQHIA +TEP+ LCI
Sbjct: 89 MNLKKMVFRSDLYGTLDASICVRGPRHVTAQDIISPPSVEIVDTTQHIAVLTEPVDLCIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER RGY T N+QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGS
Sbjct: 149 LKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLP 37
LTPKEALYEASRNLIDLFIPFLHAEE+ +N +++ +P
Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEQDINRNMEDNLKRASVP 251
[129][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 234 bits (596), Expect = 4e-60
Identities = 119/170 (70%), Positives = 137/170 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEI+++S+LYG RDA IC +GP YVTAQ++I PPSV IVD TQHIA++TEPI CIG
Sbjct: 89 MNLKEIIVRSDLYGTRDAFICVRGPKYVTAQDIISPPSVKIVDTTQHIASITEPINFCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGYR T T QD SY IDA+ MPVRNAN+SI Y N NEKQEILFLEIWTNGS
Sbjct: 149 LEIERNRGYR--TRTTNQDASYPIDAVSMPVRNANYSIQCYGNENEKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLA 16
LTPKEALYEASRNLIDLFIPFLHAEE L+ + D++ T P H+ LA
Sbjct: 207 LTPKEALYEASRNLIDLFIPFLHAEERDLHLDDDQNIFTAPFFPFHEGLA 256
[130][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 226 bits (577), Expect = 6e-58
Identities = 115/171 (67%), Positives = 139/171 (81%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVLKSNLYG DAS+ KGP YVTAQ++ILPP V IVD+TQHIA++TEPI LCIG
Sbjct: 89 MNLKEIVLKSNLYGTCDASLYIKGPRYVTAQDIILPPHVEIVDSTQHIASLTEPINLCIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY I FQ+ +Y++DA+FMPV N NHSI+SY GNEK+EILFLEIWTNGS
Sbjct: 149 LKIERNRGYLIKAHPPFQNETYSLDAVFMPVLNVNHSIYSY--GNEKKEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
LTPKEAL+EA++NL+DLFIPFL EEE LN E EH++ T +D ++K
Sbjct: 207 LTPKEALHEAAQNLMDLFIPFLQMEEENLNLEDAEHQIPFSPFTFYDKVSK 257
[131][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 224 bits (572), Expect = 2e-57
Identities = 114/173 (65%), Positives = 133/173 (76%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP+ I
Sbjct: 69 LNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDMAQPIANLTEPMDFRIE 128
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGS
Sbjct: 129 LRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGS 188
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 189 LTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 241
[132][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 223 bits (568), Expect = 6e-57
Identities = 113/173 (65%), Positives = 132/173 (76%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 69 LNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIE 128
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGS
Sbjct: 129 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGS 188
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 189 LTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENQNRFTSPLLSFQKRLTNLK 241
[133][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 223 bits (567), Expect = 8e-57
Identities = 113/173 (65%), Positives = 132/173 (76%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 69 LNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIE 128
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGS
Sbjct: 129 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGS 188
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 189 LTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 241
[134][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 222 bits (565), Expect = 1e-56
Identities = 113/173 (65%), Positives = 132/173 (76%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 69 LNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPEDFRIE 128
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGS
Sbjct: 129 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGS 188
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 189 LTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 241
[135][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 221 bits (562), Expect = 3e-56
Identities = 112/173 (64%), Positives = 131/173 (75%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 177 LNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIE 236
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGS
Sbjct: 237 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGS 296
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 297 LTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 349
[136][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 221 bits (562), Expect = 3e-56
Identities = 112/173 (64%), Positives = 131/173 (75%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 89 LNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGS
Sbjct: 149 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 261
[137][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 221 bits (562), Expect = 3e-56
Identities = 112/173 (64%), Positives = 131/173 (75%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 198 LNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIE 257
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGS
Sbjct: 258 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGS 317
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 318 LTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 370
[138][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 221 bits (562), Expect = 3e-56
Identities = 112/173 (64%), Positives = 131/173 (75%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 69 LNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFHIE 128
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGS
Sbjct: 129 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGS 188
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 189 LTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 241
[139][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 221 bits (562), Expect = 3e-56
Identities = 112/173 (64%), Positives = 131/173 (75%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 89 LNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGS
Sbjct: 149 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 261
[140][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 219 bits (559), Expect = 7e-56
Identities = 111/173 (64%), Positives = 131/173 (75%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 198 LNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIE 257
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI + NGN + EILFLEIWTNGS
Sbjct: 258 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNARYEILFLEIWTNGS 317
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 318 LTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 370
[141][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 219 bits (559), Expect = 7e-56
Identities = 114/160 (71%), Positives = 127/160 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG DASIC KGP +VTAQ++ILPP V IVDNTQHIA +TEPI IG
Sbjct: 89 MNLKEIVLRSNLYGTCDASICIKGPRHVTAQDIILPPHVQIVDNTQHIAWLTEPIDFFIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY +F DG Y IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYFNKVDLHFDDGIYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTL 46
LTPKEAL+EA+R LID FIPF H EEE L EH + L
Sbjct: 207 LTPKEALHEAARILIDFFIPFFHMEEENLYLADAEHTIPL 246
[142][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 218 bits (556), Expect = 2e-55
Identities = 111/173 (64%), Positives = 130/173 (75%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 69 LNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIE 128
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGS
Sbjct: 129 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGS 188
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTP EALYEASRNLIDLF+PFLH EEE F+ ++++ T PL + L K
Sbjct: 189 LTPMEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 241
[143][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 217 bits (552), Expect = 5e-55
Identities = 114/173 (65%), Positives = 136/173 (78%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG +ASIC KGPGYVTAQ++I PP V IVDNTQHIA++TEPI+L I
Sbjct: 89 MNLKEIVLRSNLYGTCEASICVKGPGYVTAQDIISPPYVEIVDNTQHIASLTEPIELIIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++R ++ FQDGSY I A+ MPVR+ N+SIHS +GN KQEILFLEIWTNGS
Sbjct: 149 LQIEKNRFIQLKERNTFQDGSYAIGAVLMPVRHMNYSIHS--SGNGKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTK 7
LTPKEAL+EA RNLIDLFIPFLH EE N E ++ ++ P T +D L+K K
Sbjct: 207 LTPKEALHEACRNLIDLFIPFLHKEEG--NLENNQDRIPFPSFTFYDKLSKLK 257
[144][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 215 bits (548), Expect = 1e-54
Identities = 112/161 (69%), Positives = 127/161 (78%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLY DASIC KGP +VTAQ++ILPP V IVDNTQHIA +TEPI IG
Sbjct: 89 MNLKEIVLRSNLYESCDASICIKGPRHVTAQDIILPPHVQIVDNTQHIAWLTEPIDFFIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY +F DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLP 43
LTPKEAL+E++R LID FIPF EEE L +H + LP
Sbjct: 207 LTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIXLP 247
