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[1][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 307 bits (786), Expect = 3e-82
Identities = 150/156 (96%), Positives = 153/156 (98%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSNLYGIRDASICFKGPGYVTA ++ILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD
Sbjct: 95 VLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRINTL NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLFIPFLHAEEEKLNFEN+EHKVTLPL
Sbjct: 215 LYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPL 250
[2][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 286 bits (731), Expect = 7e-76
Identities = 139/156 (89%), Positives = 144/156 (92%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSNLYG RDASICFKGPGYVTA D+ILPPSV IVDNTQHIAN+TEPI LCI LQIER
Sbjct: 95 VLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERK 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI TL N QDGSY IDA+FMPVRNANHSIHSYVNGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLFIPFLHAEEE LNFEN++HKVTLPL
Sbjct: 215 LYEASRNLIDLFIPFLHAEEENLNFENNQHKVTLPL 250
[3][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 278 bits (710), Expect = 2e-73
Identities = 134/156 (85%), Positives = 142/156 (91%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASICFKGPGYVTA D+ILPPSV IVDNTQHIANVTEP+ LCI L+IER+
Sbjct: 95 VLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANVTEPVNLCIELKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI TL NFQDGSY IDA FMPVRN NHSIHSYVNGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLFIPFLHAEE+ N EN++HKVTLPL
Sbjct: 215 LYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLPL 250
[4][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 278 bits (710), Expect = 2e-73
Identities = 134/156 (85%), Positives = 142/156 (91%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASICFKGPGYVTA D+ILPPSV IVDNTQHIANVTEP+ LCI L+IER+
Sbjct: 95 VLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANVTEPVNLCIELKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI TL NFQDGSY IDA FMPVRN NHSIHSYVNGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLFIPFLHAEE+ N EN++HKVTLPL
Sbjct: 215 LYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLPL 250
[5][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 273 bits (697), Expect = 6e-72
Identities = 132/156 (84%), Positives = 143/156 (91%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+ASICFKGPGYVTA D+ILP SV ++DNTQHIAN+TEPI LCI LQIER
Sbjct: 95 VLRSNLYGTREASICFKGPGYVTAQDIILP-SVEVIDNTQHIANLTEPINLCIELQIERK 153
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI TL N QDGSY IDA+FMPVRNANHSIHSYVNGN+K EILFLEIWTNGSLTPKEA
Sbjct: 154 RGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNQKQEILFLEIWTNGSLTPKEA 213
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLFIPFLHAEEE LNFEN++HK+TLPL
Sbjct: 214 LYEASRNLIDLFIPFLHAEEENLNFENNQHKMTLPL 249
[6][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 266 bits (681), Expect = 4e-70
Identities = 129/156 (82%), Positives = 141/156 (90%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASICFKGPG VTA D+ILPPSV IVDNTQHIAN+TEPI LC+ L++ER+
Sbjct: 95 VLRSNLYGTRDASICFKGPGSVTAQDIILPPSVEIVDNTQHIANLTEPINLCMELKLERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI TL N QD SY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRIKTLNNIQDESYTIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLIDLFIPFLHAEE+KLN EN++ KVTLPL
Sbjct: 215 LFEASRNLIDLFIPFLHAEEDKLNLENNQQKVTLPL 250
[7][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 264 bits (675), Expect = 2e-69
Identities = 128/156 (82%), Positives = 139/156 (89%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSN+YG +DASI FKGPGY+TA D+ILPPSV IVDN QHIANVTEP+ LCI L+IER+
Sbjct: 95 VLKSNMYGTQDASISFKGPGYITAQDIILPPSVEIVDNRQHIANVTEPVNLCIELKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI TL NFQDGSY+IDA FMPVRN N+SIHSYVNGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEAS+NLIDLFIPFLHAEEE N E +HKVTLPL
Sbjct: 215 LYEASQNLIDLFIPFLHAEEENFNLEKKKHKVTLPL 250
[8][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 263 bits (671), Expect = 6e-69
Identities = 126/156 (80%), Positives = 141/156 (90%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSN+YGI+DASI FKGPGY+TA D+ILPPSV IVDN QHIANVTEP+ LCI L+IER+
Sbjct: 95 VLKSNMYGIQDASISFKGPGYITAQDIILPPSVEIVDNRQHIANVTEPVHLCIELKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI TL NFQDGSY+IDA FMPVRN N+SIHSYVNGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEAS+NLI+LFIPFLHAEE+ + E ++HKVTLPL
Sbjct: 215 LYEASQNLIELFIPFLHAEEDNFHLEKNQHKVTLPL 250
[9][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 259 bits (661), Expect = 9e-68
Identities = 127/155 (81%), Positives = 139/155 (89%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+ASIC KGPG VTA D+ILP SV IVDNTQ+IAN+TEPI LCIGLQIER+
Sbjct: 95 VLRSNLYGTRNASICVKGPGCVTAQDIILPTSVEIVDNTQYIANLTEPINLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHIKTPKNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLHAEEE L+ EN+++KVTLP
Sbjct: 215 LHEASRNLIDLFIPFLHAEEENLHLENNQYKVTLP 249
[10][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 258 bits (659), Expect = 2e-67
Identities = 127/158 (80%), Positives = 139/158 (87%), Gaps = 2/158 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASICFKGPGYVTA D+ILPPSV IVDNTQHIAN+TEPI LCI LQIER
Sbjct: 95 VLRSNLYGTRDASICFKGPGYVTARDIILPPSVEIVDNTQHIANLTEPINLCIELQIERA 154
Query: 324 RGYRINTLTNFQDGSYNIDA--IFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPK 151
RGYR T+ N QDGSY ID +FMPV +AN+SIHSY+N NEK EILFLEIWTNGSLTPK
Sbjct: 155 RGYRKKTIDNIQDGSYTIDVDPVFMPVIHANYSIHSYLNANEKQEILFLEIWTNGSLTPK 214
Query: 150 EALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
EALYEA+RNLIDLFIPFLHAEEE +FEN++HKVTLPL
Sbjct: 215 EALYEAARNLIDLFIPFLHAEEENFHFENNQHKVTLPL 252
[11][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 258 bits (659), Expect = 2e-67
Identities = 128/156 (82%), Positives = 138/156 (88%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASIC KGPGYVTA D+ILPPSV IVDNTQHIAN+TEPI LCI LQIER+
Sbjct: 95 VLRSNLYGTRDASICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPITLCIELQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI T NFQ+GSY IDA+FMPVRNANHSIHSYVNGNE EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRIKTPNNFQNGSYPIDAVFMPVRNANHSIHSYVNGNENQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLIDLFIPF HAEE + EN++HK TLPL
Sbjct: 215 LHEASRNLIDLFIPFFHAEE---HLENNQHKGTLPL 247
[12][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 257 bits (656), Expect = 3e-67
