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[1][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 397 bits (1020), Expect = e-109
Identities = 196/197 (99%), Positives = 196/197 (99%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII
Sbjct: 63 TRAKSEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA
Sbjct: 123 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN
Sbjct: 183 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
EHKVTLPLFTCHDLLAK
Sbjct: 243 EHKVTLPLFTCHDLLAK 259
[2][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 356 bits (913), Expect = 9e-97
Identities = 176/197 (89%), Positives = 181/197 (91%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE +HEILMNLKEIVLKSNLYG RDASICFKGPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIAN+TEPI LCI LQIER RGYRI TL N QDGSY IDA+FMPVRNA
Sbjct: 123 LPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE LNFENN
Sbjct: 183 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HKVTLPLFT HD L K
Sbjct: 243 QHKVTLPLFTFHDRLLK 259
[3][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 352 bits (902), Expect = 2e-95
Identities = 171/197 (86%), Positives = 181/197 (91%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EKI HEYSTI+GI+E VHEILMNLKEIVL+SNLYG RDASICFKGPGYVTAQ+II
Sbjct: 63 TRVKLEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY IDA FMPVRN
Sbjct: 123 LPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N ENN
Sbjct: 183 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HKVTLPLFT HD+LAK
Sbjct: 243 QHKVTLPLFTFHDILAK 259
[4][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 351 bits (900), Expect = 3e-95
Identities = 171/197 (86%), Positives = 181/197 (91%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EKI HEYSTI+GI+E VHEILMNLKEIVL+SNLYG RDASICFKGPGYVTAQ+II
Sbjct: 63 TRVKSEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY IDA FMPVRN
Sbjct: 123 LPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N ENN
Sbjct: 183 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HKVTLPLFT HD+LAK
Sbjct: 243 QHKVTLPLFTFHDILAK 259
[5][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 340 bits (873), Expect = 4e-92
Identities = 167/193 (86%), Positives = 178/193 (92%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE +HEILMNLKEIVL+SNLYG R+ASICFKGPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTREASICFKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LP SV ++DNTQHIAN+TEPI LCI LQIER RGYRI TL N QDGSY IDA+FMPVRNA
Sbjct: 123 LP-SVEVIDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNA 181
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSYVNGN+KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE LNFENN
Sbjct: 182 NHSIHSYVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENN 241
Query: 51 EHKVTLPLFTCHD 13
+HK+TLPLFT HD
Sbjct: 242 QHKMTLPLFTFHD 254
[6][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 337 bits (863), Expect = 6e-91
Identities = 168/197 (85%), Positives = 179/197 (90%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKFEKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R+ASIC KGPG VTAQ+II
Sbjct: 63 TRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LP SV IVDNTQ+IAN+TEPI LCIGLQIER+RGY I T KNFQDGSY IDA+FMPVRNA
Sbjct: 123 LPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLENN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
++KVTLP FT HD LAK
Sbjct: 243 QYKVTLPFFTFHDRLAK 259
[7][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 335 bits (860), Expect = 1e-90
Identities = 165/197 (83%), Positives = 177/197 (89%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE +HEILMNLKEIVL+SNLYG RDASICFKGPG VTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGSVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIAN+TEPI LC+ L++ER+RGYRI TL N QD SY IDA+FMPVRNA
Sbjct: 123 LPPSVEIVDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+KLN ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNLENN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+ KVTLPLFT HD K
Sbjct: 243 QQKVTLPLFTFHDRFVK 259
[8][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 333 bits (853), Expect = 8e-90
Identities = 162/197 (82%), Positives = 176/197 (89%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EKI HEYSTI+GI+E VHEI MNLKEIVLKSN+YG +DASI FKGPGY+TAQ+II
Sbjct: 63 TRVKSEKIPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGTQDASISFKGPGYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDN QHIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY+IDA FMPVRN
Sbjct: 123 LPPSVEIVDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS+NLIDLFIPFLHAEEE N E
Sbjct: 183 NYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNLEKK 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HKVTLPLFT HD+L K
Sbjct: 243 KHKVTLPLFTFHDILVK 259
[9][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 330 bits (845), Expect = 7e-89
Identities = 160/197 (81%), Positives = 177/197 (89%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T K EKI HEYSTI+GI+E VHEI MNLKEIVLKSN+YGI+DASI FKGPGY+TAQ+II
Sbjct: 63 TCVKSEKIPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGIQDASISFKGPGYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDN QHIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY+IDA FMPVRN
Sbjct: 123 LPPSVEIVDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS+NLI+LFIPFLHAEE+ + E N
Sbjct: 183 NYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHLEKN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HKVTLPLFT HD+L K
Sbjct: 243 QHKVTLPLFTFHDILVK 259
[10][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 326 bits (835), Expect = 1e-87
Identities = 163/197 (82%), Positives = 174/197 (88%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG RDA IC KGPGYVTAQ+I+
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAFICVKGPGYVTAQDIV 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIA++TEPI L IGLQIER+RGY I T NFQDGSY IDA+FMPV+NA
Sbjct: 123 LPPSVEIVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLHAEEEK ENN
Sbjct: 183 NHSIHSYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLENN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HKVTLP F HD LAK
Sbjct: 243 QHKVTLPFFPFHDRLAK 259
[11][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 326 bits (835), Expect = 1e-87
Identities = 165/197 (83%), Positives = 174/197 (88%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIAN+TEPI LCI LQIER+RGYRI T NFQ+GSY IDA+FMPVRNA
Sbjct: 123 LPPSVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSYVNGNE QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPF HAEE + ENN
Sbjct: 183 NHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HLENN 239
Query: 51 EHKVTLPLFTCHDLLAK 1
+HK TLPLF H LAK
Sbjct: 240 QHKGTLPLFNFHGRLAK 256
[12][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 325 bits (834), Expect = 1e-87
Identities = 166/199 (83%), Positives = 176/199 (88%), Gaps = 2/199 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG RDASIC KGPG VTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIAN+ EPI LCI L+IER+RGY I T NFQD SY +DAIFMPVRN
Sbjct: 123 LPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF--E 58
NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEEK NF +
Sbjct: 183 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLK 242
Query: 57 NNEHKVTLPLFTCHDLLAK 1
NN+ KVTLPLFT H+ LAK
Sbjct: 243 NNKKKVTLPLFTFHEKLAK 261
[13][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 324 bits (831), Expect = 3e-87
Identities = 161/199 (80%), Positives = 175/199 (87%), Gaps = 2/199 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE +HEILMNLK+IVL+SNLYG RDASICFKGPGYVTA++II
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESIHEILMNLKQIVLRSNLYGTRDASICFKGPGYVTARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDA--IFMPVR 238
LPPSV IVDNTQHIAN+TEPI LCI LQIER RGYR T+ N QDGSY ID +FMPV
Sbjct: 123 LPPSVEIVDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFMPVI 182
Query: 237 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 58
+AN+SIHSY+N NEKQEILFLEIWTNGSLTPKEALYEA+RNLIDLFIPFLHAEEE +FE
Sbjct: 183 HANYSIHSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENFHFE 242
Query: 57 NNEHKVTLPLFTCHDLLAK 1
NN+HKVTLPLF HD L K
Sbjct: 243 NNQHKVTLPLFAFHDRLVK 261
[14][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 323 bits (828), Expect = 6e-87
Identities = 160/197 (81%), Positives = 171/197 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+ NLYG R+A IC KGPGYVTAQ+II
Sbjct: 65 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDII 124
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQH+A++TEPI LCIGLQIER+RGY I T KNF DGSY IDA+FMPVRNA
Sbjct: 125 LPPSVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNA 184
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIH Y N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ ENN
Sbjct: 185 NHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLENN 244
Query: 51 EHKVTLPLFTCHDLLAK 1
+H VTLP F HD L K
Sbjct: 245 QHDVTLPFFPFHDRLVK 261
[15][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 320 bits (821), Expect = 4e-86
Identities = 159/197 (80%), Positives = 170/197 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYS I GIQE VHEILMNLKEIVL+SNLYG R+A IC KGPGYVTAQ+II
Sbjct: 65 TRAKSEKIPHEYSIIAGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQDII 124
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIA++TEPI LCIGLQIER+RGY I T NF DGSY ID +FMPVRN
Sbjct: 125 LPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPVRNV 184
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + EN+
Sbjct: 185 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHLENS 244
Query: 51 EHKVTLPLFTCHDLLAK 1
+HKVTLP F HD L K
Sbjct: 245 QHKVTLPFFPFHDKLTK 261
[16][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 319 bits (817), Expect = 1e-85
Identities = 158/197 (80%), Positives = 171/197 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HE+STI GIQE +HEILMNLK +VLKSNLYG DASI KGPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V I+DNTQHIA++TE I LCIGLQIER+RGYRI NFQDGSY IDA+FMPVRNA
Sbjct: 123 LPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E N
Sbjct: 183 NHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEIN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HKVTLPLFT H L K
Sbjct: 243 QHKVTLPLFTFHGRLTK 259
[17][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 319 bits (817), Expect = 1e-85
Identities = 157/197 (79%), Positives = 173/197 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGI+E VHEILMNLKEIVL+SNLYG R+ASIC +GPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRNASICIRGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV VDNTQHIAN+TEPI CI L+IER+RGYR+ T N QDGSY IDA+FMPVRNA
Sbjct: 123 SPPSVETVDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHA+EE + E+N
Sbjct: 183 NHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLEDN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
++ VTLP FT HD LAK
Sbjct: 243 QNGVTLPFFTFHDRLAK 259
[18][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 318 bits (816), Expect = 2e-85
Identities = 158/197 (80%), Positives = 173/197 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKFEKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ+I+
Sbjct: 63 TRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDIL 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA++ EPI LCIGLQIER+RGY I + NFQDGSY IDA+FMPVRNA
Sbjct: 123 LPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE L+ NN
Sbjct: 183 NHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGNN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
++ VT PLFT H LAK
Sbjct: 243 KYNVTFPLFTFHKKLAK 259
[19][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 318 bits (815), Expect = 2e-85
Identities = 160/197 (81%), Positives = 170/197 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ+II
Sbjct: 57 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDII 116
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVDNTQHIA + EPI LCIGLQIER+RGY I NFQDGSY IDA+FMPVRNA
Sbjct: 117 SPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNA 176
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNE+QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E N
Sbjct: 177 NHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYN 236
Query: 51 EHKVTLPLFTCHDLLAK 1
+HK TLP T HD LAK
Sbjct: 237 QHKSTLPPLTFHDRLAK 253
[20][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 318 bits (815), Expect = 2e-85
Identities = 160/197 (81%), Positives = 170/197 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVDNTQHIA + EPI LCIGLQIER+RGY I NFQDGSY IDA+FMPVRNA
Sbjct: 123 SPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNE+QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E N
Sbjct: 183 NHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HK TLP T HD LAK
Sbjct: 243 QHKSTLPPLTFHDRLAK 259
[21][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 317 bits (813), Expect = 3e-85
Identities = 155/197 (78%), Positives = 173/197 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK +KI HE+STI GIQE +HEILMNLKEIVL+SNLYG DASIC KGPG VTAQ+II
Sbjct: 63 TRAKSKKIPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHDASICVKGPGCVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA++ EPI L IGL+IER+RGY + KNFQDGSY+IDA+FMPVRNA
Sbjct: 123 LPPSVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E N
Sbjct: 183 NHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLEKN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HK+TLPLF HD LAK
Sbjct: 243 QHKITLPLFAFHDRLAK 259
[22][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 317 bits (812), Expect = 5e-85
Identities = 155/197 (78%), Positives = 171/197 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR KFEK+ HEYSTI GIQE VHEI+MNLKEIVL+SNLYG +AS+C KGPGYVTAQ+II
Sbjct: 63 TRVKFEKVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTSEASVCVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA++TEPI CIGLQIER+RGY I T +NFQDGSY IDA+FMPVRNA
Sbjct: 123 LPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L ++N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+H V L FT HD LAK
Sbjct: 243 QHTVPLSPFTFHDKLAK 259
[23][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 316 bits (810), Expect = 8e-85
Identities = 157/197 (79%), Positives = 172/197 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKFEKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ+I+
Sbjct: 63 TRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDIL 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA++ EPI LCIGLQIER+RGY I + NFQDGSY IDA+FMPVRNA
Sbjct: 123 LPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE L+ N
Sbjct: 183 NHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGKN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
++ VT PLFT H LAK
Sbjct: 243 KYNVTFPLFTFHKKLAK 259
[24][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 315 bits (808), Expect = 1e-84
Identities = 154/197 (78%), Positives = 173/197 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK +KI HE+STI GIQE +HEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ+II
Sbjct: 63 TRAKSKKIPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHNASICVKGPGCVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA++ EPI L IGL+IER+RGY + KNFQDGSY+IDA+FMPVRNA
Sbjct: 123 LPPSVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E N
Sbjct: 183 NHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHLEKN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HK+TLPLF HD LAK
Sbjct: 243 QHKITLPLFAFHDRLAK 259
[25][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 314 bits (804), Expect = 4e-84
Identities = 158/201 (78%), Positives = 173/201 (86%), Gaps = 4/201 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HE+STI GIQE +HEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF--QDGSYNIDAIFMPVR 238
LPP V I+DNTQHIA++T+ I LCIGLQIER+RGYRI NF QDGSY+IDA+FMPVR
Sbjct: 123 LPPFVEIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMPVR 182
Query: 237 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-- 64
NANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID FIPFLHAEEE L+
Sbjct: 183 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLHLE 242
Query: 63 FENNEHKVTLPLFTCHDLLAK 1
E N+HKVTLPLF HD L K
Sbjct: 243 IEKNQHKVTLPLFCFHDKLTK 263
[26][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 314 bits (804), Expect = 4e-84
Identities = 155/197 (78%), Positives = 169/197 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK+ HEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ+II
Sbjct: 63 TRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNA
Sbjct: 123 LPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILF+EIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ L ++N
Sbjct: 183 NHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+H V L FT HD LAK
Sbjct: 243 QHTVPLSPFTFHDKLAK 259
[27][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 312 bits (800), Expect = 1e-83
Identities = 157/197 (79%), Positives = 171/197 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGI+E VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIA++TEPI LCI LQIER+RGYR+ T N Q+ SY IDA+FMPVRNA
Sbjct: 123 SPPSVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWT+GSLTPKEALYEASRNLIDLFIPFLHAEE+ E+N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLEDN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+ +VTLP FT HD L K
Sbjct: 243 QSRVTLPFFTFHDGLDK 259
[28][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 312 bits (800), Expect = 1e-83
Identities = 154/197 (78%), Positives = 169/197 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK+ HEYSTI GIQE VHEILMNLKEIVL+SNLYG +ASIC KGPGYVTAQ+II
Sbjct: 63 TRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNA
Sbjct: 123 LPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILF+EIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ L ++N
Sbjct: 183 NHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+H V L FT HD LAK
Sbjct: 243 QHTVPLSPFTFHDKLAK 259
