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[1][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 408 bits (1048), Expect = e-112
Identities = 201/202 (99%), Positives = 201/202 (99%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ
Sbjct: 60 TCITRAKSEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV
Sbjct: 120 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF
Sbjct: 180 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENNEHKVTLPLFTCHDLLAKTK
Sbjct: 240 ENNEHKVTLPLFTCHDLLAKTK 261
[2][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 364 bits (935), Expect = 3e-99
Identities = 180/202 (89%), Positives = 185/202 (91%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE +HEILMNLKEIVLKSNLYG RDASICFKGPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIAN+TEPI LCI LQIER RGYRI TL N QDGSY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE LNF
Sbjct: 180 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+HKVTLPLFT HD L K K
Sbjct: 240 ENNQHKVTLPLFTFHDRLLKDK 261
[3][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 360 bits (924), Expect = 5e-98
Identities = 175/202 (86%), Positives = 185/202 (91%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EKI HEYSTI+GI+E VHEILMNLKEIVL+SNLYG RDASICFKGPGYVTAQ
Sbjct: 60 TCITRVKLEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY IDA FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N
Sbjct: 180 RNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+HKVTLPLFT HD+LAK K
Sbjct: 240 ENNQHKVTLPLFTFHDILAKEK 261
[4][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 359 bits (922), Expect = 8e-98
Identities = 175/202 (86%), Positives = 185/202 (91%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EKI HEYSTI+GI+E VHEILMNLKEIVL+SNLYG RDASICFKGPGYVTAQ
Sbjct: 60 TCITRVKSEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY IDA FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N
Sbjct: 180 RNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+HKVTLPLFT HD+LAK K
Sbjct: 240 ENNQHKVTLPLFTFHDILAKEK 261
[5][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 347 bits (891), Expect = 3e-94
Identities = 170/196 (86%), Positives = 181/196 (92%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE +HEILMNLKEIVL+SNLYG R+ASICFKGPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTREASICFKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILP SV ++DNTQHIAN+TEPI LCI LQIER RGYRI TL N QDGSY IDA+FMPV
Sbjct: 120 DIILP-SVEVIDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPV 178
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSYVNGN+KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE LNF
Sbjct: 179 RNANHSIHSYVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNF 238
Query: 68 ENNEHKVTLPLFTCHD 21
ENN+HK+TLPLFT HD
Sbjct: 239 ENNQHKMTLPLFTFHD 254
[6][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 344 bits (882), Expect = 4e-93
Identities = 169/202 (83%), Positives = 181/202 (89%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE +HEILMNLKEIVL+SNLYG RDASICFKGPG VTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGSVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIAN+TEPI LC+ L++ER+RGYRI TL N QD SY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+KLN
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+ KVTLPLFT HD K K
Sbjct: 240 ENNQQKVTLPLFTFHDRFVKDK 261
[7][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 344 bits (882), Expect = 4e-93
Identities = 171/202 (84%), Positives = 183/202 (90%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKFEKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R+ASIC KGPG VTAQ
Sbjct: 60 TCITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILP SV IVDNTQ+IAN+TEPI LCIGLQIER+RGY I T KNFQDGSY IDA+FMPV
Sbjct: 120 DIILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN++KVTLP FT HD LAK +
Sbjct: 240 ENNQYKVTLPFFTFHDRLAKLR 261
[8][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 341 bits (875), Expect = 2e-92
Identities = 166/202 (82%), Positives = 180/202 (89%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EKI HEYSTI+GI+E VHEI MNLKEIVLKSN+YG +DASI FKGPGY+TAQ
Sbjct: 60 TCITRVKSEKIPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGTQDASISFKGPGYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDN QHIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY+IDA FMPV
Sbjct: 120 DIILPPSVEIVDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS+NLIDLFIPFLHAEEE N
Sbjct: 180 RNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E +HKVTLPLFT HD+L K K
Sbjct: 240 EKKKHKVTLPLFTFHDILVKDK 261
[9][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 338 bits (867), Expect = 2e-91
Identities = 164/202 (81%), Positives = 181/202 (89%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT K EKI HEYSTI+GI+E VHEI MNLKEIVLKSN+YGI+DASI FKGPGY+TAQ
Sbjct: 60 TCITCVKSEKIPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGIQDASISFKGPGYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDN QHIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY+IDA FMPV
Sbjct: 120 DIILPPSVEIVDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS+NLI+LFIPFLHAEE+ +
Sbjct: 180 RNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+HKVTLPLFT HD+L K K
Sbjct: 240 EKNQHKVTLPLFTFHDILVKDK 261
[10][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 333 bits (854), Expect = 6e-90
Identities = 166/202 (82%), Positives = 178/202 (88%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG RDA IC KGPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAFICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I+LPPSV IVDNTQHIA++TEPI L IGLQIER+RGY I T NFQDGSY IDA+FMPV
Sbjct: 120 DIVLPPSVEIVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLHAEEEK
Sbjct: 180 QNANHSIHSYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+HKVTLP F HD LAK +
Sbjct: 240 ENNQHKVTLPFFPFHDRLAKLR 261
[11][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 333 bits (854), Expect = 6e-90
Identities = 168/202 (83%), Positives = 178/202 (88%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIAN+TEPI LCI LQIER+RGYRI T NFQ+GSY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSYVNGNE QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPF HAEE +
Sbjct: 180 RNANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HL 236
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+HK TLPLF H LAK +
Sbjct: 237 ENNQHKGTLPLFNFHGRLAKPR 258
[12][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 333 bits (853), Expect = 8e-90
Identities = 165/204 (80%), Positives = 179/204 (87%), Gaps = 2/204 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE +HEILMNLK+IVL+SNLYG RDASICFKGPGYVTA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESIHEILMNLKQIVLRSNLYGTRDASICFKGPGYVTAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDA--IFM 255
+IILPPSV IVDNTQHIAN+TEPI LCI LQIER RGYR T+ N QDGSY ID +FM
Sbjct: 120 DIILPPSVEIVDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFM 179
Query: 254 PVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 75
PV +AN+SIHSY+N NEKQEILFLEIWTNGSLTPKEALYEA+RNLIDLFIPFLHAEEE
Sbjct: 180 PVIHANYSIHSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENF 239
Query: 74 NFENNEHKVTLPLFTCHDLLAKTK 3
+FENN+HKVTLPLF HD L K K
Sbjct: 240 HFENNQHKVTLPLFAFHDRLVKDK 263
[13][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 333 bits (853), Expect = 8e-90
Identities = 169/204 (82%), Positives = 180/204 (88%), Gaps = 2/204 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG RDASIC KGPG VTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIAN+ EPI LCI L+IER+RGY I T NFQD SY +DAIFMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEEK NF
Sbjct: 180 RNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENF 239
Query: 68 --ENNEHKVTLPLFTCHDLLAKTK 3
+NN+ KVTLPLFT H+ LAK +
Sbjct: 240 HLKNNKKKVTLPLFTFHEKLAKLR 263
[14][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 330 bits (846), Expect = 5e-89
Identities = 163/200 (81%), Positives = 174/200 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+ NLYG R+A IC KGPGYVTAQ
Sbjct: 62 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQ 121
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQH+A++TEPI LCIGLQIER+RGY I T KNF DGSY IDA+FMPV
Sbjct: 122 DIILPPSVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPV 181
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIH Y N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+
Sbjct: 182 RNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 241
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
ENN+H VTLP F HD L K
Sbjct: 242 ENNQHDVTLPFFPFHDRLVK 261
[15][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 328 bits (840), Expect = 3e-88
Identities = 162/202 (80%), Positives = 174/202 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYS I GIQE VHEILMNLKEIVL+SNLYG R+A IC KGPGYVTAQ
Sbjct: 62 TCITRAKSEKIPHEYSIIAGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQ 121
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIA++TEPI LCIGLQIER+RGY I T NF DGSY ID +FMPV
Sbjct: 122 DIILPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPV 181
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +
Sbjct: 182 RNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHL 241
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
EN++HKVTLP F HD L K +
Sbjct: 242 ENSQHKVTLPFFPFHDKLTKLR 263
[16][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 326 bits (836), Expect = 8e-88
Identities = 161/202 (79%), Positives = 175/202 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HE+STI GIQE +HEILMNLK +VLKSNLYG DASI KGPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V I+DNTQHIA++TE I LCIGLQIER+RGYRI NFQDGSY IDA+FMPV
Sbjct: 120 DIILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+
Sbjct: 180 RNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+HKVTLPLFT H L K +
Sbjct: 240 EINQHKVTLPLFTFHGRLTKLR 261
[17][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 326 bits (836), Expect = 8e-88
Identities = 160/202 (79%), Positives = 177/202 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGI+E VHEILMNLKEIVL+SNLYG R+ASIC +GPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRNASICIRGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV VDNTQHIAN+TEPI CI L+IER+RGYR+ T N QDGSY IDA+FMPV
Sbjct: 120 DIISPPSVETVDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHA+EE +
Sbjct: 180 RNANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+N++ VTLP FT HD LAK +
Sbjct: 240 EDNQNGVTLPFFTFHDRLAKIR 261
[18][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 326 bits (835), Expect = 1e-87
Identities = 161/202 (79%), Positives = 177/202 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKFEKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ
Sbjct: 60 TCITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I+LPPSV I+DNTQHIA++ EPI LCIGLQIER+RGY I + NFQDGSY IDA+FMPV
Sbjct: 120 DILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE L+
Sbjct: 180 RNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
NN++ VT PLFT H LAK +
Sbjct: 240 GNNKYNVTFPLFTFHKKLAKLR 261
[19][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 325 bits (834), Expect = 1e-87
Identities = 163/202 (80%), Positives = 174/202 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ
Sbjct: 54 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQ 113
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVDNTQHIA + EPI LCIGLQIER+RGY I NFQDGSY IDA+FMPV
Sbjct: 114 DIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPV 173
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNE+QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+
Sbjct: 174 RNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHL 233
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+HK TLP T HD LAK +
Sbjct: 234 EYNQHKSTLPPLTFHDRLAKLR 255
[20][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 325 bits (834), Expect = 1e-87
Identities = 163/202 (80%), Positives = 174/202 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVDNTQHIA + EPI LCIGLQIER+RGY I NFQDGSY IDA+FMPV
Sbjct: 120 DIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNE+QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+
Sbjct: 180 RNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+HK TLP T HD LAK +
Sbjct: 240 EYNQHKSTLPPLTFHDRLAKLR 261
[21][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 325 bits (832), Expect = 2e-87
Identities = 158/202 (78%), Positives = 177/202 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK +KI HE+STI GIQE +HEILMNLKEIVL+SNLYG DASIC KGPG VTAQ
Sbjct: 60 TCITRAKSKKIPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHDASICVKGPGCVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA++ EPI L IGL+IER+RGY + KNFQDGSY+IDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +
Sbjct: 180 RNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+HK+TLPLF HD LAK +
Sbjct: 240 EKNQHKITLPLFAFHDRLAKLR 261
[22][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 324 bits (830), Expect = 4e-87
Identities = 158/200 (79%), Positives = 174/200 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR KFEK+ HEYSTI GIQE VHEI+MNLKEIVL+SNLYG +AS+C KGPGYVTAQ
Sbjct: 60 TCITRVKFEKVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTSEASVCVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA++TEPI CIGLQIER+RGY I T +NFQDGSY IDA+FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
++N+H V L FT HD LAK
Sbjct: 240 QDNQHTVPLSPFTFHDKLAK 259
[23][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 323 bits (829), Expect = 5e-87
Identities = 160/202 (79%), Positives = 176/202 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKFEKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ
Sbjct: 60 TCITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I+LPPSV I+DNTQHIA++ EPI LCIGLQIER+RGY I + NFQDGSY IDA+FMPV
Sbjct: 120 DILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE L+
Sbjct: 180 RNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
N++ VT PLFT H LAK +
Sbjct: 240 GKNKYNVTFPLFTFHKKLAKLR 261
[24][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 323 bits (827), Expect = 9e-87
Identities = 157/202 (77%), Positives = 177/202 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK +KI HE+STI GIQE +HEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ
Sbjct: 60 TCITRAKSKKIPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHNASICVKGPGCVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA++ EPI L IGL+IER+RGY + KNFQDGSY+IDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +
Sbjct: 180 RNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+HK+TLPLF HD LAK +
Sbjct: 240 EKNQHKITLPLFAFHDRLAKLR 261
[25][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 321 bits (823), Expect = 3e-86
Identities = 161/206 (78%), Positives = 177/206 (85%), Gaps = 4/206 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HE+STI GIQE +HEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF--QDGSYNIDAIFM 255
+IILPP V I+DNTQHIA++T+ I LCIGLQIER+RGYRI NF QDGSY+IDA+FM
Sbjct: 120 DIILPPFVEIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFM 179
Query: 254 PVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 75
PVRNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID FIPFLHAEEE L
Sbjct: 180 PVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENL 239
Query: 74 N--FENNEHKVTLPLFTCHDLLAKTK 3
+ E N+HKVTLPLF HD L K +
Sbjct: 240 HLEIEKNQHKVTLPLFCFHDKLTKLR 265
[26][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 321 bits (822), Expect = 3e-86
Identities = 158/200 (79%), Positives = 172/200 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK+ HEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ
Sbjct: 60 TCITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILF+EIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
++N+H V L FT HD LAK
Sbjct: 240 QDNQHTVPLSPFTFHDKLAK 259
[27][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 320 bits (820), Expect = 6e-86
Identities = 160/202 (79%), Positives = 175/202 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGI+E VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIA++TEPI LCI LQIER+RGYR+ T N Q+ SY IDA+FMPV
Sbjct: 120 DIISPPSVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWT+GSLTPKEALYEASRNLIDLFIPFLHAEE+
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+N+ +VTLP FT HD L K +
Sbjct: 240 EDNQSRVTLPFFTFHDGLDKVR 261
[28][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 320 bits (819), Expect = 7e-86
Identities = 157/202 (77%), Positives = 177/202 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF+K++HEYSTIVGI+E VHEILMNLKEIVL+SNLYG DASIC +GP VTAQ
Sbjct: 60 TCITRAKFDKVTHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTLDASICVRGPRSVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIAN+TEPI LCIGLQIERDRGYR+ T N+QDGSY ID +FMPV
Sbjct: 120 DIISPPSVEIVDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NG EKQEILFLEIWTNGSLTPKEALYEASRNLI+LFIPFLHAEE+++
Sbjct: 180 RNANHSIHSYGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E++E+ T+PLFT H+ LA K
Sbjct: 240 EDSENISTVPLFTFHNELANLK 261
[29][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 319 bits (818), Expect = 1e-85
Identities = 157/200 (78%), Positives = 172/200 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK+ HEYSTI GIQE VHEILMNLKEIVL+SNLYG +ASIC KGPGYVTAQ
Sbjct: 60 TCITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILF+EIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
++N+H V L FT HD LAK
Sbjct: 240 QDNQHTVPLSPFTFHDKLAK 259
[30][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 319 bits (818), Expect = 1e-85
Identities = 157/202 (77%), Positives = 175/202 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EK+ HEYSTI GI+E VHEILMNLKEIVL+SNLYG RDASIC +GP VTAQ