Identities = 125/155 (80%), Positives = 135/155 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC KGPGYVTA D+ILPPSV IVDNTQHIA++TEPI LCIGLQIER+
Sbjct: 97 VLRSNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHIASLTEPIDLCIGLQIERN 156
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NF DGSY ID +FMPVRN NHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 157 RGYGIKTPNNFHDGSYPIDVVFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 216
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLHAEEE + EN +HKVTLP
Sbjct: 217 LHEASRNLIDLFIPFLHAEEENSHLENSQHKVTLP 251
[13][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 256 bits (655), Expect = 5e-67
Identities = 126/156 (80%), Positives = 137/156 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSNLYG DASI KGPGYVTA D+ILPP V I+DNTQHIA++TE I LCIGLQIER+
Sbjct: 95 VLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEIIDNTQHIASLTESIDLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI NFQDGSY IDA+FMPVRNANHS+HSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLIDLFIPFLHAEEE L+ E ++HKVTLPL
Sbjct: 215 LHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPL 250
[14][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 256 bits (653), Expect = 8e-67
Identities = 125/155 (80%), Positives = 137/155 (88%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDA IC KGPGYVTA D++LPPSV IVDNTQHIA++TEPI L IGLQIER+
Sbjct: 95 VLRSNLYGTRDAFICVKGPGYVTAQDIVLPPSVEIVDNTQHIASLTEPIDLRIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NFQDGSY IDA+FMPV+NANHSIHSY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYGIKTPNNFQDGSYPIDAVFMPVQNANHSIHSYGTGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLI+LFIPFLHAEEEK EN++HKVTLP
Sbjct: 215 LHEASRNLINLFIPFLHAEEEKFYLENNQHKVTLP 249
[15][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 254 bits (650), Expect = 2e-66
Identities = 128/158 (81%), Positives = 138/158 (87%), Gaps = 2/158 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASIC KGPG VTA D+ILPPSV IVDNTQHIAN+ EPI LCI L+IER+
Sbjct: 95 VLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NFQD SY +DAIFMPVRN NHSIHSYVNGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNF--ENHEHKVTLPL 37
L+EASRNLIDLFIPFLHAEEEK NF +N++ KVTLPL
Sbjct: 215 LHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKVTLPL 252
[16][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 252 bits (644), Expect = 9e-66
Identities = 122/155 (78%), Positives = 134/155 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+ NLYG R+A IC KGPGYVTA D+ILPPSV IVDNTQH+A++TEPI LCIGLQIER+
Sbjct: 97 VLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHVASLTEPIDLCIGLQIERN 156
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NF DGSY IDA+FMPVRNANHSIH Y N NEK EILFLEIWTNGSLTPKEA
Sbjct: 157 RGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEA 216
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLH EEE L+ EN++H VTLP
Sbjct: 217 LHEASRNLIDLFIPFLHTEEENLHLENNQHDVTLP 251
[17][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 252 bits (643), Expect = 1e-65
Identities = 121/156 (77%), Positives = 136/156 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SN+YG+RDASIC +GP YVTA D+I PPSV IVD TQHIAN+TEPI LCIGLQI RD
Sbjct: 95 VLRSNIYGVRDASICARGPKYVTAQDIISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR TN Q+GSY IDA+ MPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRTKPTTNSQNGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLFIPFLHAEEE +NF+ ++++ TLP+
Sbjct: 215 LYEASRNLIDLFIPFLHAEEEDINFKENKNRFTLPI 250
[18][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 250 bits (639), Expect = 3e-65
Identities = 121/155 (78%), Positives = 136/155 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLY IRDASIC +GP YVTA D+I PP V IVD TQ+IAN+TEPI LCI L+I+RD
Sbjct: 95 VLRSNLYEIRDASICVRGPRYVTAQDIISPPYVEIVDTTQYIANLTEPIDLCIELEIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ +TN QDGSY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDLF+PFLHAEEE +NFE +++K TLP
Sbjct: 215 LYEASRNLIDLFVPFLHAEEEDINFEENKNKFTLP 249
[19][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 249 bits (637), Expect = 6e-65
Identities = 120/156 (76%), Positives = 136/156 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC KGPG VTA D+ILPPSV I+DNTQHIA++ EPI L IGL+IER+
Sbjct: 95 VLRSNLYGTHDASICVKGPGCVTAQDIILPPSVEIIDNTQHIASLREPIDLHIGLEIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NFQDGSY+IDA+FMPVRNANHS+HSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLIDLFIPFLHAEEE + E ++HK+TLPL
Sbjct: 215 LHEASRNLIDLFIPFLHAEEENFHLEKNQHKITLPL 250
[20][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 249 bits (636), Expect = 7e-65
Identities = 122/155 (78%), Positives = 135/155 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC +GP YVTA D+ILPPSV IVD TQHIAN+TEPI L I LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVRGPRYVTAQDIILPPSVEIVDPTQHIANLTEPIDLYIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ N QDGSY IDA+ MPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMEPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDLFIPFLHAEEE +NFE ++++ TLP
Sbjct: 215 LYEASRNLIDLFIPFLHAEEEDINFEENKNRFTLP 249
[21][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 249 bits (636), Expect = 7e-65
Identities = 122/155 (78%), Positives = 133/155 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R A IC +GPGYVTA D+I PPSV IVDNTQHIA + EPI LCIGLQIER+
Sbjct: 89 VLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERN 148
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I NFQDGSY IDA+FMPVRNANHSIHSY NGNE+ EILFLEIWTNGSLTPKEA
Sbjct: 149 RGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEA 208
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLHAEEE L+ E ++HK TLP
Sbjct: 209 LHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTLP 243
[22][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 249 bits (636), Expect = 7e-65
Identities = 122/155 (78%), Positives = 133/155 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R A IC +GPGYVTA D+I PPSV IVDNTQHIA + EPI LCIGLQIER+
Sbjct: 95 VLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I NFQDGSY IDA+FMPVRNANHSIHSY NGNE+ EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLHAEEE L+ E ++HK TLP
Sbjct: 215 LHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTLP 249
[23][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 249 bits (635), Expect = 1e-64
Identities = 124/160 (77%), Positives = 138/160 (86%), Gaps = 4/160 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC KGPGYVTA D+ILPP V I+DNTQHIA++T+ I LCIGLQIER+