[29][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 312 bits (799), Expect = 1e-83
Identities = 155/197 (78%), Positives = 168/197 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK+ HEYSTI GIQE VHEILMNLKEI+L+SNLYG DASIC KGPG VTAQ+II
Sbjct: 63 TRVKSEKVPHEYSTITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNA
Sbjct: 123 LPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L ++N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+H V L FT HD LAK
Sbjct: 243 QHTVPLSPFTFHDKLAK 259
[30][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 311 bits (798), Expect = 2e-83
Identities = 155/197 (78%), Positives = 169/197 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK+ HEYSTI+GIQE VHEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ+II
Sbjct: 63 TRVKSEKVPHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA++TE I CIGLQI+R+RGY I T NFQDGSY IDA+FMPVRNA
Sbjct: 123 LPPYVEIVDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L ++N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+H V L FT HD LAK
Sbjct: 243 QHTVPLSPFTFHDKLAK 259
[31][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 311 bits (798), Expect = 2e-83
Identities = 156/198 (78%), Positives = 172/198 (86%), Gaps = 1/198 (0%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYST+VGIQE VH+ILMNLKEIVL+SNLYG DASIC +GPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT-LKNFQDGSYNIDAIFMPVRN 235
LPP V +VDNTQHIA++TEPI+LCIGLQIER+RGY I T N +DGSY IDA+FMPVRN
Sbjct: 123 LPPYVEVVDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRN 182
Query: 234 ANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 55
ANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ N
Sbjct: 183 ANHSIHSYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLAN 242
Query: 54 NEHKVTLPLFTCHDLLAK 1
N+H V LP FT HD L K
Sbjct: 243 NQHMVPLPPFTFHDKLDK 260
[32][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 311 bits (797), Expect = 2e-83
Identities = 156/198 (78%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYST+VGIQE VHEILMNLKEI+LKSNLYG DASIC +GPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTLVGIQESVHEILMNLKEIILKSNLYGTCDASICIRGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN-FQDGSYNIDAIFMPVRN 235
PP V IVDNTQHIA++ EPI LCIGLQIER+RGY I T N FQDGSY IDA+FMPVRN
Sbjct: 123 SPPYVEIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRN 182
Query: 234 ANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 55
ANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLIDLFIPFLH EEE L+ +
Sbjct: 183 ANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLHLAD 242
Query: 54 NEHKVTLPLFTCHDLLAK 1
N+H V LP FT H+ L K
Sbjct: 243 NQHTVPLPPFTFHEKLTK 260
[33][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 311 bits (797), Expect = 2e-83
Identities = 153/196 (78%), Positives = 173/196 (88%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF+K++HEYSTIVGI+E VHEILMNLKEIVL+SNLYG DASIC +GP VTAQ+II
Sbjct: 63 TRAKFDKVTHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTLDASICVRGPRSVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIAN+TEPI LCIGLQIERDRGYR+ T N+QDGSY ID +FMPVRNA
Sbjct: 123 SPPSVEIVDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NG EKQEILFLEIWTNGSLTPKEALYEASRNLI+LFIPFLHAEE+++ E++
Sbjct: 183 NHSIHSYGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILLEDS 242
Query: 51 EHKVTLPLFTCHDLLA 4
E+ T+PLFT H+ LA
Sbjct: 243 ENISTVPLFTFHNELA 258
[34][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 311 bits (796), Expect = 3e-83
Identities = 153/196 (78%), Positives = 171/196 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EK+ HEYSTI GI+E VHEILMNLKEIVL+SNLYG RDASIC +GP VTAQ+II
Sbjct: 63 TRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV +VD TQHIA++TEPI LCIGLQI+RDRGYR+ T KN QDGSY IDA+ MPVRNA
Sbjct: 123 SPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +NFE N
Sbjct: 183 NHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEEN 242
Query: 51 EHKVTLPLFTCHDLLA 4
+++ T+P FT D LA
Sbjct: 243 QNRFTVPPFTFPDRLA 258
[35][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 311 bits (796), Expect = 3e-83
Identities = 153/196 (78%), Positives = 171/196 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EK+ HEYSTI GI+E VHEILMNLKEIVL+SNLYG RDASIC +GP VTAQ+II
Sbjct: 63 TRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV +VD TQHIA++TEPI LCIGLQI+RDRGYR+ T KN QDGSY IDA+ MPVRNA
Sbjct: 123 SPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +NFE N
Sbjct: 183 NHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEEN 242
Query: 51 EHKVTLPLFTCHDLLA 4
+++ T+P FT D LA
Sbjct: 243 QNRFTVPPFTFPDRLA 258
[36][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 310 bits (795), Expect = 4e-83
Identities = 151/195 (77%), Positives = 169/195 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRA EK+ HEYSTI+GI+E VHEIL+NLKEIVL+SN+YG+RDASIC +GP YVTAQ+II
Sbjct: 63 TRANSEKVPHEYSTIIGIEESVHEILLNLKEIVLRSNIYGVRDASICARGPKYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIAN+TEPI LCIGLQI RDRGYR N Q+GSY IDA+ MPVRNA
Sbjct: 123 SPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NF+ N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFKEN 242
Query: 51 EHKVTLPLFTCHDLL 7
+++ TLP+FT D L
Sbjct: 243 KNRFTLPIFTFQDRL 257
[37][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 310 bits (795), Expect = 4e-83
Identities = 158/198 (79%), Positives = 171/198 (86%), Gaps = 1/198 (0%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE VHEILMNLK+IVL+SNLYG DA IC KGPGYVTAQ+I+
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDIL 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-YNIDAIFMPVRN 235
LPPSV IVDNTQHIA++TEPI L IGLQIER RGY I T FQDG+ Y IDA+FMPVRN
Sbjct: 123 LPPSVEIVDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMPVRN 182
Query: 234 ANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 55
ANHSI SY NGNEKQEILFLEIWTNGSLTPKEAL+EASR+LIDLFIPFL AE+E L EN
Sbjct: 183 ANHSIQSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLPLEN 242
Query: 54 NEHKVTLPLFTCHDLLAK 1
N++KVTLP FT HD LAK
Sbjct: 243 NQYKVTLPFFTFHDRLAK 260
[38][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 310 bits (793), Expect = 7e-83
Identities = 154/197 (78%), Positives = 170/197 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AK EKI HEYS IVGI+E VHEILMNLKEIVL+SNLYG RDASIC +GP +VTAQ+II
Sbjct: 63 TCAKSEKIPHEYSNIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRHVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV I+D TQHIA++TEPI LCIGLQIER+RGY + T KN QDG Y IDA+FMPVRNA
Sbjct: 123 SPPSVEIIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHA EE ++N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFILKDN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
++KV LPLFT HD LAK
Sbjct: 243 QNKVALPLFTFHDRLAK 259
[39][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 309 bits (792), Expect = 9e-83
Identities = 154/189 (81%), Positives = 166/189 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+ NLYG R+A IC KGPGYVTAQ+II
Sbjct: 65 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDII 124
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQH+A++TEPI LCIGLQIER+RGY I T KNF DGSY IDA+FMPVRNA
Sbjct: 125 LPPSVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNA 184
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIH Y N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFI FLHA+EE L+ ENN
Sbjct: 185 NHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHLENN 244
Query: 51 EHKVTLPLF 25
+H VTL F
Sbjct: 245 QHDVTLHFF 253
[40][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 309 bits (791), Expect = 1e-82
Identities = 155/197 (78%), Positives = 172/197 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GP VTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTILGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRGVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA++TEPI LCIGLQ+ER+RGY I NFQDGS+ IDA+FMPVRN
Sbjct: 123 LPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL IPFLHA EE +N E+N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHA-EENVNLEDN 241
Query: 51 EHKVTLPLFTCHDLLAK 1
+HKV+LPLFT H+ LA+
Sbjct: 242 QHKVSLPLFTFHNRLAE 258
[41][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 308 bits (790), Expect = 2e-82
Identities = 152/195 (77%), Positives = 169/195 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E++ HEYSTI+GI+E VHEIL+NLKEIVL+SNLYG+RDASIC +GP YVTAQ+II
Sbjct: 63 TRAKSERVPHEYSTIIGIEESVHEILLNLKEIVLRSNLYGVRDASICVRGPRYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD TQHIAN+TEPI L I LQI+RDRGYR+ N QDGSY IDA+ MPVRNA
Sbjct: 123 LPPSVEIVDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NFE N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEEN 242
Query: 51 EHKVTLPLFTCHDLL 7
+++ TLP T D L
Sbjct: 243 KNRFTLPFLTFQDRL 257
[42][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 308 bits (789), Expect = 2e-82
Identities = 151/195 (77%), Positives = 170/195 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EK++HEYSTIVGI+E VHEIL+NLKEI+L+SNLYG+ DASIC +GP YVTAQ+II
Sbjct: 63 TRAKSEKVAHEYSTIVGIEESVHEILLNLKEIILRSNLYGVIDASICVRGPRYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PP V IVD TQHIAN+TEPI LCI LQI+RDRGYR+ + N QDGSY IDA+ MPVRNA
Sbjct: 123 SPPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NFE N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEEN 242
Query: 51 EHKVTLPLFTCHDLL 7
+++ LPLFT + L
Sbjct: 243 KNRFPLPLFTFQNRL 257
[43][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 308 bits (789), Expect = 2e-82
Identities = 154/194 (79%), Positives = 168/194 (86%), Gaps = 1/194 (0%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGI+E VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIA++TEP+ CIGLQIE +RGYR+ T N Q GSY IDA+FMPVRNA
Sbjct: 123 SPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNE QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N ++N
Sbjct: 183 NHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLKDN 242
Query: 51 E-HKVTLPLFTCHD 13
+ + VTLP FT HD
Sbjct: 243 QKNGVTLPFFTFHD 256
[44][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 307 bits (787), Expect = 4e-82
Identities = 150/193 (77%), Positives = 168/193 (87%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EK+ HEYSTIVGI+E VHEILMNLKEIV +S+LYG R ASIC +GP YVTAQ+II
Sbjct: 63 TRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVFRSHLYGTRGASICVRGPRYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQ+IA++TEPI LCI LQIERDRGYRI T N+QDGSY IDA+ MPVRNA
Sbjct: 123 SPPSVKIVDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGS TPKEALYEASRNLIDLF+PFLHAEE+ +N E+N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINVEDN 242
Query: 51 EHKVTLPLFTCHD 13
+++ T PLFT HD
Sbjct: 243 QNRATAPLFTFHD 255
[45][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 307 bits (786), Expect = 5e-82
Identities = 151/196 (77%), Positives = 169/196 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EK+ HEYST+VGI+E VHEIL NLKEIVL+SNLY IRDASIC +GP YVTAQ+II
Sbjct: 63 TRAKSEKVPHEYSTVVGIEESVHEILFNLKEIVLRSNLYEIRDASICVRGPRYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PP V IVD TQ+IAN+TEPI LCI L+I+RDRGYR+ + N QDGSY IDA+FMPVRNA
Sbjct: 123 SPPYVEIVDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +NFE N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINFEEN 242
Query: 51 EHKVTLPLFTCHDLLA 4
++K TLP T D L+
Sbjct: 243 KNKFTLPPLTFQDRLS 258
[46][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 305 bits (782), Expect = 1e-81
Identities = 153/197 (77%), Positives = 165/197 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E + HEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC +GPGYVTAQ+II
Sbjct: 37 TRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDII 96
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA++TEPI LCIGLQI+R+RGY I NFQDGSY IDA+FMPVRNA
Sbjct: 97 LPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNA 156
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEE L E+N
Sbjct: 157 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDN 216
Query: 51 EHKVTLPLFTCHDLLAK 1
+H V L T HD L K
Sbjct: 217 QHTVPLSPLTFHDKLDK 233
[47][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 304 bits (779), Expect = 3e-81
Identities = 152/197 (77%), Positives = 170/197 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AK EKI HEYSTIVGI+E VHEILMNLKEIVL+SNLYG DASIC KGP +TA++II
Sbjct: 63 THAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTCDASICVKGPINITAKDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIA++TEP LCIGLQIER+RGYR+ T Q+GSY IDA+FMPVRNA
Sbjct: 123 SPPSVEIVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ + E+N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIILEDN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+++VTLP FT HD LAK
Sbjct: 243 QNRVTLPFFTFHDGLAK 259
[48][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 304 bits (779), Expect = 3e-81
Identities = 153/197 (77%), Positives = 170/197 (86%), Gaps = 2/197 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EK+ HEYSTIVGI+E VHEILMNLKEIVLKSNLYG RDASIC +GP YVTAQ+II
Sbjct: 63 TRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIA++TEPI LCI LQIERDRGYR+ N+QDGSY IDA+ MPVRNA
Sbjct: 123 SPPSVEIVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE--KLNFE 58
NHSIHSY +GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ LN E
Sbjct: 183 NHSIHSYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLE 242
Query: 57 NNEHKVTLPLFTCHDLL 7
+N+++ T+ FT HD L
Sbjct: 243 DNQNRFTVSPFTLHDRL 259
[49][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 304 bits (778), Expect = 4e-81
Identities = 152/197 (77%), Positives = 166/197 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK HEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC KGPG VTA++II
Sbjct: 63 TRVKSEKAPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGCVTAEDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIA +TEPI CIGLQIER+RGY + T NF+DGSY IDA+FMPVRNA
Sbjct: 123 LPPSVEIVDNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDG 242
Query: 51 EHKVTLPLFTCHDLLAK 1
EH + L + HD +AK
Sbjct: 243 EHTIPLSPLSFHDKVAK 259
[50][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 303 bits (777), Expect = 5e-81
Identities = 150/195 (76%), Positives = 168/195 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EK+ HEYSTIVGI+E VHEILMNLKEIVL+SNLYG R+ASIC KGP +TA++II
Sbjct: 63 TRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTREASICVKGPKTITAEDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LP SV IVD TQHIA +TEP+ L IGLQI+RDRGYR+ N QDGSY IDA+FMPVRNA
Sbjct: 123 LPASVEIVDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSI+SY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ +N E N
Sbjct: 183 NHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLEEN 242
Query: 51 EHKVTLPLFTCHDLL 7
+ + TLPLFT HD L
Sbjct: 243 KSRFTLPLFTFHDKL 257
[51][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 303 bits (776), Expect = 7e-81
Identities = 152/197 (77%), Positives = 169/197 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKFEKISHEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+II
Sbjct: 63 TRAKFEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA +TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNA
Sbjct: 123 LPPYVEIVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGN +EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE LN E+N
Sbjct: 183 NHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDN 240
Query: 51 EHKVTLPLFTCHDLLAK 1
+H + LP FT +D LAK
Sbjct: 241 QHMIPLPPFTFYDKLAK 257
[52][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 303 bits (775), Expect = 9e-81
Identities = 147/195 (75%), Positives = 167/195 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NA
Sbjct: 123 LPPSVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHDLL 7
+H+VTLPLF H+ L
Sbjct: 243 QHQVTLPLFPFHNRL 257
[53][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 303 bits (775), Expect = 9e-81
Identities = 147/195 (75%), Positives = 167/195 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NA
Sbjct: 123 LPPSVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHDLL 7
+H+VTLPLF H+ L
Sbjct: 243 QHQVTLPLFPFHNRL 257
[54][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 302 bits (774), Expect = 1e-80
Identities = 152/195 (77%), Positives = 165/195 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+S YG DASIC +GPG VTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSTFYGTCDASICVRGPGGVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PP V IVD TQHIAN+TEPI L I LQ+ER+RGYRI T NFQDGSY ID +FMPVRN
Sbjct: 123 SPPYVEIVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+E + E+N
Sbjct: 183 NHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLEDN 242
Query: 51 EHKVTLPLFTCHDLL 7
+ +VTLPLF HD L
Sbjct: 243 QDRVTLPLFLFHDRL 257
[55][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 302 bits (774), Expect = 1e-80
Identities = 147/195 (75%), Positives = 166/195 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL EIVLKSNLYG R+ IC +GPGY+TA++II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNPFICVQGPGYITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NA
Sbjct: 123 LPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHDLL 7
+H+VTLP+F H+ L
Sbjct: 243 QHQVTLPVFPFHNKL 257
[56][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 302 bits (773), Expect = 2e-80
Identities = 154/200 (77%), Positives = 171/200 (85%), Gaps = 3/200 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK +KI HEYST+VGIQE VH+ILMNLKEIVL+SNLYG DASIC +GPGYVTAQ+II
Sbjct: 63 TRAKSKKIPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT-LKNFQDGSYNIDAIFMPVRN 235
LPP V +VDNTQHIA++TEPI+L IGLQIER RGY I T NFQDGSY IDA+FMP+RN
Sbjct: 123 LPPYVEVVDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRN 182
Query: 234 ANHSIHSY--VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
ANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+
Sbjct: 183 ANHSIHSYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 242
