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[1][TOP]
>UniRef100_B9RY90 Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis
RepID=B9RY90_RICCO
Length = 536
Score = 186 bits (471), Expect = 1e-45
Identities = 84/128 (65%), Positives = 106/128 (82%), Gaps = 1/128 (0%)
Frame = -2
Query: 532 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEE-SSEELLKEETLPF 356
SP+TGRKHQLRVHCAEVLGTPIVGDYKYGWQ HRKW ++E+ S+E L ++ LPF
Sbjct: 409 SPITGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQLPFPNLEKISNENALCKKILPF 468
Query: 355 GLNLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALELVAAMPPYMR 176
G++L GSI+EK PRLHLHCKQ+VLPD+SQAL+ VQ+ S+YD S +K++EL A +P YM+
Sbjct: 469 GIDLESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQ 528
Query: 175 RSWDVMNS 152
RSWD++NS
Sbjct: 529 RSWDILNS 536
[2][TOP]
>UniRef100_B9HS61 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9HS61_POPTR
Length = 324
Score = 179 bits (455), Expect = 8e-44
Identities = 81/126 (64%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
Frame = -2
Query: 532 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESS-EELLKEETLPF 356
SPLTGRKHQLRVHCAEVLGTPIVGDYKY WQAHR W S++E++S ++ L E+ LPF
Sbjct: 199 SPLTGRKHQLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSNDKSLSEKILPF 258
Query: 355 GLNLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALELVAAMPPYMR 176
L+L+ GSI+EK PRLHLHCKQ+VLPD+S+AL+ VQ S YD SQ+ +L+ A +PPYM+
Sbjct: 259 ALDLDSGSISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPLPPYMK 318
Query: 175 RSWDVM 158
+SWD++
Sbjct: 319 KSWDIL 324
[3][TOP]
>UniRef100_UPI0001982E23 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001982E23
Length = 476
Score = 175 bits (444), Expect = 2e-42
Identities = 81/128 (63%), Positives = 105/128 (82%), Gaps = 1/128 (0%)
Frame = -2
Query: 532 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEE-LLKEETLPF 356
SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKW S++E++ +E L +T PF
Sbjct: 349 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRKTHPF 408
Query: 355 GLNLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALELVAAMPPYMR 176
GL+L GSI +KQP LHLHCKQ+VLP++S AL+++Q + DLS++++LE VA +P +M+
Sbjct: 409 GLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQ 468
Query: 175 RSWDVMNS 152
RSWD++NS
Sbjct: 469 RSWDILNS 476
[4][TOP]
>UniRef100_B9G227 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9G227_ORYSJ
Length = 465
Score = 150 bits (378), Expect = 7e-35
Identities = 76/127 (59%), Positives = 93/127 (73%), Gaps = 1/127 (0%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P TGRKHQLRVHCAEVLGTPIVGDYKYG QAH+KW L EELL++ LPFGL
Sbjct: 338 PRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKWMPLPLP--RTIDEELLRKRKLPFGL 395
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQ-SDSSYDLSQVKALELVAAMPPYMRR 173
+ GSI E+QP+LHLHCKQ+VLPD+S AL +Q SD + D S ++ L VA +P +MR
Sbjct: 396 VVGGGSIAEEQPQLHLHCKQMVLPDVSVALHRLQSSDVNPDFSDLEKLNFVAPLPLHMRL 455
Query: 172 SWDVMNS 152
SW+++ S
Sbjct: 456 SWEILKS 462
[5][TOP]
>UniRef100_B8BCS6 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BCS6_ORYSI
Length = 465
Score = 150 bits (378), Expect = 7e-35