Sbjct: 60 TCITRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV +VD TQHIA++TEPI LCIGLQI+RDRGYR+ T KN QDGSY IDA+ MPV
Sbjct: 120 DIISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +NF
Sbjct: 180 RNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T+P FT D LA K
Sbjct: 240 EENQNRFTVPPFTFPDRLANLK 261
[31][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 319 bits (818), Expect = 1e-85
Identities = 157/202 (77%), Positives = 175/202 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EK+ HEYSTI GI+E VHEILMNLKEIVL+SNLYG RDASIC +GP VTAQ
Sbjct: 60 TCITRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV +VD TQHIA++TEPI LCIGLQI+RDRGYR+ T KN QDGSY IDA+ MPV
Sbjct: 120 DIISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +NF
Sbjct: 180 RNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T+P FT D LA K
Sbjct: 240 EENQNRFTVPPFTFPDRLANLK 261
[32][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 319 bits (817), Expect = 1e-85
Identities = 155/202 (76%), Positives = 173/202 (85%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRA EK+ HEYSTI+GI+E VHEIL+NLKEIVL+SN+YG+RDASIC +GP YVTAQ
Sbjct: 60 TCITRANSEKVPHEYSTIIGIEESVHEILLNLKEIVLRSNIYGVRDASICARGPKYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIAN+TEPI LCIGLQI RDRGYR N Q+GSY IDA+ MPV
Sbjct: 120 DIISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NF
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ TLP+FT D L K
Sbjct: 240 KENKNRFTLPIFTFQDRLTNLK 261
[33][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 319 bits (817), Expect = 1e-85
Identities = 158/200 (79%), Positives = 171/200 (85%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK+ HEYSTI GIQE VHEILMNLKEI+L+SNLYG DASIC KGPG VTAQ
Sbjct: 60 TCITRVKSEKVPHEYSTITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
++N+H V L FT HD LAK
Sbjct: 240 QDNQHTVPLSPFTFHDKLAK 259
[34][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 319 bits (817), Expect = 1e-85
Identities = 159/203 (78%), Positives = 176/203 (86%), Gaps = 1/203 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYST+VGIQE VH+ILMNLKEIVL+SNLYG DASIC +GPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT-LKNFQDGSYNIDAIFMP 252
+IILPP V +VDNTQHIA++TEPI+LCIGLQIER+RGY I T N +DGSY IDA+FMP
Sbjct: 120 DIILPPYVEVVDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMP 179
Query: 251 VRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 72
VRNANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+
Sbjct: 180 VRNANHSIHSYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLH 239
Query: 71 FENNEHKVTLPLFTCHDLLAKTK 3
NN+H V LP FT HD L K +
Sbjct: 240 LANNQHMVPLPPFTFHDKLDKLR 262
[35][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 318 bits (816), Expect = 2e-85
Identities = 159/203 (78%), Positives = 174/203 (85%), Gaps = 1/203 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYST+VGIQE VHEILMNLKEI+LKSNLYG DASIC +GPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIILKSNLYGTCDASICIRGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT-LKNFQDGSYNIDAIFMP 252
+II PP V IVDNTQHIA++ EPI LCIGLQIER+RGY I T NFQDGSY IDA+FMP
Sbjct: 120 DIISPPYVEIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMP 179
Query: 251 VRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 72
VRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLIDLFIPFLH EEE L+
Sbjct: 180 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLH 239
Query: 71 FENNEHKVTLPLFTCHDLLAKTK 3
+N+H V LP FT H+ L K +
Sbjct: 240 LADNQHTVPLPPFTFHEKLTKLR 262
[36][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 318 bits (816), Expect = 2e-85
Identities = 158/200 (79%), Positives = 172/200 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK+ HEYSTI+GIQE VHEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ
Sbjct: 60 TCITRVKSEKVPHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA++TE I CIGLQI+R+RGY I T NFQDGSY IDA+FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
++N+H V L FT HD LAK
Sbjct: 240 QDNQHTVPLSPFTFHDKLAK 259
[37][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 317 bits (813), Expect = 4e-85
Identities = 161/201 (80%), Positives = 174/201 (86%), Gaps = 1/201 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLK+IVL+SNLYG DA IC KGPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-YNIDAIFMP 252
+I+LPPSV IVDNTQHIA++TEPI L IGLQIER RGY I T FQDG+ Y IDA+FMP
Sbjct: 120 DILLPPSVEIVDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMP 179
Query: 251 VRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 72
VRNANHSI SY NGNEKQEILFLEIWTNGSLTPKEAL+EASR+LIDLFIPFL AE+E L
Sbjct: 180 VRNANHSIQSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLP 239
Query: 71 FENNEHKVTLPLFTCHDLLAK 9
ENN++KVTLP FT HD LAK
Sbjct: 240 LENNQYKVTLPFFTFHDRLAK 260
[38][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 317 bits (812), Expect = 5e-85
Identities = 156/202 (77%), Positives = 173/202 (85%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E++ HEYSTI+GI+E VHEIL+NLKEIVL+SNLYG+RDASIC +GP YVTAQ
Sbjct: 60 TCITRAKSERVPHEYSTIIGIEESVHEILLNLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD TQHIAN+TEPI L I LQI+RDRGYR+ N QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NF
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ TLP T D L K
Sbjct: 240 EENKNRFTLPFLTFQDRLTNLK 261
[39][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 317 bits (812), Expect = 5e-85
Identities = 157/202 (77%), Positives = 174/202 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AK EKI HEYS IVGI+E VHEILMNLKEIVL+SNLYG RDASIC +GP +VTAQ
Sbjct: 60 TCITCAKSEKIPHEYSNIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRHVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV I+D TQHIA++TEPI LCIGLQIER+RGY + T KN QDG Y IDA+FMPV
Sbjct: 120 DIISPPSVEIIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHA EE
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFIL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
++N++KV LPLFT HD LAK +
Sbjct: 240 KDNQNKVALPLFTFHDRLAKQR 261
[40][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 317 bits (811), Expect = 6e-85
Identities = 155/202 (76%), Positives = 174/202 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EK++HEYSTIVGI+E VHEIL+NLKEI+L+SNLYG+ DASIC +GP YVTAQ
Sbjct: 60 TCITRAKSEKVAHEYSTIVGIEESVHEILLNLKEIILRSNLYGVIDASICVRGPRYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PP V IVD TQHIAN+TEPI LCI LQI+RDRGYR+ + N QDGSY IDA+ MPV
Sbjct: 120 DIISPPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NF
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ LPLFT + L K
Sbjct: 240 EENKNRFPLPLFTFQNRLTNLK 261
[41][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 316 bits (810), Expect = 8e-85
Identities = 158/202 (78%), Positives = 176/202 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GP VTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTILGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRGVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA++TEPI LCIGLQ+ER+RGY I NFQDGS+ IDA+FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL IPFLHA EE +N
Sbjct: 180 RNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHA-EENVNL 238
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+N+HKV+LPLFT H+ LA+ +
Sbjct: 239 EDNQHKVSLPLFTFHNRLAEIR 260
[42][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 316 bits (810), Expect = 8e-85
Identities = 159/203 (78%), Positives = 173/203 (85%), Gaps = 1/203 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGI+E VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIA++TEP+ CIGLQIE +RGYR+ T N Q GSY IDA+FMPV
Sbjct: 120 DIISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNE QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N
Sbjct: 180 RNANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNL 239
Query: 68 ENNE-HKVTLPLFTCHDLLAKTK 3
++N+ + VTLP FT HD K K
Sbjct: 240 KDNQKNGVTLPFFTFHDGFDKLK 262
[43][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 316 bits (810), Expect = 8e-85
Identities = 157/192 (81%), Positives = 169/192 (88%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+ NLYG R+A IC KGPGYVTAQ
Sbjct: 62 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQ 121
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQH+A++TEPI LCIGLQIER+RGY I T KNF DGSY IDA+FMPV
Sbjct: 122 DIILPPSVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPV 181
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIH Y N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFI FLHA+EE L+
Sbjct: 182 RNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHL 241
Query: 68 ENNEHKVTLPLF 33
ENN+H VTL F
Sbjct: 242 ENNQHDVTLHFF 253
[44][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 315 bits (808), Expect = 1e-84
Identities = 155/202 (76%), Positives = 173/202 (85%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EK+ HEYST+VGI+E VHEIL NLKEIVL+SNLY IRDASIC +GP YVTAQ
Sbjct: 60 TCITRAKSEKVPHEYSTVVGIEESVHEILFNLKEIVLRSNLYEIRDASICVRGPRYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PP V IVD TQ+IAN+TEPI LCI L+I+RDRGYR+ + N QDGSY IDA+FMPV
Sbjct: 120 DIISPPYVEIVDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +NF
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N++K TLP T D L+ K
Sbjct: 240 EENKNKFTLPPLTFQDRLSNLK 261
[45][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 314 bits (805), Expect = 3e-84
Identities = 153/196 (78%), Positives = 171/196 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EK+ HEYSTIVGI+E VHEILMNLKEIV +S+LYG R ASIC +GP YVTAQ
Sbjct: 60 TCITRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVFRSHLYGTRGASICVRGPRYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQ+IA++TEPI LCI LQIERDRGYRI T N+QDGSY IDA+ MPV
Sbjct: 120 DIISPPSVKIVDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGS TPKEALYEASRNLIDLF+PFLHAEE+ +N
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINV 239
Query: 68 ENNEHKVTLPLFTCHD 21
E+N+++ T PLFT HD
Sbjct: 240 EDNQNRATAPLFTFHD 255
[46][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 313 bits (801), Expect = 9e-84
Identities = 156/202 (77%), Positives = 169/202 (83%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E + HEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC +GPGYVTAQ
Sbjct: 34 TCITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQ 93
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA++TEPI LCIGLQI+R+RGY I NFQDGSY IDA+FMPV
Sbjct: 94 DIILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPV 153
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEE L
Sbjct: 154 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPL 213
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+N+H V L T HD L K +
Sbjct: 214 EDNQHTVPLSPLTFHDKLDKLR 235
[47][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 313 bits (801), Expect = 9e-84
Identities = 156/202 (77%), Positives = 174/202 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AK EKI HEYSTIVGI+E VHEILMNLKEIVL+SNLYG DASIC KGP +TA+
Sbjct: 60 TCITHAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTCDASICVKGPINITAK 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIA++TEP LCIGLQIER+RGYR+ T Q+GSY IDA+FMPV
Sbjct: 120 DIISPPSVEIVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ +
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIIL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+N+++VTLP FT HD LAK K
Sbjct: 240 EDNQNRVTLPFFTFHDGLAKLK 261
[48][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 311 bits (798), Expect = 2e-83
Identities = 156/204 (76%), Positives = 174/204 (85%), Gaps = 2/204 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EK+ HEYSTIVGI+E VHEILMNLKEIVLKSNLYG RDASIC +GP YVTAQ
Sbjct: 60 TCITRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIA++TEPI LCI LQIERDRGYR+ N+QDGSY IDA+ MPV
Sbjct: 120 DIISPPSVEIVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE--KL 75
RNANHSIHSY +GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ L
Sbjct: 180 RNANHSIHSYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHL 239
Query: 74 NFENNEHKVTLPLFTCHDLLAKTK 3
N E+N+++ T+ FT HD L +
Sbjct: 240 NLEDNQNRFTVSPFTLHDRLGNIR 263
[49][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 311 bits (797), Expect = 3e-83
Identities = 155/202 (76%), Positives = 170/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK HEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC KGPG VTA+
Sbjct: 60 TCITRVKSEKAPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGCVTAE 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIA +TEPI CIGLQIER+RGY + T NF+DGSY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+ EH + L + HD +AK +
Sbjct: 240 EDGEHTIPLSPLSFHDKVAKLR 261
[50][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 311 bits (796), Expect = 3e-83
Identities = 151/201 (75%), Positives = 172/201 (85%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK +K+ HEYSTIVGI+E +HEI MNLKEIVL+SNLYG R+ASIC +GP YVTAQ
Sbjct: 60 TCITRAKLDKVPHEYSTIVGIEESIHEIFMNLKEIVLRSNLYGTRNASICVRGPRYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIA++TEPI LCI LQI+RDRGYR+ T +Q+GSY IDA+ MPV
Sbjct: 120 DIISPPSVEIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
E+N ++ +P FT HD LA T
Sbjct: 240 EDNPNRFNIPFFTFHDGLANT 260
[51][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 310 bits (795), Expect = 4e-83
Identities = 153/198 (77%), Positives = 171/198 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EK+ HEYSTIVGI+E VHEILMNLKEIVL+SNLYG R+ASIC KGP +TA+
Sbjct: 60 TCITRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTREASICVKGPKTITAE 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILP SV IVD TQHIA +TEP+ L IGLQI+RDRGYR+ N QDGSY IDA+FMPV
Sbjct: 120 DIILPASVEIVDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSI+SY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ +N
Sbjct: 180 RNANHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINL 239
Query: 68 ENNEHKVTLPLFTCHDLL 15
E N+ + TLPLFT HD L
Sbjct: 240 EENKSRFTLPLFTFHDKL 257
[52][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 310 bits (794), Expect = 6e-83
Identities = 155/200 (77%), Positives = 172/200 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKFEKISHEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ
Sbjct: 60 TCITRAKFEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA +TEPI+L IGLQIE++RGY I FQDGSY ID +FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGN +EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE LN
Sbjct: 180 RNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNL 237
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
E+N+H + LP FT +D LAK
Sbjct: 238 EDNQHMIPLPPFTFYDKLAK 257
[53][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 310 bits (794), Expect = 6e-83
Identities = 150/202 (74%), Positives = 171/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H+VTLPLF H+ L +
Sbjct: 240 ENNQHQVTLPLFPFHNRLVNLR 261
[54][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 310 bits (794), Expect = 6e-83
Identities = 150/202 (74%), Positives = 171/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H+VTLPLF H+ L +
Sbjct: 240 ENNQHQVTLPLFPFHNRLVNLR 261
[55][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 310 bits (793), Expect = 8e-83
Identities = 155/202 (76%), Positives = 170/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+S YG DASIC +GPG VTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSTFYGTCDASICVRGPGGVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PP V IVD TQHIAN+TEPI L I LQ+ER+RGYRI T NFQDGSY ID +FMPV
Sbjct: 120 DIISPPYVEIVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+E +
Sbjct: 180 RNVNHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+N+ +VTLPLF HD L + +
Sbjct: 240 EDNQDRVTLPLFLFHDRLIELR 261
[56][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 310 bits (793), Expect = 8e-83
Identities = 150/202 (74%), Positives = 170/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL EIVLKSNLYG R+ IC +GPGY+TA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNPFICVQGPGYITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLI+LFIPFLH EEE
Sbjct: 180 QNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H+VTLP+F H+ L +
Sbjct: 240 ENNQHQVTLPVFPFHNKLVNLR 261
[57][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 309 bits (792), Expect = 1e-82
Identities = 157/205 (76%), Positives = 175/205 (85%), Gaps = 3/205 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK +KI HEYST+VGIQE VH+ILMNLKEIVL+SNLYG DASIC +GPGYVTAQ
Sbjct: 60 TCITRAKSKKIPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT-LKNFQDGSYNIDAIFMP 252
+IILPP V +VDNTQHIA++TEPI+L IGLQIER RGY I T NFQDGSY IDA+FMP
Sbjct: 120 DIILPPYVEVVDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMP 179
Query: 251 VRNANHSIHSY--VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
+RNANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE
Sbjct: 180 IRNANHSIHSYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEEN 239
Query: 77 LNFENNEHKVTLPLFTCHDLLAKTK 3
L+ +N+H V LP FT HD L K +
Sbjct: 240 LHLADNQHMVPLPPFTFHDNLDKLR 264
[58][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 309 bits (792), Expect = 1e-82
Identities = 150/202 (74%), Positives = 170/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TAQ
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA + EPI LCIGL+IER+RGY + NF+D SY IDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H+VTLPLF H+ L +
Sbjct: 240 ENNQHQVTLPLFPFHNRLVNLR 261
[59][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 309 bits (791), Expect = 1e-82
Identities = 153/202 (75%), Positives = 173/202 (85%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK+ +EY TIVGI+E VHEILMNLKEIVL+S+LYG RDASIC +GP YVTAQ