Query: 60 ENNEHKVTLPLFTCHDLLAK 1
+N+H V LP FT HD L K
Sbjct: 243 ADNQHMVPLPPFTFHDNLDK 262
[57][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 302 bits (773), Expect = 2e-80
Identities = 147/195 (75%), Positives = 166/195 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TAQ+II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA + EPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NA
Sbjct: 123 LPPSVEIIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHDLL 7
+H+VTLPLF H+ L
Sbjct: 243 QHQVTLPLFPFHNRL 257
[58][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 302 bits (773), Expect = 2e-80
Identities = 147/196 (75%), Positives = 168/196 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK +K+ HEYSTIVGI+E +HEI MNLKEIVL+SNLYG R+ASIC +GP YVTAQ+II
Sbjct: 63 TRAKLDKVPHEYSTIVGIEESIHEIFMNLKEIVLRSNLYGTRNASICVRGPRYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIA++TEPI LCI LQI+RDRGYR+ T +Q+GSY IDA+ MPVRNA
Sbjct: 123 SPPSVEIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E+N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRLEDN 242
Query: 51 EHKVTLPLFTCHDLLA 4
++ +P FT HD LA
Sbjct: 243 PNRFNIPFFTFHDGLA 258
[59][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 301 bits (772), Expect = 2e-80
Identities = 150/196 (76%), Positives = 169/196 (86%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK+ +EY TIVGI+E VHEILMNLKEIVL+S+LYG RDASIC +GP YVTAQ+II
Sbjct: 63 TRVKSEKVPNEYYTIVGIEESVHEILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIA++TEPI LCI LQIERDRGYR+ T N+QDGSY IDA+ MPVRNA
Sbjct: 123 PPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ + E+N
Sbjct: 183 NHSIHSYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVLEDN 242
Query: 51 EHKVTLPLFTCHDLLA 4
++ T+PLFT HD LA
Sbjct: 243 PNRFTVPLFTFHDRLA 258
[60][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 301 bits (771), Expect = 3e-80
Identities = 147/195 (75%), Positives = 166/195 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TAQ+II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NA
Sbjct: 123 LPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHDLL 7
+H+VTLPLF H+ L
Sbjct: 243 QHQVTLPLFPFHNRL 257
[61][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 301 bits (771), Expect = 3e-80
Identities = 152/197 (77%), Positives = 168/197 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKISHEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+II
Sbjct: 63 TRAKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V I+DNTQHIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNA
Sbjct: 123 LPPYVEILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGN +EILFLEIWTNGSLTPKEALYEASRNLIDL IPFLH +EE LN E N
Sbjct: 183 NHSIHSYENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNLEGN 240
Query: 51 EHKVTLPLFTCHDLLAK 1
+H V LP FT +D LAK
Sbjct: 241 QHMVPLPPFTFYDKLAK 257
[62][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 301 bits (771), Expect = 3e-80
Identities = 148/197 (75%), Positives = 166/197 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK++HEYSTI GIQE VHEILMNLKEIV +SNLYG DASIC +GPGYVTAQ+I+
Sbjct: 63 TRVKSEKVAHEYSTIAGIQESVHEILMNLKEIVFRSNLYGTCDASICVRGPGYVTAQDIV 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA + EPI LCI L+IER+RGY I T +NFQDGSY IDA+FMP+RNA
Sbjct: 123 LPPYVEIVDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPIRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ + ENN
Sbjct: 183 NYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHLENN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+H V L F HD L K
Sbjct: 243 QHTVPLAPFFFHDKLDK 259
[63][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 300 bits (769), Expect = 4e-80
Identities = 149/196 (76%), Positives = 167/196 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK+ HE+STIVGI+E VHEI+MNLKEIVL+SNLYG DASIC +GP YVTAQ+II
Sbjct: 63 TRVKSEKVPHEFSTIVGIEESVHEIVMNLKEIVLRSNLYGTLDASICIRGPRYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD TQHIAN+TE + LCI LQIERDRGY + T N +DGSY IDAIFMPVRNA
Sbjct: 123 LPPSVEIVDATQHIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHS+HSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE +++ E+N
Sbjct: 183 NHSVHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHLEDN 242
Query: 51 EHKVTLPLFTCHDLLA 4
+ V L LFT HD A
Sbjct: 243 ANGVPLALFTFHDEFA 258
[64][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 300 bits (768), Expect = 6e-80
Identities = 154/197 (78%), Positives = 166/197 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKI HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ+II
Sbjct: 63 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVDNTQHIA + EPI LCIGLQIER+RGY +GSY IDA+FMPVRNA
Sbjct: 123 SPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGY---------NGSYPIDAVFMPVRNA 173
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NG+E+QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E N
Sbjct: 174 NHSIHSYGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYN 233
Query: 51 EHKVTLPLFTCHDLLAK 1
+HK TLP T HD LAK
Sbjct: 234 QHKGTLPPLTFHDRLAK 250
[65][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 300 bits (767), Expect = 8e-80
Identities = 152/195 (77%), Positives = 167/195 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EK+ HEYSTIVGI+E VHEI +NLKEIVL NLYG+RDASIC +GP YVTAQ+II
Sbjct: 63 TRAKSEKVPHEYSTIVGIEESVHEIFINLKEIVL--NLYGVRDASICVRGPRYVTAQDII 120
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIAN+TEPI L I LQI+RDRGYRIN N QDGSY IDA+ MPVRNA
Sbjct: 121 SPPSVEIVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNA 180
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE ++FE N
Sbjct: 181 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHFEEN 240
Query: 51 EHKVTLPLFTCHDLL 7
+++ TLPLFT + L
Sbjct: 241 KNRFTLPLFTFQNRL 255
[66][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 300 bits (767), Expect = 8e-80
Identities = 147/195 (75%), Positives = 166/195 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIA VTE I LCIGL+IER+RGY + NF+D SY IDA+FMPV+NA
Sbjct: 123 LPPSVEIVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGN KQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE + ENN
Sbjct: 183 NHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHLENN 242
Query: 51 EHKVTLPLFTCHDLL 7
+H+VTLPLF H+ L
Sbjct: 243 QHQVTLPLFPFHNRL 257
[67][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 299 bits (766), Expect = 1e-79
Identities = 151/197 (76%), Positives = 169/197 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK +KISHEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+II
Sbjct: 63 TRAKSDKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTYEASICVRGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNA
Sbjct: 123 LPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGN +EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE LN E+N
Sbjct: 183 NHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDN 240
Query: 51 EHKVTLPLFTCHDLLAK 1
+H V LP FT +D LAK
Sbjct: 241 QHIVPLPPFTFYDKLAK 257
[68][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 298 bits (764), Expect = 2e-79
Identities = 145/195 (74%), Positives = 166/195 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NA
Sbjct: 123 LPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE + ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYLENN 242
Query: 51 EHKVTLPLFTCHDLL 7
+H+VTLP F H+ L
Sbjct: 243 QHQVTLPFFPFHNRL 257
[69][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 298 bits (764), Expect = 2e-79
Identities = 146/197 (74%), Positives = 167/197 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL+EIVL+SNLYG +A IC +GPG +TA++II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGSITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA +TEPI LCIGLQIER+RGY + +F+DGSY IDA+FMPV+NA
Sbjct: 123 LPPSVEIIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNEKQEILFLEIWTNG+LTPKEAL+EASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
+HKVTLPLF H+ L K
Sbjct: 243 QHKVTLPLFPFHNRLVK 259
[70][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 298 bits (763), Expect = 2e-79
Identities = 144/182 (79%), Positives = 162/182 (89%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EK+ HEYST+VGIQE VHEILMNLKEIVL+SNLYG DA+IC KGPGYVTAQ+II
Sbjct: 63 TRAKSEKLPHEYSTLVGIQESVHEILMNLKEIVLRSNLYGTCDAAICVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PP V I+DNTQHIA++TEPI+LCIGLQIER+RGY I T KNFQDGSY IDA+FMPVRN
Sbjct: 123 SPPYVEIIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSI+SY GN+K EILFLEIWTNGSLTPKEAL+EA+RNLIDLFIPFLH EEE L+ E+N
Sbjct: 183 NHSIYSYGTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDLEDN 242
Query: 51 EH 46
+H
Sbjct: 243 QH 244
[71][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 298 bits (763), Expect = 2e-79
Identities = 145/195 (74%), Positives = 165/195 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NA
Sbjct: 123 LPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHDLL 7
+H+VTLP F H+ L
Sbjct: 243 QHQVTLPFFPFHNRL 257
[72][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 297 bits (760), Expect = 5e-79
Identities = 150/197 (76%), Positives = 169/197 (85%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK EKISHEY+TI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+II
Sbjct: 63 TRAKSEKISHEYATIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNA
Sbjct: 123 LPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGN +EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE L+ E+N
Sbjct: 183 NHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSLEDN 240
Query: 51 EHKVTLPLFTCHDLLAK 1
+H V LP FT +D LAK
Sbjct: 241 QHIVPLPPFTFYDKLAK 257
[73][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 297 bits (760), Expect = 5e-79
Identities = 144/193 (74%), Positives = 163/193 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++II
Sbjct: 63 TRVKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVDNTQHIA +TEPI LCIGL+IER+RGY + N +D SY IDA+FMPV+NA
Sbjct: 123 LPPSVEIVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHD 13
+H+VTLP F H+
Sbjct: 243 QHQVTLPFFPFHN 255
[74][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 296 bits (758), Expect = 8e-79
Identities = 145/195 (74%), Positives = 164/195 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGARNAIICVQGPGYITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA +TE I LCIGL+IER+RGY + L F+D SY IDA+FMPV+NA
Sbjct: 123 LPPSVEIIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGN KQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHDLL 7
+H VTLPLF H+ L
Sbjct: 243 QHHVTLPLFPFHNRL 257
[75][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 296 bits (757), Expect = 1e-78
Identities = 146/197 (74%), Positives = 165/197 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS IVGIQE VHEILMNL+EIVL+SNLYG +A IC +GPGY+TA++II
Sbjct: 63 TRAKSENIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGYITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+DNTQHIA +TEPI LCIGLQIER+RGY + F+DGSY IDA+FMPV+NA
Sbjct: 123 LPPSVEIMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNE QEILFLEIWTNG+LTPKEAL+EASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHDLLAK 1
E KVTLPLF H+ L K
Sbjct: 243 EDKVTLPLFPFHNRLVK 259
[76][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 294 bits (753), Expect = 3e-78
Identities = 149/197 (75%), Positives = 167/197 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR KF K SHEYSTI GIQE VHEI MNLKEIVL+SNLYG DASI KGPG+VTA++II
Sbjct: 63 TRVKFAKASHEYSTIAGIQESVHEIFMNLKEIVLRSNLYGTCDASISIKGPGHVTAKDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVD+TQHIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPVRNA
Sbjct: 123 LPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+
Sbjct: 183 NHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDA 240
Query: 51 EHKVTLPLFTCHDLLAK 1
+H ++L FT +D +AK
Sbjct: 241 DHTISLSPFTVYDKVAK 257
[77][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 294 bits (752), Expect = 4e-78
Identities = 144/193 (74%), Positives = 164/193 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK +K+ HEYSTIVGI+E VHEILMNLK+IV +S+LYG DASIC +GP +VTAQ+II
Sbjct: 63 TRAKSDKVPHEYSTIVGIEESVHEILMNLKKIVFRSDLYGTLDASICVRGPRHVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIA +TEP+ LCI L+IER RGY + T N+QDGSY IDA+ MPVRNA
Sbjct: 123 SPPSVEIVDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ +N E+N
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINIEDN 242
Query: 51 EHKVTLPLFTCHD 13
+ T+P FT HD
Sbjct: 243 LKRATVPFFTFHD 255
[78][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 294 bits (752), Expect = 4e-78
Identities = 142/195 (72%), Positives = 163/195 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK E I H+YS I GIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++II
Sbjct: 63 TRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP+V I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV NA
Sbjct: 123 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENN
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENN 242
Query: 51 EHKVTLPLFTCHDLL 7
+H+VTLP F H+ L
Sbjct: 243 QHQVTLPFFPFHNRL 257
[79][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 291 bits (745), Expect = 3e-77
Identities = 141/193 (73%), Positives = 163/193 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRA E + HEYSTI GI+E VHEIL+NLK+IVL+SNLYG+R+ASIC +GP Y+TAQ+II
Sbjct: 63 TRATSENVLHEYSTIAGIEESVHEILLNLKDIVLRSNLYGVRNASICVRGPKYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIAN+TEPI LCI LQI+RDRGYR+ + + DGSY ID + MPVRNA
Sbjct: 123 SPPSVEIVDTTQHIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLIDL IPFLHAEEE +NF+ N
Sbjct: 183 NHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNFKEN 242
Query: 51 EHKVTLPLFTCHD 13
E++ LP F+ D
Sbjct: 243 ENRWNLPPFSFQD 255
[80][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 290 bits (743), Expect = 5e-77
Identities = 145/193 (75%), Positives = 158/193 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K + + HEYSTI GIQE VHEILMN KEIVL+SNLYG DASIC +GPGYVTAQ+II
Sbjct: 63 TRVKSKNVPHEYSTIAGIQESVHEILMNFKEIVLRSNLYGTCDASICVRGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA++TEPI LCIGLQIER+RGY + N QDGSY IDA+FMPVRNA
Sbjct: 123 LPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY +GNEK EILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEE E+N
Sbjct: 183 NHSIHSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLEDN 242
Query: 51 EHKVTLPLFTCHD 13
H V L T HD
Sbjct: 243 HHTVPLSPLTFHD 255
[81][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 290 bits (742), Expect = 6e-77
Identities = 148/197 (75%), Positives = 165/197 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR KF SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI FKGPGYVTA++II
Sbjct: 63 TRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAEDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVD+TQHIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV+NA
Sbjct: 123 LPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L E+
Sbjct: 183 NHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDA 240
Query: 51 EHKVTLPLFTCHDLLAK 1
+H + L FT + +AK
Sbjct: 241 DHTIPLSPFTVYYKVAK 257
[82][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 290 bits (742), Expect = 6e-77
Identities = 148/197 (75%), Positives = 165/197 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR KF SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI FKGPGYVTA++II
Sbjct: 63 TRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAEDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVD+TQHIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV+NA
Sbjct: 123 LPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L E+
Sbjct: 183 NHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDA 240
Query: 51 EHKVTLPLFTCHDLLAK 1
+H + L FT + +AK
Sbjct: 241 DHTIPLSPFTVYYKVAK 257
[83][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 290 bits (741), Expect = 8e-77
Identities = 145/190 (76%), Positives = 160/190 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK K+ HEYSTIVGI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKSGKVPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIAN+TEPI LCI LQI+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 123 SPPSVEIVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI+S N NEK EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE NFE N
Sbjct: 183 NYSIYSCGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNFEEN 242
Query: 51 EHKVTLPLFT 22
+++ TLPL T
Sbjct: 243 KNRFTLPLLT 252
[84][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 288 bits (737), Expect = 2e-76
Identities = 148/198 (74%), Positives = 166/198 (83%), Gaps = 2/198 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK +KI HEYSTIVGI+E VH+ILMNLKEIVL+SNLYG DASI +GP VTAQ+II
Sbjct: 63 TRAKSDKIPHEYSTIVGIEESVHQILMNLKEIVLRSNLYGTCDASIFVRGPRCVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSY--NIDAIFMPVR 238
PPSV +VD TQHIA++TEPI LCIGLQIERDRGYR+ T N QDGSY I+A+ MPVR
Sbjct: 123 SPPSVKMVDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSMPVR 182
Query: 237 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 58
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EAS NLIDLFIPFLH EEE +N E
Sbjct: 183 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDINLE 242
Query: 57 NNEHKVTLPLFTCHDLLA 4
++ ++ TLP FT D LA
Sbjct: 243 DSLNRGTLPFFTFQDKLA 260
[85][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 287 bits (734), Expect = 5e-76
Identities = 141/190 (74%), Positives = 160/190 (84%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPKYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ +KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[86][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 286 bits (732), Expect = 9e-76
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[87][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 286 bits (732), Expect = 9e-76