[145][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 215 bits (548), Expect = 1e-54
Identities = 112/161 (69%), Positives = 127/161 (78%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLY DASIC KGP +VTAQ++ILPP V IVDNTQHIA +TEPI IG
Sbjct: 89 MNLKEIVLRSNLYESCDASICIKGPRHVTAQDIILPPHVQIVDNTQHIAWLTEPIDFFIG 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IER+RGY +F DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGS
Sbjct: 149 LKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGS 206
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLP 43
LTPKEAL+E++R LID FIPF EEE L +H + LP
Sbjct: 207 LTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIPLP 247
[146][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 214 bits (545), Expect = 3e-54
Identities = 114/170 (67%), Positives = 131/170 (77%), Gaps = 5/170 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNL G RDASIC +GP VTAQ++ILP S IVDNTQHI +TEPI CIG
Sbjct: 89 MNLKEIVLRSNLDGTRDASICVRGPRDVTAQDIILPNSAAIVDNTQHIVTLTEPIDFCIG 148
Query: 345 LQIERDRGY--RIYTLTNFQDG-SYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWT 175
LQI+R+RGY +I TNF D Y IDA+F+PV+N NHSIHSY NG+ E+LFLEIWT
Sbjct: 149 LQIDRNRGYSRKIPMPTNFHDDRGYPIDAVFLPVKNVNHSIHSYENGS--HEMLFLEIWT 206
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE--YDEHKVTLPLPTC 31
NGSLTPKEAL EASR LI+LFIPFLHAEEE +FE +EH LP+ C
Sbjct: 207 NGSLTPKEALREASRKLINLFIPFLHAEEENFHFENNQNEHTDELPIDLC 256
[147][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 213 bits (543), Expect = 5e-54
Identities = 107/151 (70%), Positives = 120/151 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ++ILPPSV IVD Q IAN+TEP I
Sbjct: 198 LNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIE 257
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I+RDRGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGS
Sbjct: 258 LRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGS 317
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNF 73
LTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 318 LTPKEALYEASRNLIDLFLPFLHTEEEGTRF 348
[148][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 213 bits (543), Expect = 5e-54
Identities = 111/160 (69%), Positives = 130/160 (81%), Gaps = 3/160 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+LYG RDASIC +GP VTAQ++ILPPSV IVDNTQHI +TEPI+ C+
Sbjct: 89 MNLKEIVLRSSLYGTRDASICVRGPRDVTAQDIILPPSVSIVDNTQHIVTLTEPIEFCVA 148
Query: 345 LQIERDRGY--RIYTLTNFQD-GSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWT 175
LQIER+RGY RI T N D Y IDA+FMPV+N NHSIHSY NG+ E+LF EIWT
Sbjct: 149 LQIERNRGYSLRIPTPNNSHDERGYPIDAVFMPVKNVNHSIHSYENGS--HEMLFFEIWT 206
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHK 55
NGSLTPKEAL EASR LI+LFIPFLHAEEEK +FE ++++
Sbjct: 207 NGSLTPKEALREASRKLINLFIPFLHAEEEKPHFENNQNE 246
[149][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 212 bits (540), Expect = 1e-53
Identities = 108/169 (63%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITFDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[150][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 212 bits (540), Expect = 1e-53
Identities = 110/162 (67%), Positives = 129/162 (79%), Gaps = 3/162 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASIC +GP VTAQ++ILPPSV IVDNTQHI +TEPI C+G
Sbjct: 89 MNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSVAIVDNTQHIVTLTEPIDFCVG 148
Query: 345 LQIERDRGY--RIYTLTN-FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWT 175
LQIER+RGY +I TN D Y IDA+FMPV+N NHSIH+Y NG+ E+LF EIWT
Sbjct: 149 LQIERNRGYSMKIPMPTNSHDDRGYPIDAVFMPVKNVNHSIHAYENGS--HEMLFFEIWT 206
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVT 49
NGSLTPKEAL EASR LI+LFIPFLHAEEE + E ++++ T
Sbjct: 207 NGSLTPKEALREASRKLINLFIPFLHAEEENSHLENNQNQHT 248
[151][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 211 bits (538), Expect = 2e-53
Identities = 108/169 (63%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[152][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 211 bits (538), Expect = 2e-53
Identities = 108/169 (63%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNMLPFPLSHVL 257
[153][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 211 bits (538), Expect = 2e-53
Identities = 108/169 (63%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNMLPFPLSHVL 257
[154][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 211 bits (538), Expect = 2e-53
Identities = 108/169 (63%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[155][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 211 bits (538), Expect = 2e-53
Identities = 108/169 (63%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[156][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 211 bits (538), Expect = 2e-53
Identities = 108/169 (63%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNMLPFPLSHVL 257
[157][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 211 bits (538), Expect = 2e-53
Identities = 108/169 (63%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPKNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[158][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 211 bits (538), Expect = 2e-53
Identities = 108/169 (63%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[159][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 210 bits (535), Expect = 4e-53
Identities = 111/170 (65%), Positives = 129/170 (75%), Gaps = 5/170 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+LYG RDASIC +GP VTAQ++ILP S IVDNTQHI +TEPI C+G
Sbjct: 89 MNLKEIVLRSHLYGTRDASICVRGPRDVTAQDIILPTSATIVDNTQHIVTITEPIDFCVG 148
Query: 345 LQIERDRGY--RIYTLTNFQDG-SYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWT 175
LQIER+RGY +I LTN D Y ID++FMPV+N NHSIHSY NG +LFLEIWT
Sbjct: 149 LQIERNRGYFIQIPMLTNLHDDRGYPIDSVFMPVKNVNHSIHSYENG--IHAMLFLEIWT 206
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE--YDEHKVTLPLPTC 31
NGSLTPKEAL EASR L +LFIPFLHAEE+ +FE +EH LP+ C
Sbjct: 207 NGSLTPKEALREASRKLSNLFIPFLHAEEQNFHFENNQNEHTDELPIDFC 256
[160][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 210 bits (534), Expect = 6e-53
Identities = 107/169 (63%), Positives = 131/169 (77%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+ N+SIHSY +GNE QE+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDVNYSIHSYGSGNEIQEVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[161][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 210 bits (534), Expect = 6e-53
Identities = 105/161 (65%), Positives = 130/161 (80%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+S+ YG R+ASIC GP VTAQ++ILPPSV I+D TQHIA++T+ I I
Sbjct: 89 INLKEIVLRSDPYGTREASICIVGPRNVTAQDIILPPSVRIIDATQHIASLTKSITFDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L IE+DRGYRI + N+QDG + IDA+FMPVRNAN+SIHSY NGN+ QEILFLEIWTNGS
Sbjct: 149 LWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVRNANYSIHSYGNGNDIQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLP 43
L P+EALY ASRNLIDLFIPFL AEE+ ++ +++ +P
Sbjct: 209 LAPREALYRASRNLIDLFIPFLRAEEQNIDGMDNQNGSNMP 249
[162][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 209 bits (532), Expect = 1e-52
Identities = 106/167 (63%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCH 28
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSH 255
[163][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 209 bits (532), Expect = 1e-52
Identities = 106/167 (63%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCH 28
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSH 255
[164][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 209 bits (532), Expect = 1e-52
Identities = 106/167 (63%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCH 28
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSH 255
[165][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 209 bits (532), Expect = 1e-52
Identities = 106/167 (63%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCH 28
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSH 255
[166][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 209 bits (532), Expect = 1e-52
Identities = 106/167 (63%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCH 28
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSH 255
[167][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 208 bits (529), Expect = 2e-52
Identities = 106/169 (62%), Positives = 131/169 (77%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIV +S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[168][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 208 bits (529), Expect = 2e-52
Identities = 106/169 (62%), Positives = 131/169 (77%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIV +S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[169][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 208 bits (529), Expect = 2e-52
Identities = 106/169 (62%), Positives = 131/169 (77%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIV +S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[170][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 206 bits (525), Expect = 6e-52