Sbjct: 60 TCITRVKSEKVPNEYYTIVGIEESVHEILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIA++TEPI LCI LQIERDRGYR+ T N+QDGSY IDA+ MPV
Sbjct: 120 DIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ +
Sbjct: 180 RNANHSIHSYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+N ++ T+PLFT HD LA +
Sbjct: 240 EDNPNRFTVPLFTFHDRLANIR 261
[60][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 308 bits (790), Expect = 2e-82
Identities = 150/202 (74%), Positives = 170/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TAQ
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H+VTLPLF H+ L +
Sbjct: 240 ENNQHQVTLPLFPFHNRLVNLR 261
[61][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 308 bits (790), Expect = 2e-82
Identities = 151/202 (74%), Positives = 170/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK++HEYSTI GIQE VHEILMNLKEIV +SNLYG DASIC +GPGYVTAQ
Sbjct: 60 TCITRVKSEKVAHEYSTIAGIQESVHEILMNLKEIVFRSNLYGTCDASICVRGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I+LPP V IVDNTQHIA + EPI LCI L+IER+RGY I T +NFQDGSY IDA+FMP+
Sbjct: 120 DIVLPPYVEIVDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPI 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNAN+SIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ +
Sbjct: 180 RNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H V L F HD L K +
Sbjct: 240 ENNQHTVPLAPFFFHDKLDKLR 261
[62][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 308 bits (789), Expect = 2e-82
Identities = 156/202 (77%), Positives = 171/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EK+ HEYSTIVGI+E VHEI +NLKEIVL NLYG+RDASIC +GP YVTAQ
Sbjct: 60 TCITRAKSEKVPHEYSTIVGIEESVHEIFINLKEIVL--NLYGVRDASICVRGPRYVTAQ 117
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIAN+TEPI L I LQI+RDRGYRIN N QDGSY IDA+ MPV
Sbjct: 118 DIISPPSVEIVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPV 177
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE ++F
Sbjct: 178 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHF 237
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ TLPLFT + L K
Sbjct: 238 EENKNRFTLPLFTFQNRLTNLK 259
[63][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 308 bits (789), Expect = 2e-82
Identities = 153/201 (76%), Positives = 171/201 (85%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK+ HE+STIVGI+E VHEI+MNLKEIVL+SNLYG DASIC +GP YVTAQ
Sbjct: 60 TCITRVKSEKVPHEFSTIVGIEESVHEIVMNLKEIVLRSNLYGTLDASICIRGPRYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD TQHIAN+TE + LCI LQIERDRGY + T N +DGSY IDAIFMPV
Sbjct: 120 DIILPPSVEIVDATQHIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHS+HSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE +++
Sbjct: 180 RNANHSVHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
E+N + V L LFT HD A T
Sbjct: 240 EDNANGVPLALFTFHDEFAIT 260
[64][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 308 bits (789), Expect = 2e-82
Identities = 155/200 (77%), Positives = 171/200 (85%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKISHEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ
Sbjct: 60 TCITRAKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V I+DNTQHIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPV
Sbjct: 120 DIILPPYVEILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGN +EILFLEIWTNGSLTPKEALYEASRNLIDL IPFLH +EE LN
Sbjct: 180 RNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNL 237
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
E N+H V LP FT +D LAK
Sbjct: 238 EGNQHMVPLPPFTFYDKLAK 257
[65][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 307 bits (787), Expect = 4e-82
Identities = 157/202 (77%), Positives = 170/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVDNTQHIA + EPI LCIGLQIER+RGY +GSY IDA+FMPV
Sbjct: 120 DIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGY---------NGSYPIDAVFMPV 170
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NG+E+QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+
Sbjct: 171 RNANHSIHSYGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHL 230
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+HK TLP T HD LAK +
Sbjct: 231 EYNQHKGTLPPLTFHDRLAKLR 252
[66][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 307 bits (786), Expect = 5e-82
Identities = 150/202 (74%), Positives = 170/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIA VTE I LCIGL+IER+RGY + NF+D SY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY NGN KQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE +
Sbjct: 180 QNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H+VTLPLF H+ L +
Sbjct: 240 ENNQHQVTLPLFPFHNRLVNLR 261
[67][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 306 bits (784), Expect = 8e-82
Identities = 154/200 (77%), Positives = 172/200 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK +KISHEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ
Sbjct: 60 TCITRAKSDKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTYEASICVRGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGN +EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE LN
Sbjct: 180 RNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNL 237
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
E+N+H V LP FT +D LAK
Sbjct: 238 EDNQHIVPLPPFTFYDKLAK 257
[68][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 306 bits (783), Expect = 1e-81
Identities = 148/202 (73%), Positives = 170/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE +
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H+VTLP F H+ L +
Sbjct: 240 ENNQHQVTLPFFPFHNRLVNLR 261
[69][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 306 bits (783), Expect = 1e-81
Identities = 149/202 (73%), Positives = 171/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL+EIVL+SNLYG +A IC +GPG +TA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGSITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA +TEPI LCIGLQIER+RGY + +F+DGSY IDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY GNEKQEILFLEIWTNG+LTPKEAL+EASRNLI+LFIPFLH EEE
Sbjct: 180 QNANHSIHSYGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+HKVTLPLF H+ L K +
Sbjct: 240 ENNQHKVTLPLFPFHNRLVKLR 261
[70][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 305 bits (782), Expect = 1e-81
Identities = 148/202 (73%), Positives = 169/202 (83%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H+VTLP F H+ L +
Sbjct: 240 ENNQHQVTLPFFPFHNRLVNLR 261
[71][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 305 bits (781), Expect = 2e-81
Identities = 147/185 (79%), Positives = 165/185 (89%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EK+ HEYST+VGIQE VHEILMNLKEIVL+SNLYG DA+IC KGPGYVTAQ
Sbjct: 60 TCITRAKSEKLPHEYSTLVGIQESVHEILMNLKEIVLRSNLYGTCDAAICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PP V I+DNTQHIA++TEPI+LCIGLQIER+RGY I T KNFQDGSY IDA+FMPV
Sbjct: 120 DIISPPYVEIIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN NHSI+SY GN+K EILFLEIWTNGSLTPKEAL+EA+RNLIDLFIPFLH EEE L+
Sbjct: 180 RNVNHSIYSYGTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDL 239
Query: 68 ENNEH 54
E+N+H
Sbjct: 240 EDNQH 244
[72][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 304 bits (778), Expect = 4e-81
Identities = 153/200 (76%), Positives = 172/200 (86%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKISHEY+TI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ
Sbjct: 60 TCITRAKSEKISHEYATIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGN +EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE L+
Sbjct: 180 RNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSL 237
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
E+N+H V LP FT +D LAK
Sbjct: 238 EDNQHIVPLPPFTFYDKLAK 257
[73][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 304 bits (778), Expect = 4e-81
Identities = 147/196 (75%), Positives = 166/196 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA+
Sbjct: 60 TCITRVKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVDNTQHIA +TEPI LCIGL+IER+RGY + N +D SY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHD 21
ENN+H+VTLP F H+
Sbjct: 240 ENNQHQVTLPFFPFHN 255
[74][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 303 bits (777), Expect = 5e-81
Identities = 148/202 (73%), Positives = 168/202 (83%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGARNAIICVQGPGYITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA +TE I LCIGL+IER+RGY + L F+D SY IDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY NGN KQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE
Sbjct: 180 QNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H VTLPLF H+ L +
Sbjct: 240 ENNQHHVTLPLFPFHNRLVNLR 261
[75][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 303 bits (776), Expect = 7e-81
Identities = 149/202 (73%), Positives = 169/202 (83%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS IVGIQE VHEILMNL+EIVL+SNLYG +A IC +GPGY+TA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGYITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+DNTQHIA +TEPI LCIGLQIER+RGY + F+DGSY IDA+FMPV
Sbjct: 120 DIILPPSVEIMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY GNE QEILFLEIWTNG+LTPKEAL+EASRNLI+LFIPFLH EEE
Sbjct: 180 QNANHSIHSYGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENNE KVTLPLF H+ L K +
Sbjct: 240 ENNEDKVTLPLFPFHNRLVKLR 261
[76][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 301 bits (772), Expect = 2e-80
Identities = 149/202 (73%), Positives = 169/202 (83%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK +K+ HEYSTIVGI+E VHEILMNLK+IV +S+LYG DASIC +GP +VTAQ
Sbjct: 60 TCITRAKSDKVPHEYSTIVGIEESVHEILMNLKKIVFRSDLYGTLDASICVRGPRHVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIA +TEP+ LCI L+IER RGY + T N+QDGSY IDA+ MPV
Sbjct: 120 DIISPPSVEIVDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ +N
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINI 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+N + T+P FT HD L K
Sbjct: 240 EDNLKRATVPFFTFHDGLDNMK 261
[77][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 301 bits (771), Expect = 3e-80
Identities = 145/202 (71%), Positives = 167/202 (82%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK E I H+YS I GIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA+
Sbjct: 60 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP+V I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV
Sbjct: 120 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 180 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+H+VTLP F H+ L +
Sbjct: 240 ENNQHQVTLPFFPFHNRLVNLR 261
[78][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 298 bits (764), Expect = 2e-79
Identities = 145/202 (71%), Positives = 167/202 (82%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRA E + HEYSTI GI+E VHEIL+NLK+IVL+SNLYG+R+ASIC +GP Y+TAQ
Sbjct: 60 TCITRATSENVLHEYSTIAGIEESVHEILLNLKDIVLRSNLYGVRNASICVRGPKYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIAN+TEPI LCI LQI+RDRGYR+ + + DGSY ID + MPV
Sbjct: 120 DIISPPSVEIVDTTQHIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLIDL IPFLHAEEE +NF
Sbjct: 180 RNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ NE++ LP F+ D K
Sbjct: 240 KENENRWNLPPFSFQDKFTNFK 261
[79][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 298 bits (762), Expect = 3e-79
Identities = 150/202 (74%), Positives = 165/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK K+ HEYSTIVGI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKSGKVPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIAN+TEPI LCI LQI+RDRGY KN QDGSY IDA+ MPV
Sbjct: 120 DIISPPSVEIVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI+S N NEK EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE NF
Sbjct: 180 RNVNYSIYSCGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ TLPL T L K
Sbjct: 240 EENKNRFTLPLLTFQKRLTNLK 261
[80][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 298 bits (762), Expect = 3e-79
Identities = 149/202 (73%), Positives = 163/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K + + HEYSTI GIQE VHEILMN KEIVL+SNLYG DASIC +GPGYVTAQ
Sbjct: 60 TCITRVKSKNVPHEYSTIAGIQESVHEILMNFKEIVLRSNLYGTCDASICVRGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA++TEPI LCIGLQIER+RGY + N QDGSY IDA+FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY +GNEK EILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEE
Sbjct: 180 RNANHSIHSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPL 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+N H V L T HD K +
Sbjct: 240 EDNHHTVPLSPLTFHDKADKLR 261
[81][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 297 bits (760), Expect = 5e-79
Identities = 151/202 (74%), Positives = 170/202 (84%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T ITR KF K SHEYSTI GIQE VHEI MNLKEIVL+SNLYG DASI KGPG+VTA+
Sbjct: 60 TRITRVKFAKASHEYSTIAGIQESVHEIFMNLKEIVLRSNLYGTCDASISIKGPGHVTAK 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVD+TQHIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV
Sbjct: 120 DIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+
Sbjct: 180 RNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHL 237
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+ +H ++L FT +D +AK +
Sbjct: 238 EDADHTISLSPFTVYDKVAKLR 259
[82][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 295 bits (756), Expect = 1e-78
Identities = 151/204 (74%), Positives = 170/204 (83%), Gaps = 2/204 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK +KI HEYSTIVGI+E VH+ILMNLKEIVL+SNLYG DASI +GP VTAQ
Sbjct: 60 TCITRAKSDKIPHEYSTIVGIEESVHQILMNLKEIVLRSNLYGTCDASIFVRGPRCVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSY--NIDAIFM 255
+II PPSV +VD TQHIA++TEPI LCIGLQIERDRGYR+ T N QDGSY I+A+ M
Sbjct: 120 DIISPPSVKMVDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSM 179
Query: 254 PVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 75
PVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EAS NLIDLFIPFLH EEE +
Sbjct: 180 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDI 239
Query: 74 NFENNEHKVTLPLFTCHDLLAKTK 3
N E++ ++ TLP FT D LA +
Sbjct: 240 NLEDSLNRGTLPFFTFQDKLANLR 263
[83][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 295 bits (755), Expect = 2e-78
Identities = 146/202 (72%), Positives = 165/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPKYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ +KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[84][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 294 bits (753), Expect = 3e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[85][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 294 bits (753), Expect = 3e-78
Identities = 151/202 (74%), Positives = 168/202 (83%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T ITR KF SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI FKGPGYVTA+
Sbjct: 60 TRITRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAE 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVD+TQHIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV
Sbjct: 120 DIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPL 237
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+ +H + L FT + +AK K
Sbjct: 238 EDADHTIPLSPFTVYYKVAKNK 259
[86][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 294 bits (753), Expect = 3e-78
Identities = 151/202 (74%), Positives = 168/202 (83%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T ITR KF SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI FKGPGYVTA+
Sbjct: 60 TRITRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAE 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVD+TQHIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV
Sbjct: 120 DIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPL 237
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+ +H + L FT + +AK K
Sbjct: 238 EDADHTIPLSPFTVYYKVAKNK 259
[87][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 294 bits (753), Expect = 3e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[88][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 294 bits (752), Expect = 4e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNPK 261
[89][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 294 bits (752), Expect = 4e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[90][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 294 bits (752), Expect = 4e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[91][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 294 bits (752), Expect = 4e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[92][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 294 bits (752), Expect = 4e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[93][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 294 bits (752), Expect = 4e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[94][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 294 bits (752), Expect = 4e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[95][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 294 bits (752), Expect = 4e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[96][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 294 bits (752), Expect = 4e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[97][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 293 bits (751), Expect = 6e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[98][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 293 bits (751), Expect = 6e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[99][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 293 bits (751), Expect = 6e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[100][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 293 bits (751), Expect = 6e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNLNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[101][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 293 bits (751), Expect = 6e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFKKRLTNLK 261