Sbjct: 95 VLRSNLYGTCDASICVKGPGYVTAQDIILPPFVEIIDNTQHIASLTKAIDLCIGLQIERN 154
Query: 324 RGYRINTLTNFQ--DGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPK 151
RGYRI NFQ DGSY+IDA+FMPVRNANHS+HSY NGNEK EILFLEIWTNGSLTPK
Sbjct: 155 RGYRIKPTNNFQVQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPK 214
Query: 150 EALYEASRNLIDLFIPFLHAEEEKLN--FENHEHKVTLPL 37
EAL+EASRNLID FIPFLHAEEE L+ E ++HKVTLPL
Sbjct: 215 EALHEASRNLIDFFIPFLHAEEENLHLEIEKNQHKVTLPL 254
[24][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 248 bits (632), Expect = 2e-64
Identities = 119/156 (76%), Positives = 136/156 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +ASIC KGPG VTA D+ILPPSV I+DNTQHIA++ EPI L IGL+IER+
Sbjct: 95 VLRSNLYGTHNASICVKGPGCVTAQDIILPPSVEIIDNTQHIASLREPIDLHIGLEIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NFQDGSY+IDA+FMPVRNANHS+HSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLIDLFIPFLHAEEE + E ++HK+TLPL
Sbjct: 215 LHEASRNLIDLFIPFLHAEEESFHLEKNQHKITLPL 250
[25][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 248 bits (632), Expect = 2e-64
Identities = 119/155 (76%), Positives = 135/155 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+ASIC +GPGYVTA D+I PPSV VDNTQHIAN+TEPI CI L+IER+
Sbjct: 95 VLRSNLYGTRNASICIRGPGYVTAQDIISPPSVETVDNTQHIANLTEPIDFCIELEIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ T N QDGSY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMKTPNNSQDGSYPIDAVFMPVRNANHSIHSYANGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLHA+EE + E++++ VTLP
Sbjct: 215 LHEASRNLIDLFIPFLHAQEENILLEDNQNGVTLP 249
[26][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 246 bits (629), Expect = 5e-64
Identities = 125/160 (78%), Positives = 136/160 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC KGPG VTA D+ILPPSV IVDNTQHIA +TEPI CIGLQIER+
Sbjct: 95 VLRSNLYGTCDASICVKGPGCVTAEDIILPPSVEIVDNTQHIAWLTEPIDFCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + T NF+DGSY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYILKTHHNFEDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPLPYLS 25
L+EASRNLIDLFIPFLH EEE L+ E+ EH T+PL LS
Sbjct: 215 LHEASRNLIDLFIPFLHMEEENLHLEDGEH--TIPLSPLS 252
[27][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 246 bits (629), Expect = 5e-64
Identities = 119/154 (77%), Positives = 133/154 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +AS+C KGPGYVTA D+ILPP V IVDNTQHIA++TEPI CIGLQIER+
Sbjct: 95 VLRSNLYGTSEASVCVKGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L+EASRNLIDLFIPFLH EE+ L ++++H V L
Sbjct: 215 LHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
[28][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 246 bits (628), Expect = 6e-64
Identities = 119/156 (76%), Positives = 134/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
+L+SNLYG+ DASIC +GP YVTA D+I PP V IVD TQHIAN+TEPI LCI LQI+RD
Sbjct: 95 ILRSNLYGVIDASICVRGPRYVTAQDIISPPYVEIVDTTQHIANLTEPIDLCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ + N QDGSY IDA+ MPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLFIPFLHAEEE +NFE ++++ LPL
Sbjct: 215 LYEASRNLIDLFIPFLHAEEEDINFEENKNRFPLPL 250
[29][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 246 bits (628), Expect = 6e-64
Identities = 119/154 (77%), Positives = 133/154 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC KGPGYVTA D+ILPP V IVDNTQHIA++TEPI CIGLQIER+
Sbjct: 95 VLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEK EILF+EIWTNGSLTPKEA
Sbjct: 155 RGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L++ASRNLIDLFIPFLH EE+ L ++++H V L
Sbjct: 215 LHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
[30][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 246 bits (628), Expect = 6e-64
Identities = 117/156 (75%), Positives = 135/156 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC +GPGY+TA D+ILPPSV I+DNTQHIA +TEPI LCIGL+IER+
Sbjct: 95 VLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHIATLTEPIDLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLI+LFIPFLH EEE EN++H+VTLPL
Sbjct: 215 LHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPL 250
[31][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 246 bits (628), Expect = 6e-64
Identities = 120/154 (77%), Positives = 133/154 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+ NLYG R+A IC KGPGYVTA D+ILPPSV IVDNTQH+A++TEPI LCIGLQIER+
Sbjct: 97 VLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHVASLTEPIDLCIGLQIERN 156
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NF DGSY IDA+FMPVRNANHSIH Y N NEK EILFLEIWTNGSLTPKEA
Sbjct: 157 RGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEA 216
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L+EASRNLIDLFI FLHA+EE L+ EN++H VTL
Sbjct: 217 LHEASRNLIDLFIHFLHAKEENLHLENNQHDVTL 250
[32][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 246 bits (628), Expect = 6e-64
Identities = 117/156 (75%), Positives = 135/156 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC +GPGY+TA D+ILPPSV I+DNTQHIA +TEPI LCIGL+IER+
Sbjct: 95 VLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHIATLTEPIDLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLI+LFIPFLH EEE EN++H+VTLPL
Sbjct: 215 LHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPL 250
[33][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 246 bits (628), Expect = 6e-64
Identities = 118/155 (76%), Positives = 135/155 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASIC +GP VTA D+I PPSV +VD TQHIA++TEPI LCIGLQI+RD
Sbjct: 95 VLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ T N QDGSY IDA+ MPVRNANHSIHSY NGN+K EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLHAEEE +NFE ++++ T+P
Sbjct: 215 LHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVP 249
[34][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 246 bits (628), Expect = 6e-64
Identities = 118/155 (76%), Positives = 135/155 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASIC +GP VTA D+I PPSV +VD TQHIA++TEPI LCIGLQI+RD
Sbjct: 95 VLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ T N QDGSY IDA+ MPVRNANHSIHSY NGN+K EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLHAEEE +NFE ++++ T+P
Sbjct: 215 LHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVP 249
[35][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 246 bits (627), Expect = 8e-64
Identities = 119/156 (76%), Positives = 135/156 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +ASIC KGPG VTA D++LPPSV I+DNTQHIA++ EPI LCIGLQIER+
Sbjct: 95 VLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I + NFQDGSY IDA+FMPVRNANHSIHSY N NEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLIDLF+PFLHAEEE L+ N+++ VT PL