Identities = 76/127 (59%), Positives = 93/127 (73%), Gaps = 1/127 (0%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P TGRKHQLRVHCAEVLGTPIVGDYKYG QAH+KW L EELL++ LPFGL
Sbjct: 338 PRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKWMPLPLP--RTIDEELLRKRKLPFGL 395
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQ-SDSSYDLSQVKALELVAAMPPYMRR 173
+ GSI E+QP+LHLHCKQ+VLPD+S AL +Q SD + D S ++ L VA +P +MR
Sbjct: 396 VVGGGSIAEEQPQLHLHCKQMVLPDVSVALHRLQSSDVNPDFSDLEKLNFVAPLPLHMRL 455
Query: 172 SWDVMNS 152
SW+++ S
Sbjct: 456 SWEILKS 462
[6][TOP]
>UniRef100_C4J8T2 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C4J8T2_MAIZE
Length = 272
Score = 146 bits (369), Expect = 8e-34
Identities = 71/127 (55%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P TGRKHQLRVHCAEVLGTPIVGDYKYG QAH+ W L + +E+LK+ LPFGL
Sbjct: 145 PRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNW--MPLPMPQTIDKEMLKKRKLPFGL 202
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQ-SDSSYDLSQVKALELVAAMPPYMRR 173
L GS+ E+QP+LHLHCKQ++LPDIS A++ ++ SD+ +D S ++ L VA +P +M+
Sbjct: 203 TLGGGSVAEQQPQLHLHCKQMILPDISAAMQQLRSSDADHDFSDLEKLSFVAPLPLHMQL 262
Query: 172 SWDVMNS 152
SW ++ S
Sbjct: 263 SWKILLS 269
[7][TOP]
>UniRef100_Q9LT72 RNA pseudourine synthase 4, mitochondrial n=1 Tax=Arabidopsis
thaliana RepID=PUS4_ARATH
Length = 477
Score = 135 bits (340), Expect = 2e-30
Identities = 67/126 (53%), Positives = 88/126 (69%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+ F S K+ + PFGL
Sbjct: 349 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPF-----VSSENNPTKQSSSPFGL 403
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALELVAAMPPYMRRS 170
+L+ G ++ KQP LHLH KQI LP+ISQ L+ +Q S D+S + +L+ A +P +M+ S
Sbjct: 404 DLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLS 463
Query: 169 WDVMNS 152
++++ S
Sbjct: 464 FNLLKS 469
[8][TOP]
>UniRef100_B6U2M4 RNA binding protein n=1 Tax=Zea mays RepID=B6U2M4_MAIZE
Length = 439
Score = 129 bits (325), Expect = 1e-28
Identities = 63/103 (61%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P TGRKHQLRVHCAEVLGTPIVGDYKYG QAH+ W L + +E+LK+ LPFGL
Sbjct: 335 PRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNW--MPLPMPQTIDKEMLKKRKLPFGL 392
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQ-SDSSYDLS 224
L GS+ E+QP+LHLHCKQ++LPDIS A++ ++ SD+ +D S
Sbjct: 393 TLGGGSVAEQQPQLHLHCKQMILPDISAAMQQLRSSDADHDFS 435
[9][TOP]
>UniRef100_C5YIB1 Putative uncharacterized protein Sb07g027030 n=1 Tax=Sorghum
bicolor RepID=C5YIB1_SORBI
Length = 439
Score = 125 bits (313), Expect = 2e-27
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 4/130 (3%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
PLTGRKHQLRVHCAE LGTPIVGDYKYGW H+ W D E + E K P GL
Sbjct: 308 PLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQTWKQNPQPDFEPFTGEPYKLRR-PEGL 366
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHV----QSDSSYDLSQVKALELVAAMPPY 182
+ KGS+ K P LHLHC+++V+P+I++ L ++ + + + L VA MPP+
Sbjct: 367 EIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSTGEWHENGAPWAKEKPNLLRFVAPMPPH 426
Query: 181 MRRSWDVMNS 152
M+ SW++M+S
Sbjct: 427 MKISWNIMSS 436
[10][TOP]
>UniRef100_C0HH71 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C0HH71_MAIZE
Length = 237