[102][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 293 bits (751), Expect = 6e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[103][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 293 bits (751), Expect = 6e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[104][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 293 bits (750), Expect = 7e-78
Identities = 146/202 (72%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[105][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 292 bits (747), Expect = 2e-77
Identities = 145/202 (71%), Positives = 163/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV VD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[106][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 292 bits (747), Expect = 2e-77
Identities = 145/201 (72%), Positives = 163/201 (81%)
Frame = -2
Query: 605 CITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQN 426
CITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 425 IILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVR 246
IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 245 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 66
N N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 65 NNEHKVTLPLFTCHDLLAKTK 3
N+++ T PLFT L K
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLK 261
[107][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 291 bits (746), Expect = 2e-77
Identities = 145/202 (71%), Positives = 163/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+ EPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[108][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 291 bits (746), Expect = 2e-77
Identities = 146/202 (72%), Positives = 163/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[109][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 291 bits (746), Expect = 2e-77
Identities = 145/202 (71%), Positives = 163/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCI RAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCIARAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFKKRLTNLK 261
[110][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 291 bits (745), Expect = 3e-77
Identities = 145/202 (71%), Positives = 164/202 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI L+I+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[111][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 291 bits (745), Expect = 3e-77
Identities = 145/202 (71%), Positives = 163/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T P FT L K
Sbjct: 240 EENKNRFTPPPFTFQKRLTNLK 261
[112][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 291 bits (744), Expect = 4e-77
Identities = 145/202 (71%), Positives = 163/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NG EK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[113][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 291 bits (744), Expect = 4e-77
Identities = 145/202 (71%), Positives = 163/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T P FT L K
Sbjct: 240 EENKNRFTPPPFTFKKRLTNLK 261
[114][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 291 bits (744), Expect = 4e-77
Identities = 143/193 (74%), Positives = 162/193 (83%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCI RAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCIARAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD +Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFT 30
E N+++ T PLFT
Sbjct: 240 EENKNRFTPPLFT 252
[115][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 290 bits (742), Expect = 6e-77
Identities = 142/193 (73%), Positives = 161/193 (83%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD TQ IAN+ EPI CI LQI+RDRGY KN QDGSY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSF 239
Query: 68 ENNEHKVTLPLFT 30
E N++++T PL T
Sbjct: 240 EENKNRLTPPLLT 252
[116][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 289 bits (740), Expect = 1e-76
Identities = 141/193 (73%), Positives = 161/193 (83%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFWNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD TQ IAN+ EP+ CI LQI+RDRGY KN QDGSY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDTTQPIANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSF 239
Query: 68 ENNEHKVTLPLFT 30
E N++++T PL T
Sbjct: 240 EENKNRLTPPLLT 252
[117][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 289 bits (739), Expect = 1e-76
Identities = 144/202 (71%), Positives = 162/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP +TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILVNLKEIVLRSNLYGVRDASICVKGPRCITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV +VD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEVVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNRK 261
[118][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 289 bits (739), Expect = 1e-76
Identities = 145/202 (71%), Positives = 161/202 (79%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY KN QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PL T L K
Sbjct: 240 EENKNRFTPPLLTFQKRLTNLK 261
[119][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 288 bits (738), Expect = 2e-76
Identities = 146/202 (72%), Positives = 167/202 (82%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T ITR KF SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI KGPGYVTA+
Sbjct: 60 TRITRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAE 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V +VD+TQHIA + EPI LCIGL+IER+RGY + T NF+DGSY IDA+FMPV
Sbjct: 120 DIILPPHVEVVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L+
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHL 237
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+ + + L FT +D +AK +
Sbjct: 238 EDADRTIPLSPFTVYDKVAKLR 259
[120][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 288 bits (737), Expect = 2e-76
Identities = 144/202 (71%), Positives = 162/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ M V
Sbjct: 120 DIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PL T L K
Sbjct: 240 EENKNRFTPPLLTFQKRLTNLK 261
[121][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 288 bits (737), Expect = 2e-76
Identities = 141/193 (73%), Positives = 160/193 (82%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD TQ IAN+ EP+ CI LQI+RDR Y KN QDGSY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDTTQPIANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSF 239
Query: 68 ENNEHKVTLPLFT 30
E N++++T PL T
Sbjct: 240 EENKNRLTPPLLT 252
[122][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 288 bits (736), Expect = 3e-76
Identities = 144/204 (70%), Positives = 166/204 (81%), Gaps = 2/204 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK +K+ HEYST+VGI+E VHEILMNLK++V +S+LYG DASIC +GP +VTAQ
Sbjct: 60 TCITRAKSDKVPHEYSTVVGIEESVHEILMNLKKMVFRSDLYGTLDASICVRGPRHVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIA +TEP+ LCI L+IER RGY T N+QDGSY IDA+ MPV
Sbjct: 120 DIISPPSVEIVDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-- 75
RNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ +
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINR 239
Query: 74 NFENNEHKVTLPLFTCHDLLAKTK 3
N E+N + ++P F D L K
Sbjct: 240 NMEDNLKRASVPFFAFDDGLDNIK 263
[123][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 287 bits (735), Expect = 4e-76
Identities = 144/202 (71%), Positives = 161/202 (79%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSXPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY I + MPV
Sbjct: 120 DIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PLFT L K
Sbjct: 240 EENKNRFTPPLFTFQKRLTNLK 261
[124][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 287 bits (735), Expect = 4e-76
Identities = 148/202 (73%), Positives = 166/202 (82%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T ITR KF SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI KGPGYVTA+
Sbjct: 60 TRITRVKFANTSHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAE 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVD+TQHIA +TEPI IGL+IER+ GY I T NF+DGSY IDA+FMPV
Sbjct: 120 DIILPPHVEIVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNANHSI+SY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+
Sbjct: 180 RNANHSINSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHL 237
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E+ +H + L FT +D +AK +
Sbjct: 238 EDADHTIPLSPFTVYDKVAKLR 259
[125][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 286 bits (732), Expect = 9e-76
Identities = 140/193 (72%), Positives = 160/193 (82%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+ EPI CI LQI+RDRGY KN QDGSY IDA+FMPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +F
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSF 239
Query: 68 ENNEHKVTLPLFT 30
E +++++T PL T
Sbjct: 240 EESKNRLTPPLLT 252
[126][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 144/202 (71%), Positives = 160/202 (79%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEPI CI LQI+RDRGY KN QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +F
Sbjct: 180 RNVNYSIFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
E N+++ T PL T L K
Sbjct: 240 EENKNRFTPPLLTFQKKLTNLK 261
[127][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 285 bits (730), Expect = 2e-75
Identities = 146/198 (73%), Positives = 159/198 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E + HEYSTI GIQE V EILMNLKEIVL+SNLYG ASIC +GPGYVTAQ
Sbjct: 45 TCITRVKSENVPHEYSTIAGIQESVPEILMNLKEIVLRSNLYGTCGASICARGPGYVTAQ 104
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V I DNTQHIA +TEPI CIGL+IER RGY I + FQD SY IDA+FMPV
Sbjct: 105 DIILPPCVEIGDNTQHIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPV 164
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L
Sbjct: 165 RNVNHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 222
Query: 68 ENNEHKVTLPLFTCHDLL 15
ENN+ V+ F+ H+ L
Sbjct: 223 ENNQDTVSFSPFSFHEKL 240
[128][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 282 bits (721), Expect = 2e-74
Identities = 140/190 (73%), Positives = 159/190 (83%)
Frame = -2
Query: 599 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 420
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASI KGP Y+TAQ+II
Sbjct: 68 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASISVKGPRYITAQDII 127
Query: 419 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 240
LPPSV IVD +Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 128 LPPSVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 187
Query: 239 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 60
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 188 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 247
Query: 59 EHKVTLPLFT 30
+++ T PLFT
Sbjct: 248 KNRFTPPLFT 257
[129][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 281 bits (719), Expect = 3e-74
Identities = 141/199 (70%), Positives = 163/199 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AK E++ HEYSTIVGI+E VHEILMNLKEI+++S+LYG RDA IC +GP YVTAQ
Sbjct: 60 TCITCAKSERVPHEYSTIVGIEESVHEILMNLKEIIVRSDLYGTRDAFICVRGPKYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PPSV IVD TQHIA++TEPI CIGL+IER+RGYR T QD SY IDA+ MPV
Sbjct: 120 DIISPPSVKIVDTTQHIASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSMPV 177
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNAN+SI Y N NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE L+
Sbjct: 178 RNANYSIQCYGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHL 237
Query: 68 ENNEHKVTLPLFTCHDLLA 12
+++++ T P F H+ LA
Sbjct: 238 DDDQNIFTAPFFPFHEGLA 256
[130][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 274 bits (701), Expect = 4e-72
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR F+ SHEYS I GIQE VH+ILMNLKEIVLKSNLYG DAS+ KGP YVTAQ
Sbjct: 60 TCITRVTFQNASHEYSIIAGIQESVHDILMNLKEIVLKSNLYGTCDASLYIKGPRYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVD+TQHIA++TEPI LCIGL+IER+RGY I FQ+ +Y++DA+FMPV
Sbjct: 120 DIILPPHVEIVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
N NHSI+SY GNEK+EILFLEIWTNGSLTPKEAL+EA++NL+DLFIPFL EEE LN
Sbjct: 180 LNVNHSIYSY--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNL 237
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
E+ EH++ FT +D ++K
Sbjct: 238 EDAEHQIPFSPFTFYDKVSK 257
[131][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 273 bits (699), Expect = 6e-72
Identities = 142/202 (70%), Positives = 163/202 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T ITRAKFEK+ HEYSTI GIQE VHEILMNLKEIVL+SNLYG +ASIC KGPGYVTAQ
Sbjct: 60 TAITRAKFEKVPHEYSTIRGIQESVHEILMNLKEIVLRSNLYGTCEASICVKGPGYVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+II PP V IVDNTQHIA++TEPI+L I LQIE++R ++ FQDGSY I A+ MPV
Sbjct: 120 DIISPPYVEIVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+ N+SIHS +GN KQEILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EE N
Sbjct: 180 RHMNYSIHS--SGNGKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEG--NL 235
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
ENN+ ++ P FT +D L+K K
Sbjct: 236 ENNQDRIPFPSFTFYDKLSKLK 257
[132][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 272 bits (696), Expect = 1e-71
Identities = 137/202 (67%), Positives = 156/202 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 99
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP+ I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 100 DIILPPSVEIVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPV 159
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 160 RNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 220 QENKNRFTSPLLSFQKRLTNLK 241
[133][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 271 bits (692), Expect = 4e-71
Identities = 136/202 (67%), Positives = 155/202 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQ 99
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 100 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 159
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 160 RNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 220 QENQNRFTSPLLSFQKRLTNLK 241
[134][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 270 bits (691), Expect = 5e-71
Identities = 136/202 (67%), Positives = 155/202 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQ 99
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 100 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 159
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 160 RNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 220 QENKNRFTSPLLSFQKRLTNLK 241
[135][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 270 bits (689), Expect = 9e-71
Identities = 136/202 (67%), Positives = 155/202 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQ 99
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 100 DIILPPSVEIVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 159
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 160 RNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 220 QENKNRFTSPLLSFQKRLTNLK 241
[136][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 268 bits (686), Expect = 2e-70
Identities = 135/202 (66%), Positives = 154/202 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ
Sbjct: 148 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 207
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 208 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 267
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 268 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 327
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 328 QENKNRFTSPLLSFQKRLTNLK 349
[137][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 268 bits (686), Expect = 2e-70
Identities = 135/202 (66%), Positives = 154/202 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ
Sbjct: 60 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 180 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 240 QENKNRFTSPLLSFQKRLTNLK 261
[138][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 268 bits (686), Expect = 2e-70
Identities = 135/202 (66%), Positives = 154/202 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ
Sbjct: 169 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 228
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 229 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 288
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 289 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 348
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 349 QENKNRFTSPLLSFQKRLTNLK 370
[139][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 268 bits (686), Expect = 2e-70
Identities = 135/202 (66%), Positives = 154/202 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 99
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 100 DIILPPSVEIVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 159
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 160 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 220 QENKNRFTSPLLSFQKRLTNLK 241
[140][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 268 bits (686), Expect = 2e-70
Identities = 135/202 (66%), Positives = 154/202 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ
Sbjct: 60 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 180 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 240 QENKNRFTSPLLSFQKRLTNLK 261
[141][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 268 bits (685), Expect = 3e-70