Identities = 105/169 (62%), Positives = 130/169 (76%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIV +S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+ N+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDVNYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[171][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 206 bits (524), Expect = 8e-52
Identities = 105/169 (62%), Positives = 130/169 (76%), Gaps = 1/169 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIV +S+ YGIR+ASI GP VTAQ++ILPPSV +D TQHIA +T+ I I
Sbjct: 89 MNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKTIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCHDL 22
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H L
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVL 257
[172][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 206 bits (523), Expect = 1e-51
Identities = 100/150 (66%), Positives = 126/150 (84%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YG+R+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGVREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIK 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN 76
LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNID 238
[173][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 205 bits (522), Expect = 1e-51
Identities = 100/150 (66%), Positives = 125/150 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITFDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN 76
LTP+EALYEASRNLID FIPFLH EE+ ++
Sbjct: 209 LTPREALYEASRNLIDFFIPFLHGEEQNID 238
[174][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 204 bits (520), Expect = 2e-51
Identities = 100/150 (66%), Positives = 125/150 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITFDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN 76
LTP+EALYEASRNLIDL IPFLH EE+ ++
Sbjct: 209 LTPREALYEASRNLIDLLIPFLHGEEQNID 238
[175][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 204 bits (520), Expect = 2e-51
Identities = 104/167 (62%), Positives = 129/167 (77%), Gaps = 1/167 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLK IVL+S+ YGI +ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKXIVLRSDSYGIXEASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTLPLPTCH 28
LTP+EALYEASRNLIDLFIPFLH EE+ ++ + LP P H
Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSH 255
[176][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 204 bits (518), Expect = 4e-51
Identities = 100/150 (66%), Positives = 125/150 (83%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN 76
LTP+EALYEASRNLIDL IPFLH EE+ ++
Sbjct: 209 LTPREALYEASRNLIDLLIPFLHGEEQNID 238
[177][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 204 bits (518), Expect = 4e-51
Identities = 111/174 (63%), Positives = 127/174 (72%), Gaps = 9/174 (5%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASIC +GP VTAQ++ILPPS IVDNTQHI +TEPI C+
Sbjct: 89 MNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSTAIVDNTQHIVTLTEPIDFCVE 148
Query: 345 LQIERDRGYRIY----TLTNFQDGSY--NIDAIFMPVRNANHSIHSYVNGNEKQEILFLE 184
L+IER RGY I T D Y IDA+FMPVRN NHSI+SY G+ +EILFLE
Sbjct: 149 LKIERGRGYSIKIPMPTNPFHHDSGYPIPIDAVFMPVRNVNHSIYSYKRGS--REILFLE 206
Query: 183 IWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK---LNFEYDEHKVTLPLPTC 31
IWTNGSLTPKEAL EASR LI+LFIPFLHAEEE L ++H LP+ +C
Sbjct: 207 IWTNGSLTPKEALREASRKLINLFIPFLHAEEENFYLLENNQNQHTEELPIDSC 260
[178][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 204 bits (518), Expect = 4e-51
Identities = 109/168 (64%), Positives = 126/168 (75%), Gaps = 5/168 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+SNLYG RDASIC +GP VTAQ++ILPPS IVDNTQHI +TEPI C+G
Sbjct: 89 MNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSTAIVDNTQHIFTLTEPIDFCVG 148
Query: 345 LQIERDRGYRIY----TLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIW 178
L+IER RGY I T D +Y IDA+FMPVRN NHSIHSY G+ E+LFLEIW
Sbjct: 149 LKIERGRGYSIKIPMPTDLFHHDSAYPIDAVFMPVRNVNHSIHSYERGS--HEMLFLEIW 206
Query: 177 TNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-EYDEHKVTLPLP 37
TNGSLTPKEAL EASR LI+L +PFLHAEEE E ++++ T LP
Sbjct: 207 TNGSLTPKEALREASRKLINLLMPFLHAEEENFYLVENNQNQDTEELP 254
[179][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 202 bits (514), Expect = 1e-50
Identities = 100/150 (66%), Positives = 124/150 (82%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR ASIC GP VTAQ++ILPPSV I+D TQHIA +T+ I I
Sbjct: 89 MNLKEIVLRSDSYGIRGASICIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG
Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN 76
LTP+EAL EASR LI+LFIPFLH EE+ ++
Sbjct: 209 LTPREALSEASRILIELFIPFLHGEEQNID 238
[180][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 202 bits (513), Expect = 2e-50
Identities = 108/170 (63%), Positives = 127/170 (74%), Gaps = 5/170 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+LYG RDASIC +GP VT+Q++ILP IVDNTQHI +TEPI C+G
Sbjct: 89 MNLKEIVLRSHLYGTRDASICVRGPRDVTSQDIILPTFATIVDNTQHIVTLTEPIDFCVG 148
Query: 345 LQIERDRGY--RIYTLTNFQDG-SYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWT 175
LQIER+RGY +I L+N D Y IDA+FMPV+N NHSIHSY NG +LFLEIWT
Sbjct: 149 LQIERNRGYFIQIPMLSNLHDDRGYPIDAVFMPVKNVNHSIHSYENG--IHAMLFLEIWT 206
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE--YDEHKVTLPLPTC 31
NGSLTPKEAL ASR LI+LFIPFLHAEE+ +FE +EH L + C
Sbjct: 207 NGSLTPKEALRGASRKLINLFIPFLHAEEQNCHFENNQNEHTDELSIDFC 256
[181][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 192 bits (487), Expect = 2e-47
Identities = 97/158 (61%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVLKSN Y + A + GP +TAQ++ILPPSV I+D TQ+IA +T+PI L I
Sbjct: 89 INLKEIVLKSNSYETQKAFLSILGPKKITAQDIILPPSVKIIDTTQYIATITKPIHLDIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+I++D GYRI DG ++IDAIFMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS
Sbjct: 149 LEIDKDCGYRIXDSVKSIDGYFSIDAIFMPIRNANYSVHSFENNNKIQEILFIEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAE-EEKLNFEYDEHK 55
+TPKEALYEASR+LIDLFIPFLH E +E +N E+K
Sbjct: 209 ITPKEALYEASRSLIDLFIPFLHTEKKETINGLKTEYK 246
[182][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 191 bits (485), Expect = 3e-47
Identities = 98/150 (65%), Positives = 119/150 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NL+ IVL+S+ YGIR+ASI GP VTAQ++ILPPSV I+D TQHIA++ E I I
Sbjct: 89 INLRGIVLQSDPYGIREASIYSVGPRDVTAQDIILPPSVRIIDTTQHIASLKESITSDIR 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
QI +DRGYRI + N +DG ++ DA+ MPVRNAN+SIHSY NGNE QEILF EIWTNGS
Sbjct: 149 SQIGKDRGYRIQSPNNSRDGIFSTDAVSMPVRNANYSIHSYGNGNEMQEILFSEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN 76
L P EALYEASRNLIDLFIPF+ AEE+ ++
Sbjct: 209 LAPGEALYEASRNLIDLFIPFMRAEEQNID 238
[183][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 189 bits (479), Expect = 1e-46
Identities = 94/149 (63%), Positives = 119/149 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SN Y + A I GP VTAQ++ILPPSV I+D TQ+IA +T+ I L I
Sbjct: 89 INLKEIVLRSNSYETQKAFISILGPKKVTAQDIILPPSVKIIDTTQYIATLTKTIHLDIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IE+D GYRI DG + IDAIFMP+RNAN+S+HS+ + N+ QEILF+EIWTNGS
Sbjct: 149 LEIEKDCGYRIQDSIKSTDGHFPIDAIFMPIRNANYSVHSFEHENKTQEILFIEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKL 79
+TPKEALYEASR+LIDLFIPFLHAE++++
Sbjct: 209 ITPKEALYEASRSLIDLFIPFLHAEKKEI 237
[184][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 188 bits (478), Expect = 2e-46
Identities = 94/148 (63%), Positives = 117/148 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVLKSN + A I GP +TAQ++ILPPSV I+D TQ+IA +T+PI L I
Sbjct: 89 INLKEIVLKSNSSETQKAFISILGPKKITAQDIILPPSVKIIDTTQYIATITKPIHLDIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IE+D GYRI DG + IDAIFMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS
Sbjct: 149 LEIEKDCGYRIQDSVKSIDGYFPIDAIFMPIRNANYSVHSFENNNKIQEILFIEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEK 82
+TPKEALYEASR+LIDLFIPFLH E+++
Sbjct: 209 ITPKEALYEASRSLIDLFIPFLHPEKKE 236
[185][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 187 bits (474), Expect = 5e-46
Identities = 93/148 (62%), Positives = 118/148 (79%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NL EIVL+S+ Y + A I GP VTAQ++ILPPSV I+D TQ+IA VT+ I L I
Sbjct: 89 INLGEIVLRSDSYETQKAFISILGPKKVTAQDIILPPSVKIIDTTQYIATVTKAIHLDIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IE+D GYRI DG++ +DA+FMP+RN N+S+HS+ NGNE QEILFLEIWTNGS
Sbjct: 149 LKIEKDFGYRIEDPIKSADGNFPVDAVFMPIRNVNYSVHSFENGNETQEILFLEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEK 82
+TPKEALYEASR+LI+LFIPFLHAE+++
Sbjct: 209 VTPKEALYEASRSLINLFIPFLHAEKKE 236
[186][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 183 bits (465), Expect = 6e-45
Identities = 88/155 (56%), Positives = 119/155 (76%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N KEIVL+S+ Y + A I GP +TA++++LPPSV +D++QHIA +T+ I L I