Score = 125 bits (313), Expect = 2e-27
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 4/130 (3%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
PLTGRKHQLRVHCAE LGTPIVGDYKYGW H+ W D E + E K P GL
Sbjct: 106 PLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQTWKQNPQPDFEPFTGEPYKLRR-PEGL 164
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHV----QSDSSYDLSQVKALELVAAMPPY 182
+ KGS+ K P LHLHC+++V+P+I++ L ++ + + + L VA MPP+
Sbjct: 165 EIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSTGGWHENGTPWAKEKPNLLRFVAPMPPH 224
Query: 181 MRRSWDVMNS 152
M+ SW++M+S
Sbjct: 225 MKISWNIMSS 234
[11][TOP]
>UniRef100_B9N0H4 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9N0H4_POPTR
Length = 177
Score = 124 bits (310), Expect = 5e-27
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 4/130 (3%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
PLT RKHQLRVHCAE LGTPIVGDYKYGW HR+W D+E SS + K P G+
Sbjct: 46 PLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPSSGKPYKLR-WPEGV 104
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYD----LSQVKALELVAAMPPY 182
++ KGS+ K P LHLHC+++VLP+I++ L + S ++ L VA+MP +
Sbjct: 105 DIQKGSVLAKVPLLHLHCRELVLPNIAKFLDVLDGKSENVHPALSTRPDLLRFVASMPSH 164
Query: 181 MRRSWDVMNS 152
M+ SW++M+S
Sbjct: 165 MKISWNLMSS 174
[12][TOP]
>UniRef100_B9SLG9 Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis
RepID=B9SLG9_RICCO
Length = 468
Score = 123 bits (309), Expect = 7e-27
Identities = 63/130 (48%), Positives = 87/130 (66%), Gaps = 4/130 (3%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
PLT RKHQLRVHCAE LGTPIVGDYKYGW H++W D+E S + K P GL
Sbjct: 337 PLTSRKHQLRVHCAEALGTPIVGDYKYGWCVHQRWKQMPRVDIEPFSGKPYKLRR-PAGL 395
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQ--ALKHVQSDSSYDLSQVK--ALELVAAMPPY 182
++ KGS+ K P LHLHC++ VLP+I++ A+ + +S++ + K L VA+MP +
Sbjct: 396 DVQKGSVLSKVPLLHLHCREFVLPNIAKFLAVLNEKSENIHPALDAKPDLLRFVASMPTH 455
Query: 181 MRRSWDVMNS 152
M+ SW++M+S
Sbjct: 456 MKISWNLMSS 465
[13][TOP]
>UniRef100_Q5XET6-2 Isoform 2 of RNA pseudourine synthase 3, mitochondrial n=1
Tax=Arabidopsis thaliana RepID=Q5XET6-2
Length = 326
Score = 123 bits (309), Expect = 7e-27
Identities = 61/132 (46%), Positives = 87/132 (65%), Gaps = 6/132 (4%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P+T RKHQLRVHCAE LGTPIVGDYKYGW H++W D+E ++ + K P GL
Sbjct: 194 PITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRR-PEGL 252
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYD------LSQVKALELVAAMP 188
++ KGS+ K P LHLHC+++VLP+I++ L HV + + + + L VA+MP
Sbjct: 253 DVQKGSVLSKVPLLHLHCREMVLPNIAKFL-HVMNQQETEPLHTGIIDKPDLLRFVASMP 311
Query: 187 PYMRRSWDVMNS 152
+M+ SW++M+S
Sbjct: 312 SHMKISWNLMSS 323
[14][TOP]
>UniRef100_Q5XET6 RNA pseudourine synthase 3, mitochondrial n=1 Tax=Arabidopsis
thaliana RepID=PUS3_ARATH
Length = 478
Score = 123 bits (309), Expect = 7e-27
Identities = 61/132 (46%), Positives = 87/132 (65%), Gaps = 6/132 (4%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P+T RKHQLRVHCAE LGTPIVGDYKYGW H++W D+E ++ + K P GL
Sbjct: 346 PITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRR-PEGL 404
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYD------LSQVKALELVAAMP 188