Sbjct: 215 LHEASRNLIDLFLPFLHAEEENLHLGNNKYNVTFPL 250
[36][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 246 bits (627), Expect = 8e-64
Identities = 117/156 (75%), Positives = 134/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSNLYG R+ IC +GPGY+TA D+ILPPSV IVDNTQHIA +TEPI LCIGL+IER+
Sbjct: 95 VLKSNLYGTRNPFICVQGPGYITARDIILPPSVEIVDNTQHIATLTEPINLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEK EILF+EIWTNGSLTPKEA
Sbjct: 155 RGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLI+LFIPFLH EEE EN++H+VTLP+
Sbjct: 215 LYEASRNLINLFIPFLHVEEETFYLENNQHQVTLPV 250
[37][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 244 bits (624), Expect = 2e-63
Identities = 122/159 (76%), Positives = 135/159 (84%), Gaps = 1/159 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC +GPGYVTA D+ILPP V IVDNTQHIA++TEPI LCIGLQI+R+
Sbjct: 69 VLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRN 128
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I NFQDGSY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 129 RGYLIKMPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 188
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL-PLPY 31
L+EA RNLIDLFIPFLH EEE L E+++H V L PL +
Sbjct: 189 LHEACRNLIDLFIPFLHKEEENLPLEDNQHTVPLSPLTF 227
[38][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 244 bits (624), Expect = 2e-63
Identities = 118/154 (76%), Positives = 133/154 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +ASIC KGPGYVTA D+ILPP V IVDNTQHIA++TEPI CIGLQIER+
Sbjct: 95 VLRSNLYGTSEASICVKGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEK EILF+EIWTNGSLTPKEA
Sbjct: 155 RGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L++ASRNLIDLFIPFLH EE+ L ++++H V L
Sbjct: 215 LHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
[39][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 244 bits (624), Expect = 2e-63
Identities = 120/156 (76%), Positives = 135/156 (86%), Gaps = 1/156 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC +GPGYVTA D+ILPP V +VDNTQHIA++TEPI+LCIGLQIER+
Sbjct: 95 VLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELCIGLQIERN 154
Query: 324 RGYRINTLTN-FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKE 148
RGY I T N +DGSY IDA+FMPVRNANHSIHSY NGN+K EILFLEIWTNGSLTPKE
Sbjct: 155 RGYLIKTPNNNSKDGSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWTNGSLTPKE 214
Query: 147 ALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
AL+EASRNLIDLFIPFLH EEE L+ N++H V LP
Sbjct: 215 ALHEASRNLIDLFIPFLHTEEENLHLANNQHMVPLP 250
[40][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 244 bits (623), Expect = 2e-63
Identities = 120/155 (77%), Positives = 134/155 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASIC KGPGYVTA D+I PPSV IVD TQHIA++TEPI LCI LQIER+
Sbjct: 95 VLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEIVDITQHIASLTEPIDLCIELQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ T N Q+ SY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWT+GSLTPKEA
Sbjct: 155 RGYRMKTPNNAQERSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDLFIPFLHAEE+ E+++ +VTLP
Sbjct: 215 LYEASRNLIDLFIPFLHAEEQDTKLEDNQSRVTLP 249
[41][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 244 bits (623), Expect = 2e-63
Identities = 119/154 (77%), Positives = 132/154 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
+L+SNLYG DASIC KGPG VTA D+ILPP V IVDNTQHIA++TEPI CIGLQIER+
Sbjct: 95 ILRSNLYGTSDASICVKGPGSVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L+EASRNLIDLFIPFLH EE+ L ++++H V L
Sbjct: 215 LHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPL 248
[42][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 244 bits (623), Expect = 2e-63
Identities = 116/156 (74%), Positives = 134/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC +GPGY+TA D+ILPPSV I+DNTQHIA + EPI LCIGL+IER+
Sbjct: 95 VLRSNLYGTRNALICVQGPGYITAQDIILPPSVEIIDNTQHIATLMEPIDLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLI+LFIPFLH EEE EN++H+VTLPL
Sbjct: 215 LHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPL 250
[43][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 244 bits (622), Expect = 3e-63
Identities = 120/156 (76%), Positives = 133/156 (85%), Gaps = 1/156 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
+LKSNLYG DASIC +GPGYVTA D+I PP V IVDNTQHIA++ EPI LCIGLQIER+
Sbjct: 95 ILKSNLYGTCDASICIRGPGYVTAQDIISPPYVEIVDNTQHIASLAEPIDLCIGLQIERN 154
Query: 324 RGYRINTLTN-FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKE 148
RGY I T N FQDGSY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKE
Sbjct: 155 RGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKE 214
Query: 147 ALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
AL++ASRNLIDLFIPFLH EEE L+ +++H V LP
Sbjct: 215 ALHQASRNLIDLFIPFLHTEEENLHLADNQHTVPLP 250
[44][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 243 bits (621), Expect = 4e-63
Identities = 118/156 (75%), Positives = 134/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +ASIC KGPG VTA D++LPPSV I+DNTQHIA++ EPI LCIGLQIER+
Sbjct: 95 VLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I + NFQDGSY IDA+FMPVRNANHSIHSY N NEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLIDLF+PFLHAEEE L+ +++ VT PL
Sbjct: 215 LHEASRNLIDLFLPFLHAEEENLHLGKNKYNVTFPL 250
[45][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 243 bits (621), Expect = 4e-63
Identities = 119/154 (77%), Positives = 132/154 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC KGPGYVTA D+ILPP V IVDNTQHIA++TE I CIGLQI+R+
Sbjct: 95 VLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNTQHIASLTETIDFCIGLQIKRN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L+EASRNLIDLFIPFLH EE+ L ++++H V L
Sbjct: 215 LHEASRNLIDLFIPFLHIEEDNLYLQDNQHTVPL 248
[46][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 243 bits (621), Expect = 4e-63
Identities = 116/156 (74%), Positives = 134/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC +GPGY+TA D+ILPPSV I+DNTQHIA +TEPI LCI L+IER+
Sbjct: 95 VLRSNLYGTRNALICVQGPGYITAQDIILPPSVEIIDNTQHIATLTEPIDLCIELKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLI+LFIPFLH EEE EN++H+VTLPL
Sbjct: 215 LHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPL 250
[47][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 243 bits (620), Expect = 5e-63
Identities = 117/156 (75%), Positives = 134/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC +GPGY+TA D+ILPPSV IVDNTQHIA VTE I LCIGL+IER+
Sbjct: 95 VLRSNLYGTRNALICVQGPGYITARDIILPPSVEIVDNTQHIATVTESIDLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NF+D SY IDA+FMPV+NANHSIHSY NGN K EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLI+LFIPFLH EEE + EN++H+VTLPL