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[88][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[89][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[90][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[91][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 286 bits (731), Expect = 1e-75
Identities = 144/197 (73%), Positives = 164/197 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR KF SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI KGPGYVTA++II
Sbjct: 63 TRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAEDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V +VD+TQHIA + EPI LCIGL+IER+RGY + T NF+DGSY IDA+FMPV+NA
Sbjct: 123 LPPHVEVVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L+ E+
Sbjct: 183 NHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHLEDA 240
Query: 51 EHKVTLPLFTCHDLLAK 1
+ + L FT +D +AK
Sbjct: 241 DRTIPLSPFTVYDKVAK 257
[92][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[93][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[94][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[95][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[96][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[97][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[98][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[99][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[100][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 285 bits (730), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[101][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 285 bits (730), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[102][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 285 bits (730), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[103][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 285 bits (730), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNL 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[104][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 285 bits (730), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[105][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 285 bits (730), Expect = 1e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[106][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 285 bits (729), Expect = 2e-75
Identities = 141/190 (74%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[107][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 285 bits (728), Expect = 2e-75
Identities = 146/197 (74%), Positives = 163/197 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR KF SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI KGPGYVTA++II
Sbjct: 63 TRVKFANTSHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAEDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVD+TQHIA +TEPI IGL+IER+ GY I T NF+DGSY IDA+FMPVRNA
Sbjct: 123 LPPHVEIVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSI+SY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+
Sbjct: 183 NHSINSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDA 240
Query: 51 EHKVTLPLFTCHDLLAK 1
+H + L FT +D +AK
Sbjct: 241 DHTIPLSPFTVYDKVAK 257
[108][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 284 bits (726), Expect = 4e-75
Identities = 140/189 (74%), Positives = 159/189 (84%)
Frame = -2
Query: 588 RAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIIL 409
RAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IIL
Sbjct: 64 RAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIIL 123
Query: 408 PPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNAN 229
PPSV IVD +Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N
Sbjct: 124 PPSVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVN 183
Query: 228 HSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 49
+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+
Sbjct: 184 YSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENK 243
Query: 48 HKVTLPLFT 22
++ T PLFT
Sbjct: 244 NRFTPPLFT 252
[109][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 284 bits (726), Expect = 4e-75
Identities = 140/190 (73%), Positives = 158/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV VD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[110][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 284 bits (726), Expect = 4e-75
Identities = 140/189 (74%), Positives = 158/189 (83%)
Frame = -2
Query: 588 RAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIIL 409
RAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IIL
Sbjct: 64 RAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIIL 123
Query: 408 PPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNAN 229
PPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N
Sbjct: 124 PPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVN 183
Query: 228 HSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 49
+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+
Sbjct: 184 YSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENK 243
Query: 48 HKVTLPLFT 22
++ T PLFT
Sbjct: 244 NRFTPPLFT 252
[111][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 283 bits (725), Expect = 6e-75
Identities = 140/190 (73%), Positives = 158/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+ EPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[112][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 283 bits (725), Expect = 6e-75
Identities = 141/190 (74%), Positives = 158/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[113][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 283 bits (724), Expect = 7e-75
Identities = 140/190 (73%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI L+I+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[114][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 283 bits (724), Expect = 7e-75
Identities = 139/190 (73%), Positives = 158/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD TQ IAN+ EPI CI LQI+RDRGY KN QDGSY IDA+FMPVRN
Sbjct: 123 LPPSVEIVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
++++T PL T
Sbjct: 243 KNRLTPPLLT 252
[115][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 283 bits (724), Expect = 7e-75
Identities = 140/190 (73%), Positives = 158/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T P FT
Sbjct: 243 KNRFTPPPFT 252
[116][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 283 bits (724), Expect = 7e-75
Identities = 140/190 (73%), Positives = 158/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T P FT
Sbjct: 243 KNRFTPPPFT 252
[117][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 283 bits (723), Expect = 9e-75
Identities = 140/190 (73%), Positives = 158/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NG EK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[118][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 282 bits (722), Expect = 1e-74
Identities = 138/190 (72%), Positives = 158/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFWNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD TQ IAN+ EP+ CI LQI+RDRGY KN QDGSY IDA+FMPVRN
Sbjct: 123 LPPSVEIVDTTQPIANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
++++T PL T
Sbjct: 243 KNRLTPPLLT 252
[119][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 282 bits (721), Expect = 2e-74
Identities = 140/190 (73%), Positives = 159/190 (83%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASI KGP Y+TAQ+II
Sbjct: 68 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASISVKGPRYITAQDII 127
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD +Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 128 LPPSVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 187
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 188 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 247
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 248 KNRFTPPLFT 257
[120][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 281 bits (719), Expect = 3e-74
Identities = 138/190 (72%), Positives = 157/190 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD TQ IAN+ EP+ CI LQI+RDR Y KN QDGSY IDA+FMPVRN
Sbjct: 123 LPPSVEIVDTTQPIANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
++++T PL T
Sbjct: 243 KNRLTPPLLT 252
[121][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 281 bits (718), Expect = 4e-74
Identities = 139/190 (73%), Positives = 157/190 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP +TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILVNLKEIVLRSNLYGVRDASICVKGPRCITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV +VD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEVVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[122][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 281 bits (718), Expect = 4e-74
Identities = 140/190 (73%), Positives = 156/190 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PL T
Sbjct: 243 KNRFTPPLLT 252
[123][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 280 bits (716), Expect = 6e-74
Identities = 139/190 (73%), Positives = 157/190 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ M VRN
Sbjct: 123 LPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PL T
Sbjct: 243 KNRFTPPLLT 252
[124][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 280 bits (716), Expect = 6e-74
Identities = 139/195 (71%), Positives = 161/195 (82%), Gaps = 2/195 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAK +K+ HEYST+VGI+E VHEILMNLK++V +S+LYG DASIC +GP +VTAQ+II
Sbjct: 63 TRAKSDKVPHEYSTVVGIEESVHEILMNLKKMVFRSDLYGTLDASICVRGPRHVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIA +TEP+ LCI L+IER RGY T N+QDGSY IDA+ MPVRNA
Sbjct: 123 SPPSVEIVDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL--NFE 58
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ + N E
Sbjct: 183 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINRNME 242
Query: 57 NNEHKVTLPLFTCHD 13
+N + ++P F D
Sbjct: 243 DNLKRASVPFFAFDD 257
[125][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 279 bits (714), Expect = 1e-73
Identities = 137/190 (72%), Positives = 157/190 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+ EPI CI LQI+RDRGY KN QDGSY IDA+FMPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE +
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEES 242
Query: 51 EHKVTLPLFT 22
++++T PL T
Sbjct: 243 KNRLTPPLLT 252
[126][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 279 bits (714), Expect = 1e-73
Identities = 139/190 (73%), Positives = 156/190 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSXPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY+ KN+QDGSY I + MPVRN
Sbjct: 123 LPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PLFT
Sbjct: 243 KNRFTPPLFT 252
[127][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 278 bits (712), Expect = 2e-73
Identities = 143/195 (73%), Positives = 156/195 (80%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E + HEYSTI GIQE V EILMNLKEIVL+SNLYG ASIC +GPGYVTAQ+II
Sbjct: 48 TRVKSENVPHEYSTIAGIQESVPEILMNLKEIVLRSNLYGTCGASICARGPGYVTAQDII 107
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V I DNTQHIA +TEPI CIGL+IER RGY I + FQD SY IDA+FMPVRN
Sbjct: 108 LPPCVEIGDNTQHIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNV 167
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L ENN
Sbjct: 168 NHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLENN 225
Query: 51 EHKVTLPLFTCHDLL 7
+ V+ F+ H+ L
Sbjct: 226 QDTVSFSPFSFHEKL 240
[128][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 278 bits (710), Expect = 3e-73
Identities = 139/190 (73%), Positives = 155/190 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 63 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEPI CI LQI+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N
Sbjct: 183 NYSIFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 242
Query: 51 EHKVTLPLFT 22
+++ T PL T
Sbjct: 243 KNRFTPPLLT 252
[129][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 274 bits (701), Expect = 3e-72
Identities = 138/196 (70%), Positives = 160/196 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AK E++ HEYSTIVGI+E VHEILMNLKEI+++S+LYG RDA IC +GP YVTAQ+II
Sbjct: 63 TCAKSERVPHEYSTIVGIEESVHEILMNLKEIIVRSDLYGTRDAFICVRGPKYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PPSV IVD TQHIA++TEPI CIGL+IER+RGYR T QD SY IDA+ MPVRNA
Sbjct: 123 SPPSVKIVDTTQHIASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSMPVRNA 180
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI Y N NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE L+ +++
Sbjct: 181 NYSIQCYGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHLDDD 240
Query: 51 EHKVTLPLFTCHDLLA 4
++ T P F H+ LA
Sbjct: 241 QNIFTAPFFPFHEGLA 256
[130][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 268 bits (686), Expect = 2e-70
Identities = 139/197 (70%), Positives = 160/197 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKFEK+ HEYSTI GIQE VHEILMNLKEIVL+SNLYG +ASIC KGPGYVTAQ+II
Sbjct: 63 TRAKFEKVPHEYSTIRGIQESVHEILMNLKEIVLRSNLYGTCEASICVKGPGYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
PP V IVDNTQHIA++TEPI+L I LQIE++R ++ FQDGSY I A+ MPVR+
Sbjct: 123 SPPYVEIVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPVRHM 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHS +GN KQEILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EE N ENN
Sbjct: 183 NYSIHS--SGNGKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEG--NLENN 238
Query: 51 EHKVTLPLFTCHDLLAK 1
+ ++ P FT +D L+K
Sbjct: 239 QDRIPFPSFTFYDKLSK 255
[131][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 267 bits (683), Expect = 4e-70
Identities = 134/197 (68%), Positives = 160/197 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR F+ SHEYS I GIQE VH+ILMNLKEIVLKSNLYG DAS+ KGP YVTAQ+II
Sbjct: 63 TRVTFQNASHEYSIIAGIQESVHDILMNLKEIVLKSNLYGTCDASLYIKGPRYVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVD+TQHIA++TEPI LCIGL+IER+RGY I FQ+ +Y++DA+FMPV N
Sbjct: 123 LPPHVEIVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPVLNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSI+SY GNEK+EILFLEIWTNGSLTPKEAL+EA++NL+DLFIPFL EEE LN E+
Sbjct: 183 NHSIYSY--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNLEDA 240
Query: 51 EHKVTLPLFTCHDLLAK 1
EH++ FT +D ++K
Sbjct: 241 EHQIPFSPFTFYDKVSK 257
[132][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 264 bits (675), Expect = 3e-69
Identities = 132/190 (69%), Positives = 151/190 (79%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II
Sbjct: 43 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDII 102
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP+ I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 103 LPPSVEIVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNV 162
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 163 NYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQEN 222
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 223 KNRFTSPLLS 232
[133][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 263 bits (671), Expect = 1e-68
Identities = 131/190 (68%), Positives = 150/190 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ+II
Sbjct: 43 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDII 102
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 103 LPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 162
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 163 NYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQEN 222
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 223 QNRFTSPLLS 232
[134][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 262 bits (670), Expect = 1e-68
Identities = 131/190 (68%), Positives = 150/190 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ+II
Sbjct: 43 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDII 102
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 103 LPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 162
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 163 NYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQEN 222
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 223 KNRFTSPLLS 232
[135][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 261 bits (668), Expect = 2e-68
Identities = 131/190 (68%), Positives = 150/190 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ+II
Sbjct: 43 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDII 102
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 103 LPPSVEIVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 162
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 163 NYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQEN 222
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 223 KNRFTSPLLS 232
[136][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 261 bits (667), Expect = 3e-68
Identities = 137/197 (69%), Positives = 153/197 (77%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC KGP +VTAQ+II
Sbjct: 63 TRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYGTCDASICIKGPRHVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA +TEPI IGL+IER+RGY +F DG Y IDA+FMPV+NA
Sbjct: 123 LPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EA+R LID FIPF H EEE L +
Sbjct: 183 NHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYLADA 240
Query: 51 EHKVTLPLFTCHDLLAK 1
EH + L ++ + K
Sbjct: 241 EHTIPLSSLIFYNKVTK 257
[137][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 260 bits (665), Expect = 5e-68
Identities = 130/190 (68%), Positives = 149/190 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+II
Sbjct: 151 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDII 210
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 211 LPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 270
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 271 NYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQEN 330
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 331 KNRFTSPLLS 340
[138][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 260 bits (665), Expect = 5e-68
Identities = 130/190 (68%), Positives = 149/190 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+II