Sbjct: 89 INFKEIVLRSDSYETQKAYISITGPKDITAEDILLPPSVQAIDDSQHIATITKDITLDIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
++I++DRGYRI Q G + IDA+FMP+R AN+S+HS+ N + QEILF+EIWT+GS
Sbjct: 149 IEIQKDRGYRIQDSKESQAGEFFIDAVFMPIRKANYSVHSFGNNKKFQEILFIEIWTDGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDE 61
LTPKEALYEASRNLIDLF+PFLH EEE++ + DE
Sbjct: 209 LTPKEALYEASRNLIDLFLPFLHTEEEEIISDRDE 243
[187][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 180 bits (456), Expect = 6e-44
Identities = 95/157 (60%), Positives = 113/157 (71%), Gaps = 10/157 (6%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEIVL+S+ YGIR+ SI GP VTAQ+++LPPSV I+D TQHIAN+ + I L I
Sbjct: 89 MNLKEIVLRSDAYGIREGSIHVVGPKKVTAQDIMLPPSVRIIDTTQHIANINKSITLDIS 148
Query: 345 LQIERDRGYRIYTLTNFQDGS----------YNIDAIFMPVRNANHSIHSYVNGNEKQEI 196
LQIE+ RGY I N+ + IDA F PV+N N+SIHSY + NE QEI
Sbjct: 149 LQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVFPIDAAFAPVQNVNYSIHSYWSENETQEI 208
Query: 195 LFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 85
LFLEIWTNG L PKEALYEASRNLID F+PFL+A+EE
Sbjct: 209 LFLEIWTNGGLAPKEALYEASRNLIDFFLPFLNAKEE 245
[188][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 180 bits (456), Expect = 6e-44
Identities = 88/168 (52%), Positives = 122/168 (72%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVLKSN Y ++ASI GP VTA++++LP SV ++D TQHIA +T+ + I
Sbjct: 89 INLKEIVLKSNSYKTQEASISILGPKRVTAEDIVLPSSVEVIDATQHIATITKAVYFNIK 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L I +DRGYRI ++DG++ ++A F P+RNAN+S+HS+ N EKQEILF+E+WTNGS
Sbjct: 149 LGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNANYSVHSFENEKEKQEILFIEVWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDL 22
LTPKEAL EAS++LI+LFIP LH ++E+ N + + L +C L
Sbjct: 209 LTPKEALREASQSLINLFIPLLHEKKERENRKLENKDEYNVLRSCFSL 256
[189][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 178 bits (451), Expect = 2e-43
Identities = 92/160 (57%), Positives = 121/160 (75%), Gaps = 1/160 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N KEIVL+SN + A I GP +TAQ++ILPPSV I+D Q+IA +T+ IQL I
Sbjct: 89 INSKEIVLESNSSETQKAFISILGPKKITAQDIILPPSVKIIDGKQYIATLTKAIQLDIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IE+D GYRI + + IDAIFMP+RNAN+S+HS+ N N+ QE+LF+EIWTNGS
Sbjct: 149 LEIEKDYGYRIQNSNKSTNSHFFIDAIFMPIRNANYSVHSFENENKTQEMLFIEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAE-EEKLNFEYDEHKVT 49
+TPK+ALYEASR+LIDLFIPFLHAE E +N +E+K++
Sbjct: 209 ITPKDALYEASRSLIDLFIPFLHAERREIINELENEYKLS 248
[190][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 177 bits (450), Expect = 3e-43
Identities = 90/157 (57%), Positives = 119/157 (75%), Gaps = 2/157 (1%)
Frame = -2
Query: 525 MNLKEIVLKS--NLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLC 352
+NLKEIVLKS N + A + GP VTA+++I PPSV ++D TQ+IA +T+ I L
Sbjct: 90 INLKEIVLKSKSNSCETQKAFLSIFGPKEVTARDIIFPPSVEVIDTTQYIATLTKAIHLD 149
Query: 351 IGLQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTN 172
I L+IE+D GYR DG +++DA+F P+RNAN+S+HS+ N NE QEILF+EIWTN
Sbjct: 150 IELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVHSFENKNETQEILFIEIWTN 209
Query: 171 GSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDE 61
GS+TPKEALYEASR+LIDLFIPFLHAE+E++ + +E
Sbjct: 210 GSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHDKNE 246
[191][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 176 bits (446), Expect = 9e-43
Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = -2
Query: 525 MNLKEIVLKS--NLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLC 352
+NLKEIVLKS N + A + GP VTA++++ PPSV ++D TQ+IA +T+ I L
Sbjct: 90 INLKEIVLKSKSNSCETQKAFLSIFGPKEVTARDIVFPPSVEVIDTTQYIATLTKAIHLD 149
Query: 351 IGLQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTN 172
I L+IE+D GYR DG +++DA+F P+RNAN+S+HS+ N NE QEILF+EIWTN
Sbjct: 150 IELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVHSFENKNETQEILFIEIWTN 209
Query: 171 GSLTPKEALYEASRNLIDLFIPFLHAEEEKL 79
GS+TPKEALYEASR+LIDLFIPFLHAE+E++
Sbjct: 210 GSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
[192][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 165 bits (417), Expect = 2e-39
Identities = 86/160 (53%), Positives = 116/160 (72%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+S+ Y + ASI GP VTA +++LP SV I+D +QHIA +T I L +
Sbjct: 89 INLKEIVLQSDSYETQKASISILGPRDVTAGDILLPTSVKIIDASQHIATITTAIPLDVE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IERD GYR L Q G + IDA+F P+RNAN+SIHS+ + N+ +EILFLE+WTNGS
Sbjct: 149 LRIERDCGYRTLNLKESQSGEFFIDALFTPIRNANYSIHSFESNNKVREILFLEVWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTL 46
LTP AL EASR+LIDLFI FL+ E+E+ E + +++ +
Sbjct: 209 LTPGAALSEASRDLIDLFIIFLNMEKEESIKEIENNELNI 248
[193][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 162 bits (410), Expect = 1e-38
Identities = 91/173 (52%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVLKS LYGI ASIC GP VTAQ++ILP S+ I+D TQHIA++T+ + +
Sbjct: 90 LNLKEIVLKSELYGIHKASICTVGPRNVTAQDIILPSSIKIIDGTQHIASLTKSVPFNVM 149
Query: 345 LQIERDRGYRIYTLTN--FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTN 172
L IER++GY I + ++ ++G + IDA MPVRN N SIHSY + N+ +E+L EIWTN
Sbjct: 150 LTIERNQGYAIPSQSSRRHKNGLFPIDAPCMPVRNVNFSIHSYKSENDIREMLIFEIWTN 209
Query: 171 GSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAK 13
G LTP+EA YEA LIDL +P LH EE+ +N D LP+ T D L K
Sbjct: 210 GGLTPREAFYEACWKLIDLIVPLLHMEED-MNGAKD--FFALPILTRMDKLGK 259
[194][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 162 bits (410), Expect = 1e-38
Identities = 82/151 (54%), Positives = 113/151 (74%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVLKS + + A I GP +TAQ++ P + I+ Q+IA + + I L I
Sbjct: 89 INLKEIVLKSESFEPQKAYISVLGPKKITAQDIKGPSCIKIMIIAQYIATLNKDILLEIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L IE+DRGYRI L +Q+G + +DA+FMP+RNAN+S+HS+ + + +EILFLEIWT+GS
Sbjct: 149 LNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNANYSVHSFESEKKIKEILFLEIWTDGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNF 73
LTPKEALYEASRNLIDLFIP +++E+++ NF
Sbjct: 209 LTPKEALYEASRNLIDLFIPLINSEKKEKNF 239
[195][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 161 bits (408), Expect = 2e-38
Identities = 79/161 (49%), Positives = 116/161 (72%), Gaps = 1/161 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+S+ G + A + GP VTA ++ LPPSV ++D++Q+I +T+PI + I
Sbjct: 89 VNLKEIVLRSDSDGNQKAILSVTGPKRVTAGDISLPPSVKVIDDSQYIVTITQPISVNIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L IE D GYRI +L ++DG + +DA+FMPVRN N+S+H + +G E +EILF+E+WTNGS
Sbjct: 149 LNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNVNYSVHPFGSGKEMREILFIEVWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKL-NFEYDEHKVTL 46
LTP EA+ +AS++ IDL PFLH + E + +FE + +L
Sbjct: 209 LTPTEAISKASKSSIDLLSPFLHTKHEDIPDFESNRDSSSL 249
[196][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 157 bits (396), Expect = 6e-37
Identities = 77/150 (51%), Positives = 110/150 (73%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEI+L+S+ + A IC GP VTA+++ + ++DNTQ++A +T I L I
Sbjct: 90 INLKEIILRSDSPEPQKAYICVSGPSEVTARDIQGSSLIHVIDNTQYVATITGKISLDIE 149
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L IE+DRGYR+ +++G + IDA+FMP+RNAN+S+HS+ + + +EIL LEIWTNGS
Sbjct: 150 LDIEKDRGYRMENSRKYREGFFPIDAVFMPIRNANYSVHSFGSREKTKEILLLEIWTNGS 209
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN 76
LTP++ALYEASRNLIDLFIP ++ E+ N
Sbjct: 210 LTPEKALYEASRNLIDLFIPSMNPGGEEKN 239
[197][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 155 bits (393), Expect = 1e-36
Identities = 79/150 (52%), Positives = 113/150 (75%), Gaps = 1/150 (0%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKE+V++S+ + A I GPG VTA +++LPPS+ + D TQHIA +T+ + L I
Sbjct: 201 VNLKELVIRSDSDEPQKAIISAIGPGPVTAGDIVLPPSLEVTDPTQHIAYLTKEVSLDIE 260
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNG 169
L +E+ GYR+ T DG + ID++FMPVRNAN+S+HSY + + QEILFLEIWTNG
Sbjct: 261 LDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANYSVHSYESEPDVTQEILFLEIWTNG 320
Query: 168 SLTPKEALYEASRNLIDLFIPFLHAEEEKL 79
S+TP+EAL+EA+R LIDLF+PFLH +++++
Sbjct: 321 SITPEEALHEAARCLIDLFLPFLHPKKKEV 350
[198][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 154 bits (389), Expect = 4e-36
Identities = 77/155 (49%), Positives = 107/155 (69%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKE V +S+ ++A + GP VTA + LPPSV I+D++Q+I +T+PI + I
Sbjct: 89 VNLKETVPRSDSNDSKEAFLSVTGPKRVTAGDTSLPPSVKIIDDSQYIVTITQPISVNIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
+IE+D GYRI ++DG + +DA+ MPVRN N+S+H + +G E +EI F+EIWTNGS
Sbjct: 149 SRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRNVNYSVHPFGSGREMREISFIEIWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDE 61
TP EAL EAS+NLIDL IPFLH + E + DE
Sbjct: 209 PTPNEALCEASKNLIDLLIPFLHMKHEDVPHFEDE 243
[199][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 153 bits (386), Expect = 8e-36
Identities = 77/160 (48%), Positives = 110/160 (68%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLK+IVL+S LYGI +ASIC GP VTAQ++ILP S+ I+D+TQHIA++T+ I +