Sbjct: 215 LHEASRNLINLFIPFLHVEEETFHLENNQHQVTLPL 250
[48][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 243 bits (620), Expect = 5e-63
Identities = 119/156 (76%), Positives = 133/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC +GP VTA D+I PPSV IVD TQHIAN+TEPI LCIGLQIERD
Sbjct: 95 VLRSNLYGTLDASICVRGPRSVTAQDIISPPSVEIVDTTQHIANLTEPIDLCIGLQIERD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ T N+QDGSY ID +FMPVRNANHSIHSY NG EK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRLKTPNNYQDGSYPIDTVFMPVRNANHSIHSYGNGTEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLI+LFIPFLHAEE+++ E+ E+ T+PL
Sbjct: 215 LYEASRNLINLFIPFLHAEEQEILLEDSENISTVPL 250
[49][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 243 bits (619), Expect = 7e-63
Identities = 120/156 (76%), Positives = 132/156 (84%), Gaps = 1/156 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASIC KGPGYVTA D+I PPSV IVD TQHIA++TEP+ CIGLQIE +
Sbjct: 95 VLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEIVDTTQHIASLTEPVDFCIGLQIESN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ T N Q GSY IDA+FMPVRNANHSIHSY NGNE EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHSYGNGNENQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNF-ENHEHKVTLP 40
LYEASRNLIDLFIPFLHAEE+ N +N ++ VTLP
Sbjct: 215 LYEASRNLIDLFIPFLHAEEQDQNLKDNQKNGVTLP 250
[50][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 243 bits (619), Expect = 7e-63
Identities = 116/155 (74%), Positives = 133/155 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC +GPGY+TA D+ILPPSV IVDNTQHIA +TEPI LCIGL+IER+
Sbjct: 95 VLRSNLYGTRNALICVQGPGYITARDIILPPSVEIVDNTQHIATLTEPIDLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + N +D SY IDA+FMPV+NANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSLKISNNLEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLI+LFIPFLH EEE EN++H+VTLP
Sbjct: 215 LHEASRNLINLFIPFLHVEEETFYLENNQHQVTLP 249
[51][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 242 bits (618), Expect = 9e-63
Identities = 119/152 (78%), Positives = 131/152 (86%)
Frame = -2
Query: 492 NLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 313
NLYG+RDASIC +GP YVTA D+I PPSV IVD TQHIAN+TEPI L I LQI+RDRGYR
Sbjct: 97 NLYGVRDASICVRGPRYVTAQDIISPPSVEIVDTTQHIANLTEPIDLRIELQIKRDRGYR 156
Query: 312 INTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEALYEA 133
IN N QDGSY IDA+ MPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEALYEA
Sbjct: 157 INPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEA 216
Query: 132 SRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
SRNLIDLFIPFLHAEE ++FE ++++ TLPL
Sbjct: 217 SRNLIDLFIPFLHAEEGDIHFEENKNRFTLPL 248
[52][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 242 bits (617), Expect = 1e-62
Identities = 115/155 (74%), Positives = 134/155 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC +GPGY+TA D+ILPPSV I+DNTQHIA +TEPI LCI L+IER+
Sbjct: 95 VLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHIATLTEPIDLCIELKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLI+LFIPFLH EEE + EN++H+VTLP
Sbjct: 215 LHEASRNLINLFIPFLHVEEETVYLENNQHQVTLP 249
[53][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 241 bits (616), Expect = 2e-62
Identities = 115/155 (74%), Positives = 133/155 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC +GPGY+TA D+ILPPSV I+DNTQHIA +TEPI LCI L+IER+
Sbjct: 95 VLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHIATLTEPIDLCIELKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLI+LFIPFLH EEE EN++H+VTLP
Sbjct: 215 LHEASRNLINLFIPFLHVEEETFYLENNQHQVTLP 249
[54][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 241 bits (615), Expect = 2e-62
Identities = 119/156 (76%), Positives = 134/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +ASIC +GP VTA D+ILPP V IVDNTQHIA++TEPI LCIGLQ+ER+
Sbjct: 95 VLRSNLYGTCEASICVRGPRGVTAQDIILPPYVEIVDNTQHIASLTEPIDLCIGLQLERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I NFQDGS+ IDA+FMPVRN NHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDL IPFLHA EE +N E+++HKV+LPL
Sbjct: 215 LYEASRNLIDLLIPFLHA-EENVNLEDNQHKVSLPL 249
[55][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 241 bits (615), Expect = 2e-62
Identities = 117/156 (75%), Positives = 133/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASIC +GP +VTA D+I PPSV I+D TQHIA++TEPI LCIGLQIER+
Sbjct: 95 VLRSNLYGTRDASICVRGPRHVTAQDIISPPSVEIIDTTQHIASLTEPIDLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + T N QDG Y IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYNMKTPKNSQDGRYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLIDLFIPFLHA EE +++++KV LPL
Sbjct: 215 LHEASRNLIDLFIPFLHANEENFILKDNQNKVALPL 250
[56][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 241 bits (614), Expect = 3e-62
Identities = 116/156 (74%), Positives = 133/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V +S+LYG R ASIC +GP YVTA D+I PPSV IVD TQ+IA++TEPI LCI LQIERD
Sbjct: 95 VFRSHLYGTRGASICVRGPRYVTAQDIISPPSVKIVDTTQYIASLTEPIDLCIELQIERD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI T N+QDGSY IDA+ MPVRNANHSIHSY NGNEK EILFLEIWTNGS TPKEA
Sbjct: 155 RGYRIKTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSFTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEE+ +N E+++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEQDINVEDNQNRATAPL 250
[57][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 239 bits (611), Expect = 6e-62
Identities = 114/150 (76%), Positives = 131/150 (87%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DA+IC KGPGYVTA D+I PP V I+DNTQHIA++TEPI+LCIGLQIER+
Sbjct: 95 VLRSNLYGTCDAAICVKGPGYVTAQDIISPPYVEIIDNTQHIASLTEPIELCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NFQDGSY IDA+FMPVRN NHSI+SY GN+K EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLIKTAKNFQDGSYPIDAVFMPVRNVNHSIYSYGTGNDKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEH 55
L+EA+RNLIDLFIPFLH EEE L+ E+++H
Sbjct: 215 LHEAARNLIDLFIPFLHTEEENLDLEDNQH 244
[58][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 239 bits (611), Expect = 6e-62
Identities = 115/156 (73%), Positives = 132/156 (84%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC +GPGY+TA D+ILPPSV I+DNTQHIA +TE I LCIGL+IER+
Sbjct: 95 VLRSNLYGARNAIICVQGPGYITARDIILPPSVEIIDNTQHIATLTESIDLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + L F+D SY IDA+FMPV+NANHSIHSY NGN K EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSLKILNTFEDRSYPIDAVFMPVQNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLI+LFIPFLH EEE EN++H VTLPL