Sbjct: 63 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 183 NYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQEN 242
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 243 KNRFTSPLLS 252
[139][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 260 bits (665), Expect = 5e-68
Identities = 130/190 (68%), Positives = 149/190 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+II
Sbjct: 172 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDII 231
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 232 LPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 291
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 292 NYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQEN 351
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 352 KNRFTSPLLS 361
[140][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 260 bits (665), Expect = 5e-68
Identities = 130/190 (68%), Positives = 149/190 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+II
Sbjct: 43 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDII 102
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 103 LPPSVEIVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 162
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 163 NYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQEN 222
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 223 KNRFTSPLLS 232
[141][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 260 bits (665), Expect = 5e-68
Identities = 130/190 (68%), Positives = 149/190 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+II
Sbjct: 63 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 123 LPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 183 NYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQEN 242
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 243 KNRFTSPLLS 252
[142][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 259 bits (662), Expect = 1e-67
Identities = 129/190 (67%), Positives = 149/190 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+II
Sbjct: 172 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDII 231
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 232 LPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 291
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI + NGN + EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 292 NYSIFACGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQEN 351
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 352 KNRFTSPLLS 361
[143][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 258 bits (659), Expect = 3e-67
Identities = 129/190 (67%), Positives = 148/190 (77%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+II
Sbjct: 43 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDII 102
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 103 LPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 162
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SI + NGN K EILFLEIWTNGSLTP EALYEASRNLIDLF+PFLH EEE F+ N
Sbjct: 163 NYSIFACGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRFQEN 222
Query: 51 EHKVTLPLFT 22
+++ T PL +
Sbjct: 223 KNRFTSPLLS 232
[144][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 257 bits (656), Expect = 6e-67
Identities = 136/196 (69%), Positives = 154/196 (78%), Gaps = 5/196 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKFEKI HEY+TIVGIQE ++EILMNLKEIVL+SNL G RDASIC +GP VTAQ+II
Sbjct: 63 THAKFEKIPHEYTTIVGIQESIYEILMNLKEIVLRSNLDGTRDASICVRGPRDVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIFMPV 241
LP S IVDNTQHI +TEPI CIGLQI+R+RGY +I NF D Y IDA+F+PV
Sbjct: 123 LPNSAAIVDNTQHIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVFLPV 182
Query: 240 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
+N NHSIHSY NG+ E+LFLEIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE +F
Sbjct: 183 KNVNHSIHSYENGS--HEMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFHF 240
Query: 60 EN--NEHKVTLPLFTC 19
EN NEH LP+ C
Sbjct: 241 ENNQNEHTDELPIDLC 256
[145][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 257 bits (656), Expect = 6e-67
Identities = 127/196 (64%), Positives = 159/196 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AK EK++HEYS I+GI+E VH+IL+NLKEIVL+S+ YG R+ASIC GP VTAQ+II
Sbjct: 63 THAKLEKVTHEYSAIIGIEESVHDILINLKEIVLRSDPYGTREASICIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA++T+ I I L IE+DRGYRI + KN+QDG + IDA+FMPVRNA
Sbjct: 123 LPPSVRIIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY NGN+ QEILFLEIWTNGSL P+EALY ASRNLIDLFIPFL AEE+ ++ +N
Sbjct: 183 NYSIHSYGNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDGMDN 242
Query: 51 EHKVTLPLFTCHDLLA 4
++ +P F+ ++ A
Sbjct: 243 QNGSNMPSFSFSNISA 258
[146][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 256 bits (655), Expect = 7e-67
Identities = 134/187 (71%), Positives = 149/187 (79%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK SHEYSTI GIQE VHEILMNLKEIVL+SNLY DASIC KGP +VTAQ+II
Sbjct: 63 TRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA +TEPI IGL+IER+RGY +F DGSY IDA+FMPV+NA
Sbjct: 123 LPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+E++R LID FIPF EEE L +
Sbjct: 183 NHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADA 240
Query: 51 EHKVTLP 31
+H + LP
Sbjct: 241 KHTIXLP 247
[147][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 256 bits (655), Expect = 7e-67
Identities = 134/187 (71%), Positives = 149/187 (79%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K EK SHEYSTI GIQE VHEILMNLKEIVL+SNLY DASIC KGP +VTAQ+II
Sbjct: 63 TRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPP V IVDNTQHIA +TEPI IGL+IER+RGY +F DGSY IDA+FMPV+NA
Sbjct: 123 LPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+E++R LID FIPF EEE L +
Sbjct: 183 NHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADA 240
Query: 51 EHKVTLP 31
+H + LP
Sbjct: 241 KHTIPLP 247
[148][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 256 bits (653), Expect = 1e-66
Identities = 129/188 (68%), Positives = 151/188 (80%), Gaps = 3/188 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKFEKI HEY+T+VGIQE V+EI+MNLKEIVL+SNLYG RDASIC +GP VTAQ+II
Sbjct: 63 TYAKFEKIPHEYTTLVGIQESVYEIVMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRIN---TLKNFQDGSYNIDAIFMPV 241
LPPSV IVDNTQHI +TEPI C+GLQIER+RGY + + D Y IDA+FMPV
Sbjct: 123 LPPSVAIVDNTQHIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVFMPV 182
Query: 240 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
+N NHSIH+Y NG+ E+LF EIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE +
Sbjct: 183 KNVNHSIHAYENGS--HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENSHL 240
Query: 60 ENNEHKVT 37
ENN+++ T
Sbjct: 241 ENNQNQHT 248
[149][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 254 bits (650), Expect = 3e-66
Identities = 132/186 (70%), Positives = 153/186 (82%), Gaps = 3/186 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T A+FEKI HEY+T VGIQE V+EI+MNLKEIVL+S+LYG RDASIC +GP VTAQ+II
Sbjct: 63 THAQFEKIPHEYTTRVGIQESVYEIVMNLKEIVLRSSLYGTRDASICVRGPRDVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQD-GSYNIDAIFMPV 241
LPPSV IVDNTQHI +TEPI+ C+ LQIER+RGY RI T N D Y IDA+FMPV
Sbjct: 123 LPPSVSIVDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVFMPV 182
Query: 240 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
+N NHSIHSY NG+ E+LF EIWTNGSLTPKEAL EASR LI+LFIPFLHAEEEK +F
Sbjct: 183 KNVNHSIHSYENGS--HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEKPHF 240
Query: 60 ENNEHK 43
ENN+++
Sbjct: 241 ENNQNE 246
[150][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 251 bits (641), Expect = 3e-65
Identities = 131/196 (66%), Positives = 152/196 (77%), Gaps = 5/196 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF+KI HEY+T+VGIQE ++EILMNLKEIVL+S+LYG RDASIC +GP VTAQ+II
Sbjct: 63 THAKFDKIPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIFMPV 241
LP S IVDNTQHI +TEPI C+GLQIER+RGY +I L N D Y ID++FMPV
Sbjct: 123 LPTSATIVDNTQHIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVFMPV 182
Query: 240 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
+N NHSIHSY NG +LFLEIWTNGSLTPKEAL EASR L +LFIPFLHAEE+ +F
Sbjct: 183 KNVNHSIHSYENG--IHAMLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQNFHF 240
Query: 60 EN--NEHKVTLPLFTC 19
EN NEH LP+ C
Sbjct: 241 ENNQNEHTDELPIDFC 256
[151][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 250 bits (639), Expect = 5e-65
Identities = 126/177 (71%), Positives = 140/177 (79%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF + HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+II
Sbjct: 172 THAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDII 231
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV IVD Q IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN
Sbjct: 232 LPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNV 291
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 292 NYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 348
[152][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 249 bits (637), Expect = 9e-65
Identities = 123/181 (67%), Positives = 149/181 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[153][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 249 bits (635), Expect = 2e-64
Identities = 123/181 (67%), Positives = 149/181 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[154][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 249 bits (635), Expect = 2e-64
Identities = 123/181 (67%), Positives = 149/181 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[155][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 249 bits (635), Expect = 2e-64
Identities = 123/181 (67%), Positives = 149/181 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[156][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 249 bits (635), Expect = 2e-64
Identities = 123/181 (67%), Positives = 149/181 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPKNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[157][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 249 bits (635), Expect = 2e-64
Identities = 123/181 (67%), Positives = 149/181 (82%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[158][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 248 bits (632), Expect = 3e-64
Identities = 123/195 (63%), Positives = 153/195 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YG+R+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGVREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 EHKVTLPLFTCHDLL 7
+P F +L
Sbjct: 243 RKGSNMPPFPLSHVL 257
[159][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 247 bits (631), Expect = 4e-64
Identities = 125/195 (64%), Positives = 153/195 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 EHKVTLPLFTCHDLL 7
+ + F LL
Sbjct: 243 KKGSNMLPFPLSHLL 257
[160][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 247 bits (631), Expect = 4e-64
Identities = 125/195 (64%), Positives = 153/195 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 EHKVTLPLFTCHDLL 7
+ + F LL
Sbjct: 243 KKGSNMLPFPLSHLL 257
[161][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 247 bits (631), Expect = 4e-64
Identities = 125/195 (64%), Positives = 153/195 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 EHKVTLPLFTCHDLL 7
+ + F LL
Sbjct: 243 KKGSNMLPFPLSHLL 257
[162][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 247 bits (631), Expect = 4e-64
Identities = 125/195 (64%), Positives = 153/195 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 EHKVTLPLFTCHDLL 7
+ + F LL
Sbjct: 243 KKGSNMLPFPLSHLL 257
[163][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 247 bits (631), Expect = 4e-64
Identities = 122/181 (67%), Positives = 148/181 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[164][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 247 bits (631), Expect = 4e-64
Identities = 125/195 (64%), Positives = 153/195 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 EHKVTLPLFTCHDLL 7
+ + F LL
Sbjct: 243 KKGSNMLPFPLSHLL 257
[165][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 246 bits (629), Expect = 8e-64
Identities = 122/181 (67%), Positives = 148/181 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N
Sbjct: 183 NYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNK 242
Query: 51 E 49
+
Sbjct: 243 K 243
[166][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 246 bits (629), Expect = 8e-64
Identities = 122/181 (67%), Positives = 148/181 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N
Sbjct: 183 NYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNK 242
Query: 51 E 49
+
Sbjct: 243 K 243
[167][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 246 bits (629), Expect = 8e-64
Identities = 122/181 (67%), Positives = 148/181 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N
Sbjct: 183 NYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNK 242
Query: 51 E 49
+
Sbjct: 243 K 243
[168][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 246 bits (627), Expect = 1e-63
Identities = 123/195 (63%), Positives = 152/195 (77%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDL IPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNN 242
Query: 51 EHKVTLPLFTCHDLL 7
+P F +L
Sbjct: 243 RKGSNMPPFPLSHVL 257
[169][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 245 bits (626), Expect = 2e-63
Identities = 121/181 (66%), Positives = 148/181 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[170][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 245 bits (626), Expect = 2e-63
Identities = 121/181 (66%), Positives = 148/181 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[171][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 245 bits (626), Expect = 2e-63
Identities = 126/188 (67%), Positives = 149/188 (79%), Gaps = 3/188 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF+KI HEY+T+VGIQE ++EILMNLKEIVL+S+LYG RDASIC +GP VT+Q+II
Sbjct: 63 THAKFDKIPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTSQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIFMPV 241
LP IVDNTQHI +TEPI C+GLQIER+RGY +I L N D Y IDA+FMPV
Sbjct: 123 LPTFATIVDNTQHIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVFMPV 182
Query: 240 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
+N NHSIHSY NG +LFLEIWTNGSLTPKEAL ASR LI+LFIPFLHAEE+ +F
Sbjct: 183 KNVNHSIHSYENG--IHAMLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQNCHF 240
Query: 60 ENNEHKVT 37
ENN+++ T
Sbjct: 241 ENNQNEHT 248
[172][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 245 bits (626), Expect = 2e-63
Identities = 121/181 (66%), Positives = 148/181 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[173][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 244 bits (622), Expect = 5e-63
Identities = 120/181 (66%), Positives = 147/181 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[174][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 244 bits (622), Expect = 5e-63
Identities = 130/198 (65%), Positives = 150/198 (75%), Gaps = 7/198 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF KI HEY+TI GI+E ++EILMNLKEIVL+SNLYG RDASIC +GP VTAQ+II
Sbjct: 63 THAKFAKIPHEYTTIAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRIN----TLKNFQDGSYNIDAIFMP 244
LPPS IVDNTQHI +TEPI C+GL+IER RGY I T D +Y IDA+FMP
Sbjct: 123 LPPSTAIVDNTQHIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAVFMP 182
Query: 243 VRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 64
VRN NHSIHSY G+ E+LFLEIWTNGSLTPKEAL EASR LI+L +PFLHAEEE
Sbjct: 183 VRNVNHSIHSYERGS--HEMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEENFY 240
Query: 63 F-ENNEHKVT--LPLFTC 19
ENN+++ T LP+ C
Sbjct: 241 LVENNQNQDTEELPIDLC 258
[175][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 243 bits (621), Expect = 6e-63
Identities = 120/181 (66%), Positives = 147/181 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV +D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKTIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 E 49
+
Sbjct: 243 K 243
[176][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 243 bits (619), Expect = 1e-62
Identities = 123/195 (63%), Positives = 151/195 (77%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR K E I HEYS I+GI+E VH+ILMNLK IVL+S+ YGI +ASI GP VTAQ+II
Sbjct: 63 TRVKLENIKHEYSAIIGIEESVHDILMNLKXIVLRSDSYGIXEASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNN 242
Query: 51 EHKVTLPLFTCHDLL 7
+ + F LL
Sbjct: 243 KKGSNMLPFPLSHLL 257
[177][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 242 bits (618), Expect = 1e-62
Identities = 122/195 (62%), Positives = 150/195 (76%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T K E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR ASIC GP VTAQ+II
Sbjct: 63 THVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIRGASICIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EAL EASR LI+LFIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNIDGMNN 242
Query: 51 EHKVTLPLFTCHDLL 7
+P F +L
Sbjct: 243 RKGSNMPPFPLSHVL 257
[178][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 241 bits (616), Expect = 2e-62
Identities = 119/180 (66%), Positives = 146/180 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TR E I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 TRVTLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID FIPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNIDGINN 242
[179][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 240 bits (613), Expect = 5e-62
Identities = 118/180 (65%), Positives = 146/180 (81%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T K + I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 THVKLDNIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+A
Sbjct: 123 LPPSVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDL IPFLH EE+ ++ NN
Sbjct: 183 NYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNN 242