Identities = 140/200 (70%), Positives = 156/200 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC KGP +VTAQ
Sbjct: 60 TCITRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYGTCDASICIKGPRHVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA +TEPI IGL+IER+RGY +F DG Y IDA+FMPV
Sbjct: 120 DIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EA+R LID FIPF H EEE L
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYL 237
Query: 68 ENNEHKVTLPLFTCHDLLAK 9
+ EH + L ++ + K
Sbjct: 238 ADAEHTIPLSSLIFYNKVTK 257
[142][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 267 bits (683), Expect = 4e-70
Identities = 134/202 (66%), Positives = 154/202 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ
Sbjct: 169 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 228
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 229 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 288
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI + NGN + EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 289 RNVNYSIFACGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 348
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 349 QENKNRFTSPLLSFQKRLTNLK 370
[143][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 266 bits (680), Expect = 1e-69
Identities = 134/202 (66%), Positives = 153/202 (75%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 99
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 100 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 159
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI + NGN K EILFLEIWTNGSLTP EALYEASRNLIDLF+PFLH EEE F
Sbjct: 160 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
+ N+++ T PL + L K
Sbjct: 220 QENKNRFTSPLLSFQKRLTNLK 241
[144][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 264 bits (674), Expect = 5e-69
Identities = 139/199 (69%), Positives = 157/199 (78%), Gaps = 5/199 (2%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKFEKI HEY+TIVGIQE ++EILMNLKEIVL+SNL G RDASIC +GP VTAQ
Sbjct: 60 TCITHAKFEKIPHEYTTIVGIQESIYEILMNLKEIVLRSNLDGTRDASICVRGPRDVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIF 258
+IILP S IVDNTQHI +TEPI CIGLQI+R+RGY +I NF D Y IDA+F
Sbjct: 120 DIILPNSAAIVDNTQHIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVF 179
Query: 257 MPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
+PV+N NHSIHSY NG+ E+LFLEIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE
Sbjct: 180 LPVKNVNHSIHSYENGS--HEMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEN 237
Query: 77 LNFEN--NEHKVTLPLFTC 27
+FEN NEH LP+ C
Sbjct: 238 FHFENNQNEHTDELPIDLC 256
[145][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 264 bits (674), Expect = 5e-69
Identities = 130/199 (65%), Positives = 162/199 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AK EK++HEYS I+GI+E VH+IL+NLKEIVL+S+ YG R+ASIC GP VTAQ
Sbjct: 60 TCITHAKLEKVTHEYSAIIGIEESVHDILINLKEIVLRSDPYGTREASICIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA++T+ I I L IE+DRGYRI + KN+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVRIIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNAN+SIHSY NGN+ QEILFLEIWTNGSL P+EALY ASRNLIDLFIPFL AEE+ ++
Sbjct: 180 RNANYSIHSYGNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLA 12
+N++ +P F+ ++ A
Sbjct: 240 MDNQNGSNMPSFSFSNISA 258
[146][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 263 bits (673), Expect = 6e-69
Identities = 137/190 (72%), Positives = 152/190 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK SHEYSTI GIQE VHEILMNLKEIVL+SNLY DASIC KGP +VTAQ
Sbjct: 60 TCITRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA +TEPI IGL+IER+RGY +F DGSY IDA+FMPV
Sbjct: 120 DIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+E++R LID FIPF EEE L
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYL 237
Query: 68 ENNEHKVTLP 39
+ +H + LP
Sbjct: 238 ADAKHTIXLP 247
[147][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 263 bits (673), Expect = 6e-69
Identities = 137/190 (72%), Positives = 152/190 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K EK SHEYSTI GIQE VHEILMNLKEIVL+SNLY DASIC KGP +VTAQ
Sbjct: 60 TCITRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPP V IVDNTQHIA +TEPI IGL+IER+RGY +F DGSY IDA+FMPV
Sbjct: 120 DIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+E++R LID FIPF EEE L
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYL 237
Query: 68 ENNEHKVTLP 39
+ +H + LP
Sbjct: 238 ADAKHTIPLP 247
[148][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 263 bits (671), Expect = 1e-68
Identities = 132/191 (69%), Positives = 154/191 (80%), Gaps = 3/191 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKFEKI HEY+T+VGIQE V+EI+MNLKEIVL+SNLYG RDASIC +GP VTAQ
Sbjct: 60 TCITYAKFEKIPHEYTTLVGIQESVYEIVMNLKEIVLRSNLYGTRDASICVRGPRDVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRIN---TLKNFQDGSYNIDAIF 258
+IILPPSV IVDNTQHI +TEPI C+GLQIER+RGY + + D Y IDA+F
Sbjct: 120 DIILPPSVAIVDNTQHIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVF 179
Query: 257 MPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
MPV+N NHSIH+Y NG+ E+LF EIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE
Sbjct: 180 MPVKNVNHSIHAYENGS--HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEN 237
Query: 77 LNFENNEHKVT 45
+ ENN+++ T
Sbjct: 238 SHLENNQNQHT 248
[149][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 261 bits (668), Expect = 2e-68
Identities = 135/189 (71%), Positives = 156/189 (82%), Gaps = 3/189 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT A+FEKI HEY+T VGIQE V+EI+MNLKEIVL+S+LYG RDASIC +GP VTAQ
Sbjct: 60 TCITHAQFEKIPHEYTTRVGIQESVYEIVMNLKEIVLRSSLYGTRDASICVRGPRDVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQD-GSYNIDAIF 258
+IILPPSV IVDNTQHI +TEPI+ C+ LQIER+RGY RI T N D Y IDA+F
Sbjct: 120 DIILPPSVSIVDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVF 179
Query: 257 MPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
MPV+N NHSIHSY NG+ E+LF EIWTNGSLTPKEAL EASR LI+LFIPFLHAEEEK
Sbjct: 180 MPVKNVNHSIHSYENGS--HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEK 237
Query: 77 LNFENNEHK 51
+FENN+++
Sbjct: 238 PHFENNQNE 246
[150][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 258 bits (659), Expect = 3e-67
Identities = 134/199 (67%), Positives = 155/199 (77%), Gaps = 5/199 (2%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF+KI HEY+T+VGIQE ++EILMNLKEIVL+S+LYG RDASIC +GP VTAQ
Sbjct: 60 TCITHAKFDKIPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIF 258
+IILP S IVDNTQHI +TEPI C+GLQIER+RGY +I L N D Y ID++F
Sbjct: 120 DIILPTSATIVDNTQHIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVF 179
Query: 257 MPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
MPV+N NHSIHSY NG +LFLEIWTNGSLTPKEAL EASR L +LFIPFLHAEE+
Sbjct: 180 MPVKNVNHSIHSYENG--IHAMLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQN 237
Query: 77 LNFEN--NEHKVTLPLFTC 27
+FEN NEH LP+ C
Sbjct: 238 FHFENNQNEHTDELPIDFC 256
[151][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 257 bits (657), Expect = 5e-67
Identities = 129/180 (71%), Positives = 143/180 (79%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ
Sbjct: 169 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 228
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPV
Sbjct: 229 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 288
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 289 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 348
[152][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 257 bits (657), Expect = 5e-67
Identities = 129/201 (64%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[153][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 257 bits (657), Expect = 5e-67
Identities = 129/202 (63%), Positives = 158/202 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
NN+ + F +L T+
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDTR 261
[154][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 256 bits (655), Expect = 8e-67
Identities = 129/201 (64%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[155][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 256 bits (655), Expect = 8e-67
Identities = 129/201 (64%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[156][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 256 bits (655), Expect = 8e-67
Identities = 129/201 (64%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPKNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[157][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 256 bits (655), Expect = 8e-67
Identities = 129/201 (64%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[158][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 256 bits (654), Expect = 1e-66
Identities = 127/201 (63%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YG+R+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGVREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN +P F +L T
Sbjct: 240 MNNRKGSNMPPFPLSHVLTDT 260
[159][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 256 bits (653), Expect = 1e-66
Identities = 129/201 (64%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F LL T
Sbjct: 240 MNNKKGSNMLPFPLSHLLTDT 260
[160][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 256 bits (653), Expect = 1e-66
Identities = 129/201 (64%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F LL T
Sbjct: 240 MNNKKGSNMLPFPLSHLLTDT 260
[161][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 256 bits (653), Expect = 1e-66
Identities = 129/201 (64%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F LL T
Sbjct: 240 MNNKKGSNMLPFPLSHLLTDT 260
[162][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 256 bits (653), Expect = 1e-66
Identities = 129/201 (64%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F LL T
Sbjct: 240 MNNKKGSNMLPFPLSHLLTDT 260
[163][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 256 bits (653), Expect = 1e-66
Identities = 129/201 (64%), Positives = 157/201 (78%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F LL T
Sbjct: 240 MNNKKGSNMLPFPLSHLLTDT 260
[164][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 255 bits (651), Expect = 2e-66
Identities = 127/202 (62%), Positives = 157/202 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDL IPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKTK 3
NN +P F +L T+
Sbjct: 240 MNNRKGSNMPPFPLSHVLTDTR 261
[165][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 255 bits (651), Expect = 2e-66
Identities = 128/201 (63%), Positives = 156/201 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+ N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDVNYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[166][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 254 bits (649), Expect = 4e-66
Identities = 128/201 (63%), Positives = 156/201 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
N + + F +L T
Sbjct: 240 MNKKKGSNMLPFPLSHVLTDT 260
[167][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 254 bits (649), Expect = 4e-66
Identities = 128/201 (63%), Positives = 156/201 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
N + + F +L T
Sbjct: 240 MNKKKGSNMLPFPLSHVLTDT 260
[168][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 254 bits (649), Expect = 4e-66
Identities = 128/201 (63%), Positives = 156/201 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
N + + F +L T
Sbjct: 240 MNKKKGSNMLPFPLSHVLTDT 260
[169][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 253 bits (646), Expect = 8e-66
Identities = 127/201 (63%), Positives = 156/201 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[170][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 253 bits (646), Expect = 8e-66
Identities = 127/201 (63%), Positives = 156/201 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[171][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 253 bits (646), Expect = 8e-66
Identities = 127/201 (63%), Positives = 156/201 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[172][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 252 bits (644), Expect = 1e-65
Identities = 129/191 (67%), Positives = 152/191 (79%), Gaps = 3/191 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF+KI HEY+T+VGIQE ++EILMNLKEIVL+S+LYG RDASIC +GP VT+Q
Sbjct: 60 TCITHAKFDKIPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTSQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIF 258
+IILP IVDNTQHI +TEPI C+GLQIER+RGY +I L N D Y IDA+F
Sbjct: 120 DIILPTFATIVDNTQHIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVF 179
Query: 257 MPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
MPV+N NHSIHSY NG +LFLEIWTNGSLTPKEAL ASR LI+LFIPFLHAEE+
Sbjct: 180 MPVKNVNHSIHSYENG--IHAMLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQN 237
Query: 77 LNFENNEHKVT 45
+FENN+++ T
Sbjct: 238 CHFENNQNEHT 248
[173][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 251 bits (642), Expect = 2e-65
Identities = 126/201 (62%), Positives = 155/201 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+ N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDVNYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[174][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 251 bits (641), Expect = 3e-65
Identities = 126/201 (62%), Positives = 155/201 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV +D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKTIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F +L T
Sbjct: 240 MNNKKGSNMLPFPLSHVLTDT 260
[175][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 251 bits (641), Expect = 3e-65
Identities = 127/201 (63%), Positives = 155/201 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR K E I HEYS I+GI+E VH+ILMNLK IVL+S+ YGI +ASI GP VTAQ
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKXIVLRSDSYGIXEASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN+ + F LL T
Sbjct: 240 MNNKKGSNMLPFPLSHLLTDT 260
[176][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 251 bits (640), Expect = 4e-65
Identities = 126/201 (62%), Positives = 154/201 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR ASIC GP VTAQ
Sbjct: 60 TCITHVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIRGASICIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EAL EASR LI+LFIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNIDG 239
Query: 68 ENNEHKVTLPLFTCHDLLAKT 6
NN +P F +L T
Sbjct: 240 MNNRKGSNMPPFPLSHVLTDT 260
[177][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 251 bits (640), Expect = 4e-65
Identities = 133/201 (66%), Positives = 153/201 (76%), Gaps = 7/201 (3%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF KI HEY+TI GI+E ++EILMNLKEIVL+SNLYG RDASIC +GP VTAQ
Sbjct: 60 TCITHAKFAKIPHEYTTIAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRIN----TLKNFQDGSYNIDAI 261
+IILPPS IVDNTQHI +TEPI C+GL+IER RGY I T D +Y IDA+
Sbjct: 120 DIILPPSTAIVDNTQHIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAV 179
Query: 260 FMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 81
FMPVRN NHSIHSY G+ E+LFLEIWTNGSLTPKEAL EASR LI+L +PFLHAEEE
Sbjct: 180 FMPVRNVNHSIHSYERGS--HEMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEE 237
Query: 80 KLNF-ENNEHKVT--LPLFTC 27
ENN+++ T LP+ C
Sbjct: 238 NFYLVENNQNQDTEELPIDLC 258
[178][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 248 bits (634), Expect = 2e-64
Identities = 122/183 (66%), Positives = 149/183 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITR E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITRVTLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID FIPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNIDG 239
Query: 68 ENN 60
NN
Sbjct: 240 INN 242
[179][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 247 bits (631), Expect = 5e-64
Identities = 121/183 (66%), Positives = 149/183 (81%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT K + I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITHVKLDNIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDL IPFLH EE+ ++
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDG 239
Query: 68 ENN 60
NN
Sbjct: 240 MNN 242
[180][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 247 bits (631), Expect = 5e-64
Identities = 132/203 (65%), Positives = 151/203 (74%), Gaps = 9/203 (4%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF KI HEY+T+ GI+E ++EILMNLKEIVL+SNLYG RDASIC +GP VTAQ
Sbjct: 60 TCITHAKFAKIPHEYTTMAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRIN----TLKNFQDGSY--NID 267
+IILPPS IVDNTQHI +TEPI C+ L+IER RGY I T D Y ID
Sbjct: 120 DIILPPSTAIVDNTQHIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPID 179
Query: 266 AIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 87
A+FMPVRN NHSI+SY G+ +EILFLEIWTNGSLTPKEAL EASR LI+LFIPFLHAE
Sbjct: 180 AVFMPVRNVNHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAE 237
Query: 86 EEK---LNFENNEHKVTLPLFTC 27
EE L N+H LP+ +C
Sbjct: 238 EENFYLLENNQNQHTEELPIDSC 260
[181][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 236 bits (602), Expect = 1e-60
Identities = 122/201 (60%), Positives = 152/201 (75%), Gaps = 2/201 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF+K++HEYSTI GIQE VH+IL+NLKEIVL+SN Y + A I GP VTAQ
Sbjct: 60 TCITCAKFKKVTHEYSTIAGIQESVHDILINLKEIVLRSNSYETQKAFISILGPKKVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQ+IA +T+ I L I L+IE+D GYRI DG + IDAIFMP+
Sbjct: 120 DIILPPSVKIIDTTQYIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPI 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-- 75
RNAN+S+HS+ + N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE++++
Sbjct: 180 RNANYSVHSFEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEIIN 239
Query: 74 NFENNEHKVTLPLFTCHDLLA 12
EN + F+ LA
Sbjct: 240 GLENKYESNNMSYFSSFSPLA 260