Sbjct: 215 LHEASRNLINLFIPFLHVEEETFYLENNQHHVTLPL 250
[59][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 239 bits (611), Expect = 6e-62
Identities = 115/156 (73%), Positives = 133/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +A IC +GPG +TA D+ILPPSV I+DNTQHIA +TEPI LCIGLQIER+
Sbjct: 95 VLRSNLYGTCNALICVQGPGSITARDIILPPSVEIIDNTQHIATLTEPIDLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + +F+DGSY IDA+FMPV+NANHSIHSY GNEK EILFLEIWTNG+LTPKEA
Sbjct: 155 RGYSLKMPNHFEDGSYPIDALFMPVQNANHSIHSYGTGNEKQEILFLEIWTNGNLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLI+LFIPFLH EEE EN++HKVTLPL
Sbjct: 215 LHEASRNLINLFIPFLHVEEETFYLENNQHKVTLPL 250
[60][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 239 bits (610), Expect = 8e-62
Identities = 117/156 (75%), Positives = 134/156 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+LYG RDASIC +GP YVTA D+I PPSV IVD TQHIA++TEPI LCI LQIERD
Sbjct: 95 VLRSHLYGTRDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ T N+QDGSY IDA+ MPVRNANHSIHSY N NEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMKTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNRNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLIDLFIPFLHAEE+ + E++ ++ T+PL
Sbjct: 215 LHEASRNLIDLFIPFLHAEEQDIVLEDNPNRFTVPL 250
[61][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 239 bits (610), Expect = 8e-62
Identities = 120/156 (76%), Positives = 133/156 (85%), Gaps = 1/156 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DA IC KGPGYVTA D++LPPSV IVDNTQHIA++TEPI L IGLQIER
Sbjct: 95 VLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIGLQIERS 154
Query: 324 RGYRINTLTNFQDGS-YNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKE 148
RGY I T FQDG+ Y IDA+FMPVRNANHSI SY NGNEK EILFLEIWTNGSLTPKE
Sbjct: 155 RGYNIKTPNTFQDGNCYPIDAVFMPVRNANHSIQSYGNGNEKQEILFLEIWTNGSLTPKE 214
Query: 147 ALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
AL+EASR+LIDLFIPFL AE+E L EN+++KVTLP
Sbjct: 215 ALHEASRSLIDLFIPFLQAEDENLPLENNQYKVTLP 250
[62][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 239 bits (609), Expect = 1e-61
Identities = 114/155 (73%), Positives = 132/155 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R+ASIC +GP Y+TA D+I PPSV IVD TQHIAN+TEPI LCI LQI+RD
Sbjct: 95 VLRSNLYGVRNASICVRGPKYITAQDIISPPSVEIVDTTQHIANLTEPINLCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ + + DGSY ID + MPVRNANHSIHSY NGNEK EILF+EIWTNGSLTPKEA
Sbjct: 155 RGYRMKSTNDSHDGSYPIDIVSMPVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDL IPFLHAEEE +NF+ +E++ LP
Sbjct: 215 LYEASRNLIDLLIPFLHAEEEDMNFKENENRWNLP 249
[63][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 239 bits (609), Expect = 1e-61
Identities = 113/155 (72%), Positives = 132/155 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+A IC +GPGY+TA D+ILPP+V I+DNTQHIA +TEPI LCI L+IER+
Sbjct: 95 VLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + NF+D SY IDA+FMPV NANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L++ASRNLI+LFIPFLH EEE EN++H+VTLP
Sbjct: 215 LHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 249
[64][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 238 bits (607), Expect = 2e-61
Identities = 118/156 (75%), Positives = 134/156 (85%), Gaps = 2/156 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSNLYG RDASIC +GP YVTA D+I PPSV IVD TQHIA++TEPI LCI LQIERD
Sbjct: 95 VLKSNLYGTRDASICVRGPKYVTAQDIISPPSVEIVDTTQHIASLTEPINLCIELQIERD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ N+QDGSY IDA+ MPVRNANHSIHSY +GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMKAPNNYQDGSYPIDAVSMPVRNANHSIHSYGSGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEE--KLNFENHEHKVTL 43
L+EASRNLIDLFIPFLHAEE+ LN E+++++ T+
Sbjct: 215 LHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNRFTV 250
[65][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 237 bits (605), Expect = 3e-61
Identities = 116/156 (74%), Positives = 132/156 (84%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+ASIC KGP +TA D+ILP SV IVD TQHIA +TEP+ L IGLQI+RD
Sbjct: 95 VLRSNLYGTREASICVKGPKTITAEDIILPASVEIVDTTQHIATLTEPLDLYIGLQIQRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ N QDGSY IDA+FMPVRNANHSI+SY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMRPTNNSQDGSYPIDAVFMPVRNANHSIYSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLIDLFIPFLHAEE+ +N E ++ + TLPL
Sbjct: 215 LHEASRNLIDLFIPFLHAEEKDINLEENKSRFTLPL 250
[66][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 237 bits (605), Expect = 3e-61
Identities = 117/156 (75%), Positives = 132/156 (84%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC +GP YVTA D+ILPPSV IVD TQHIAN+TE + LCI LQIERD
Sbjct: 95 VLRSNLYGTLDASICIRGPRYVTAQDIILPPSVEIVDATQHIANLTERVDLCIKLQIERD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + T N +DGSY IDAIFMPVRNANHS+HSY NGNEK EILF+EIWTNGSLTPKEA
Sbjct: 155 RGYSMKTPHNDEDGSYPIDAIFMPVRNANHSVHSYGNGNEKQEILFIEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLFIPFLHAEE +++ E++ + V L L
Sbjct: 215 LYEASRNLIDLFIPFLHAEEREIHLEDNANGVPLAL 250
[67][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 237 bits (605), Expect = 3e-61
Identities = 116/155 (74%), Positives = 133/155 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC KGP +TA D+I PPSV IVD TQHIA++TEP LCIGLQIER+
Sbjct: 95 VLRSNLYGTCDASICVKGPINITAKDIISPPSVEIVDTTQHIASLTEPFDLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ T Q+GSY IDA+FMPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMKTPNKAQNGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLHAEE+ + E+++++VTLP
Sbjct: 215 LHEASRNLIDLFIPFLHAEEQDIILEDNQNRVTLP 249
[68][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 237 bits (605), Expect = 3e-61
Identities = 114/154 (74%), Positives = 130/154 (84%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V +SNLYG DASIC +GPGYVTA D++LPP V IVDNTQHIA + EPI LCI L+IER+
Sbjct: 95 VFRSNLYGTCDASICVRGPGYVTAQDIVLPPYVEIVDNTQHIARLMEPINLCIRLEIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NFQDGSY IDA+FMP+RNAN+SIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLIKTPQNFQDGSYPIDAVFMPIRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L++ASRNLIDLFIPFLH EE+ + EN++H V L
Sbjct: 215 LHQASRNLIDLFIPFLHMEEQNSHLENNQHTVPL 248
[69][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 237 bits (604), Expect = 4e-61
Identities = 119/158 (75%), Positives = 134/158 (84%), Gaps = 3/158 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC +GPGYVTA D+ILPP V +VDNTQHIA++TEPI+L IGLQIER
Sbjct: 95 VLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELHIGLQIERS 154