[180][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 240 bits (613), Expect = 5e-62
Identities = 129/200 (64%), Positives = 148/200 (74%), Gaps = 9/200 (4%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF KI HEY+T+ GI+E ++EILMNLKEIVL+SNLYG RDASIC +GP VTAQ+II
Sbjct: 63 THAKFAKIPHEYTTMAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRIN----TLKNFQDGSY--NIDAIF 250
LPPS IVDNTQHI +TEPI C+ L+IER RGY I T D Y IDA+F
Sbjct: 123 LPPSTAIVDNTQHIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPIDAVF 182
Query: 249 MPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 70
MPVRN NHSI+SY G+ +EILFLEIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE
Sbjct: 183 MPVRNVNHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEN 240
Query: 69 ---LNFENNEHKVTLPLFTC 19
L N+H LP+ +C
Sbjct: 241 FYLLENNQNQHTEELPIDSC 260
[181][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 229 bits (584), Expect = 1e-58
Identities = 119/198 (60%), Positives = 149/198 (75%), Gaps = 2/198 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF+K++HEYSTI GIQE VH+IL+NLKEIVL+SN Y + A I GP VTAQ+II
Sbjct: 63 TCAKFKKVTHEYSTIAGIQESVHDILINLKEIVLRSNSYETQKAFISILGPKKVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQ+IA +T+ I L I L+IE+D GYRI DG + IDAIFMP+RNA
Sbjct: 123 LPPSVKIIDTTQYIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPIRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL--NFE 58
N+S+HS+ + N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE++++ E
Sbjct: 183 NYSVHSFEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEIINGLE 242
Query: 57 NNEHKVTLPLFTCHDLLA 4
N + F+ LA
Sbjct: 243 NKYESNNMSYFSSFSPLA 260
[182][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 229 bits (583), Expect = 2e-58
Identities = 118/189 (62%), Positives = 146/189 (77%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKFE ++HEYS I+GI+E VH+I +NL+ IVL+S+ YGIR+ASI GP VTAQ+II
Sbjct: 63 THAKFENMTHEYSAIMGIEESVHDISINLRGIVLQSDPYGIREASIYSVGPRDVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQHIA++ E I I QI +DRGYRI + N +DG ++ DA+ MPVRNA
Sbjct: 123 LPPSVRIIDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPVRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+SIHSY NGNE QEILF EIWTNGSL P EALYEASRNLIDLFIPF+ AEE+ ++ +N
Sbjct: 183 NYSIHSYGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNIDGIDN 242
Query: 51 EHKVTLPLF 25
+ + LF
Sbjct: 243 WNGYNMSLF 251
[183][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 228 bits (580), Expect = 4e-58
Identities = 115/184 (62%), Positives = 145/184 (78%), Gaps = 1/184 (0%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T A+ +K++HEYSTIVGIQE H+IL+NLKEIVLKSN Y + A + GP +TAQ+II
Sbjct: 63 TCARSKKVTHEYSTIVGIQESAHDILINLKEIVLKSNSYETQKAFLSILGPKKITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQ+IA +T+PI L I L+I++D GYRI DG ++IDAIFMP+RNA
Sbjct: 123 LPPSVKIIDTTQYIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPIRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLNFEN 55
N+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLH E +E +N
Sbjct: 183 NYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKKETINGLK 242
Query: 54 NEHK 43
E+K
Sbjct: 243 TEYK 246
[184][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 226 bits (576), Expect = 1e-57
Identities = 114/174 (65%), Positives = 140/174 (80%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T A F+K++HEYSTIVGIQE VH+IL+NLKEIVLKSN + A I GP +TAQ+II
Sbjct: 63 TCAIFKKVTHEYSTIVGIQESVHDILINLKEIVLKSNSSETQKAFISILGPKKITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQ+IA +T+PI L I L+IE+D GYRI DG + IDAIFMP+RNA
Sbjct: 123 LPPSVKIIDTTQYIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPIRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 70
N+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLH E+++
Sbjct: 183 NYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKKE 236
[185][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 224 bits (572), Expect = 3e-57
Identities = 114/197 (57%), Positives = 151/197 (76%), Gaps = 1/197 (0%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T A+F++++HEYSTI+GIQE VH++L+NL EIVL+S+ Y + A I GP VTAQ+II
Sbjct: 63 TCAEFKRVTHEYSTILGIQESVHDVLINLGEIVLRSDSYETQKAFISILGPKKVTAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQ+IA VT+ I L I L+IE+D GYRI DG++ +DA+FMP+RN
Sbjct: 123 LPPSVKIIDTTQYIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPIRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE-N 55
N+S+HS+ NGNE QEILFLEIWTNGS+TPKEALYEASR+LI+LFIPFLHAE+++ +
Sbjct: 183 NYSVHSFENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKEFIYGLK 242
Query: 54 NEHKVTLPLFTCHDLLA 4
N ++ + F+ L A
Sbjct: 243 NTYESNMSYFSSPSLSA 259
[186][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 220 bits (560), Expect = 8e-56
Identities = 113/186 (60%), Positives = 143/186 (76%), Gaps = 1/186 (0%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKFEK++HEYSTI GIQE VH+I +N KEIVL+SN + A I GP +TAQ+II
Sbjct: 63 TCAKFEKVTHEYSTIAGIQESVHDISINSKEIVLESNSSETQKAFISILGPKKITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D Q+IA +T+ IQL I L+IE+D GYRI + + IDAIFMP+RNA
Sbjct: 123 LPPSVKIIDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPIRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLNFEN 55
N+S+HS+ N N+ QE+LF+EIWTNGS+TPK+ALYEASR+LIDLFIPFLHAE E +N
Sbjct: 183 NYSVHSFENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREIINELE 242
Query: 54 NEHKVT 37
NE+K++
Sbjct: 243 NEYKLS 248
[187][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 219 bits (558), Expect = 1e-55
Identities = 115/190 (60%), Positives = 138/190 (72%), Gaps = 10/190 (5%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
TRAKF IS+EYS I+GI+E +HEILMNLKEIVL+S+ YGIR+ SI GP VTAQ+I+
Sbjct: 63 TRAKFHNISNEYSVIIGIEESIHEILMNLKEIVLRSDAYGIREGSIHVVGPKKVTAQDIM 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----------YNI 262
LPPSV I+D TQHIAN+ + I L I LQIE+ RGY I N+ + I
Sbjct: 123 LPPSVRIIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVFPI 182
Query: 261 DAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA 82
DA F PV+N N+SIHSY + NE QEILFLEIWTNG L PKEALYEASRNLID F+PFL+A
Sbjct: 183 DAAFAPVQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPFLNA 242
Query: 81 EEEKLNFENN 52
+EE + N+
Sbjct: 243 KEENSDGTNS 252
[188][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 219 bits (558), Expect = 1e-55
Identities = 105/176 (59%), Positives = 139/176 (78%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T KFEK++HEYSTI+GIQE VH+IL+NLKEIVLKSN Y ++ASI GP VTA++I+
Sbjct: 63 TYVKFEKVTHEYSTIMGIQESVHDILINLKEIVLKSNSYKTQEASISILGPKRVTAEDIV 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LP SV ++D TQHIA +T+ + I L I +DRGYRI ++DG++ ++A F P+RNA
Sbjct: 123 LPSSVEVIDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 64
N+S+HS+ N EKQEILF+E+WTNGSLTPKEAL EAS++LI+LFIP LH ++E+ N
Sbjct: 183 NYSVHSFENEKEKQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKEREN 238
[189][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 218 bits (556), Expect = 2e-55
Identities = 111/183 (60%), Positives = 142/183 (77%), Gaps = 2/183 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKS--NLYGIRDASICFKGPGYVTAQN 418
TRAK EK++HEYSTI+GIQE V +IL+NLKEIVLKS N + A + GP VTA++
Sbjct: 64 TRAKSEKVTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVTARD 123
Query: 417 IILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVR 238
II PPSV ++D TQ+IA +T+ I L I L+IE+D GYR DG +++DA+F P+R
Sbjct: 124 IIFPPSVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIR 183
Query: 237 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 58
NAN+S+HS+ N NE QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE+E++ +
Sbjct: 184 NANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHD 243
Query: 57 NNE 49
NE
Sbjct: 244 KNE 246
[190][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 216 bits (549), Expect = 1e-54
Identities = 103/181 (56%), Positives = 141/181 (77%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AK + + HEYSTI+GI+E +++IL+N KEIVL+S+ Y + A I GP +TA++I+
Sbjct: 63 TYAKSKNVIHEYSTIIGIEESINDILINFKEIVLRSDSYETQKAYISITGPKDITAEDIL 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV +D++QHIA +T+ I L I ++I++DRGYRI K Q G + IDA+FMP+R A
Sbjct: 123 LPPSVQAIDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPIRKA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+S+HS+ N + QEILF+EIWT+GSLTPKEALYEASRNLIDLF+PFLH EEE++ + +
Sbjct: 183 NYSVHSFGNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEIISDRD 242
Query: 51 E 49
E
Sbjct: 243 E 243
[191][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 214 bits (545), Expect = 4e-54
Identities = 108/177 (61%), Positives = 139/177 (78%), Gaps = 2/177 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKS--NLYGIRDASICFKGPGYVTAQN 418
TRAK EK++HEYSTI+GIQE V +IL+NLKEIVLKS N + A + GP VTA++
Sbjct: 64 TRAKSEKVTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVTARD 123
Query: 417 IILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVR 238
I+ PPSV ++D TQ+IA +T+ I L I L+IE+D GYR DG +++DA+F P+R
Sbjct: 124 IVFPPSVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIR 183
Query: 237 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 67
NAN+S+HS+ N NE QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE+E++
Sbjct: 184 NANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
[192][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 204 bits (518), Expect = 6e-51
Identities = 107/183 (58%), Positives = 137/183 (74%), Gaps = 2/183 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF+ + HEYST+VGI+E +H+IL+NLKEIVL+S+ Y + ASI GP VTA +I+
Sbjct: 63 TYAKFKNVVHEYSTLVGIKESIHDILINLKEIVLQSDSYETQKASISILGPRDVTAGDIL 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LP SV I+D +QHIA +T I L + L+IERD GYR LK Q G + IDA+F P+RNA
Sbjct: 123 LPTSVKIIDASQHIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPIRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK--LNFE 58
N+SIHS+ + N+ +EILFLE+WTNGSLTP AL EASR+LIDLFI FL+ E+E+ E
Sbjct: 183 NYSIHSFESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIKEIE 242
Query: 57 NNE 49
NNE
Sbjct: 243 NNE 245
[193][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 204 bits (518), Expect = 6e-51
Identities = 98/191 (51%), Positives = 141/191 (73%), Gaps = 1/191 (0%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T A+FE ++HEYST+ GIQE +H+IL+NLKEIVL+S+ G + A + GP VTA +I
Sbjct: 63 TSARFEGVAHEYSTVAGIQETIHDILVNLKEIVLRSDSDGNQKAILSVTGPKRVTAGDIS 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV ++D++Q+I +T+PI + I L IE D GYRI +L ++DG + +DA+FMPVRN
Sbjct: 123 LPPSVKVIDDSQYIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFEN 55
N+S+H + +G E +EILF+E+WTNGSLTP EA+ +AS++ IDL PFLH + E + +FE+
Sbjct: 183 NYSVHPFGSGKEMREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHEDIPDFES 242
Query: 54 NEHKVTLPLFT 22
N +L F+
Sbjct: 243 NRDSSSLMKFS 253
[194][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 201 bits (511), Expect = 4e-50
Identities = 99/177 (55%), Positives = 136/177 (76%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AK +K+ HEYSTI+G+QE +H+IL+NLKEIVLKS + + A I GP +TAQ+I
Sbjct: 63 TYAKIKKVKHEYSTIIGLQESIHDILINLKEIVLKSESFEPQKAYISVLGPKKITAQDIK 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
P + I+ Q+IA + + I L I L IE+DRGYRI L+ +Q+G + +DA+FMP+RNA
Sbjct: 123 GPSCIKIMIIAQYIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNA 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
N+S+HS+ + + +EILFLEIWT+GSLTPKEALYEASRNLIDLFIP +++E+++ NF
Sbjct: 183 NYSVHSFESEKKIKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNF 239
[195][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 193 bits (491), Expect = 8e-48
Identities = 106/200 (53%), Positives = 136/200 (68%), Gaps = 3/200 (1%)
Frame = -2
Query: 591 TRAKFEKIS-HEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 415
T AK EK + H+YST+ GI+E VH+IL+NLKEIVLKS LYGI ASIC GP VTAQ+I
Sbjct: 63 TYAKIEKTTVHDYSTMSGIKESVHDILLNLKEIVLKSELYGIHKASICTVGPRNVTAQDI 122
Query: 414 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFMPV 241
ILP S+ I+D TQHIA++T+ + + L IER++GY I + + ++G + IDA MPV
Sbjct: 123 ILPSSIKIIDGTQHIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPCMPV 182
Query: 240 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
RN N SIHSY + N+ +E+L EIWTNG LTP+EA YEA LIDL +P LH EE+
Sbjct: 183 RNVNFSIHSYKSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED---M 239
Query: 60 ENNEHKVTLPLFTCHDLLAK 1
+ LP+ T D L K
Sbjct: 240 NGAKDFFALPILTRMDKLGK 259
[196][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 189 bits (481), Expect = 1e-46
Identities = 95/191 (49%), Positives = 133/191 (69%), Gaps = 1/191 (0%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKFE + HEYSTI GIQE +H+I +NLKE V +S+ ++A + GP VTA +
Sbjct: 63 TCAKFEGVIHEYSTITGIQETIHDISVNLKETVPRSDSNDSKEAFLSVTGPKRVTAGDTS 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D++Q+I +T+PI + I +IE+D GYRI ++DG + +DA+ MPVRN
Sbjct: 123 LPPSVKIIDDSQYIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRNV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFEN 55
N+S+H + +G E +EI F+EIWTNGS TP EAL EAS+NLIDL IPFLH + E + +FE+
Sbjct: 183 NYSVHPFGSGREMREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHEDVPHFED 242
Query: 54 NEHKVTLPLFT 22
+ L + +
Sbjct: 243 EQDSSDLTILS 253
[197][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 189 bits (480), Expect = 1e-46
Identities = 97/184 (52%), Positives = 134/184 (72%), Gaps = 1/184 (0%)
Frame = -2
Query: 591 TRAKFEK-ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNI 415
T A+F+K I HEYS+I+GI+E VH+ILMNLK+IVL+S LYGI +ASIC GP VTAQ+I
Sbjct: 63 TYARFQKNILHEYSSIIGIKESVHDILMNLKQIVLRSELYGIHEASICTVGPKNVTAQDI 122
Query: 414 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRN 235
ILP S+ I+D+TQHIA++T+ I + L+IE+ + Y I +K +D + ID + +PV+N
Sbjct: 123 ILPSSIQIIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLPVQN 182
Query: 234 ANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 55
N SIHSY + + QE+L EIWTNG LTP+E +YEA +L+DL IP L E+ N +N
Sbjct: 183 VNFSIHSYKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQ---NIKN 239
Query: 54 NEHK 43
++ K
Sbjct: 240 SQKK 243
[198][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 189 bits (480), Expect = 1e-46
Identities = 94/183 (51%), Positives = 135/183 (73%), Gaps = 2/183 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKFE I+HEYST+ GIQE VH+IL+N KEIVLKS + A I GP VTAQ+I
Sbjct: 66 TCAKFENITHEYSTMDGIQESVHDILINSKEIVLKSKSSEAQKAFISIVGPRRVTAQDIE 125
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LP SV ++D QHIA +T+ ++L I L+IE+D GYR + ++DG++ +DA+F P+R+
Sbjct: 126 LPTSVEVIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSV 185
Query: 231 NHSIHSYVNGNEK--QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 58
N+SIH + + ++ +E+L EIW+NGS+TP+EA+YEASR+ I+LF+PFL AE+EK +F+
Sbjct: 186 NYSIHCFESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKEKEDFK 245
Query: 57 NNE 49
+
Sbjct: 246 GED 248
[199][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 187 bits (474), Expect = 7e-46
Identities = 93/181 (51%), Positives = 129/181 (71%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T A I HEYS I GI+E +H+IL+NLKEI+L+S+ + A IC GP VTA++I
Sbjct: 64 TSATIRGIKHEYSAINGIRESIHDILINLKEIILRSDSPEPQKAYICVSGPSEVTARDIQ 123
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
+ ++DNTQ++A +T I L I L IE+DRGYR+ + +++G + IDA+FMP+RNA
Sbjct: 124 GSSLIHVIDNTQYVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRNA 183
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 52
N+S+HS+ + + +EIL LEIWTNGSLTP++ALYEASRNLIDLFIP ++ E+ N
Sbjct: 184 NYSVHSFGSREKTKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMNPGGEEKNSGTK 243
Query: 51 E 49
E
Sbjct: 244 E 244
[200][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 183 bits (464), Expect = 1e-44
Identities = 96/188 (51%), Positives = 129/188 (68%), Gaps = 2/188 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLY-GIRDASICFKGPGYVTAQNI 415
T A+F + HEYSTI G+QE +H++L+NLKEIVL+ + I++A + GP VTA ++
Sbjct: 63 TCARFCGVVHEYSTITGLQETIHDVLVNLKEIVLRGDSKEDIQEAFLSVTGPKEVTAGDL 122
Query: 414 ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRN 235
LPP V +DN+Q+IA +T+PI L I L+IE+D GYRI L G + IDA+FMPVRN
Sbjct: 123 SLPPGVEAIDNSQYIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRN 182
Query: 234 ANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FE 58
N+SIH + +G QEILF+EIWTNGSLTP EAL +AS L+DL FL+ ++ FE
Sbjct: 183 VNYSIHLFGSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFE 242
Query: 57 NNEHKVTL 34
N E + L
Sbjct: 243 NGEDSLDL 250
[201][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 173 bits (439), Expect = 8e-42
Identities = 90/183 (49%), Positives = 130/183 (71%), Gaps = 2/183 (1%)
Frame = -2
Query: 585 AKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILP 406
A F+ + EY+ + G++E +IL+NLKE+V++S+ + A I GPG VTA +I+LP
Sbjct: 177 ATFKNVKSEYAAMKGVEETPMDILVNLKELVIRSDSDEPQKAIISAIGPGPVTAGDIVLP 236
Query: 405 PSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANH 226
PS+ + D TQHIA +T+ + L I L +E+ GYR+ DG + ID++FMPVRNAN+
Sbjct: 237 PSLEVTDPTQHIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANY 296
Query: 225 SIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFENN 52
S+HSY + + QEILFLEIWTNGS+TP+EAL+EA+R LIDLF+PFLH +++++ N
Sbjct: 297 SVHSYESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKKEVTNSATK 356
Query: 51 EHK 43
HK
Sbjct: 357 MHK 359
[202][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 167 bits (423), Expect = 6e-40
Identities = 89/167 (53%), Positives = 119/167 (71%), Gaps = 3/167 (1%)
Frame = -2
Query: 576 EKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGI-RDASICFKGPGYVTAQNIILPPS 400
E+I+HEY+ I G++E VH+ILMNLKEIVLK+N + ++A I GP VTAQ+I+LPPS
Sbjct: 68 ERINHEYTAIAGVRESVHDILMNLKEIVLKTNPFSAAQEAHIPIVGPRKVTAQDIVLPPS 127
Query: 399 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 220
V +D TQHIA +T I IGL++ER G+R + +Q GS DA+FMP+R+AN+SI
Sbjct: 128 VGTMDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFMPIRHANYSI 187