[182][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 236 bits (601), Expect = 1e-60
Identities = 121/192 (63%), Positives = 149/192 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKFE ++HEYS I+GI+E VH+I +NL+ IVL+S+ YGIR+ASI GP VTAQ
Sbjct: 60 TCITHAKFENMTHEYSAIMGIEESVHDISINLRGIVLQSDPYGIREASIYSVGPRDVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQHIA++ E I I QI +DRGYRI + N +DG ++ DA+ MPV
Sbjct: 120 DIILPPSVRIIDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPV 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RNAN+SIHSY NGNE QEILF EIWTNGSL P EALYEASRNLIDLFIPF+ AEE+ ++
Sbjct: 180 RNANYSIHSYGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNIDG 239
Query: 68 ENNEHKVTLPLF 33
+N + + LF
Sbjct: 240 IDNWNGYNMSLF 251
[183][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 234 bits (598), Expect = 3e-60
Identities = 118/187 (63%), Positives = 148/187 (79%), Gaps = 1/187 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT A+ +K++HEYSTIVGIQE H+IL+NLKEIVLKSN Y + A + GP +TAQ
Sbjct: 60 TCITCARSKKVTHEYSTIVGIQESAHDILINLKEIVLKSNSYETQKAFLSILGPKKITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQ+IA +T+PI L I L+I++D GYRI DG ++IDAIFMP+
Sbjct: 120 DIILPPSVKIIDTTQYIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPI 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLN 72
RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLH E +E +N
Sbjct: 180 RNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKKETIN 239
Query: 71 FENNEHK 51
E+K
Sbjct: 240 GLKTEYK 246
[184][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 233 bits (594), Expect = 9e-60
Identities = 117/177 (66%), Positives = 143/177 (80%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT A F+K++HEYSTIVGIQE VH+IL+NLKEIVLKSN + A I GP +TAQ
Sbjct: 60 TCITCAIFKKVTHEYSTIVGIQESVHDILINLKEIVLKSNSSETQKAFISILGPKKITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQ+IA +T+PI L I L+IE+D GYRI DG + IDAIFMP+
Sbjct: 120 DIILPPSVKIIDTTQYIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPI 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLH E+++
Sbjct: 180 RNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKKE 236
[185][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 231 bits (590), Expect = 3e-59
Identities = 117/200 (58%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT A+F++++HEYSTI+GIQE VH++L+NL EIVL+S+ Y + A I GP VTAQ
Sbjct: 60 TCITCAEFKRVTHEYSTILGIQESVHDVLINLGEIVLRSDSYETQKAFISILGPKKVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQ+IA VT+ I L I L+IE+D GYRI DG++ +DA+FMP+
Sbjct: 120 DIILPPSVKIIDTTQYIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPI 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
RN N+S+HS+ NGNE QEILFLEIWTNGS+TPKEALYEASR+LI+LFIPFLHAE+++ +
Sbjct: 180 RNVNYSVHSFENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKEFIY 239
Query: 68 E-NNEHKVTLPLFTCHDLLA 12
N ++ + F+ L A
Sbjct: 240 GLKNTYESNMSYFSSPSLSA 259
[186][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 226 bits (576), Expect = 1e-57
Identities = 118/193 (61%), Positives = 141/193 (73%), Gaps = 10/193 (5%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAKF IS+EYS I+GI+E +HEILMNLKEIVL+S+ YGIR+ SI GP VTAQ
Sbjct: 60 TCITRAKFHNISNEYSVIIGIEESIHEILMNLKEIVLRSDAYGIREGSIHVVGPKKVTAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS---------- 279
+I+LPPSV I+D TQHIAN+ + I L I LQIE+ RGY I N+
Sbjct: 120 DIMLPPSVRIIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFV 179
Query: 278 YNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF 99
+ IDA F PV+N N+SIHSY + NE QEILFLEIWTNG L PKEALYEASRNLID F+PF
Sbjct: 180 FPIDAAFAPVQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPF 239
Query: 98 LHAEEEKLNFENN 60
L+A+EE + N+
Sbjct: 240 LNAKEENSDGTNS 252
[187][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 226 bits (576), Expect = 1e-57
Identities = 108/179 (60%), Positives = 142/179 (79%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT KFEK++HEYSTI+GIQE VH+IL+NLKEIVLKSN Y ++ASI GP VTA+
Sbjct: 60 TCITYVKFEKVTHEYSTIMGIQESVHDILINLKEIVLKSNSYKTQEASISILGPKRVTAE 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I+LP SV ++D TQHIA +T+ + I L I +DRGYRI ++DG++ ++A F P+
Sbjct: 120 DIVLPSSVEVIDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPI 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 72
RNAN+S+HS+ N EKQEILF+E+WTNGSLTPKEAL EAS++LI+LFIP LH ++E+ N
Sbjct: 180 RNANYSVHSFENEKEKQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKEREN 238
[188][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 225 bits (574), Expect = 2e-57
Identities = 114/186 (61%), Positives = 145/186 (77%), Gaps = 2/186 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKS--NLYGIRDASICFKGPGYVT 435
TCITRAK EK++HEYSTI+GIQE V +IL+NLKEIVLKS N + A + GP VT
Sbjct: 61 TCITRAKSEKVTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVT 120
Query: 434 AQNIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFM 255
A++II PPSV ++D TQ+IA +T+ I L I L+IE+D GYR DG +++DA+F
Sbjct: 121 ARDIIFPPSVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFT 180
Query: 254 PVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 75
P+RNAN+S+HS+ N NE QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE+E++
Sbjct: 181 PIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
Query: 74 NFENNE 57
+ NE
Sbjct: 241 MHDKNE 246
[189][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 223 bits (568), Expect = 9e-57
Identities = 115/189 (60%), Positives = 145/189 (76%), Gaps = 1/189 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T IT AKFEK++HEYSTI GIQE VH+I +N KEIVL+SN + A I GP +TAQ
Sbjct: 60 TSITCAKFEKVTHEYSTIAGIQESVHDISINSKEIVLESNSSETQKAFISILGPKKITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D Q+IA +T+ IQL I L+IE+D GYRI + + IDAIFMP+
Sbjct: 120 DIILPPSVKIIDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPI 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLN 72
RNAN+S+HS+ N N+ QE+LF+EIWTNGS+TPK+ALYEASR+LIDLFIPFLHAE E +N
Sbjct: 180 RNANYSVHSFENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREIIN 239
Query: 71 FENNEHKVT 45
NE+K++
Sbjct: 240 ELENEYKLS 248
[190][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 221 bits (563), Expect = 4e-56
Identities = 111/180 (61%), Positives = 142/180 (78%), Gaps = 2/180 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKS--NLYGIRDASICFKGPGYVT 435
TCITRAK EK++HEYSTI+GIQE V +IL+NLKEIVLKS N + A + GP VT
Sbjct: 61 TCITRAKSEKVTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVT 120
Query: 434 AQNIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFM 255
A++I+ PPSV ++D TQ+IA +T+ I L I L+IE+D GYR DG +++DA+F
Sbjct: 121 ARDIVFPPSVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFT 180
Query: 254 PVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 75
P+RNAN+S+HS+ N NE QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE+E++
Sbjct: 181 PIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
[191][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 219 bits (558), Expect = 1e-55
Identities = 105/184 (57%), Positives = 143/184 (77%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T IT AK + + HEYSTI+GI+E +++IL+N KEIVL+S+ Y + A I GP +TA+
Sbjct: 60 TAITYAKSKNVIHEYSTIIGIEESINDILINFKEIVLRSDSYETQKAYISITGPKDITAE 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I+LPPSV +D++QHIA +T+ I L I ++I++DRGYRI K Q G + IDA+FMP+
Sbjct: 120 DILLPPSVQAIDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPI 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
R AN+S+HS+ N + QEILF+EIWT+GSLTPKEALYEASRNLIDLF+PFLH EEE++
Sbjct: 180 RKANYSVHSFGNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEIIS 239
Query: 68 ENNE 57
+ +E
Sbjct: 240 DRDE 243
[192][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 207 bits (526), Expect = 7e-52
Identities = 109/186 (58%), Positives = 139/186 (74%), Gaps = 2/186 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T IT AKF+ + HEYST+VGI+E +H+IL+NLKEIVL+S+ Y + ASI GP VTA
Sbjct: 60 TSITYAKFKNVVHEYSTLVGIKESIHDILINLKEIVLQSDSYETQKASISILGPRDVTAG 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I+LP SV I+D +QHIA +T I L + L+IERD GYR LK Q G + IDA+F P+
Sbjct: 120 DILLPTSVKIIDASQHIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPI 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK--L 75
RNAN+SIHS+ + N+ +EILFLE+WTNGSLTP AL EASR+LIDLFI FL+ E+E+
Sbjct: 180 RNANYSIHSFESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIK 239
Query: 74 NFENNE 57
ENNE
Sbjct: 240 EIENNE 245
[193][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 205 bits (522), Expect = 2e-51
Identities = 99/192 (51%), Positives = 142/192 (73%), Gaps = 1/192 (0%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
IT A+FE ++HEYST+ GIQE +H+IL+NLKEIVL+S+ G + A + GP VTA +I
Sbjct: 62 ITSARFEGVAHEYSTVAGIQETIHDILVNLKEIVLRSDSDGNQKAILSVTGPKRVTAGDI 121
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRN 243
LPPSV ++D++Q+I +T+PI + I L IE D GYRI +L ++DG + +DA+FMPVRN
Sbjct: 122 SLPPSVKVIDDSQYIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRN 181
Query: 242 ANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFE 66
N+S+H + +G E +EILF+E+WTNGSLTP EA+ +AS++ IDL PFLH + E + +FE
Sbjct: 182 VNYSVHPFGSGKEMREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHEDIPDFE 241
Query: 65 NNEHKVTLPLFT 30
+N +L F+
Sbjct: 242 SNRDSSSLMKFS 253
[194][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 202 bits (515), Expect = 1e-50
Identities = 100/178 (56%), Positives = 137/178 (76%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
IT AK +K+ HEYSTI+G+QE +H+IL+NLKEIVLKS + + A I GP +TAQ+I
Sbjct: 62 ITYAKIKKVKHEYSTIIGLQESIHDILINLKEIVLKSESFEPQKAYISVLGPKKITAQDI 121
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRN 243
P + I+ Q+IA + + I L I L IE+DRGYRI L+ +Q+G + +DA+FMP+RN
Sbjct: 122 KGPSCIKIMIIAQYIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRN 181
Query: 242 ANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 69
AN+S+HS+ + + +EILFLEIWT+GSLTPKEALYEASRNLIDLFIP +++E+++ NF
Sbjct: 182 ANYSVHSFESEKKIKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNF 239
[195][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 196 bits (499), Expect = 9e-49
Identities = 108/203 (53%), Positives = 138/203 (67%), Gaps = 3/203 (1%)
Frame = -2
Query: 608 TCITRAKFEKIS-HEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTA 432
T IT AK EK + H+YST+ GI+E VH+IL+NLKEIVLKS LYGI ASIC GP VTA
Sbjct: 60 TSITYAKIEKTTVHDYSTMSGIKESVHDILLNLKEIVLKSELYGIHKASICTVGPRNVTA 119
Query: 431 QNIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIF 258
Q+IILP S+ I+D TQHIA++T+ + + L IER++GY I + + ++G + IDA
Sbjct: 120 QDIILPSSIKIIDGTQHIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPC 179
Query: 257 MPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
MPVRN N SIHSY + N+ +E+L EIWTNG LTP+EA YEA LIDL +P LH EE+
Sbjct: 180 MPVRNVNFSIHSYKSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED- 238
Query: 77 LNFENNEHKVTLPLFTCHDLLAK 9
+ LP+ T D L K
Sbjct: 239 --MNGAKDFFALPILTRMDKLGK 259
[196][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 196 bits (498), Expect = 1e-48
Identities = 97/186 (52%), Positives = 138/186 (74%), Gaps = 2/186 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKFE I+HEYST+ GIQE VH+IL+N KEIVLKS + A I GP VTAQ
Sbjct: 63 TCITCAKFENITHEYSTMDGIQESVHDILINSKEIVLKSKSSEAQKAFISIVGPRRVTAQ 122
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I LP SV ++D QHIA +T+ ++L I L+IE+D GYR + ++DG++ +DA+F P+
Sbjct: 123 DIELPTSVEVIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPI 182
Query: 248 RNANHSIHSYVNGNEK--QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 75
R+ N+SIH + + ++ +E+L EIW+NGS+TP+EA+YEASR+ I+LF+PFL AE+EK
Sbjct: 183 RSVNYSIHCFESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKEKE 242
Query: 74 NFENNE 57
+F+ +
Sbjct: 243 DFKGED 248
[197][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 192 bits (487), Expect = 2e-47
Identities = 99/187 (52%), Positives = 136/187 (72%), Gaps = 1/187 (0%)
Frame = -2
Query: 608 TCITRAKFEK-ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTA 432
T IT A+F+K I HEYS+I+GI+E VH+ILMNLK+IVL+S LYGI +ASIC GP VTA
Sbjct: 60 TYITYARFQKNILHEYSSIIGIKESVHDILMNLKQIVLRSELYGIHEASICTVGPKNVTA 119
Query: 431 QNIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMP 252
Q+IILP S+ I+D+TQHIA++T+ I + L+IE+ + Y I +K +D + ID + +P
Sbjct: 120 QDIILPSSIQIIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLP 179
Query: 251 VRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 72
V+N N SIHSY + + QE+L EIWTNG LTP+E +YEA +L+DL IP L E+ N
Sbjct: 180 VQNVNFSIHSYKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQ---N 236
Query: 71 FENNEHK 51
+N++ K
Sbjct: 237 IKNSQKK 243
[198][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 191 bits (485), Expect = 4e-47
Identities = 96/192 (50%), Positives = 134/192 (69%), Gaps = 1/192 (0%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
IT AKFE + HEYSTI GIQE +H+I +NLKE V +S+ ++A + GP VTA +
Sbjct: 62 ITCAKFEGVIHEYSTITGIQETIHDISVNLKETVPRSDSNDSKEAFLSVTGPKRVTAGDT 121
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRN 243
LPPSV I+D++Q+I +T+PI + I +IE+D GYRI ++DG + +DA+ MPVRN
Sbjct: 122 SLPPSVKIIDDSQYIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRN 181
Query: 242 ANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFE 66
N+S+H + +G E +EI F+EIWTNGS TP EAL EAS+NLIDL IPFLH + E + +FE
Sbjct: 182 VNYSVHPFGSGREMREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHEDVPHFE 241
Query: 65 NNEHKVTLPLFT 30
+ + L + +
Sbjct: 242 DEQDSSDLTILS 253
[199][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 188 bits (478), Expect = 3e-46
Identities = 94/182 (51%), Positives = 130/182 (71%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
IT A I HEYS I GI+E +H+IL+NLKEI+L+S+ + A IC GP VTA++I
Sbjct: 63 ITSATIRGIKHEYSAINGIRESIHDILINLKEIILRSDSPEPQKAYICVSGPSEVTARDI 122
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRN 243
+ ++DNTQ++A +T I L I L IE+DRGYR+ + +++G + IDA+FMP+RN
Sbjct: 123 QGSSLIHVIDNTQYVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRN 182
Query: 242 ANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 63
AN+S+HS+ + + +EIL LEIWTNGSLTP++ALYEASRNLIDLFIP ++ E+ N
Sbjct: 183 ANYSVHSFGSREKTKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMNPGGEEKNSGT 242
Query: 62 NE 57
E
Sbjct: 243 KE 244
[200][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 186 bits (472), Expect = 1e-45
Identities = 98/191 (51%), Positives = 131/191 (68%), Gaps = 2/191 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLY-GIRDASICFKGPGYVTA 432
T IT A+F + HEYSTI G+QE +H++L+NLKEIVL+ + I++A + GP VTA
Sbjct: 60 TSITCARFCGVVHEYSTITGLQETIHDVLVNLKEIVLRGDSKEDIQEAFLSVTGPKEVTA 119
Query: 431 QNIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMP 252
++ LPP V +DN+Q+IA +T+PI L I L+IE+D GYRI L G + IDA+FMP
Sbjct: 120 GDLSLPPGVEAIDNSQYIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMP 179
Query: 251 VRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 72
VRN N+SIH + +G QEILF+EIWTNGSLTP EAL +AS L+DL FL+ ++
Sbjct: 180 VRNVNYSIHLFGSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVS 239
Query: 71 -FENNEHKVTL 42
FEN E + L
Sbjct: 240 LFENGEDSLDL 250
[201][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 174 bits (440), Expect = 7e-42
Identities = 90/186 (48%), Positives = 132/186 (70%), Gaps = 2/186 (1%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
++ A F+ + EY+ + G++E +IL+NLKE+V++S+ + A I GPG VTA +I
Sbjct: 174 VSCATFKNVKSEYAAMKGVEETPMDILVNLKELVIRSDSDEPQKAIISAIGPGPVTAGDI 233
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRN 243
+LPPS+ + D TQHIA +T+ + L I L +E+ GYR+ DG + ID++FMPVRN
Sbjct: 234 VLPPSLEVTDPTQHIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRN 293
Query: 242 ANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NF 69
AN+S+HSY + + QEILFLEIWTNGS+TP+EAL+EA+R LIDLF+PFLH +++++ N
Sbjct: 294 ANYSVHSYESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKKEVTNS 353
Query: 68 ENNEHK 51
HK
Sbjct: 354 ATKMHK 359
[202][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 168 bits (426), Expect = 3e-40
Identities = 93/176 (52%), Positives = 123/176 (69%), Gaps = 5/176 (2%)
Frame = -2
Query: 605 CITRAKF--EKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGI-RDASICFKGPGYVT 435
CIT A E+I+HEY+ I G++E VH+ILMNLKEIVLK+N + ++A I GP VT
Sbjct: 59 CITPAGSPPERINHEYTAIAGVRESVHDILMNLKEIVLKTNPFSAAQEAHIPIVGPRKVT 118
Query: 434 AQNIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFM 255
AQ+I+LPPSV +D TQHIA +T I IGL++ER G+R + +Q GS DA+FM
Sbjct: 119 AQDIVLPPSVGTMDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFM 178
Query: 254 PVRNANHSIHSYVN--GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH 93
P+R+AN+SIH + G +E+L LE T+GS TP+EA+YEASRNL +LF PF H
Sbjct: 179 PIRHANYSIHRLGSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[203][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 162 bits (409), Expect = 3e-38
Identities = 81/135 (60%), Positives = 103/135 (76%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT AKF+K++HEYSTI+GIQE VH+IL+N KEIVLKSN Y + A I GP +TAQ
Sbjct: 60 TCITCAKFKKVTHEYSTILGIQESVHDILINSKEIVLKSNSYETQKAFISILGPKKITAQ 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+IILPPSV I+D TQ+IA +T+ I L I +IE+D GYRI K DG + +DA+FMP+
Sbjct: 120 DIILPPSVKIIDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSKKSTDGLFFVDAVFMPI 179
Query: 248 RNANHSIHSYVNGNE 204
RNAN+SIHS+ N N+
Sbjct: 180 RNANYSIHSFENKNK 194
[204][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 160 bits (405), Expect = 7e-38
Identities = 88/187 (47%), Positives = 121/187 (64%), Gaps = 1/187 (0%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT A SHEYST+ GI+E +H+IL+NLK+IV KS+ ++ + F GPG VTAQ