Sbjct: 90 MNLKQIVLRSELYGIHEASICTVGPKNVTAQDIILPSSIQIIDDTQHIASLTKRIPFNVT 149
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L+IE+ + Y I + +D + ID + +PV+N N SIHSY + + QE+L EIWTNG
Sbjct: 150 LKIEKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIHSYKSSDNIQEMLIFEIWTNGG 209
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTL 46
LTP+E +YEA +L+DL IP L E+ N + + ++L
Sbjct: 210 LTPRETIYEACWSLLDLIIPLLCVEQNIKNSQKKPNPLSL 249
[200][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 152 bits (383), Expect = 2e-35
Identities = 74/157 (47%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N KEIVLKS + A I GP VTAQ++ LP SV ++D QHIA +T+ ++L I
Sbjct: 92 INSKEIVLKSKSSEAQKAFISIVGPRRVTAQDIELPTSVEVIDPMQHIATITKKVKLNIE 151
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEK--QEILFLEIWTN 172
L+IE+D GYR + ++DG++ +DA+F P+R+ N+SIH + + ++ +E+L EIW+N
Sbjct: 152 LKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSVNYSIHCFESHDKSIMKEMLLYEIWSN 211
Query: 171 GSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDE 61
GS+TP+EA+YEASR+ I+LF+PFL AE+EK +F+ ++
Sbjct: 212 GSITPEEAIYEASRSSINLFLPFLQAEKEKEDFKGED 248
[201][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 149 bits (377), Expect = 9e-35
Identities = 82/162 (50%), Positives = 108/162 (66%), Gaps = 2/162 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLY-GIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCI 349
+NLKEIVL+ + I++A + GP VTA +L LPP V +DN+Q+IA +T+PI L I
Sbjct: 89 VNLKEIVLRGDSKEDIQEAFLSVTGPKEVTAGDLSLPPGVEAIDNSQYIATITQPISLTI 148
Query: 348 GLQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNG 169
L+IE+D GYRI L G + IDA+FMPVRN N+SIH + +G QEILF+EIWTNG
Sbjct: 149 ELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRNVNYSIHLFGSGRATQEILFIEIWTNG 208
Query: 168 SLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEYDEHKVTL 46
SLTP EAL +AS L+DL FL+ ++ FE E + L
Sbjct: 209 SLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDSLDL 250
[202][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 138 bits (348), Expect = 2e-31
Identities = 76/146 (52%), Positives = 101/146 (69%), Gaps = 3/146 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGI-RDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCI 349
MNLKEIVLK+N + ++A I GP VTAQ+++LPPSV +D TQHIA +T I I
Sbjct: 89 MNLKEIVLKTNPFSAAQEAHIPIVGPRKVTAQDIVLPPSVGTMDPTQHIATITRKIHSSI 148
Query: 348 GLQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVN--GNEKQEILFLEIWT 175
GL++ER G+R + +Q GS DA+FMP+R+AN+SIH + G +E+L LE T
Sbjct: 149 GLRVERGCGFRKRNMIEYQKGSLPPDAVFMPIRHANYSIHRLGSHGGGIMKEMLLLEART 208
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLH 97
+GS TP+EA+YEASRNL +LF PF H
Sbjct: 209 DGSPTPREAIYEASRNLANLFSPFPH 234
[203][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 128 bits (322), Expect = 2e-28
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 7/162 (4%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIV K + I KGP +TA ++ + P + I+D+ Q IA++TEPI +
Sbjct: 86 LNLKEIVFKGVCDKTQKGFIFVKGPKKITASDIQIEPCIEILDSNQIIAHLTEPIDFKVE 145
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVN-GNEKQEILFLEIWTNG 169
L IE+ G+R+ T S++IDAIFMP+RN N+SIH G+ K E+L LEIWTNG
Sbjct: 146 LTIEKSMGFRLQNATQISKDSFSIDAIFMPIRNVNYSIHPVEKAGDWKSELLILEIWTNG 205
Query: 168 SLTPKEALYEASRNLIDLFIPFLHAEEEKL------NFEYDE 61
S+TPKEA ++AS ++++F+ ++ + ++ NFE E
Sbjct: 206 SITPKEAFHQASEKIMNIFLSLSNSSDNQIQEKSTKNFEEKE 247
[204][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 127 bits (319), Expect = 5e-28
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 5/168 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNL+EIV + L+GI A I GP VTAQ++ILPP + IVD TQHIA++T+PI L +
Sbjct: 93 MNLREIVFRCELHGIHKAYIYTVGPKNVTAQDIILPPFIQIVDGTQHIASITKPIHLHVT 152
Query: 345 LQIERDRG---YRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ--EILFLEI 181
L+IE++ G I+ +T + + +MPVR+ ++++ Y + + +IL E+
Sbjct: 153 LKIEKNWGETTESIHPITKYFTRYIPTEIFYMPVRSVTYNVYFYKDEYDIHIYDILIFEL 212
Query: 180 WTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLP 37
WTNG LTPKEALYEA LIDL IP L + L+ E K ++PLP
Sbjct: 213 WTNGELTPKEALYEACWRLIDLIIPLL--DVPLLHVEGSGVKESIPLP 258
[205][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 127 bits (318), Expect = 6e-28
Identities = 63/145 (43%), Positives = 100/145 (68%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N++++ + SN + + A I GP V A +++ PPS+V+ D +Q+IA VT I +
Sbjct: 190 LNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVVPDPSQNIALVTAAIPFNVE 249
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
+++E+D GYRI +G + ID++FMPV AN+S+HS+ + +EILFLEI+TNGS
Sbjct: 250 IEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFEVEDVTREILFLEIYTNGS 309
Query: 165 LTPKEALYEASRNLIDLFIPFLHAE 91
++P+EAL EA+R+LIDL +P L +E
Sbjct: 310 ISPEEALIEAARSLIDLLLPLLESE 334
[206][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 127 bits (318), Expect = 6e-28
Identities = 63/145 (43%), Positives = 100/145 (68%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N++++ + SN + + A I GP V A +++ PPS+V+ D +Q+IA VT I +
Sbjct: 277 LNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVVPDPSQNIALVTAAIPFNVE 336
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
+++E+D GYRI +G + ID++FMPV AN+S+HS+ + +EILFLEI+TNGS
Sbjct: 337 IEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFEVEDVTREILFLEIYTNGS 396
Query: 165 LTPKEALYEASRNLIDLFIPFLHAE 91
++P+EAL EA+R+LIDL +P L +E
Sbjct: 397 ISPEEALIEAARSLIDLLLPLLESE 421
[207][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 126 bits (316), Expect = 1e-27
Identities = 69/164 (42%), Positives = 98/164 (59%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLK+IV KS+ ++ + F GPG VTAQ++ LPP V +VDNTQ+IA + P + I
Sbjct: 86 LNLKDIVFKSDTLERQEGILLFNGPGIVTAQHIKLPPVVQVVDNTQYIARLEMPTSIEIH 145
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
+ +E + G + +DA PVRN N+SIHS G+ +QE+L LE+WTNGS
Sbjct: 146 ITLENTKTCTSLNTMPTTKGRFILDAALKPVRNMNYSIHSLGEGDMRQEMLVLEVWTNGS 205
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPT 34
LTP+E + +AS+NL DL P L E + + HK + PT
Sbjct: 206 LTPQEVISQASQNLNDLLKPLLKV-ERYFQAKQNIHKKRMFTPT 248
[208][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 122 bits (306), Expect = 2e-26
Identities = 61/158 (38%), Positives = 100/158 (63%), Gaps = 3/158 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLK+I+L S+ GI + + GP V A +L LP + IV+ Q+IA V +PI +
Sbjct: 89 INLKKIILSSSFSGIFEGFLSVVGPKTVLASDLNLPSFIKIVNPDQYIATVNKPINFNLQ 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
+ I++ +GY + + + G + +D +F+P+R+ N+SIHS+ + +E L +E+WTNGS
Sbjct: 149 IYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSVNYSIHSFEDEKATKEFLIVEVWTNGS 208
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEEKLN---FEYDE 61
+ PKEA+ EAS NL++LF P + E ++L F+ DE
Sbjct: 209 IEPKEAIKEASYNLVNLFTPLVSQEYQQLKNQLFKEDE 246
[209][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 118 bits (295), Expect = 3e-25
Identities = 62/147 (42%), Positives = 92/147 (62%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLK++++K+ + + I GP VTA ++ L ++ I + HIA +T+PI+ +
Sbjct: 91 LNLKQVIIKNKICEFQKCLISIIGPKKVTAADIELSQNITISNPYHHIATITKPIRFQVE 150
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 166
L I + RGY I + QDG + +DA+F PVRN N SIH N E+QE L LEIWTNG+
Sbjct: 151 LIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNFSIH---NLAEQQEALILEIWTNGA 207
Query: 165 LTPKEALYEASRNLIDLFIPFLHAEEE 85
+TP +AL + S NLI LF+P E++
Sbjct: 208 ITPLDALRQGSENLIHLFLPPFGLEDD 234
[210][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 113 bits (282), Expect = 9e-24
Identities = 64/135 (47%), Positives = 86/135 (63%), Gaps = 5/135 (3%)
Frame = -2
Query: 522 NLKEIVLKSNLYG-IRDASICFKGPGYVTAQNLILPPSVVIVDNTQH----IANVTEPIQ 358
N K + + S+ G + D + K GY L L + ++ N + IA + +PI
Sbjct: 14 NNKMLFVTSSFVGWLIDHILFMKWSGYDKILLLDLMYLLDLISNNNYSTILIARLKKPID 73
Query: 357 LCIGLQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIW 178
LCIGLQI+R+ Y + NFQDGSY ID +FM V+NANH+IH Y N NE+QEILFL++W
Sbjct: 74 LCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNANHNIHFYGNVNERQEILFLKLW 133
Query: 177 TNGSLTPKEALYEAS 133
TN +LTPKEA +EAS
Sbjct: 134 TNKNLTPKEAFHEAS 148
[211][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 112 bits (280), Expect = 2e-23
Identities = 57/106 (53%), Positives = 75/106 (70%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N KEIVLKSN Y + A I GP +TAQ++ILPPSV I+D TQ+IA +T+ I L I
Sbjct: 89 INSKEIVLKSNSYETQKAFISILGPKKITAQDIILPPSVKIIDTTQYIATLTKAIHLDIE 148
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE 208
+IE+D GYRI DG + +DA+FMP+RNAN+SIHS+ N N+
Sbjct: 149 SEIEKDCGYRIQDSKKSTDGLFFVDAVFMPIRNANYSIHSFENKNK 194
[212][TOP]
>UniRef100_Q33616 Orf protein (Fragment) n=1 Tax=Musa balbisiana RepID=Q33616_MUSBA
Length = 67
Score = 109 bits (272), Expect = 1e-22
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL+SN+YG+RDASIC +GP YVTAQ++I PPSV IVD TQHIAN+TEPI LCIG