Query: 219 HSYVN--GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH 85
H + G +E+L LE T+GS TP+EA+YEASRNL +LF PF H
Sbjct: 188 HRLGSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[203][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 155 bits (391), Expect = 3e-36
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T AKF+K++HEYSTI+GIQE VH+IL+N KEIVLKSN Y + A I GP +TAQ+II
Sbjct: 63 TCAKFKKVTHEYSTILGIQESVHDILINSKEIVLKSNSYETQKAFISILGPKKITAQDII 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LPPSV I+D TQ+IA +T+ I L I +IE+D GYRI K DG + +DA+FMP+RNA
Sbjct: 123 LPPSVKIIDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSKKSTDGLFFVDAVFMPIRNA 182
Query: 231 NHSIHSYVNGNE 196
N+SIHS+ N N+
Sbjct: 183 NYSIHSFENKNK 194
[204][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 154 bits (390), Expect = 4e-36
Identities = 78/188 (41%), Positives = 117/188 (62%), Gaps = 7/188 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T K + I HEY T+ G++E + +IL+NLKEIV K + I KGP +TA +I
Sbjct: 60 TSVKIDNIKHEYCTLTGVRESIQDILLNLKEIVFKGVCDKTQKGFIFVKGPKKITASDIQ 119
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
+ P + I+D+ Q IA++TEPI + L IE+ G+R+ S++IDAIFMP+RN
Sbjct: 120 IEPCIEILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIRNV 179
Query: 231 NHSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL---- 67
N+SIH G+ K E+L LEIWTNGS+TPKEA ++AS ++++F+ ++ + ++
Sbjct: 180 NYSIHPVEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFLSLSNSSDNQIQEKS 239
Query: 66 --NFENNE 49
NFE E
Sbjct: 240 TKNFEEKE 247
[205][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 153 bits (387), Expect = 9e-36
Identities = 83/176 (47%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
Frame = -2
Query: 567 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 388
SHEYST+ GI+E +H+IL+NLK+IV KS+ ++ + F GPG VTAQ+I LPP V +V
Sbjct: 68 SHEYSTLKGIRESIHDILLNLKDIVFKSDTLERQEGILLFNGPGIVTAQHIKLPPVVQVV 127
Query: 387 DNTQHIANVTEPIQLCIGLQIERDRG-YRINTLKNFQDGSYNIDAIFMPVRNANHSIHSY 211
DNTQ+IA + P + I + +E + +NT+ + G + +DA PVRN N+SIHS
Sbjct: 128 DNTQYIARLEMPTSIEIHITLENTKTCTSLNTMPTTK-GRFILDAALKPVRNMNYSIHSL 186
Query: 210 VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHK 43
G+ +QE+L LE+WTNGSLTP+E + +AS+NL DL P L E + N HK
Sbjct: 187 GEGDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKV-ERYFQAKQNIHK 241
[206][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 148 bits (374), Expect = 3e-34
Identities = 70/175 (40%), Positives = 114/175 (65%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T K + HEYS++ G+QE VH+IL+NLK+I+L S+ GI + + GP V A ++
Sbjct: 63 TSVKIKNAIHEYSSLSGVQESVHDILINLKKIILSSSFSGIFEGFLSVVGPKTVLASDLN 122
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNA 232
LP + IV+ Q+IA V +PI + + I++ +GY + + + G + +D +F+P+R+
Sbjct: 123 LPSFIKIVNPDQYIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSV 182
Query: 231 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 67
N+SIHS+ + +E L +E+WTNGS+ PKEA+ EAS NL++LF P + E ++L
Sbjct: 183 NYSIHSFEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQEYQQL 237
[207][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 148 bits (373), Expect = 4e-34
Identities = 75/164 (45%), Positives = 113/164 (68%)
Frame = -2
Query: 570 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 391
I HEY + GIQE V +IL+N++++ + SN + + A I GP V A +I+ PPS+V+
Sbjct: 171 IVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVV 230
Query: 390 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSY 211
D +Q+IA VT I + +++E+D GYRI +G + ID++FMPV AN+S+HS+
Sbjct: 231 PDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSF 290
Query: 210 VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 79
+ +EILFLEI+TNGS++P+EAL EA+R+LIDL +P L +E
Sbjct: 291 EVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334
[208][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 148 bits (373), Expect = 4e-34
Identities = 75/164 (45%), Positives = 113/164 (68%)
Frame = -2
Query: 570 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 391
I HEY + GIQE V +IL+N++++ + SN + + A I GP V A +I+ PPS+V+
Sbjct: 258 IVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVV 317
Query: 390 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSY 211
D +Q+IA VT I + +++E+D GYRI +G + ID++FMPV AN+S+HS+
Sbjct: 318 PDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSF 377
Query: 210 VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 79
+ +EILFLEI+TNGS++P+EAL EA+R+LIDL +P L +E
Sbjct: 378 EVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421
[209][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 147 bits (372), Expect = 5e-34
Identities = 77/171 (45%), Positives = 110/171 (64%)
Frame = -2
Query: 585 AKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILP 406
AK +HEYST+ GIQE +H+IL+NLK++++K+ + + I GP VTA +I L
Sbjct: 67 AKIYGAAHEYSTLEGIQESIHDILLNLKQVIIKNKICEFQKCLISIIGPKKVTAADIELS 126
Query: 405 PSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANH 226
++ I + HIA +T+PI+ + L I + RGY I + QDG + +DA+F PVRN N
Sbjct: 127 QNITISNPYHHIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNF 186
Query: 225 SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 73
SIH N E+QE L LEIWTNG++TP +AL + S NLI LF+P E++
Sbjct: 187 SIH---NLAEQQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDD 234
[210][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 145 bits (365), Expect = 3e-33
Identities = 86/197 (43%), Positives = 125/197 (63%), Gaps = 9/197 (4%)
Frame = -2
Query: 591 TRAKF--EKISHEYS--TIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTA 424
T KF +++ H +S TI+GI+E VH+I+MNL+EIV + L+GI A I GP VTA
Sbjct: 63 THVKFFNKRVKHLFSSSTILGIEESVHDIIMNLREIVFRCELHGIHKAYIYTVGPKNVTA 122
Query: 423 QNIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRG---YRINTLKNFQDGSYNIDAI 253
Q+IILPP + IVD TQHIA++T+PI L + L+IE++ G I+ + + +
Sbjct: 123 QDIILPPFIQIVDGTQHIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPTEIF 182
Query: 252 FMPVRNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 79
+MPVR+ ++++ Y + + +IL E+WTNG LTPKEALYEA LIDL IP L +
Sbjct: 183 YMPVRSVTYNVYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLL--D 240
Query: 78 EEKLNFENNEHKVTLPL 28
L+ E + K ++PL
Sbjct: 241 VPLLHVEGSGVKESIPL 257
[211][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 125 bits (315), Expect = 2e-27
Identities = 69/170 (40%), Positives = 106/170 (62%), Gaps = 4/170 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE+ST+ G++E V EIL+N+KE+VL+SN + + +GPG VTA+ +
Sbjct: 72 TAVRIAGVTHEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQGPGEVTAEKLQ 131
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYR---INTLKNFQDGSYNIDAIFMPV 241
LP V +++ HIA + E L + I R RGYR + K+ ID++FMPV
Sbjct: 132 LPSEVEVINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDFLQIDSVFMPV 191
Query: 240 RNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
R N+++ + V + +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 192 RKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSP 241
[212][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 124 bits (311), Expect = 6e-27
Identities = 77/174 (44%), Positives = 103/174 (59%), Gaps = 12/174 (6%)
Frame = -2
Query: 564 HEYSTIVGIQEPVHEILMNLKEIVLKSNL--------YGIRDASICFKGPGYVTAQNIIL 409
HEYST+ G++E V EIL+NLK+IV+K + ASI +GPG VTA++I
Sbjct: 72 HEYSTLDGVRESVDEILLNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGVVTAEHIKF 131
Query: 408 PPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNAN 229
P S++ VD Q IA + QLCI L I + ++ K G + IDA F PV+ AN
Sbjct: 132 PSSILAVDPDQSIATLLNETQLCIELFIRQGIAKQLTRTKKNHQGFF-IDANFTPVQKAN 190
Query: 228 HSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF----IPFLHAE 79
SIHS + Q++L LEIWTN +LTP EALY+A +L++LF P LH E
Sbjct: 191 FSIHSVGDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[213][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 123 bits (309), Expect = 1e-26
Identities = 71/163 (43%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Frame = -2
Query: 576 EKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSV 397
E+I+HEY I G++E VHE MNLKEI L ++ ++A I GPG V A++ + P S+
Sbjct: 67 ERINHEYPAIAGVRESVHETSMNLKEIALTAHPSAAQEAHIPIVGPGKVAARDTVPPSSI 126
Query: 396 VIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIH 217
I+ QH A VT I+ G ++E GYR + +Q GS DA+ MP+RNAN+SIH
Sbjct: 127 GIIYPAQHAATVTRKIRSSTGSRVEGGCGYRRRNMVEYQKGSPPPDAVSMPIRNANYSIH 186
Query: 216 SYV--NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
+G +E+ E T+GS TP EA YEASR+ +LF P
Sbjct: 187 RLESHSGGIMKEMPPPEARTDGSPTPGEATYEASRDSANLFSP 229
[214][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 123 bits (308), Expect = 1e-26
Identities = 71/185 (38%), Positives = 109/185 (58%), Gaps = 4/185 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E V EIL+NLKEIVL S + + +GP VTA +
Sbjct: 54 TAVRIAGVNHEFATIPGVREDVLEILLNLKEIVLNSYSNQRQIGRLLVQGPATVTAGHFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIFMPV 241
LP V +VD Q+IA ++ L + Q+E+ GYR N + IDA+FMPV
Sbjct: 114 LPSEVEVVDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPV 173
Query: 240 RNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 64
R N+++ + V G+ +++ L L+IWTNGSLTP+EAL +A+ L+DLF+P E +
Sbjct: 174 RKVNYTVEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLKDITLESIK 233
Query: 63 FENNE 49
+ +
Sbjct: 234 TDQTD 238
[215][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 121 bits (304), Expect = 4e-26
Identities = 71/184 (38%), Positives = 110/184 (59%), Gaps = 3/184 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE+ +I G++E V E+L+NLK IVLKS + + +G VT N
Sbjct: 54 TAVRIAGVNHEFCSIPGVKEDVLELLLNLKNIVLKSYTNEPQIGRLKIQGACKVTTANFE 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDG--SYNIDAIFMPVR 238
LP V I+ TQ++A V E L + +IE+ RGY+I K ++ IDAIFMPVR
Sbjct: 114 LPSEVEIIHGTQYVATVAENAILEMEFKIEKGRGYKIIDKKQTENSIDFLPIDAIFMPVR 173
Query: 237 NANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
N+ + ++ +E +E L LEIW NGS+TP++++ +A+ L++LF PF +K+NF
Sbjct: 174 KVNYMVEEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPF-----KKINF 228
Query: 60 ENNE 49
EN +
Sbjct: 229 ENTD 232
[216][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 120 bits (300), Expect = 1e-25
Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 6/172 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + +SHE++T+ G++E V EI+M +KE++LKS + + GP +TA +
Sbjct: 54 TAVRIAGVSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFM 247
LP V ++D TQ++A + E +L + +IER +GYR T++ ++ + ID+IFM
Sbjct: 114 LPSEVEVIDPTQYVATIAEGGKLEMEFRIERGKGYR--TVERGREEATSLDFLQIDSIFM 171
Query: 246 PVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
PVR N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 172 PVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[217][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 120 bits (300), Expect = 1e-25
Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 6/172 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + +SHE++T+ G++E V EI+M +KE++LKS + + GP +TA +
Sbjct: 54 TAVRIAGVSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFM 247
LP V ++D TQ++A + E +L + +IER +GYR T++ ++ + ID+IFM
Sbjct: 114 LPSEVEVIDPTQYVATIAEGGKLEMEFRIERGKGYR--TVERGREEATSLDFLQIDSIFM 171
Query: 246 PVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
PVR N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 172 PVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[218][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 119 bits (299), Expect = 1e-25
Identities = 68/187 (36%), Positives = 108/187 (57%), Gaps = 6/187 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++T+ G++E V E+++N+KEI+LKS + + GP V A
Sbjct: 54 TALRIAGVNHEFATVQGVREDVMELMLNMKEIILKSYTNQTQIGRLVATGPATVVAAQFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPV 241
LP V IVD Q++A + E +L + ++E+ +GYR + S + ID+IFMPV
Sbjct: 114 LPSEVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPV 173
Query: 240 RNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF--LHAEEEK 70
N+S+ + ++ L LEIWTNGS+ PKEAL +A+ L++LF P L+A E
Sbjct: 174 TKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLKDLNALESS 233
Query: 69 LNFENNE 49
NF++ E
Sbjct: 234 SNFDDQE 240
[219][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 119 bits (298), Expect = 2e-25
Identities = 67/175 (38%), Positives = 105/175 (60%), Gaps = 4/175 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI GI+E V EIL+N+KE+VLKS G + GP V +
Sbjct: 54 TAVRIAGVNHEFATIAGIREDVLEILLNMKEVVLKSYTPGPHIGRVMITGPSTVRSAQFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPV 241
LP V VD Q+IA + + +L + +IER +GYR + S + +DA+FMPV
Sbjct: 114 LPSDVEFVDPGQYIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVFMPV 173
Query: 240 RNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 79
N+S+ + V+G+ +++ L L++WTNGS++P+EAL +A+ L+DLF P E
Sbjct: 174 TKVNYSVEDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[220][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 119 bits (298), Expect = 2e-25
Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 6/178 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E V E+++N+KEI LKS + + GP VTA
Sbjct: 54 TALRIAGVNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAGQFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFM 247
LP V IVD +Q++A + E +L + +IE+ +GYR ++ +D S ID++FM
Sbjct: 114 LPSEVEIVDPSQYVATLAEGSKLEMEFRIEKGKGYR--AIERGKDDSTSLDFLQIDSVFM 171
Query: 246 PVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 76
PV N+S+ V+G ++ L +EIWTNGS+ PKEAL EA+ ++DLF P E
Sbjct: 172 PVTKVNYSVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[221][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 119 bits (297), Expect = 2e-25
Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 4/170 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE+ST+ G++E V EIL+N+KE+VL+S+ + + +GPG VTA+ +
Sbjct: 74 TAVRIAGVTHEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQ 133
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYR---INTLKNFQDGSYNIDAIFMPV 241
LP V +++ HIA + E L + I R GYR + K ID++FMPV
Sbjct: 134 LPSDVEVINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDFLQIDSVFMPV 193
Query: 240 RNANHSIHSYVNGN-EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
R N+++ + G +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 194 RKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAP 243
[222][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 119 bits (297), Expect = 2e-25
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + + E+STI GI+E + EIL+NLK IVLKS ++ + KGP VTA I
Sbjct: 54 TGVRIAGVRDEFSTIPGIREDILEILLNLKGIVLKSKTNDLKFGRLKIKGPAVVTANCIQ 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFMPVR 238
LP V IV+ +IA +T L I +IE GY++ T IDAIFMPV+
Sbjct: 114 LPSEVEIVNPNHYIATITTSNVLEIEFKIESGTGYKLAGQTFCKKSQDYLQIDAIFMPVQ 173
Query: 237 NANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
+ I + Y N N+ E LFL+IWTNGS++P+EA+ ASR +I F L E KL
Sbjct: 174 KVDFKIENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLL---ENKLPQ 230
Query: 60 ENNE 49
E E
Sbjct: 231 ETKE 234
[223][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 118 bits (296), Expect = 3e-25
Identities = 63/171 (36%), Positives = 105/171 (61%), Gaps = 5/171 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + + +SHE++T+ G++E V EILM +KE++LK+ + + GP VTA +
Sbjct: 54 TAVRIDGVSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVNGPVTVTAAHFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFM 247
LP V ++D TQ++A + + +L + +IER +GYR T++ ++ + ID++FM
Sbjct: 114 LPSEVEVIDPTQYVATIADGGKLEMEFRIERGKGYR--TVERGREEATSLDFLQIDSVFM 171
Query: 246 PVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
PVR N+S+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 172 PVRKVNYSVEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 222
[224][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 118 bits (296), Expect = 3e-25
Identities = 70/171 (40%), Positives = 108/171 (63%), Gaps = 5/171 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++T+ GI+E V +IL+N+KE+VL+S I+ + +GP VTA ++
Sbjct: 54 TAVRITGVNHEFATMKGIREDVLDILLNMKELVLRSYTSDIQIGRLAVQGPKRVTAADLE 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMP 244
LP V +V +IA + E QL + QIER +GYR + +DG+ +IDAIFMP
Sbjct: 114 LPTEVQVVHPRHYIATLAEDGQLEMEFQIERGKGYRA-IERGSEDGAAIDYLSIDAIFMP 172
Query: 243 VRNANHSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
VR N ++ S + N +Q+ L LEIWT+GSL+P+EAL +A++ L+D P
Sbjct: 173 VRKVNWTVESERSAANVEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRP 223
[225][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 118 bits (295), Expect = 4e-25
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 6/172 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E V EI++N+KEIVLKS + + G VTA N
Sbjct: 56 TAIRIAGVNHEFATIPGVREDVLEIMLNMKEIVLKSYSDQAQIGRLVATSAGTVTAANFE 115
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMP 244
LP V +VD TQ++A +TE +L + +IE GY+ + DG+ IDA+FMP
Sbjct: 116 LPSEVEVVDPTQYVATLTEGSKLEMEFRIETGTGYK-GVERGKDDGTSLDFLEIDAVFMP 174
Query: 243 VRNANHSIHSYVNGN--EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
V N+ + + G E Q+ L LEIWTNGS PKEAL EA+ ++DLF P
Sbjct: 175 VTKVNYIVED-IRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[226][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 118 bits (295), Expect = 4e-25
Identities = 72/187 (38%), Positives = 108/187 (57%), Gaps = 6/187 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + +SHE+STI GI+E V EIL+NLKEIV L + +GP VTA++
Sbjct: 54 TAVRIAGVSHEFSTINGIREDVLEILLNLKEIVFSGQLQESTIGRLTVQGPAIVTARSFE 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI----NTLKNFQDGSYNIDAIFMP 244
LPP + ++D Q+IA + L + +IE GY+I N+ ++F+ +D++FMP
Sbjct: 114 LPPEIKLIDPEQYIATICGNNTLEMEFKIEVGSGYKIVEKDNSTEHFE--FLQVDSVFMP 171
Query: 243 VRNANHSI-HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EEK 70
V+ N I + N E L L+IWTNGS++ KEA+ A+ NLI+LF P + E +
Sbjct: 172 VKKVNFRIEETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDGESE 231