Sbjct: 57 TCITSAYVVGASHEYSTLKGIRESIHDILLNLKDIVFKSDTLERQEGILLFNGPGIVTAQ 116
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRG-YRINTLKNFQDGSYNIDAIFMP 252
+I LPP V +VDNTQ+IA + P + I + +E + +NT+ + G + +DA P
Sbjct: 117 HIKLPPVVQVVDNTQYIARLEMPTSIEIHITLENTKTCTSLNTMPTTK-GRFILDAALKP 175
Query: 251 VRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 72
VRN N+SIHS G+ +QE+L LE+WTNGSLTP+E + +AS+NL DL P L E
Sbjct: 176 VRNMNYSIHSLGEGDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKV-ERYFQ 234
Query: 71 FENNEHK 51
+ N HK
Sbjct: 235 AKQNIHK 241
[205][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 159 bits (403), Expect = 1e-37
Identities = 80/190 (42%), Positives = 119/190 (62%), Gaps = 7/190 (3%)
Frame = -2
Query: 605 CITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQN 426
CIT K + I HEY T+ G++E + +IL+NLKEIV K + I KGP +TA +
Sbjct: 58 CITSVKIDNIKHEYCTLTGVRESIQDILLNLKEIVFKGVCDKTQKGFIFVKGPKKITASD 117
Query: 425 IILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVR 246
I + P + I+D+ Q IA++TEPI + L IE+ G+R+ S++IDAIFMP+R
Sbjct: 118 IQIEPCIEILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIR 177
Query: 245 NANHSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-- 75
N N+SIH G+ K E+L LEIWTNGS+TPKEA ++AS ++++F+ ++ + ++
Sbjct: 178 NVNYSIHPVEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFLSLSNSSDNQIQE 237
Query: 74 ----NFENNE 57
NFE E
Sbjct: 238 KSTKNFEEKE 247
[206][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 155 bits (392), Expect = 2e-36
Identities = 73/178 (41%), Positives = 117/178 (65%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCIT K + HEYS++ G+QE VH+IL+NLK+I+L S+ GI + + GP V A
Sbjct: 60 TCITSVKIKNAIHEYSSLSGVQESVHDILINLKKIILSSSFSGIFEGFLSVVGPKTVLAS 119
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
++ LP + IV+ Q+IA V +PI + + I++ +GY + + + G + +D +F+P+
Sbjct: 120 DLNLPSFIKIVNPDQYIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPI 179
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 75
R+ N+SIHS+ + +E L +E+WTNGS+ PKEA+ EAS NL++LF P + E ++L
Sbjct: 180 RSVNYSIHSFEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQEYQQL 237
[207][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 150 bits (380), Expect = 6e-35
Identities = 79/176 (44%), Positives = 112/176 (63%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T I AK +HEYST+ GIQE +H+IL+NLK++++K+ + + I GP VTA
Sbjct: 62 TAIVAAKIYGAAHEYSTLEGIQESIHDILLNLKQVIIKNKICEFQKCLISIIGPKKVTAA 121
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I L ++ I + HIA +T+PI+ + L I + RGY I + QDG + +DA+F PV
Sbjct: 122 DIELSQNITISNPYHHIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPV 181
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 81
RN N SIH N E+QE L LEIWTNG++TP +AL + S NLI LF+P E++
Sbjct: 182 RNVNFSIH---NLAEQQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDD 234
[208][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 149 bits (375), Expect = 2e-34
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Frame = -2
Query: 602 ITRAKFEK--ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
IT A F+ I HEY + GIQE V +IL+N++++ + SN + + A I GP V A
Sbjct: 161 ITCATFKDMGIVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAG 220
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I+ PPS+V+ D +Q+IA VT I + +++E+D GYRI +G + ID++FMPV
Sbjct: 221 DILCPPSLVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPV 280
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 87
AN+S+HS+ + +EILFLEI+TNGS++P+EAL EA+R+LIDL +P L +E
Sbjct: 281 VQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334
[209][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 149 bits (375), Expect = 2e-34
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Frame = -2
Query: 602 ITRAKFEK--ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
IT A F+ I HEY + GIQE V +IL+N++++ + SN + + A I GP V A
Sbjct: 248 ITCATFKDMGIVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAG 307
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 249
+I+ PPS+V+ D +Q+IA VT I + +++E+D GYRI +G + ID++FMPV
Sbjct: 308 DILCPPSLVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPV 367
Query: 248 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 87
AN+S+HS+ + +EILFLEI+TNGS++P+EAL EA+R+LIDL +P L +E
Sbjct: 368 VQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421
[210][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 147 bits (370), Expect = 9e-34
Identities = 87/200 (43%), Positives = 127/200 (63%), Gaps = 9/200 (4%)
Frame = -2
Query: 608 TCITRAKF--EKISHEYS--TIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGY 441
T +T KF +++ H +S TI+GI+E VH+I+MNL+EIV + L+GI A I GP
Sbjct: 60 TNVTHVKFFNKRVKHLFSSSTILGIEESVHDIIMNLREIVFRCELHGIHKAYIYTVGPKN 119
Query: 440 VTAQNIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRG---YRINTLKNFQDGSYNI 270
VTAQ+IILPP + IVD TQHIA++T+PI L + L+IE++ G I+ + +
Sbjct: 120 VTAQDIILPPFIQIVDGTQHIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPT 179
Query: 269 DAIFMPVRNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 96
+ +MPVR+ ++++ Y + + +IL E+WTNG LTPKEALYEA LIDL IP L
Sbjct: 180 EIFYMPVRSVTYNVYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLL 239
Query: 95 HAEEEKLNFENNEHKVTLPL 36
+ L+ E + K ++PL
Sbjct: 240 --DVPLLHVEGSGVKESIPL 257
[211][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 129 bits (323), Expect = 2e-28
Identities = 70/173 (40%), Positives = 108/173 (62%), Gaps = 4/173 (2%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + ++HE+ST+ G++E V EIL+N+KE+VL+SN + + +GPG VTA+
Sbjct: 69 TAVTAVRIAGVTHEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQGPGEVTAE 128
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYR---INTLKNFQDGSYNIDAIF 258
+ LP V +++ HIA + E L + I R RGYR + K+ ID++F
Sbjct: 129 KLQLPSEVEVINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDFLQIDSVF 188
Query: 257 MPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
MPVR N+++ + V + +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 189 MPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSP 241
[212][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 126 bits (316), Expect = 2e-27
Identities = 72/188 (38%), Positives = 111/188 (59%), Gaps = 4/188 (2%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + ++HE++TI G++E V EIL+NLKEIVL S + + +GP VTA
Sbjct: 51 TAVTAVRIAGVNHEFATIPGVREDVLEILLNLKEIVLNSYSNQRQIGRLLVQGPATVTAG 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIF 258
+ LP V +VD Q+IA ++ L + Q+E+ GYR N + IDA+F
Sbjct: 111 HFDLPSEVEVVDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVF 170
Query: 257 MPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 81
MPVR N+++ + V G+ +++ L L+IWTNGSLTP+EAL +A+ L+DLF+P E
Sbjct: 171 MPVRKVNYTVEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLKDITLE 230
Query: 80 KLNFENNE 57
+ + +
Sbjct: 231 SIKTDQTD 238
[213][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 124 bits (311), Expect = 6e-27
Identities = 77/174 (44%), Positives = 103/174 (59%), Gaps = 12/174 (6%)
Frame = -2
Query: 572 HEYSTIVGIQEPVHEILMNLKEIVLKSNL--------YGIRDASICFKGPGYVTAQNIIL 417
HEYST+ G++E V EIL+NLK+IV+K + ASI +GPG VTA++I
Sbjct: 72 HEYSTLDGVRESVDEILLNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGVVTAEHIKF 131
Query: 416 PPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNAN 237
P S++ VD Q IA + QLCI L I + ++ K G + IDA F PV+ AN
Sbjct: 132 PSSILAVDPDQSIATLLNETQLCIELFIRQGIAKQLTRTKKNHQGFF-IDANFTPVQKAN 190
Query: 236 HSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF----IPFLHAE 87
SIHS + Q++L LEIWTN +LTP EALY+A +L++LF P LH E
Sbjct: 191 FSIHSVGDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[214][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 123 bits (309), Expect = 1e-26
Identities = 71/163 (43%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Frame = -2
Query: 584 EKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSV 405
E+I+HEY I G++E VHE MNLKEI L ++ ++A I GPG V A++ + P S+
Sbjct: 67 ERINHEYPAIAGVRESVHETSMNLKEIALTAHPSAAQEAHIPIVGPGKVAARDTVPPSSI 126
Query: 404 VIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIH 225
I+ QH A VT I+ G ++E GYR + +Q GS DA+ MP+RNAN+SIH
Sbjct: 127 GIIYPAQHAATVTRKIRSSTGSRVEGGCGYRRRNMVEYQKGSPPPDAVSMPIRNANYSIH 186
Query: 224 SYV--NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
+G +E+ E T+GS TP EA YEASR+ +LF P
Sbjct: 187 RLESHSGGIMKEMPPPEARTDGSPTPGEATYEASRDSANLFSP 229
[215][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 123 bits (309), Expect = 1e-26
Identities = 72/187 (38%), Positives = 112/187 (59%), Gaps = 3/187 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
+ IT + ++HE+ +I G++E V E+L+NLK IVLKS + + +G VT
Sbjct: 51 SAITAVRIAGVNHEFCSIPGVKEDVLELLLNLKNIVLKSYTNEPQIGRLKIQGACKVTTA 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDG--SYNIDAIFM 255
N LP V I+ TQ++A V E L + +IE+ RGY+I K ++ IDAIFM
Sbjct: 111 NFELPSEVEIIHGTQYVATVAENAILEMEFKIEKGRGYKIIDKKQTENSIDFLPIDAIFM 170
Query: 254 PVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
PVR N+ + ++ +E +E L LEIW NGS+TP++++ +A+ L++LF PF +K
Sbjct: 171 PVRKVNYMVEEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPF-----KK 225
Query: 77 LNFENNE 57
+NFEN +
Sbjct: 226 INFENTD 232
[216][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 123 bits (308), Expect = 1e-26
Identities = 66/175 (37%), Positives = 109/175 (62%), Gaps = 6/175 (3%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + +SHE++T+ G++E V EI+M +KE++LKS + + GP +TA
Sbjct: 51 TAVTAVRIAGVSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITAS 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDA 264
+ LP V ++D TQ++A + E +L + +IER +GYR T++ ++ + ID+
Sbjct: 111 HFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIERGKGYR--TVERGREEATSLDFLQIDS 168
Query: 263 IFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
IFMPVR N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 169 IFMPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[217][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 123 bits (308), Expect = 1e-26
Identities = 66/175 (37%), Positives = 109/175 (62%), Gaps = 6/175 (3%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + +SHE++T+ G++E V EI+M +KE++LKS + + GP +TA
Sbjct: 51 TAVTAVRIAGVSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITAS 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDA 264
+ LP V ++D TQ++A + E +L + +IER +GYR T++ ++ + ID+
Sbjct: 111 HFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIERGKGYR--TVERGREEATSLDFLQIDS 168
Query: 263 IFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
IFMPVR N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 169 IFMPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[218][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 122 bits (307), Expect = 2e-26
Identities = 69/178 (38%), Positives = 107/178 (60%), Gaps = 4/178 (2%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T IT + ++HE++TI GI+E V EIL+N+KE+VLKS G + GP V +
Sbjct: 51 TAITAVRIAGVNHEFATIAGIREDVLEILLNMKEVVLKSYTPGPHIGRVMITGPSTVRSA 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIF 258
LP V VD Q+IA + + +L + +IER +GYR + S + +DA+F
Sbjct: 111 QFDLPSDVEFVDPGQYIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVF 170
Query: 257 MPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 87
MPV N+S+ + V+G+ +++ L L++WTNGS++P+EAL +A+ L+DLF P E
Sbjct: 171 MPVTKVNYSVEDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[219][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 122 bits (306), Expect = 2e-26
Identities = 79/187 (42%), Positives = 104/187 (55%), Gaps = 3/187 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T IT + + E+STI GI+E + EIL+NLK IVLKS ++ + KGP VTA
Sbjct: 51 TAITGVRIAGVRDEFSTIPGIREDILEILLNLKGIVLKSKTNDLKFGRLKIKGPAVVTAN 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFM 255
I LP V IV+ +IA +T L I +IE GY++ T IDAIFM
Sbjct: 111 CIQLPSEVEIVNPNHYIATITTSNVLEIEFKIESGTGYKLAGQTFCKKSQDYLQIDAIFM 170
Query: 254 PVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
PV+ + I + Y N N+ E LFL+IWTNGS++P+EA+ ASR +I F L E K
Sbjct: 171 PVQKVDFKIENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLL---ENK 227
Query: 77 LNFENNE 57
L E E
Sbjct: 228 LPQETKE 234
[220][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 122 bits (305), Expect = 3e-26
Identities = 68/173 (39%), Positives = 105/173 (60%), Gaps = 4/173 (2%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + ++HE+ST+ G++E V EIL+N+KE+VL+S+ + + +GPG VTA+
Sbjct: 71 TAVTAVRIAGVTHEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAE 130
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYR---INTLKNFQDGSYNIDAIF 258
+ LP V +++ HIA + E L + I R GYR + K ID++F
Sbjct: 131 KLQLPSDVEVINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDFLQIDSVF 190
Query: 257 MPVRNANHSIHSYVNGN-EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
MPVR N+++ + G +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 191 MPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAP 243
[221][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 122 bits (305), Expect = 3e-26
Identities = 62/171 (36%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
Frame = -2
Query: 605 CITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQN 426
CIT + ++HE+STI G++E V +IL+NLKEIVLK+ + + +GP V A++
Sbjct: 57 CITSVQIPGVNHEFSTIHGVREAVLDILLNLKEIVLKTQSQETQRGHLSVQGPSTVLARD 116
Query: 425 IILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIFM 255
+ LP S+ +VD Q+IA ++ + L + +E +GY++ K FQ IDA+FM
Sbjct: 117 LQLPSSIELVDPDQYIATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFM 176
Query: 254 PVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
PV N+++ G+ QE + +E+WTNGS+ ++A+ + +I+LF P
Sbjct: 177 PVTKVNYTVEENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSP 227
[222][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 121 bits (304), Expect = 4e-26
Identities = 64/174 (36%), Positives = 107/174 (61%), Gaps = 5/174 (2%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + + +SHE++T+ G++E V EILM +KE++LK+ + + GP VTA
Sbjct: 51 TAVTAVRIDGVSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVNGPVTVTAA 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDA 264
+ LP V ++D TQ++A + + +L + +IER +GYR T++ ++ + ID+
Sbjct: 111 HFDLPSEVEVIDPTQYVATIADGGKLEMEFRIERGKGYR--TVERGREEATSLDFLQIDS 168
Query: 263 IFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
+FMPVR N+S+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 169 VFMPVRKVNYSVEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 222
[223][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 121 bits (304), Expect = 4e-26
Identities = 71/174 (40%), Positives = 110/174 (63%), Gaps = 5/174 (2%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + ++HE++T+ GI+E V +IL+N+KE+VL+S I+ + +GP VTA
Sbjct: 51 TAVTAVRITGVNHEFATMKGIREDVLDILLNMKELVLRSYTSDIQIGRLAVQGPKRVTAA 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAI 261
++ LP V +V +IA + E QL + QIER +GYR + +DG+ +IDAI
Sbjct: 111 DLELPTEVQVVHPRHYIATLAEDGQLEMEFQIERGKGYRA-IERGSEDGAAIDYLSIDAI 169
Query: 260 FMPVRNANHSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
FMPVR N ++ S + N +Q+ L LEIWT+GSL+P+EAL +A++ L+D P
Sbjct: 170 FMPVRKVNWTVESERSAANVEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRP 223
[224][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 121 bits (303), Expect = 5e-26
Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 6/173 (3%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T IT + ++HE++TI G++E V EI++NLKE VLKS+ Y + + +GP VT
Sbjct: 51 TAITAVRIAGVNHEFATIEGVREDVLEIMLNLKEAVLKSHTYQKQIGRLLVQGPATVTVG 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDA 264
+ LP V +V+ Q+IA ++ L + QIE+ GYR + +D S IDA
Sbjct: 111 HFDLPSEVEVVNKNQYIATLSPGATLEMECQIEKGTGYR--AVDRHRDDSAALDFLQIDA 168
Query: 263 IFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLF 108
IFMPVR N+++ +G +++ L LEIWT+GSLTP+EA+ +A+ L+DLF
Sbjct: 169 IFMPVRKVNYTVEDARDGGSLEKDRLTLEIWTSGSLTPQEAISQAAAILVDLF 221
[225][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 120 bits (302), Expect = 7e-26
Identities = 68/188 (36%), Positives = 109/188 (57%), Gaps = 6/188 (3%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
+T + ++HE++T+ G++E V E+++N+KEI+LKS + + GP V A
Sbjct: 53 VTALRIAGVNHEFATVQGVREDVMELMLNMKEIILKSYTNQTQIGRLVATGPATVVAAQF 112
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMP 252
LP V IVD Q++A + E +L + ++E+ +GYR + S + ID+IFMP
Sbjct: 113 DLPSEVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMP 172
Query: 251 VRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF--LHAEEE 81
V N+S+ + ++ L LEIWTNGS+ PKEAL +A+ L++LF P L+A E
Sbjct: 173 VTKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLKDLNALES 232
Query: 80 KLNFENNE 57
NF++ E
Sbjct: 233 SSNFDDQE 240
[226][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 120 bits (301), Expect = 9e-26
Identities = 68/179 (37%), Positives = 106/179 (59%), Gaps = 6/179 (3%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
+T + ++HE++TI G++E V E+++N+KEI LKS + + GP VTA
Sbjct: 53 VTALRIAGVNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAGQF 112
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIF 258
LP V IVD +Q++A + E +L + +IE+ +GYR ++ +D S ID++F
Sbjct: 113 DLPSEVEIVDPSQYVATLAEGSKLEMEFRIEKGKGYR--AIERGKDDSTSLDFLQIDSVF 170
Query: 257 MPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 84
MPV N+S+ V+G ++ L +EIWTNGS+ PKEAL EA+ ++DLF P E
Sbjct: 171 MPVTKVNYSVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[227][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 119 bits (299), Expect = 1e-25
Identities = 73/188 (38%), Positives = 109/188 (57%), Gaps = 6/188 (3%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
IT + +SHE+STI GI+E V EIL+NLKEIV L + +GP VTA++