Sbjct: 2 LNLKEIVLRSNIYGVRDASICARGPKYVTAQDIISPPSVEIVDTTQHIANLTEPIDLCIG 61
Query: 345 LQIERD 328
LQI RD
Sbjct: 62 LQIRRD 67
[213][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 102 bits (255), Expect = 1e-20
Identities = 45/61 (73%), Positives = 56/61 (91%)
Frame = -2
Query: 264 FMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 85
FMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+L DLFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
Query: 84 K 82
+
Sbjct: 61 E 61
[214][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 102 bits (255), Expect = 1e-20
Identities = 58/144 (40%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KE+VL+SN + + +GPG VTA+ L LP V +++ HIA + E L +
Sbjct: 98 LNMKELVLRSNAPDTQVGRLVAQGPGEVTAEKLQLPSEVEVINPRHHIATLAEGAILEME 157
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIW 178
I R RGYR ++ + + + ID++FMPVR N+++ + V + +++ L LEIW
Sbjct: 158 FMIGRGRGYRAVDYSDSKSMAIDFLQIDSVFMPVRKVNYTVEAARVGQSLEKDRLILEIW 217
Query: 177 TNGSLTPKEALYEASRNLIDLFIP 106
TNGSLTP+EAL +A+R L+ LF P
Sbjct: 218 TNGSLTPQEALSQAARILVGLFSP 241
[215][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 100 bits (250), Expect = 5e-20
Identities = 58/144 (40%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVL S + + +GP VTA + LP V +VD Q+IA ++ L +
Sbjct: 80 LNLKEIVLNSYSNQRQIGRLLVQGPATVTAGHFDLPSEVEVVDKNQYIATLSPGSTLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIW 178
Q+E+ GYR + + + IDA+FMPVR N+++ + V G+ +++ L L+IW
Sbjct: 140 FQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPVRKVNYTVEDARVGGSLEKDRLILDIW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIP 106
TNGSLTP+EAL +A+ L+DLF+P
Sbjct: 200 TNGSLTPQEALSQAATILVDLFVP 223
[216][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 99.4 bits (246), Expect = 1e-19
Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
MNLKEI L ++ ++A I GPG V A++ + P S+ I+ QH A VT I+ G
Sbjct: 88 MNLKEIALTAHPSAAQEAHIPIVGPGKVAARDTVPPSSIGIIYPAQHAATVTRKIRSSTG 147
Query: 345 LQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYV--NGNEKQEILFLEIWTN 172
++E GYR + +Q GS DA+ MP+RNAN+SIH +G +E+ E T+
Sbjct: 148 SRVEGGCGYRRRNMVEYQKGSPPPDAVSMPIRNANYSIHRLESHSGGIMKEMPPPEARTD 207
Query: 171 GSLTPKEALYEASRNLIDLFIP 106
GS TP EA YEASR+ +LF P
Sbjct: 208 GSPTPGEATYEASRDSANLFSP 229
[217][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 99.4 bits (246), Expect = 1e-19
Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 12/157 (7%)
Frame = -2
Query: 525 MNLKEIVLKSNL--------YGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVT 370
+NLK+IV+K + ASI +GPG VTA+++ P S++ VD Q IA +
Sbjct: 89 LNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGVVTAEHIKFPSSILAVDPDQSIATLL 148
Query: 369 EPIQLCIGLQIERDRGYRIYTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILF 190
QLCI L I + ++ T T + IDA F PV+ AN SIHS + Q++L
Sbjct: 149 NETQLCIELFIRQGIAKQL-TRTKKNHQGFFIDANFTPVQKANFSIHSVGDPKGLQQLLL 207
Query: 189 LEIWTNGSLTPKEALYEASRNLIDLF----IPFLHAE 91
LEIWTN +LTP EALY+A +L++LF P LH E
Sbjct: 208 LEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[218][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 98.6 bits (244), Expect = 2e-19
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 6/161 (3%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KEI+LKS + + GP V A LP V IVD Q++A + E +L +
Sbjct: 80 LNMKEIILKSYTNQTQIGRLVATGPATVVAAQFDLPSEVEIVDRNQYVATLAEGAKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIW 178
++E+ +GYR + + S + ID+IFMPV N+S+ + ++ L LEIW
Sbjct: 140 FRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPVTKVNYSVEDIRSESGQARDRLLLEIW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIPF--LHAEEEKLNFEYDE 61
TNGS+ PKEAL +A+ L++LF P L+A E NF+ E
Sbjct: 200 TNGSINPKEALSQAADMLVNLFNPLKDLNALESSSNFDDQE 240
[219][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 98.2 bits (243), Expect = 3e-19
Identities = 65/158 (41%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLK IVLKS ++ + KGP VTA + LP V IV+ +IA +T L I
Sbjct: 80 LNLKGIVLKSKTNDLKFGRLKIKGPAVVTANCIQLPSEVEIVNPNHYIATITTSNVLEIE 139
Query: 345 LQIERDRGYRI--YTLTNFQDGSYNIDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWT 175
+IE GY++ T IDAIFMPV+ + I + Y N N+ E LFL+IWT
Sbjct: 140 FKIESGTGYKLAGQTFCKKSQDYLQIDAIFMPVQKVDFKIENIYDNSNDLTERLFLDIWT 199
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDE 61
NGS++P+EA+ ASR +I F L E KL E E
Sbjct: 200 NGSMSPEEAVSSASRFIISFFSSLL---ENKLPQETKE 234
[220][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 98.2 bits (243), Expect = 3e-19
Identities = 61/145 (42%), Positives = 89/145 (61%), Gaps = 5/145 (3%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KE+VL+S I+ + +GP VTA +L LP V +V +IA + E QL +
Sbjct: 80 LNMKELVLRSYTSDIQIGRLAVQGPKRVTAADLELPTEVQVVHPRHYIATLAEDGQLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGS----YNIDAIFMPVRNANHSIHSYVN-GNEKQEILFLEI 181
QIER +GYR +DG+ +IDAIFMPVR N ++ S + N +Q+ L LEI
Sbjct: 140 FQIERGKGYRAIE-RGSEDGAAIDYLSIDAIFMPVRKVNWTVESERSAANVEQDRLTLEI 198
Query: 180 WTNGSLTPKEALYEASRNLIDLFIP 106
WT+GSL+P+EAL +A++ L+D P
Sbjct: 199 WTSGSLSPQEALSQAAKILVDQLRP 223
[221][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 98.2 bits (243), Expect = 3e-19
Identities = 55/144 (38%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
M +KE++LKS + + GP +TA + LP V ++D TQ++A + E +L +
Sbjct: 80 MRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEVIDPTQYVATIAEGGKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIW 178
+IER +GYR + S + ID+IFMPVR N+S+ +G+ ++ L LE+W
Sbjct: 140 FRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEVW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIP 106
TNGS++P+EAL A+ L+DLF P
Sbjct: 200 TNGSISPQEALSSAAGILVDLFNP 223
[222][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 98.2 bits (243), Expect = 3e-19
Identities = 55/144 (38%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
M +KE++LKS + + GP +TA + LP V ++D TQ++A + E +L +
Sbjct: 80 MRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEVIDPTQYVATIAEGGKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIW 178
+IER +GYR + S + ID+IFMPVR N+S+ +G+ ++ L LE+W
Sbjct: 140 FRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEVW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIP 106
TNGS++P+EAL A+ L+DLF P
Sbjct: 200 TNGSISPQEALSSAAGILVDLFNP 223
[223][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 97.4 bits (241), Expect = 5e-19
Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KEI+LKS + + + GPG VTA LP V +VD TQ+IA + + +L +
Sbjct: 80 LNMKEIILKSYTHQPQIGRLTATGPGQVTAAQFDLPSEVEVVDPTQYIATLADGAKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIW 178
+IE+ + YR + + + IDA+FMPV N+S+ S + G+ ++ L LEIW
Sbjct: 140 FRIEKGKSYRAVQRNRDEATALDFLQIDAVFMPVTKVNYSVDSIHSEGDAVRDRLTLEIW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDE 61
TNGS+ P+EAL +A+ ++LF P E + E E
Sbjct: 200 TNGSIKPEEALSQAAAIAVELFNPLKDLTLEAIQDELQE 238
[224][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 97.4 bits (241), Expect = 5e-19
Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KEI LKS + + GP VTA LP V IVD +Q++A + E +L +
Sbjct: 80 LNMKEITLKSYTSQPQIGRLVATGPATVTAGQFDLPSEVEIVDPSQYVATLAEGSKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGS-----YNIDAIFMPVRNANHSIHSY-VNGNEKQEILFLE 184
+IE+ +GYR + +D S ID++FMPV N+S+ V+G ++ L +E
Sbjct: 140 FRIEKGKGYR--AIERGKDDSTSLDFLQIDSVFMPVTKVNYSVEDVRVDGTSSKDRLTIE 197
Query: 183 IWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 88
IWTNGS+ PKEAL EA+ ++DLF P E
Sbjct: 198 IWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[225][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 97.4 bits (241), Expect = 5e-19
Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLK IVLKS + + +G VT N LP V I+ TQ++A V E L +
Sbjct: 80 LNLKNIVLKSYTNEPQIGRLKIQGACKVTTANFELPSEVEIIHGTQYVATVAENAILEME 139
Query: 345 LQIERDRGYRIYTLTNFQDG--SYNIDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWT 175
+IE+ RGY+I ++ IDAIFMPVR N+ + ++ +E +E L LEIW
Sbjct: 140 FKIEKGRGYKIIDKKQTENSIDFLPIDAIFMPVRKVNYMVEEIFLRNSEIKERLILEIWR 199
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 70
NGS+TP++++ +A+ L++LF PF +K+NFE
Sbjct: 200 NGSVTPQDSISQAAEVLLNLFNPF-----KKINFE 229
[226][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 96.7 bits (239), Expect = 9e-19
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 6/161 (3%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KEI LKS + + GP V A LP V IVD Q++A + E +L +
Sbjct: 80 LNMKEITLKSYTNQTQIGRLVATGPATVVAAQFDLPSEVEIVDRNQYVATLAEGAKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIW 178
++E+ +GYR + + S + ID+IFMPV N+S+ + ++ L LEIW
Sbjct: 140 FRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPVTKVNYSVEDIRSESGQARDRLLLEIW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIPF--LHAEEEKLNFEYDE 61
TNGS+ PKEAL +A+ L++LF P L+A E NF+ E
Sbjct: 200 TNGSINPKEALSQAADMLVNLFNPLKDLNALESSGNFDDQE 240
[227][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 96.3 bits (238), Expect = 1e-18
Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KE+VLKS G + GP V + LP V VD Q+IA + + +L +
Sbjct: 80 LNMKEVVLKSYTPGPHIGRVMITGPSTVRSAQFDLPSDVEFVDPGQYIATLADGAKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIW 178
+IER +GYR + S + +DA+FMPV N+S+ + V+G+ +++ L L++W
Sbjct: 140 FRIERGKGYRSVERGRDETSSVDFLQLDAVFMPVTKVNYSVEDTRVDGSLEKDRLILDVW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIPFLHAE 91
TNGS++P+EAL +A+ L+DLF P E
Sbjct: 200 TNGSVSPQEALSQAANILVDLFNPLKDIE 228
[228][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 96.3 bits (238), Expect = 1e-18
Identities = 56/144 (38%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KE+VL+S+ + + +GPG VTA+ L LP V +++ HIA + E L +
Sbjct: 100 LNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEVINPRHHIATLAEGAILEME 159
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVNGN-EKQEILFLEIW 178
I R GYR ++ + + + ID++FMPVR N+++ + G +++ L LEIW
Sbjct: 160 FMIGRGHGYRAVDYSDSKAMAIDFLQIDSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIW 219
Query: 177 TNGSLTPKEALYEASRNLIDLFIP 106
TNGSLTP+EAL +A+R L+ LF P
Sbjct: 220 TNGSLTPQEALSQAARILVGLFAP 243
[229][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 95.9 bits (237), Expect = 2e-18
Identities = 58/144 (40%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKE VLKS+ Y + + +GP VT + LP V +V+ Q+IA ++ L +
Sbjct: 80 LNLKEAVLKSHTYQKQIGRLLVQGPATVTVGHFDLPSEVEVVNKNQYIATLSPGATLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGS-----YNIDAIFMPVRNANHSIHSYVNGNE-KQEILFLE 184
QIE+ GYR + +D S IDAIFMPVR N+++ +G +++ L LE
Sbjct: 140 CQIEKGTGYR--AVDRHRDDSAALDFLQIDAIFMPVRKVNYTVEDARDGGSLEKDRLTLE 197
Query: 183 IWTNGSLTPKEALYEASRNLIDLF 112
IWT+GSLTP+EA+ +A+ L+DLF
Sbjct: 198 IWTSGSLTPQEAISQAAAILVDLF 221
[230][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 95.9 bits (237), Expect = 2e-18
Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLK +V+KS I + KGP VTA ++ LPP++ I++ +IA ++ L I
Sbjct: 82 LNLKGVVVKSATPDISFGRLKIKGPAVVTADSIQLPPNIEIINPNHYIATISTSNVLEIE 141
Query: 345 LQIERDRGYRI--YTLTNFQDGSYNIDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWT 175
+ ER GY++ T + + IDAIFMP++ + I + Y N N E LFL+IWT
Sbjct: 142 FKFERGTGYKLAGQTFCDKSEDFLQIDAIFMPIQKVDFKIENVYDNSNSITERLFLDIWT 201
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKVTLPLPTCHDLLAKTKL 4
NGS++P +A+ AS+ +I+ F L E+K+T L D + T+L
Sbjct: 202 NGSISPDDAISYASKFIIEFFNSLL------------ENKITQNLEIIEDTNSLTQL 246
[231][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 95.9 bits (237), Expect = 2e-18
Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 5/160 (3%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KE+VLKS + + GPG VTA +P V ++D Q+IA + E +L +
Sbjct: 80 LNMKELVLKSYTDQPQIGRLTAIGPGTVTAAQFEVPSEVEVIDPNQYIATLAEGAKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIW 178
++ER GYR+ ++ S + ID++FMPV N+++ +G ++ L L+IW
Sbjct: 140 FRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKVNYTVEDIRADGMSPKDRLILDIW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIPFLHAEE-EKLNFEYDE 61
TNGS+ P+EAL EAS + +LFIP E E + +Y +
Sbjct: 200 TNGSIQPREALSEASDIIANLFIPLKDLNELEAAHSDYQD 239
[232][TOP]
>UniRef100_B4WHD8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7335 RepID=B4WHD8_9SYNE
Length = 315
Score = 95.1 bits (235), Expect = 3e-18
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 5/168 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KE VLKS + + +GP VTA N LP V ++ ++IA+V +L +
Sbjct: 80 LNMKETVLKSYSAQPQIGRLVVQGPAKVTAANFDLPSEVELISTDRYIASVAAGHKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGS---YNIDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIW 178
+IER +GY+ + + G IDA+FMPVR N+S+ ++++ ++ L +EIW
Sbjct: 140 FRIERGKGYKAIDRSREETGGVEFMQIDAVFMPVRKVNYSVENFIDPEGFPKDRLVMEIW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLNFEYDEHKVTLPLP 37
TNGSLT ++A+ EA+ L+D+F P E K + + E T +P
Sbjct: 200 TNGSLTAQQAMSEAAALLVDMFNPLKDVTLEPKRDEDTKEEDPTYQIP 247
[233][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 94.7 bits (234), Expect = 3e-18
Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KEI LKS + + GP VTA +P + +VD +Q++A +++ +L +
Sbjct: 80 LNMKEITLKSYTSQPQIGRLVATGPATVTAAQFDVPSEIEVVDPSQYVATLSDGSKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIW 178
++E+ +GYR S + ID++FMPV N+S+ V+G ++ L LEIW
Sbjct: 140 FRVEKGKGYRAIERGKDDTTSLDFLQIDSVFMPVTKVNYSVEDVRVDGTGSKDRLTLEIW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIPFLHAEE 88
TNGS+ PKEAL EA+ ++DLF P E
Sbjct: 200 TNGSINPKEALSEAAAIIVDLFSPLKDLNE 229
[234][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 94.7 bits (234), Expect = 3e-18
Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 3/143 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
M +KE++LK+ + + GP VTA + LP V ++D TQ++A + + +L +
Sbjct: 80 MRMKEVILKNYSSQPQIGRLLVNGPVTVTAAHFDLPSEVEVIDPTQYVATIADGGKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWT 175
+IER +GYR + S + ID++FMPVR N+S+ ++ L LE+WT
Sbjct: 140 FRIERGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYSVEEARGDGSLKDRLLLEVWT 199
Query: 174 NGSLTPKEALYEASRNLIDLFIP 106
NGS++P+EAL A+ L+DLF P
Sbjct: 200 NGSISPQEALSSAAGILVDLFNP 222
[235][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 94.4 bits (233), Expect = 4e-18
Identities = 61/146 (41%), Positives = 82/146 (56%), Gaps = 6/146 (4%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KEIVLKS + + G VTA N LP V +VD TQ++A +TE +L +
Sbjct: 82 LNMKEIVLKSYSDQAQIGRLVATSAGTVTAANFELPSEVEVVDPTQYVATLTEGSKLEME 141
Query: 345 LQIERDRGYRIYTLTNFQDGS----YNIDAIFMPVRNANHSIHSYVNGN--EKQEILFLE 184
+IE GY+ DG+ IDA+FMPV N+ + + G E Q+ L LE
Sbjct: 142 FRIETGTGYKGVERGK-DDGTSLDFLEIDAVFMPVTKVNYIVED-IRGEHGEAQDRLILE 199
Query: 183 IWTNGSLTPKEALYEASRNLIDLFIP 106
IWTNGS PKEAL EA+ ++DLF P
Sbjct: 200 IWTNGSFNPKEALSEAAEIVVDLFSP 225
[236][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 93.2 bits (230), Expect = 1e-17
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIVLK+ + + +GP V A++L LP S+ +VD Q+IA ++ + L +
Sbjct: 85 LNLKEIVLKTQSQETQRGHLSVQGPSTVLARDLQLPSSIELVDPDQYIATISGRVSLNME 144
Query: 345 LQIERDRGYRIYTLTN---FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWT 175
+E +GY++ FQ IDA+FMPV N+++ G+ QE + +E+WT
Sbjct: 145 FTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFMPVTKVNYTVEENYGGDRSQERVIIEVWT 204
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHA---EEEKLNFEYD 64
NGS+ ++A+ + +I+LF P + E E L E D
Sbjct: 205 NGSINSRQAIDLSVNKIINLFSPLQNVRSIEHEPLVKEKD 244
[237][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 92.8 bits (229), Expect = 1e-17
Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
M +KE++LK+ + + GP +TA + LP V ++D TQ++A + E +L +
Sbjct: 80 MRMKEVILKNYSSQPQIGRLLVSGPTTITAAHFDLPSEVEVIDPTQYVATIAEGGKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSI-HSYVNGNEKQEILFLEIW 178
+IE+ +GYR + S + ID+IFMPVR N+S+ S G ++ L LE+W
Sbjct: 140 FRIEKGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEESRGEGLIPKDRLLLEVW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIP 106
TNGS++P+EAL A+ L+DLF P
Sbjct: 200 TNGSISPQEALSSAAGILVDLFNP 223
[238][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 92.8 bits (229), Expect = 1e-17
Identities = 55/169 (32%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+K++VL+S+ + + +GP VT + LP V IV+ TQ++A ++ L +
Sbjct: 80 LNMKQVVLRSHTNDPQIGRLFVQGPATVTTDDFELPTEVEIVNPTQYVATLSSDATLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIW 178
+IE+ +GY + + + IDAI+MPVR N+ + + V G +++ L L+IW
Sbjct: 140 FRIEQGKGYHAVGKNRDEAAALDFLEIDAIYMPVRRVNYEVEDARVGGALEKDRLILDIW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIPFLHAE---EEKLNFEYDEHKVTLPL 40
TNG+LTP+E+L +A+ L+DLF P A E + E ++ +P+
Sbjct: 200 TNGNLTPQESLSQAATILVDLFNPLKDATFNVVEDIELEEEDETNQIPI 248
[239][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 92.4 bits (228), Expect = 2e-17
Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIV ++ ++ + +GP V A NL LP S+ +VD Q+IA ++ L +
Sbjct: 85 LNLKEIVFRTKSLDVQKGYLSIQGPCVVKAANLQLPTSIEVVDGGQYIATLSGNANLDME 144
Query: 345 LQIERDRGYRI--YTLT-NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWT 175
I +GY++ Y + N S +DAIFMP+ N+ + E + LEIWT
Sbjct: 145 FVINTGKGYQMADYAIKKNSYISSLPVDAIFMPIHKVNYMVEQDHTSKFLTERVILEIWT 204
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAEEE 85
NGS++P++AL + +IDLF P H E
Sbjct: 205 NGSISPRDALDIGIKKVIDLFNPLHHCSSE 234
[240][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 91.7 bits (226), Expect = 3e-17
Identities = 59/145 (40%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KEIVLKS + + G +VTA LP V +V+ TQ IA +TE +L +
Sbjct: 80 LNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFELPSEVEVVNPTQPIATLTEGAKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVNG--NEKQEILFLEI 181
+IE+ GY ++ + + + IDA+FMPV N+S+ S + G E ++ L LEI
Sbjct: 140 FRIEKGVGYVPVERSSEEPAALDFLQIDAVFMPVTKVNYSVES-IRGEEGEAKDRLMLEI 198
Query: 180 WTNGSLTPKEALYEASRNLIDLFIP 106
WTNGS PKEAL +A+ L+DLF P
Sbjct: 199 WTNGSFNPKEALSKAADILVDLFNP 223
[241][TOP]
>UniRef100_Q6J225 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassiosira sp.