Query: 69 LNFENNE 49
++E NE
Sbjct: 232 TDYETNE 238
[227][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 117 bits (294), Expect = 5e-25
Identities = 68/170 (40%), Positives = 104/170 (61%), Gaps = 6/170 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E V EI++NLKE VLKS+ Y + + +GP VT +
Sbjct: 54 TAVRIAGVNHEFATIEGVREDVLEIMLNLKEAVLKSHTYQKQIGRLLVQGPATVTVGHFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFM 247
LP V +V+ Q+IA ++ L + QIE+ GYR + +D S IDAIFM
Sbjct: 114 LPSEVEVVNKNQYIATLSPGATLEMECQIEKGTGYR--AVDRHRDDSAALDFLQIDAIFM 171
Query: 246 PVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLF 100
PVR N+++ +G +++ L LEIWT+GSLTP+EA+ +A+ L+DLF
Sbjct: 172 PVRKVNYTVEDARDGGSLEKDRLTLEIWTSGSLTPQEAISQAAAILVDLF 221
[228][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 117 bits (294), Expect = 5e-25
Identities = 68/187 (36%), Positives = 107/187 (57%), Gaps = 6/187 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++T+ G++E V E+++N+KEI LKS + + GP V A
Sbjct: 54 TALRIAGVNHEFATVEGVREDVMELMLNMKEITLKSYTNQTQIGRLVATGPATVVAAQFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPV 241
LP V IVD Q++A + E +L + ++E+ +GYR + S + ID+IFMPV
Sbjct: 114 LPSEVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPV 173
Query: 240 RNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF--LHAEEEK 70
N+S+ + ++ L LEIWTNGS+ PKEAL +A+ L++LF P L+A E
Sbjct: 174 TKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLKDLNALESS 233
Query: 69 LNFENNE 49
NF++ E
Sbjct: 234 GNFDDQE 240
[229][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 117 bits (293), Expect = 7e-25
Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 4/176 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI+G++E V EI++N+KE+VLKS + + GPG VTA
Sbjct: 54 TAIRIAGVNHEFATILGVREDVLEIMLNMKELVLKSYTDQPQIGRLTAIGPGTVTAAQFE 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPV 241
+P V ++D Q+IA + E +L + ++ER GYR+ ++ S + ID++FMPV
Sbjct: 114 VPSEVEVIDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPV 173
Query: 240 RNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 76
N+++ +G ++ L L+IWTNGS+ P+EAL EAS + +LFIP E
Sbjct: 174 TKVNYTVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229
[230][TOP]
>UniRef100_Q6B8X4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gracilaria
tenuistipitata var. liui RepID=RPOA_GRATL
Length = 314
Score = 117 bits (292), Expect = 9e-25
Identities = 68/180 (37%), Positives = 108/180 (60%), Gaps = 4/180 (2%)
Frame = -2
Query: 570 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 391
I+HE+STI G++E V EIL+NLK++VLKS+ + I +GP +T +PP ++I
Sbjct: 61 INHEFSTITGVREDVLEILLNLKKVVLKSHSDTPQIGRIRLQGPAIITTGLFEVPPEILI 120
Query: 390 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSI 220
+D Q+IA + + +IE+ GY++ K F S + IDA+FMPV N+++
Sbjct: 121 IDPQQYIATICNNTIFEMEFRIEKGSGYKL-VNKGFDKKSIDFLQIDAVFMPVTKFNYTV 179
Query: 219 -HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHK 43
++ QE LFLE+WTNGSL+P+EA+ E ++ L LF P + + N +NE++
Sbjct: 180 EEKKISPILIQEKLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLTNLNFQNANNTDNEYE 239
[231][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 117 bits (292), Expect = 9e-25
Identities = 60/169 (35%), Positives = 101/169 (59%), Gaps = 3/169 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE+STI G++E V +IL+NLKEIVLK+ + + +GP V A+++
Sbjct: 59 TSVQIPGVNHEFSTIHGVREAVLDILLNLKEIVLKTQSQETQRGHLSVQGPSTVLARDLQ 118
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIFMPV 241
LP S+ +VD Q+IA ++ + L + +E +GY++ K FQ IDA+FMPV
Sbjct: 119 LPSSIELVDPDQYIATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFMPV 178
Query: 240 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
N+++ G+ QE + +E+WTNGS+ ++A+ + +I+LF P
Sbjct: 179 TKVNYTVEENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSP 227
[232][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 116 bits (290), Expect = 2e-24
Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 5/186 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E EI++N+KEI+LKS + + + GPG VTA
Sbjct: 54 TALRIGGVNHEFATIPGVREDALEIILNMKEIILKSYTHQPQIGRLTATGPGQVTAAQFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMP 244
LP V +VD TQ+IA + + +L + +IE+ + YR +N + + IDA+FMP
Sbjct: 114 LPSEVEVVDPTQYIATLADGAKLEMEFRIEKGKSYRA-VQRNRDEATALDFLQIDAVFMP 172
Query: 243 VRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 67
V N+S+ S + G+ ++ L LEIWTNGS+ P+EAL +A+ ++LF P E +
Sbjct: 173 VTKVNYSVDSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNPLKDLTLEAI 232
Query: 66 NFENNE 49
E E
Sbjct: 233 QDELQE 238
[233][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 115 bits (289), Expect = 2e-24
Identities = 63/178 (35%), Positives = 106/178 (59%), Gaps = 6/178 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E V E+++N+KEI LKS + + GP VTA
Sbjct: 54 TALRIAGVNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAAQFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFM 247
+P + +VD +Q++A +++ +L + ++E+ +GYR ++ +D + ID++FM
Sbjct: 114 VPSEIEVVDPSQYVATLSDGSKLEMEFRVEKGKGYR--AIERGKDDTTSLDFLQIDSVFM 171
Query: 246 PVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 76
PV N+S+ V+G ++ L LEIWTNGS+ PKEAL EA+ ++DLF P E
Sbjct: 172 PVTKVNYSVEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNE 229
[234][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 115 bits (288), Expect = 3e-24
Identities = 65/172 (37%), Positives = 106/172 (61%), Gaps = 6/172 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + +SHE++T+ G++E V EILM +KE++LK+ + + GP +TA +
Sbjct: 54 TAVRIAGVSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVSGPTTITAAHFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFM 247
LP V ++D TQ++A + E +L + +IE+ +GYR T++ ++ + ID+IFM
Sbjct: 114 LPSEVEVIDPTQYVATIAEGGKLEMEFRIEKGKGYR--TVERGREEATSLDFLQIDSIFM 171
Query: 246 PVRNANHSI-HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
PVR N+S+ S G ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 172 PVRKVNYSVEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[235][TOP]
>UniRef100_B4WHD8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7335 RepID=B4WHD8_9SYNE
Length = 315
Score = 115 bits (288), Expect = 3e-24
Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 4/170 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + SHE+STI G++E V +IL+N+KE VLKS + + +GP VTA N
Sbjct: 54 TSVRIAGASHEFSTIPGVREDVLDILLNMKETVLKSYSAQPQIGRLVVQGPAKVTAANFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS---YNIDAIFMPV 241
LP V ++ ++IA+V +L + +IER +GY+ + G IDA+FMPV
Sbjct: 114 LPSEVELISTDRYIASVAAGHKLEMEFRIERGKGYKAIDRSREETGGVEFMQIDAVFMPV 173
Query: 240 RNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
R N+S+ ++++ ++ L +EIWTNGSLT ++A+ EA+ L+D+F P
Sbjct: 174 RKVNYSVENFIDPEGFPKDRLVMEIWTNGSLTAQQAMSEAAALLVDMFNP 223
[236][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 115 bits (287), Expect = 3e-24
Identities = 63/163 (38%), Positives = 100/163 (61%), Gaps = 4/163 (2%)
Frame = -2
Query: 570 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 391
I+HE+ST+ G++E V EIL+NLK IVLK N+ + + +GP VT+ I P + +
Sbjct: 65 INHEFSTVKGVKEDVLEILLNLKNIVLKGNVLKNQIGRLKVQGPAIVTSGQIEFPLDITV 124
Query: 390 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNANHS 223
VD Q+IA ++ L + L++E+ GY++ ++ F S ID+IFMPV+ N+
Sbjct: 125 VDPCQYIATISGNDYLEMELKVEKSSGYKL--VETFSKKSPLDFLPIDSIFMPVKKVNYY 182
Query: 222 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
+ ++ E L LE+WTNGSL+P++++ AS NL+ LF P
Sbjct: 183 VEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[237][TOP]
>UniRef100_Q6J223 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cylindrotheca
fusiformis RepID=Q6J223_CYLFU
Length = 291
Score = 114 bits (286), Expect = 4e-24
Identities = 75/187 (40%), Positives = 107/187 (57%), Gaps = 4/187 (2%)
Frame = -2
Query: 585 AKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILP 406
A+ +SHE+STI G++E + EIL+NLK IVLKS + + +GP VTA I LP
Sbjct: 48 ARIAGVSHEFSTIPGVREDILEILLNLKGIVLKSKTQTAQFGRLKIQGPTVVTADLIQLP 107
Query: 405 PSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRN 235
+ IV+ ++ ++ L I + E GY++ T + F D S N +D IFMPV+
Sbjct: 108 SDLEIVNPNHYLMTISTSNVLEIEFKFEYGTGYKL-TSQAFLDESDNYLQLDTIFMPVQK 166
Query: 234 ANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 58
N I + Y N N E +FL+IWTNGS++P EAL A++ IDLF L +E K E
Sbjct: 167 VNFKIENVYDNNNNITEQVFLDIWTNGSISPNEALKSAAQITIDLFELLLKNKETK---E 223
Query: 57 NNEHKVT 37
N+ + T
Sbjct: 224 KNKLEAT 230
[238][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 114 bits (285), Expect = 6e-24
Identities = 67/196 (34%), Positives = 114/196 (58%), Gaps = 8/196 (4%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E V +IL+N+K++VL+S+ + + +GP VT +
Sbjct: 54 TAVRIAGVNHEFATIPGVREDVLDILLNMKQVVLRSHTNDPQIGRLFVQGPATVTTDDFE 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMP 244
LP V IV+ TQ++A ++ L + +IE+ +GY KN + + IDAI+MP
Sbjct: 114 LPTEVEIVNPTQYVATLSSDATLEMEFRIEQGKGYHA-VGKNRDEAAALDFLEIDAIYMP 172
Query: 243 VRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE---E 76
VR N+ + + V G +++ L L+IWTNG+LTP+E+L +A+ L+DLF P A
Sbjct: 173 VRRVNYEVEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDATFNVV 232
Query: 75 EKLNFENNEHKVTLPL 28
E + E + +P+
Sbjct: 233 EDIELEEEDETNQIPI 248
[239][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 113 bits (282), Expect = 1e-23
Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 6/189 (3%)
Frame = -2
Query: 570 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 391
I HE++TI G++E + EIL+NLK IV+KS+ I+ + +GP +TA +I LP + I
Sbjct: 61 IRHEFATIPGVREDILEILLNLKGIVIKSDTTEIKFGRLKVQGPLVLTADSIDLPSGIKI 120
Query: 390 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSI 220
V+ +IA ++ I L + +IE GY++ + + F D + N ID+IFMPV+ N I
Sbjct: 121 VNPNHYIATISTSINLELEFKIEHGIGYKLAS-QLFNDENKNFLQIDSIFMPVQKVNFKI 179
Query: 219 HS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE--EEKLNFENNE 49
+ Y N E L LEIWTNGS+ P EAL +A + +I+ F L + +E +N
Sbjct: 180 ENLYDADNSISERLILEIWTNGSIEPIEALKKACKIIINCFNSLLKTQNTKETTKKTSNN 239
Query: 48 HKVTLPLFT 22
K+T+ +T
Sbjct: 240 RKLTIEPYT 248
[240][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 113 bits (282), Expect = 1e-23
Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 5/135 (3%)
Frame = -2
Query: 510 NLKEIVLKSNLYG-IRDASICFKGPGYVTAQNIILPPSVVIVDNTQH----IANVTEPIQ 346
N K + + S+ G + D + K GY + L + ++ N + IA + +PI
Sbjct: 14 NNKMLFVTSSFVGWLIDHILFMKWSGYDKILLLDLMYLLDLISNNNYSTILIARLKKPID 73
Query: 345 LCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIW 166
LCIGLQI+R+ Y + NFQDGSY ID +FM V+NANH+IH Y N NE+QEILFL++W
Sbjct: 74 LCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNANHNIHFYGNVNERQEILFLKLW 133
Query: 165 TNGSLTPKEALYEAS 121
TN +LTPKEA +EAS
Sbjct: 134 TNKNLTPKEAFHEAS 148
[241][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 112 bits (280), Expect = 2e-23
Identities = 64/167 (38%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + + E+S I GI+E + EIL+NLK +V+KS I + KGP VTA +I
Sbjct: 56 TAVRIAGVQDEFSIIPGIREDILEILLNLKGVVVKSATPDISFGRLKIKGPAVVTADSIQ 115
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFMPVR 238
LPP++ I++ +IA ++ L I + ER GY++ T + + IDAIFMP++
Sbjct: 116 LPPNIEIINPNHYIATISTSNVLEIEFKFERGTGYKLAGQTFCDKSEDFLQIDAIFMPIQ 175
Query: 237 NANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 100
+ I + Y N N E LFL+IWTNGS++P +A+ AS+ +I+ F
Sbjct: 176 KVDFKIENVYDNSNSITERLFLDIWTNGSISPDDAISYASKFIIEFF 222
[242][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 111 bits (278), Expect = 4e-23
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 6/172 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E V EI++N+KEIVLKS + + G +VTA
Sbjct: 54 TAIRIGGVNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFE 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMP 244
LP V +V+ TQ IA +TE +L + +IE+ GY + ++ ++ + IDA+FMP
Sbjct: 114 LPSEVEVVNPTQPIATLTEGAKLEMEFRIEKGVGY-VPVERSSEEPAALDFLQIDAVFMP 172
Query: 243 VRNANHSIHSYVNG--NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
V N+S+ S + G E ++ L LEIWTNGS PKEAL +A+ L+DLF P
Sbjct: 173 VTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[243][TOP]
>UniRef100_Q33616 Orf protein (Fragment) n=1 Tax=Musa balbisiana RepID=Q33616_MUSBA
Length = 67
Score = 111 bits (278), Expect = 4e-23
Identities = 53/67 (79%), Positives = 60/67 (89%)
Frame = -2
Query: 516 LMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIANVTEPIQLCI 337
L+NLKEIVL+SN+YG+RDASIC +GP YVTAQ+II PPSV IVD TQHIAN+TEPI LCI
Sbjct: 1 LLNLKEIVLRSNIYGVRDASICARGPKYVTAQDIISPPSVEIVDTTQHIANLTEPIDLCI 60
Query: 336 GLQIERD 316
GLQI RD
Sbjct: 61 GLQIRRD 67
[244][TOP]
>UniRef100_A6MW22 DNA-directed RNA polymerase subunit alpha n=1 Tax=Rhodomonas salina
RepID=RPOA_RHDSA
Length = 314
Score = 111 bits (278), Expect = 4e-23
Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Frame = -2
Query: 570 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 391
+SHE+STI GI+E V EIL+NLKE+VLKS + +GP VT N+ LP V +
Sbjct: 61 VSHEFSTIPGIREDVLEILLNLKEVVLKSQTKNPSVGRLRVQGPAIVTTSNLELPSEVEL 120
Query: 390 VDNTQHIANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFMPVRNANHSIH 217
+D Q+IA + L + +IE +GY + ++ +DAIFMPV+ N+
Sbjct: 121 IDPNQYIATICGNNILEMEFRIETGKGYHLIERSIDETSIDFLQVDAIFMPVKKVNYLTK 180
Query: 216 SY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 49
N N QE L LE+WTNGS+ P++A+ + + L +L P +++NF+++E
Sbjct: 181 DIRSNDNLLQEQLLLEVWTNGSIDPQDAVSQGGKILTELLHPL-----KEINFKSDE 232
[245][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 111 bits (278), Expect = 4e-23
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 3/183 (1%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T K ++E+S + GI+E V EIL+NLKEIV ++ ++ + +GP V A N+
Sbjct: 59 TSVKIPGANNEFSILPGIRESVLEILLNLKEIVFRTKSLDVQKGYLSIQGPCVVKAANLQ 118
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTL---KNFQDGSYNIDAIFMPV 241
LP S+ +VD Q+IA ++ L + I +GY++ KN S +DAIFMP+
Sbjct: 119 LPTSIEVVDGGQYIATLSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDAIFMPI 178
Query: 240 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 61
N+ + E + LEIWTNGS++P++AL + +IDLF P H E
Sbjct: 179 HKVNYMVEQDHTSKFLTERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSSEYSTN 238
Query: 60 ENN 52
+N+
Sbjct: 239 KND 241
[246][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 111 bits (277), Expect = 5e-23
Identities = 61/172 (35%), Positives = 105/172 (61%), Gaps = 6/172 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + +SHE++T+ G++E V EILM +KE++L+S + + GP VT +
Sbjct: 54 TAVRIAGVSHEFATVPGVREDVLEILMKMKEVILRSYSSQPQIGRLLVNGPATVTVAHFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFM 247
LP V ++D TQ++A + E +L + +IE+ +GYR T++ ++ + ID++FM
Sbjct: 114 LPSEVEVIDQTQYVATLAEGGKLEMEFRIEKGKGYR--TVERGREEATSLDFLQIDSVFM 171
Query: 246 PVRNANHSI-HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
PVR N+S+ + + ++ L LE+WTNGS++P+EAL A+ L++LF P
Sbjct: 172 PVRKVNYSVEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNP 223
[247][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 110 bits (274), Expect = 1e-22
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 6/172 (3%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E V EI++N+KEIVLKS + + G +VTA
Sbjct: 54 TAIRIGGVNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMP 244
LP V +++ TQ IA +TE +L + +IE+ GY + ++ + + IDA+FMP
Sbjct: 114 LPSEVEVINPTQPIATLTEGAKLEMEFRIEKGVGY-VPVERSSDEPTALDFLQIDAVFMP 172
Query: 243 VRNANHSIHSYVNG--NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
V N+S+ S + G E ++ L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 173 VTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[248][TOP]
>UniRef100_Q110D1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Trichodesmium
erythraeum IMS101 RepID=RPOA_TRIEI
Length = 314
Score = 110 bits (274), Expect = 1e-22
Identities = 65/175 (37%), Positives = 104/175 (59%), Gaps = 9/175 (5%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E V EIL+N+KE+VLKS + + +GP VTA
Sbjct: 54 TSVRIAGVNHEFATIKGVREDVLEILLNMKEVVLKSYSEQPQIGRLRVEGPATVTADRFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYR--------INTLKNFQDGSYNIDA 256
+P V ++D +Q+IA ++ L + +IE+ GY+ + TL Q IDA
Sbjct: 114 VPSEVEVIDRSQYIATLSPGSILEMEFRIEKGTGYKAVDRTRDDVATLDFLQ-----IDA 168
Query: 255 IFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
IFMPVR N++I +++ + +Q+ L ++IWTNGS TP++AL A+ L+ LF P
Sbjct: 169 IFMPVRKVNYTIEDAHIGSSLEQDRLIMDIWTNGSYTPQDALSNAAGILMSLFEP 223
[249][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 109 bits (273), Expect = 1e-22
Identities = 65/195 (33%), Positives = 111/195 (56%), Gaps = 9/195 (4%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E +IL+ +KE+VL+S + + +GP VTA N
Sbjct: 53 TAVRIAGVNHEFATIPGVREDALDILLRMKELVLRSYSPDPQIGRLFIQGPATVTAINFE 112
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPV 241
+ P V +++ +IA ++ L + +IE+ +GYR + S + IDAIFMPV
Sbjct: 113 VSPDVEVINLDHYIATLSADATLEMEFKIEQGKGYRAIERGKDESASLDFLQIDAIFMPV 172
Query: 240 RNANHSIHSYVNGN-EKQEILFLEIWTNGSLTPKEALYEASRNLIDLF-----IPFLHAE 79
R N+++ +G +++ L LEIWTNGSLTP+EAL + + L+DLF +PF +E
Sbjct: 173 RKVNYTVEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLKDVPFRSSE 232
Query: 78 EEKLNFENNEHKVTL 34
E+ +++ +
Sbjct: 233 PSHSTEEDETNQIPI 247
[250][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 109 bits (273), Expect = 1e-22
Identities = 68/171 (39%), Positives = 101/171 (59%), Gaps = 5/171 (2%)
Frame = -2
Query: 591 TRAKFEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNII 412
T + ++HE++TI G++E V EI++N+KEIVLKS + + G +VTA
Sbjct: 54 TAIRIGGVNHEFATIPGVREDVLEIMLNMKEIVLKSYTDQPQIGRLVATGAAHVTAGQFD 113
Query: 411 LPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPV 241
LP V +++ TQ IA +TE +L + +IE+ GY + + + + IDA+FMPV
Sbjct: 114 LPSEVEVINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPV 173
Query: 240 RNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 94
N+S+ S + G E + + L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 174 TKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223