++ KGS+ K P LHLHC+++VLP+I++ L HV + + + + L VA+MP
Sbjct: 405 DVQKGSVLSKVPLLHLHCREMVLPNIAKFL-HVMNQQETEPLHTGIIDKPDLLRFVASMP 463
Query: 187 PYMRRSWDVMNS 152
+M+ SW++M+S
Sbjct: 464 SHMKISWNLMSS 475
[15][TOP]
>UniRef100_A3BUX1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BUX1_ORYSJ
Length = 509
Score = 122 bits (306), Expect = 2e-26
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 4/130 (3%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
PLTGRKHQLRVHCAE LGTPIVGDYKYGW H++W D E + E K P GL
Sbjct: 378 PLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRR-PEGL 436
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQAL----KHVQSDSSYDLSQVKALELVAAMPPY 182
+ KGS+ K P LHLHC+++V+P+I++ L + ++ + + + L +A MP +
Sbjct: 437 EIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKEKPNLLRFIAPMPAH 496
Query: 181 MRRSWDVMNS 152
M+ SW++M+S
Sbjct: 497 MKISWNIMSS 506
[16][TOP]
>UniRef100_Q0J4D4 RNA pseudourine synthase 3, mitochondrial n=2 Tax=Oryza sativa
RepID=PUS3_ORYSJ
Length = 475
Score = 122 bits (306), Expect = 2e-26
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 4/130 (3%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
PLTGRKHQLRVHCAE LGTPIVGDYKYGW H++W D E + E K P GL
Sbjct: 344 PLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRR-PEGL 402
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQAL----KHVQSDSSYDLSQVKALELVAAMPPY 182
+ KGS+ K P LHLHC+++V+P+I++ L + ++ + + + L +A MP +
Sbjct: 403 EIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKEKPNLLRFIAPMPAH 462
Query: 181 MRRSWDVMNS 152
M+ SW++M+S
Sbjct: 463 MKISWNIMSS 472
[17][TOP]
>UniRef100_A7P9Q6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9Q6_VITVI
Length = 340
Score = 84.7 bits (208), Expect(2) = 3e-26
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = -2
Query: 532 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKW 425
SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKW
Sbjct: 223 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKW 258
Score = 57.8 bits (138), Expect(2) = 3e-26
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = -3
Query: 402 WKSR--VKSFSKKRHSPLALI*TREASMRSNPVYISIASK*FCPIYLKH*SMCNQIRVMT 229
WK +K F +RH LALI E S ++P ISI SK FCP++L +CN ++ +
Sbjct: 258 WKQLTWMKIFPIERHILLALIWRVEVSWINSPTCISIVSKWFCPMFLWPCRICNYLQSVI 317
Query: 228 FHK*KHLSWSRLCLHTCEGVG 166
F K S LCLHTC+ VG
Sbjct: 318 FQNWKASSLLLLCLHTCKEVG 338
[18][TOP]
>UniRef100_UPI0001984024 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984024
Length = 479
Score = 120 bits (302), Expect = 5e-26
Identities = 61/132 (46%), Positives = 87/132 (65%), Gaps = 6/132 (4%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P T RKHQLRVHCAE LGTPIVGDYKYGW HR+W D+E ++ + K P GL
Sbjct: 346 PRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTGKPYKMRR-PEGL 404
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHV----QSDSSYDLSQVK--ALELVAAMP 188
++ KGS+ K P LHLHC++++LP+I++ L + ++ + Y +K L VA+MP
Sbjct: 405 DVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPKPKNQNQYPKLSLKPDILRFVASMP 464
Query: 187 PYMRRSWDVMNS 152
+M+ SW++M+S
Sbjct: 465 NHMKISWNLMSS 476
[19][TOP]
>UniRef100_A7Q499 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q499_VITVI
Length = 481