Cleve BA153110 RepID=Q6J225_9STRA
Length = 300
Score = 91.7 bits (226), Expect = 3e-17
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 4/161 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLK IVLKS + A + GP +TA ++ LPP V I++ +IA ++ L I
Sbjct: 82 LNLKGIVLKSKNSTRQFARLRLHGPAVITASSIQLPPDVEIINPNHYIATLSSSHILEIE 141
Query: 345 LQIERDRGYRIYTLTNFQDGSYNI---DAIFMPVRNANHSIHS-YVNGNEKQEILFLEIW 178
+IE YR+ T F D N DAIFMP + + + + Y N N +E +FL++W
Sbjct: 142 FKIESGHDYRLANET-FSDKLSNFIETDAIFMPDQKDDFKVENVYDNSNNVKERVFLDVW 200
Query: 177 TNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHK 55
TNGS++P++A++ AS +IDL F E K+N E + K
Sbjct: 201 TNGSISPEQAIFSASNLIIDL---FKSITEHKINQEKESIK 238
[242][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 90.9 bits (224), Expect = 5e-17
Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLK IVLK N+ + + +GP VT+ + P + +VD Q+IA ++ L +
Sbjct: 84 LNLKNIVLKGNVLKNQIGRLKVQGPAIVTSGQIEFPLDITVVDPCQYIATISGNDYLEME 143
Query: 345 LQIERDRGYRIYTLTNFQDGS----YNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIW 178
L++E+ GY++ + F S ID+IFMPV+ N+ + ++ E L LE+W
Sbjct: 144 LKVEKSSGYKL--VETFSKKSPLDFLPIDSIFMPVKKVNYYVEEILDSKVAYEKLILELW 201
Query: 177 TNGSLTPKEALYEASRNLIDLFIP 106
TNGSL+P++++ AS NL+ LF P
Sbjct: 202 TNGSLSPQQSINYASDNLVKLFNP 225
[243][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 90.1 bits (222), Expect = 8e-17
Identities = 58/145 (40%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KEIVLKS + + G +VTA LP V +++ TQ IA +TE +L +
Sbjct: 80 LNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFDLPSEVEVINPTQPIATLTEGAKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVNG--NEKQEILFLEI 181
+IE+ GY ++ + + + IDA+FMPV N+S+ S + G E ++ L LEI
Sbjct: 140 FRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYSVES-IRGEEGEAKDRLMLEI 198
Query: 180 WTNGSLTPKEALYEASRNLIDLFIP 106
WTNGS PKEAL A+ L+DLF P
Sbjct: 199 WTNGSFNPKEALSRAADILVDLFNP 223
[244][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 89.7 bits (221), Expect = 1e-16
Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+ +KE+VL+S + + +GP VTA N + P V +++ +IA ++ L +
Sbjct: 79 LRMKELVLRSYSPDPQIGRLFIQGPATVTAINFEVSPDVEVINLDHYIATLSADATLEME 138
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVNGN-EKQEILFLEIW 178
+IE+ +GYR + S + IDAIFMPVR N+++ +G +++ L LEIW
Sbjct: 139 FKIEQGKGYRAIERGKDESASLDFLQIDAIFMPVRKVNYTVEDARSGGLVEKDRLVLEIW 198
Query: 177 TNGSLTPKEALYEASRNLIDLF-----IPFLHAEEEKLNFEYDEHKVTL 46
TNGSLTP+EAL + + L+DLF +PF +E E + +++ +
Sbjct: 199 TNGSLTPQEALNQGASILVDLFNPLKDVPFRSSEPSHSTEEDETNQIPI 247
[245][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 89.7 bits (221), Expect = 1e-16
Identities = 58/145 (40%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KEIVLKS + + G +VTA LP V +++ TQ IA +TE +L +
Sbjct: 80 LNMKEIVLKSYTDQPQIGRLVATGAAHVTAGQFDLPSEVEVINPTQPIATLTEGAKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVNGNEKQ--EILFLEI 181
+IE+ GY ++ + + + IDA+FMPV N+S+ S + G E + + L LEI
Sbjct: 140 FRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYSVES-IRGEEGEAKDRLMLEI 198
Query: 180 WTNGSLTPKEALYEASRNLIDLFIP 106
WTNGS PKEAL A+ L+DLF P
Sbjct: 199 WTNGSFNPKEALSRAADILVDLFNP 223
[246][TOP]
>UniRef100_Q110D1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Trichodesmium
erythraeum IMS101 RepID=RPOA_TRIEI
Length = 314
Score = 89.4 bits (220), Expect = 1e-16
Identities = 52/144 (36%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+N+KE+VLKS + + +GP VTA +P V ++D +Q+IA ++ L +
Sbjct: 80 LNMKEVVLKSYSEQPQIGRLRVEGPATVTADRFDVPSEVEVIDRSQYIATLSPGSILEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIW 178
+IE+ GY+ T + + IDAIFMPVR N++I +++ + +Q+ L ++IW
Sbjct: 140 FRIEKGTGYKAVDRTRDDVATLDFLQIDAIFMPVRKVNYTIEDAHIGSSLEQDRLIMDIW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIP 106
TNGS TP++AL A+ L+ LF P
Sbjct: 200 TNGSYTPQDALSNAAGILMSLFEP 223
[247][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 89.4 bits (220), Expect = 1e-16
Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLKEIV L + +GP VTA++ LPP + ++D Q+IA + L +
Sbjct: 80 LNLKEIVFSGQLQESTIGRLTVQGPAIVTARSFELPPEIKLIDPEQYIATICGNNTLEME 139
Query: 345 LQIERDRGYRIYTLTNFQD--GSYNIDAIFMPVRNANHSI-HSYVNGNEKQEILFLEIWT 175
+IE GY+I N + +D++FMPV+ N I + N E L L+IWT
Sbjct: 140 FKIEVGSGYKIVEKDNSTEHFEFLQVDSVFMPVKKVNFRIEETRGENNILNEQLILDIWT 199
Query: 174 NGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLNFEYDE 61
NGS++ KEA+ A+ NLI+LF P + E + ++E +E
Sbjct: 200 NGSISAKEAISNAADNLINLFSPLKTIDGESETDYETNE 238
[248][TOP]
>UniRef100_Q6J227 RNA polymerase alpha subunit (Fragment) n=1 Tax=Corethron hystrix
RepID=Q6J227_9STRA
Length = 301
Score = 89.0 bits (219), Expect = 2e-16
Identities = 49/143 (34%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Frame = -2
Query: 525 MNLKEIVLKSNLYG--IRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLC 352
+NL+ IV+K+N ++ + +GP +TA + LP + I++ Q+IA ++ + L
Sbjct: 81 LNLRPIVIKNNSDNSEMKFGRLKVQGPAVITANAIQLPTELEILNPNQYIATISRSMILE 140
Query: 351 IGLQIERDRGYRIYTLTNFQDGS--YNIDAIFMPVRNANHSIHSYVNGNEK-QEILFLEI 181
+ + E GYR+ T + S IDA+FMPV+ + + + + N+ E L ++I
Sbjct: 141 MEFKFESGIGYRLVNQTKMESSSDFLEIDAVFMPVQKVDFKVENIYDKNKHISENLIIDI 200
Query: 180 WTNGSLTPKEALYEASRNLIDLF 112
WTNGS++P+ ALYE+S N+I+LF
Sbjct: 201 WTNGSISPETALYESSNNIIELF 223
[249][TOP]
>UniRef100_Q6J223 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cylindrotheca
fusiformis RepID=Q6J223_CYLFU
Length = 291
Score = 89.0 bits (219), Expect = 2e-16
Identities = 61/162 (37%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
+NLK IVLKS + + +GP VTA + LP + IV+ ++ ++ L I
Sbjct: 72 LNLKGIVLKSKTQTAQFGRLKIQGPTVVTADLIQLPSDLEIVNPNHYLMTISTSNVLEIE 131
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIW 178
+ E GY++ T F D S N +D IFMPV+ N I + Y N N E +FL+IW
Sbjct: 132 FKFEYGTGYKL-TSQAFLDESDNYLQLDTIFMPVQKVNFKIENVYDNNNNITEQVFLDIW 190
Query: 177 TNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEYDEHKV 52
TNGS++P EAL A++ IDLF L +E K + + KV
Sbjct: 191 TNGSISPNEALKSAAQITIDLFELLLKNKETKEKNKLEATKV 232
[250][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 88.6 bits (218), Expect = 2e-16
Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Frame = -2
Query: 525 MNLKEIVLKSNLYGIRDASICFKGPGYVTAQNLILPPSVVIVDNTQHIANVTEPIQLCIG 346
M +KE++L+S + + GP VT + LP V ++D TQ++A + E +L +
Sbjct: 80 MKMKEVILRSYSSQPQIGRLLVNGPATVTVAHFDLPSEVEVIDQTQYVATLAEGGKLEME 139
Query: 345 LQIERDRGYRIYTLTNFQDGSYN---IDAIFMPVRNANHSI-HSYVNGNEKQEILFLEIW 178
+IE+ +GYR + S + ID++FMPVR N+S+ + + ++ L LE+W
Sbjct: 140 FRIEKGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYSVEEARGESSIPKDRLLLEVW 199
Query: 177 TNGSLTPKEALYEASRNLIDLFIP 106
TNGS++P+EAL A+ L++LF P
Sbjct: 200 TNGSISPQEALSSAAGILVELFNP 223