Sbjct: 53 ITAVRIAGVSHEFSTINGIREDVLEILLNLKEIVFSGQLQESTIGRLTVQGPAIVTARSF 112
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI----NTLKNFQDGSYNIDAIFM 255
LPP + ++D Q+IA + L + +IE GY+I N+ ++F+ +D++FM
Sbjct: 113 ELPPEIKLIDPEQYIATICGNNTLEMEFKIEVGSGYKIVEKDNSTEHFE--FLQVDSVFM 170
Query: 254 PVRNANHSI-HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EE 81
PV+ N I + N E L L+IWTNGS++ KEA+ A+ NLI+LF P + E
Sbjct: 171 PVKKVNFRIEETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDGES 230
Query: 80 KLNFENNE 57
+ ++E NE
Sbjct: 231 ETDYETNE 238
[228][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 119 bits (298), Expect = 2e-25
Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 5/189 (2%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + ++HE++TI G++E EI++N+KEI+LKS + + + GPG VTA
Sbjct: 51 TAVTALRIGGVNHEFATIPGVREDALEIILNMKEIILKSYTHQPQIGRLTATGPGQVTAA 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAI 261
LP V +VD TQ+IA + + +L + +IE+ + YR +N + + IDA+
Sbjct: 111 QFDLPSEVEVVDPTQYIATLADGAKLEMEFRIEKGKSYRA-VQRNRDEATALDFLQIDAV 169
Query: 260 FMPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 84
FMPV N+S+ S + G+ ++ L LEIWTNGS+ P+EAL +A+ ++LF P
Sbjct: 170 FMPVTKVNYSVDSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNPLKDLTL 229
Query: 83 EKLNFENNE 57
E + E E
Sbjct: 230 EAIQDELQE 238
[229][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 119 bits (298), Expect = 2e-25
Identities = 71/173 (41%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
+T + ++HE++TI G++E V EI++N+KEIVLKS + + G VTA N
Sbjct: 55 VTAIRIAGVNHEFATIPGVREDVLEIMLNMKEIVLKSYSDQAQIGRLVATSAGTVTAANF 114
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFM 255
LP V +VD TQ++A +TE +L + +IE GY+ + DG+ IDA+FM
Sbjct: 115 ELPSEVEVVDPTQYVATLTEGSKLEMEFRIETGTGYK-GVERGKDDGTSLDFLEIDAVFM 173
Query: 254 PVRNANHSIHSYVNGN--EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
PV N+ + + G E Q+ L LEIWTNGS PKEAL EA+ ++DLF P
Sbjct: 174 PVTKVNYIVED-IRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[230][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 119 bits (297), Expect = 2e-25
Identities = 68/188 (36%), Positives = 108/188 (57%), Gaps = 6/188 (3%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
+T + ++HE++T+ G++E V E+++N+KEI LKS + + GP V A
Sbjct: 53 VTALRIAGVNHEFATVEGVREDVMELMLNMKEITLKSYTNQTQIGRLVATGPATVVAAQF 112
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMP 252
LP V IVD Q++A + E +L + ++E+ +GYR + S + ID+IFMP
Sbjct: 113 DLPSEVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMP 172
Query: 251 VRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF--LHAEEE 81
V N+S+ + ++ L LEIWTNGS+ PKEAL +A+ L++LF P L+A E
Sbjct: 173 VTKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLKDLNALES 232
Query: 80 KLNFENNE 57
NF++ E
Sbjct: 233 SGNFDDQE 240
[231][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 118 bits (296), Expect = 3e-25
Identities = 66/175 (37%), Positives = 108/175 (61%), Gaps = 6/175 (3%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + +SHE++T+ G++E V EILM +KE++LK+ + + GP +TA
Sbjct: 51 TAVTAVRIAGVSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVSGPTTITAA 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDA 264
+ LP V ++D TQ++A + E +L + +IE+ +GYR T++ ++ + ID+
Sbjct: 111 HFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIEKGKGYR--TVERGREEATSLDFLQIDS 168
Query: 263 IFMPVRNANHSI-HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
IFMPVR N+S+ S G ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 169 IFMPVRKVNYSVEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[232][TOP]
>UniRef100_B4WHD8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7335 RepID=B4WHD8_9SYNE
Length = 315
Score = 118 bits (296), Expect = 3e-25
Identities = 66/173 (38%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + SHE+STI G++E V +IL+N+KE VLKS + + +GP VTA
Sbjct: 51 TAVTSVRIAGASHEFSTIPGVREDVLDILLNMKETVLKSYSAQPQIGRLVVQGPAKVTAA 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS---YNIDAIF 258
N LP V ++ ++IA+V +L + +IER +GY+ + G IDA+F
Sbjct: 111 NFDLPSEVELISTDRYIASVAAGHKLEMEFRIERGKGYKAIDRSREETGGVEFMQIDAVF 170
Query: 257 MPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
MPVR N+S+ ++++ ++ L +EIWTNGSLT ++A+ EA+ L+D+F P
Sbjct: 171 MPVRKVNYSVENFIDPEGFPKDRLVMEIWTNGSLTAQQAMSEAAALLVDMFNP 223
[233][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 118 bits (296), Expect = 3e-25
Identities = 65/177 (36%), Positives = 106/177 (59%), Gaps = 4/177 (2%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
+T + ++HE++TI+G++E V EI++N+KE+VLKS + + GPG VTA
Sbjct: 53 VTAIRIAGVNHEFATILGVREDVLEIMLNMKELVLKSYTDQPQIGRLTAIGPGTVTAAQF 112
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMP 252
+P V ++D Q+IA + E +L + ++ER GYR+ ++ S + ID++FMP
Sbjct: 113 EVPSEVEVIDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMP 172
Query: 251 VRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 84
V N+++ +G ++ L L+IWTNGS+ P+EAL EAS + +LFIP E
Sbjct: 173 VTKVNYTVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229
[234][TOP]
>UniRef100_Q6B8X4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gracilaria
tenuistipitata var. liui RepID=RPOA_GRATL
Length = 314
Score = 117 bits (294), Expect = 6e-25
Identities = 69/188 (36%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
I + I+HE+STI G++E V EIL+NLK++VLKS+ + I +GP +T
Sbjct: 53 IVAVRIAGINHEFSTITGVREDVLEILLNLKKVVLKSHSDTPQIGRIRLQGPAIITTGLF 112
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMP 252
+PP ++I+D Q+IA + + +IE+ GY++ K F S + IDA+FMP
Sbjct: 113 EVPPEILIIDPQQYIATICNNTIFEMEFRIEKGSGYKL-VNKGFDKKSIDFLQIDAVFMP 171
Query: 251 VRNANHSI-HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 75
V N+++ ++ QE LFLE+WTNGSL+P+EA+ E ++ L LF P + +
Sbjct: 172 VTKFNYTVEEKKISPILIQEKLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLTNLNFQNA 231
Query: 74 NFENNEHK 51
N +NE++
Sbjct: 232 NNTDNEYE 239
[235][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 117 bits (293), Expect = 7e-25
Identities = 68/199 (34%), Positives = 116/199 (58%), Gaps = 8/199 (4%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + ++HE++TI G++E V +IL+N+K++VL+S+ + + +GP VT
Sbjct: 51 TAVTAVRIAGVNHEFATIPGVREDVLDILLNMKQVVLRSHTNDPQIGRLFVQGPATVTTD 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAI 261
+ LP V IV+ TQ++A ++ L + +IE+ +GY KN + + IDAI
Sbjct: 111 DFELPTEVEIVNPTQYVATLSSDATLEMEFRIEQGKGYHA-VGKNRDEAAALDFLEIDAI 169
Query: 260 FMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE- 87
+MPVR N+ + + V G +++ L L+IWTNG+LTP+E+L +A+ L+DLF P A
Sbjct: 170 YMPVRRVNYEVEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDATF 229
Query: 86 --EEKLNFENNEHKVTLPL 36
E + E + +P+
Sbjct: 230 NVVEDIELEEEDETNQIPI 248
[236][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 117 bits (292), Expect = 9e-25
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 6/179 (3%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
+T + ++HE++TI G++E V E+++N+KEI LKS + + GP VTA
Sbjct: 53 VTALRIAGVNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAAQF 112
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIF 258
+P + +VD +Q++A +++ +L + ++E+ +GYR ++ +D + ID++F
Sbjct: 113 DVPSEIEVVDPSQYVATLSDGSKLEMEFRVEKGKGYR--AIERGKDDTTSLDFLQIDSVF 170
Query: 257 MPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 84
MPV N+S+ V+G ++ L LEIWTNGS+ PKEAL EA+ ++DLF P E
Sbjct: 171 MPVTKVNYSVEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNE 229
[237][TOP]
>UniRef100_Q6J223 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cylindrotheca
fusiformis RepID=Q6J223_CYLFU
Length = 291
Score = 116 bits (290), Expect = 2e-24
Identities = 76/190 (40%), Positives = 109/190 (57%), Gaps = 4/190 (2%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
I+ A+ +SHE+STI G++E + EIL+NLK IVLKS + + +GP VTA I
Sbjct: 45 ISAARIAGVSHEFSTIPGVREDILEILLNLKGIVLKSKTQTAQFGRLKIQGPTVVTADLI 104
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMP 252
LP + IV+ ++ ++ L I + E GY++ T + F D S N +D IFMP
Sbjct: 105 QLPSDLEIVNPNHYLMTISTSNVLEIEFKFEYGTGYKL-TSQAFLDESDNYLQLDTIFMP 163
Query: 251 VRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 75
V+ N I + Y N N E +FL+IWTNGS++P EAL A++ IDLF L +E K
Sbjct: 164 VQKVNFKIENVYDNNNNITEQVFLDIWTNGSISPNEALKSAAQITIDLFELLLKNKETK- 222
Query: 74 NFENNEHKVT 45
E N+ + T
Sbjct: 223 --EKNKLEAT 230
[238][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 115 bits (289), Expect = 2e-24
Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 6/199 (3%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T I+ + I HE++TI G++E + EIL+NLK IV+KS+ I+ + +GP +TA
Sbjct: 51 TAISAVRIVGIRHEFATIPGVREDILEILLNLKGIVIKSDTTEIKFGRLKVQGPLVLTAD 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIF 258
+I LP + IV+ +IA ++ I L + +IE GY++ + + F D + N ID+IF
Sbjct: 111 SIDLPSGIKIVNPNHYIATISTSINLELEFKIEHGIGYKLAS-QLFNDENKNFLQIDSIF 169
Query: 257 MPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-- 87
MPV+ N I + Y N E L LEIWTNGS+ P EAL +A + +I+ F L +
Sbjct: 170 MPVQKVNFKIENLYDADNSISERLILEIWTNGSIEPIEALKKACKIIINCFNSLLKTQNT 229
Query: 86 EEKLNFENNEHKVTLPLFT 30
+E +N K+T+ +T
Sbjct: 230 KETTKKTSNNRKLTIEPYT 248
[239][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 115 bits (289), Expect = 2e-24
Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
I + I+HE+ST+ G++E V EIL+NLK IVLK N+ + + +GP VT+ I
Sbjct: 57 IVSVRIAGINHEFSTVKGVKEDVLEILLNLKNIVLKGNVLKNQIGRLKVQGPAIVTSGQI 116
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFM 255
P + +VD Q+IA ++ L + L++E+ GY++ ++ F S ID+IFM
Sbjct: 117 EFPLDITVVDPCQYIATISGNDYLEMELKVEKSSGYKL--VETFSKKSPLDFLPIDSIFM 174
Query: 254 PVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
PV+ N+ + ++ E L LE+WTNGSL+P++++ AS NL+ LF P
Sbjct: 175 PVKKVNYYVEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[240][TOP]
>UniRef100_UPI0001985CC2 PREDICTED: similar to Os04g0237300, partial n=1 Tax=Vitis vinifera
RepID=UPI0001985CC2
Length = 274
Score = 115 bits (288), Expect = 3e-24
Identities = 58/70 (82%), Positives = 61/70 (87%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
TCITRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ
Sbjct: 205 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQ 264
Query: 428 NIILPPSVVI 399
+II PPSV I
Sbjct: 265 DIISPPSVEI 274
[241][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 115 bits (288), Expect = 3e-24
Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 3/170 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T IT + + E+S I GI+E + EIL+NLK +V+KS I + KGP VTA
Sbjct: 53 TTITAVRIAGVQDEFSIIPGIREDILEILLNLKGVVVKSATPDISFGRLKIKGPAVVTAD 112
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFM 255
+I LPP++ I++ +IA ++ L I + ER GY++ T + + IDAIFM
Sbjct: 113 SIQLPPNIEIINPNHYIATISTSNVLEIEFKFERGTGYKLAGQTFCDKSEDFLQIDAIFM 172
Query: 254 PVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 108
P++ + I + Y N N E LFL+IWTNGS++P +A+ AS+ +I+ F
Sbjct: 173 PIQKVDFKIENVYDNSNSITERLFLDIWTNGSISPDDAISYASKFIIEFF 222
[242][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 114 bits (285), Expect = 6e-24
Identities = 62/175 (35%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + +SHE++T+ G++E V EILM +KE++L+S + + GP VT
Sbjct: 51 TAVTAVRIAGVSHEFATVPGVREDVLEILMKMKEVILRSYSSQPQIGRLLVNGPATVTVA 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDA 264
+ LP V ++D TQ++A + E +L + +IE+ +GYR T++ ++ + ID+
Sbjct: 111 HFDLPSEVEVIDQTQYVATLAEGGKLEMEFRIEKGKGYR--TVERGREEATSLDFLQIDS 168
Query: 263 IFMPVRNANHSI-HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
+FMPVR N+S+ + + ++ L LE+WTNGS++P+EAL A+ L++LF P
Sbjct: 169 VFMPVRKVNYSVEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNP 223
[243][TOP]
>UniRef100_A6MW22 DNA-directed RNA polymerase subunit alpha n=1 Tax=Rhodomonas salina
RepID=RPOA_RHDSA
Length = 314
Score = 114 bits (285), Expect = 6e-24
Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 3/187 (1%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T I + +SHE+STI GI+E V EIL+NLKE+VLKS + +GP VT
Sbjct: 51 TAIVAVRIAGVSHEFSTIPGIREDVLEILLNLKEVVLKSQTKNPSVGRLRVQGPAIVTTS 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFM 255
N+ LP V ++D Q+IA + L + +IE +GY + ++ +DAIFM
Sbjct: 111 NLELPSEVELIDPNQYIATICGNNILEMEFRIETGKGYHLIERSIDETSIDFLQVDAIFM 170
Query: 254 PVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 78
PV+ N+ N N QE L LE+WTNGS+ P++A+ + + L +L P ++
Sbjct: 171 PVKKVNYLTKDIRSNDNLLQEQLLLEVWTNGSIDPQDAVSQGGKILTELLHPL-----KE 225
Query: 77 LNFENNE 57
+NF+++E
Sbjct: 226 INFKSDE 232
[244][TOP]
>UniRef100_Q110D1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Trichodesmium
erythraeum IMS101 RepID=RPOA_TRIEI
Length = 314
Score = 113 bits (283), Expect = 1e-23
Identities = 67/178 (37%), Positives = 106/178 (59%), Gaps = 9/178 (5%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T IT + ++HE++TI G++E V EIL+N+KE+VLKS + + +GP VTA
Sbjct: 51 TAITSVRIAGVNHEFATIKGVREDVLEILLNMKEVVLKSYSEQPQIGRLRVEGPATVTAD 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYR--------INTLKNFQDGSYN 273
+P V ++D +Q+IA ++ L + +IE+ GY+ + TL Q
Sbjct: 111 RFDVPSEVEVIDRSQYIATLSPGSILEMEFRIEKGTGYKAVDRTRDDVATLDFLQ----- 165
Query: 272 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
IDAIFMPVR N++I +++ + +Q+ L ++IWTNGS TP++AL A+ L+ LF P
Sbjct: 166 IDAIFMPVRKVNYTIEDAHIGSSLEQDRLIMDIWTNGSYTPQDALSNAAGILMSLFEP 223
[245][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 113 bits (282), Expect = 1e-23
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + ++HE++TI G++E V EI++N+KEIVLKS + + G +VTA
Sbjct: 51 TAVTAIRIGGVNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAG 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAI 261
LP V +++ TQ IA +TE +L + +IE+ GY + ++ + + IDA+
Sbjct: 111 QFDLPSEVEVINPTQPIATLTEGAKLEMEFRIEKGVGY-VPVERSSDEPTALDFLQIDAV 169
Query: 260 FMPVRNANHSIHSYVNG--NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
FMPV N+S+ S + G E ++ L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 170 FMPVTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[246][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 113 bits (282), Expect = 1e-23
Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 5/135 (3%)
Frame = -2
Query: 518 NLKEIVLKSNLYG-IRDASICFKGPGYVTAQNIILPPSVVIVDNTQH----IANVTEPIQ 354
N K + + S+ G + D + K GY + L + ++ N + IA + +PI
Sbjct: 14 NNKMLFVTSSFVGWLIDHILFMKWSGYDKILLLDLMYLLDLISNNNYSTILIARLKKPID 73
Query: 353 LCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIW 174
LCIGLQI+R+ Y + NFQDGSY ID +FM V+NANH+IH Y N NE+QEILFL++W
Sbjct: 74 LCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNANHNIHFYGNVNERQEILFLKLW 133
Query: 173 TNGSLTPKEALYEAS 129
TN +LTPKEA +EAS
Sbjct: 134 TNKNLTPKEAFHEAS 148
[247][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 113 bits (282), Expect = 1e-23
Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
IT K ++E+S + GI+E V EIL+NLKEIV ++ ++ + +GP V A N+
Sbjct: 58 ITSVKIPGANNEFSILPGIRESVLEILLNLKEIVFRTKSLDVQKGYLSIQGPCVVKAANL 117
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTL---KNFQDGSYNIDAIFMP 252
LP S+ +VD Q+IA ++ L + I +GY++ KN S +DAIFMP
Sbjct: 118 QLPTSIEVVDGGQYIATLSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDAIFMP 177
Query: 251 VRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 72
+ N+ + E + LEIWTNGS++P++AL + +IDLF P H E
Sbjct: 178 IHKVNYMVEQDHTSKFLTERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSSEYST 237
Query: 71 FENN 60
+N+
Sbjct: 238 NKND 241
[248][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 112 bits (281), Expect = 2e-23
Identities = 66/198 (33%), Positives = 113/198 (57%), Gaps = 9/198 (4%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + ++HE++TI G++E +IL+ +KE+VL+S + + +GP VTA
Sbjct: 50 TAVTAVRIAGVNHEFATIPGVREDALDILLRMKELVLRSYSPDPQIGRLFIQGPATVTAI 109
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIF 258
N + P V +++ +IA ++ L + +IE+ +GYR + S + IDAIF
Sbjct: 110 NFEVSPDVEVINLDHYIATLSADATLEMEFKIEQGKGYRAIERGKDESASLDFLQIDAIF 169
Query: 257 MPVRNANHSIHSYVNGN-EKQEILFLEIWTNGSLTPKEALYEASRNLIDLF-----IPFL 96
MPVR N+++ +G +++ L LEIWTNGSLTP+EAL + + L+DLF +PF
Sbjct: 170 MPVRKVNYTVEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLKDVPFR 229
Query: 95 HAEEEKLNFENNEHKVTL 42
+E E+ +++ +
Sbjct: 230 SSEPSHSTEEDETNQIPI 247
[249][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 112 bits (281), Expect = 2e-23
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Frame = -2
Query: 608 TCITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 429
T +T + ++HE++TI G++E V EI++N+KEIVLKS + + G +VTA
Sbjct: 51 TAVTAIRIGGVNHEFATIPGVREDVLEIMLNMKEIVLKSYTDQPQIGRLVATGAAHVTAG 110
Query: 428 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAI 261
LP V +++ TQ IA +TE +L + +IE+ GY + ++ + + IDA+
Sbjct: 111 QFDLPSEVEVINPTQPIATLTEGAKLEMEFRIEKGVGY-VPVERSSDEPTALDFLQIDAV 169
Query: 260 FMPVRNANHSIHSYVNG--NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
FMPV N+S+ S + G E ++ L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 170 FMPVTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[250][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 112 bits (281), Expect = 2e-23
Identities = 69/173 (39%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Frame = -2
Query: 602 ITRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 423
+T + ++HE++TI G++E V EI++N+KEIVLKS + + G +VTA
Sbjct: 53 VTAIRIGGVNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQF 112
Query: 422 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFM 255
LP V +V+ TQ IA +TE +L + +IE+ GY + ++ ++ + IDA+FM
Sbjct: 113 ELPSEVEVVNPTQPIATLTEGAKLEMEFRIEKGVGY-VPVERSSEEPAALDFLQIDAVFM 171
Query: 254 PVRNANHSIHSYVNG--NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 102
PV N+S+ S + G E ++ L LEIWTNGS PKEAL +A+ L+DLF P
Sbjct: 172 PVTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223