Score = 120 bits (302), Expect = 5e-26
Identities = 61/132 (46%), Positives = 87/132 (65%), Gaps = 6/132 (4%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P T RKHQLRVHCAE LGTPIVGDYKYGW HR+W D+E ++ + K P GL
Sbjct: 348 PRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTGKPYKMRR-PEGL 406
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHV----QSDSSYDLSQVK--ALELVAAMP 188
++ KGS+ K P LHLHC++++LP+I++ L + ++ + Y +K L VA+MP
Sbjct: 407 DVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPKPKNQNQYPKLSLKPDILRFVASMP 466
Query: 187 PYMRRSWDVMNS 152
+M+ SW++M+S
Sbjct: 467 NHMKISWNLMSS 478
[20][TOP]
>UniRef100_A9RZN1 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9RZN1_PHYPA
Length = 283
Score = 112 bits (281), Expect = 1e-23
Identities = 60/131 (45%), Positives = 82/131 (62%), Gaps = 8/131 (6%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
PLTGRKHQ+RVHCAEVLG PIVGDYKYGW+A R W D ++ +SS L+E
Sbjct: 154 PLTGRKHQIRVHCAEVLGMPIVGDYKYGWRALRLWPPTDRTEDTKSSVLGLRE------- 206
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALK-------HVQSDSSYDLSQ-VKALELVAA 194
G + +P LHLHC+Q++LPD++QA K Q+ + SQ + LE++A
Sbjct: 207 ---SGHVWSSKPYLHLHCRQLILPDVAQAFKSQSRERSSAQTGARVSGSQFAEPLEIIAP 263
Query: 193 MPPYMRRSWDV 161
+PP+M SW++
Sbjct: 264 LPPHMVVSWNM 274
[21][TOP]
>UniRef100_A4S8Z7 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S8Z7_OSTLU
Length = 321
Score = 65.5 bits (158), Expect = 2e-09
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Frame = -2
Query: 532 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFG 353
+P+TGRKHQLRVH A+ L +PI+GDYKYG+ R +D+E + E KE F
Sbjct: 209 TPITGRKHQLRVHLAKALSSPIIGDYKYGFNDRRAPWKSRFTDIESADVESEKES--DFW 266
Query: 352 LNLNKGSIN--EKQPRLHLHCK--QIVLPDISQALKHVQSDSSYDLSQVKALEL 203
L + S+ K P LHLH + Q V P+ + + V + + ++A +L
Sbjct: 267 RKLRRASLRGVSKIP-LHLHARALQFVHPESGVSTRVVAEPPPHFAAALRAFDL 319
[22][TOP]
>UniRef100_Q11HT2 Pseudouridine synthase n=1 Tax=Chelativorans sp. BNC1
RepID=Q11HT2_MESSB
Length = 327
Score = 58.2 bits (139), Expect = 4e-07
Identities = 40/124 (32%), Positives = 59/124 (47%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P TGR HQLRVH A + G PI+GD KY ++A + W LP G+
Sbjct: 240 PFTGRMHQLRVHAAHI-GCPIIGDPKY-FEADQNWE-------------------LPGGI 278
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALELVAAMPPYMRRS 170
Q RLHLH ++I++P H S +++ A MPP+M++S
Sbjct: 279 ----------QNRLHLHARRIIIP-------HPDGGS---------IDVTAEMPPHMQQS 312
Query: 169 WDVM 158
W+++
Sbjct: 313 WNLL 316
[23][TOP]
>UniRef100_Q98N25 Pseudouridine synthase n=1 Tax=Mesorhizobium loti
RepID=Q98N25_RHILO
Length = 326
Score = 57.0 bits (136), Expect = 8e-07
Identities = 39/124 (31%), Positives = 57/124 (45%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P TGR HQLRVH A +G PI+GD KY ++A W P G+
Sbjct: 241 PYTGRTHQLRVHAA-YIGCPIIGDPKY-FEADTNWD-------------------FPGGI 279
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALELVAAMPPYMRRS 170
Q RLHLH ++I++P + L +++ A MPP+MR+S
Sbjct: 280 ----------QNRLHLHARRIIIPHPDKGL----------------IDVTAPMPPHMRQS 313
Query: 169 WDVM 158
W+++
Sbjct: 314 WNLI 317
[24][TOP]
>UniRef100_C8SWC1 Pseudouridine synthase, RluA family n=1 Tax=Mesorhizobium