Query: 324 RGYRINT-LTNFQDGSYNIDAIFMPVRNANHSIHSY--VNGNEKPEILFLEIWTNGSLTP 154
RGY I T NFQDGSY IDA+FMP+RNANHSIHSY NGN+K EILFLEIWTNGSLTP
Sbjct: 155 RGYLIKTPNNNFQDGSYPIDAVFMPIRNANHSIHSYGNGNGNDKQEILFLEIWTNGSLTP 214
Query: 153 KEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
KEAL+EASRNLIDLFIPFLH EEE L+ +++H V LP
Sbjct: 215 KEALHEASRNLIDLFIPFLHTEEENLHLADNQHMVPLP 252
[70][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 237 bits (604), Expect = 4e-61
Identities = 115/156 (73%), Positives = 131/156 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +A IC +GPGY+TA D+ILPPSV I+DNTQHIA +TEPI LCIGLQIER+
Sbjct: 95 VLRSNLYGTCNALICVQGPGYITARDIILPPSVEIMDNTQHIATLTEPIDLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + F+DGSY IDA+FMPV+NANHSIHSY GNE EILFLEIWTNG+LTPKEA
Sbjct: 155 RGYSLKMPNPFEDGSYPIDALFMPVQNANHSIHSYGTGNENQEILFLEIWTNGNLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
L+EASRNLI+LFIPFLH EEE EN+E KVTLPL
Sbjct: 215 LHEASRNLINLFIPFLHVEEETFYLENNEDKVTLPL 250
[71][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 236 bits (602), Expect = 6e-61
Identities = 117/156 (75%), Positives = 130/156 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+I PPSV IVD TQHIAN+TEPI LCI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIISPPSVEIVDTTQHIANLTEPIDLCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI+S N NEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHTEPRKNSQDGSYPIDAVSMPVRNVNYSIYSCGNENEKYEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLFIPFLHAEEE NFE ++++ TLPL
Sbjct: 215 LYEASRNLIDLFIPFLHAEEEDTNFEENKNRFTLPL 250
[72][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 236 bits (602), Expect = 6e-61
Identities = 119/159 (74%), Positives = 132/159 (83%), Gaps = 1/159 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC +GPGYVTA D+ILPP V IVDNTQHIA++TEPI LCIGLQIER+
Sbjct: 95 VLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + N QDGSY IDA+FMPVRNANHSIHSY +GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLMKMPHNSQDGSYPIDAVFMPVRNANHSIHSYGSGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL-PLPY 31
L+EA RNLIDLFIPFLH EEE E++ H V L PL +
Sbjct: 215 LHEACRNLIDLFIPFLHKEEETSPLEDNHHTVPLSPLTF 253
[73][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 236 bits (602), Expect = 6e-61
Identities = 114/155 (73%), Positives = 132/155 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R+ASIC +GP YVTA D+I PPSV IVD TQHIA++TEPI LCI LQI+RD
Sbjct: 95 VLRSNLYGTRNASICVRGPRYVTAQDIISPPSVEIVDTTQHIASLTEPIDLCIELQIQRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ T +Q+GSY IDA+ MPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRMKTPNKYQNGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLHAEEE + E++ ++ +P
Sbjct: 215 LHEASRNLIDLFIPFLHAEEEGIRLEDNPNRFNIP 249
[74][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 236 bits (601), Expect = 8e-61
Identities = 116/156 (74%), Positives = 130/156 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S YG DASIC +GPG VTA D+I PP V IVD TQHIAN+TEPI L I LQ+ER+
Sbjct: 95 VLRSTFYGTCDASICVRGPGGVTAQDIISPPYVEIVDTTQHIANLTEPIDLRIELQLERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI T NFQDGSY ID +FMPVRN NHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYRIKTPNNFQDGSYPIDVVFMPVRNVNHSIHSYSNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLFIPFL+AE+E + E+++ +VTLPL
Sbjct: 215 LYEASRNLIDLFIPFLYAEKENFHLEDNQDRVTLPL 250
[75][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 234 bits (596), Expect = 3e-60
Identities = 115/155 (74%), Positives = 130/155 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +ASIC +GPGYVTA D+ILPP V I+DNTQHIA++TEPI+L IGLQIE++
Sbjct: 95 VLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEILDNTQHIASLTEPIELVIGLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDL IPFLH +EE LN E ++H V LP
Sbjct: 213 LYEASRNLIDLLIPFLHTKEENLNLEGNQHMVPLP 247
[76][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 234 bits (596), Expect = 3e-60
Identities = 117/154 (75%), Positives = 132/154 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASI KGPG+VTA D+ILPP V IVD+TQHIA +TEPI LCIGL+IER+
Sbjct: 95 VLRSNLYGTCDASISIKGPGHVTAKDIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NF+DGSY IDA+FMPVRNANHSIHSY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYFIKTHPNFEDGSYPIDAVFMPVRNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L+EASRNLIDLFIPFLH EEE L+ E+ +H ++L
Sbjct: 213 LHEASRNLIDLFIPFLHMEEENLHLEDADHTISL 246
[77][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 233 bits (595), Expect = 4e-60
Identities = 117/154 (75%), Positives = 131/154 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASI FKGPGYVTA D+ILPP V IVD+TQHIA +TEPI LCIGL+IER+
Sbjct: 95 VLRSNLYGTCDASISFKGPGYVTAEDIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NF+DGSY IDA+FMPV+NANHSIHSY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L+EASRNLIDLFIPFLH E+E L E+ +H + L
Sbjct: 213 LHEASRNLIDLFIPFLHMEKENLPLEDADHTIPL 246
[78][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 233 bits (595), Expect = 4e-60
Identities = 117/154 (75%), Positives = 131/154 (85%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASI FKGPGYVTA D+ILPP V IVD+TQHIA +TEPI LCIGL+IER+
Sbjct: 95 VLRSNLYGTCDASISFKGPGYVTAEDIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I T NF+DGSY IDA+FMPV+NANHSIHSY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L+EASRNLIDLFIPFLH E+E L E+ +H + L
Sbjct: 213 LHEASRNLIDLFIPFLHMEKENLPLEDADHTIPL 246
[79][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 233 bits (594), Expect = 5e-60
Identities = 115/155 (74%), Positives = 131/155 (84%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +ASIC +GPGYVTA D+ILPP V IVDNTQHIA++TEPI+L IGLQIE++
Sbjct: 95 VLRSNLYGTYEASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIELVIGLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDL IPFLH +EE LN E+++H V LP
Sbjct: 213 LHEASRNLIDLLIPFLHTKEENLNLEDNQHIVPLP 247
[80][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 233 bits (593), Expect = 7e-60
Identities = 114/155 (73%), Positives = 130/155 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +ASIC +GPGYVTA D+ILPP V IVDNTQHIA +TEPI+L IGLQIE++
Sbjct: 95 VLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEIVDNTQHIATLTEPIELVIGLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDL IPFLH +EE LN E+++H + LP
Sbjct: 213 LHEASRNLIDLLIPFLHTKEENLNLEDNQHMIPLP 247
[81][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 232 bits (591), Expect = 1e-59