opportunistum WSM2075 RepID=C8SWC1_9RHIZ
Length = 326
Score = 55.8 bits (133), Expect = 2e-06
Identities = 39/124 (31%), Positives = 56/124 (45%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P TGR HQLRVH A +G PI+GD KY ++A W P G+
Sbjct: 241 PYTGRTHQLRVHAA-YIGCPIIGDPKY-FEADTNWD-------------------FPGGI 279
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALELVAAMPPYMRRS 170
Q RLHLH ++IV+P + +++ A MPP+MR+S
Sbjct: 280 ----------QNRLHLHARRIVIPHPDKGF----------------IDVTAPMPPHMRQS 313
Query: 169 WDVM 158
W+++
Sbjct: 314 WNLI 317
[25][TOP]
>UniRef100_C5VJ38 Pseudouridine synthase n=1 Tax=Prevotella melaninogenica ATCC 25845
RepID=C5VJ38_9BACT
Length = 571
Score = 55.5 bits (132), Expect = 2e-06
Identities = 26/39 (66%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Frame = -2
Query: 529 PLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQAHRKWSH 419
PLTGR HQLRVHCA + LGTPI+GD YG +A R W H
Sbjct: 512 PLTGRTHQLRVHCAHPDGLGTPIIGDNLYGQRAERLWLH 550
[26][TOP]
>UniRef100_B7QX41 Pseudouridine synthase n=1 Tax=Ruegeria sp. R11 RepID=B7QX41_9RHOB
Length = 348
Score = 55.1 bits (131), Expect = 3e-06
Identities = 41/127 (32%), Positives = 54/127 (42%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P+TGR HQLR H AE+ G PI GD KYG +E L G
Sbjct: 248 PITGRTHQLRAHMAEI-GHPIAGDGKYGGSG---------------------QENLGDGW 285
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALELVAAMPPYMRRS 170
G I K +LHLHC+++ A +H + K L + A +P +M+ S
Sbjct: 286 GAQLGGIISK--KLHLHCRRM-------AFEHPTTK--------KPLSITAPLPEHMKES 328
Query: 169 WDVMNSS 149
WD S
Sbjct: 329 WDTFGWS 335
[27][TOP]
>UniRef100_A9EHL2 Pseudouridine synthase n=2 Tax=Phaeobacter gallaeciensis
RepID=A9EHL2_9RHOB
Length = 348
Score = 54.7 bits (130), Expect = 4e-06
Identities = 41/127 (32%), Positives = 55/127 (43%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEELLKEETLPFGL 350
P+TGR HQLR H AE+ G PI GD KYG + +E L G
Sbjct: 248 PITGRTHQLRAHMAEI-GHPIAGDGKYGGSS---------------------QENLGDGW 285
Query: 349 NLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALELVAAMPPYMRRS 170
G I K +LHLHC+++ A +H + K L + A +P +M+ S
Sbjct: 286 GAQLGGIISK--KLHLHCRRM-------AFEHPTTK--------KPLSITAPLPDHMKDS 328
Query: 169 WDVMNSS 149
WD S
Sbjct: 329 WDTFGWS 335
[28][TOP]
>UniRef100_C1E1G0 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1G0_9CHLO
Length = 327
Score = 54.3 bits (129), Expect = 5e-06
Identities = 40/118 (33%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRK-------WSHFDLSDVEESSEELLKE 371
P TGRKHQLRVHCA L IVGDYKYG++ + W L D++E S L +
Sbjct: 198 PRTGRKHQLRVHCAGALDAAIVGDYKYGYRDVSRTGGVADDWRRV-LRDIDERSTRRLND 256
Query: 370 ETLPFGLNLNKGSINEKQPRLHLH--CKQIVLPDISQALKHVQSDSSYDLSQVKALEL 203
G + LHLH C + P + ++ V S+ +AL L
Sbjct: 257 ------AGTADGEVRGAGVPLHLHARCVEFTHPSSGERVRVVAPAPSHMSLACEALGL 308
[29][TOP]
>UniRef100_Q00TL6 Pseudouridine synthase family protein (ISS) n=1 Tax=Ostreococcus
tauri RepID=Q00TL6_OSTTA
Length = 476
Score = 53.9 bits (128), Expect = 7e-06
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = -2
Query: 529 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDLSDVEESSEE 383
P+TGRKHQLRVH ++ L +PIVGDYKYG+ +K +++E E
Sbjct: 355 PITGRKHQLRVHLSKALSSPIVGDYKYGFTDKQKPWRARFAEIERLERE 403