Identities = 113/156 (72%), Positives = 130/156 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPKYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ + N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELIKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[82][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 231 bits (589), Expect = 2e-59
Identities = 116/155 (74%), Positives = 129/155 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG R A IC +GPGYVTA D+I PPSV IVDNTQHIA + EPI LCIGLQIER+
Sbjct: 95 VLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY +GSY IDA+FMPVRNANHSIHSY NG+E+ EILFLEIWTNGSLTPKEA
Sbjct: 155 RGY---------NGSYPIDAVFMPVRNANHSIHSYGNGSERQEILFLEIWTNGSLTPKEA 205
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDLFIPFLHAEEE L+ E ++HK TLP
Sbjct: 206 LHEASRNLIDLFIPFLHAEEETLHLEYNQHKGTLP 240
[83][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 231 bits (588), Expect = 3e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICIKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[84][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 231 bits (588), Expect = 3e-59
Identities = 114/155 (73%), Positives = 131/155 (84%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +ASIC +GPGYVTA D+ILPP V IVDNTQHIA++TEPI+L IGLQIE++
Sbjct: 95 VLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIELVIGLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EASRNLIDL IPFLH +EE L+ E+++H V LP
Sbjct: 213 LHEASRNLIDLLIPFLHTKEENLSLEDNQHIVPLP 247
[85][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 231 bits (588), Expect = 3e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVXMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[86][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[87][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[88][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[89][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[90][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[91][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 130/156 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD +Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTSQPIANLTEPIDFCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[92][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[93][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[94][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[95][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[96][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPL 250
[97][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[98][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDRAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[99][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPL 250
[100][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[101][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 230 bits (587), Expect = 4e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPL 250
[102][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 230 bits (586), Expect = 5e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDXAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[103][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 230 bits (586), Expect = 5e-59
Identities = 112/155 (72%), Positives = 129/155 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V +S+LYG DASIC +GP +VTA D+I PPSV IVD TQHIA +TEP+ LCI L+IER
Sbjct: 95 VFRSDLYGTLDASICVRGPRHVTAQDIISPPSVEIVDTTQHIAILTEPVDLCIELKIERG 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + T N+QDGSY IDA+ MPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYCMRTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDLFIPFLHAEE+ +N E++ + T+P
Sbjct: 215 LYEASRNLIDLFIPFLHAEEQDINIEDNLKRATVP 249
[104][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 230 bits (586), Expect = 5e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[105][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 230 bits (586), Expect = 5e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNLNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[106][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 230 bits (586), Expect = 5e-59
Identities = 113/156 (72%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[107][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 229 bits (583), Expect = 1e-58
Identities = 112/156 (71%), Positives = 128/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD TQ IAN+ EPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTTQPIANLREPIDFCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PF+H EEE +FE +++++T PL
Sbjct: 215 LYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTPPL 250
[108][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 229 bits (583), Expect = 1e-58
Identities = 112/155 (72%), Positives = 128/155 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDLF+PFLHAEEE +FE ++++ T P
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPP 249
[109][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 229 bits (583), Expect = 1e-58
Identities = 112/155 (72%), Positives = 128/155 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDLF+PFLHAEEE +FE ++++ T P
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPP 249
[110][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 228 bits (582), Expect = 1e-58
Identities = 111/156 (71%), Positives = 128/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD TQ IAN+ EP+ CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTTQPIANLREPVDFCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PF+H EEE +FE +++++T PL
Sbjct: 215 LYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTPPL 250
[111][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 228 bits (582), Expect = 1e-58
Identities = 112/156 (71%), Positives = 128/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV VD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVETVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[112][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 228 bits (581), Expect = 2e-58
Identities = 112/156 (71%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI L+I+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDMAQPIANLTEPIDFCIDLRIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[113][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 228 bits (581), Expect = 2e-58
Identities = 112/156 (71%), Positives = 128/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+ EPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLXEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPL 250
[114][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 228 bits (581), Expect = 2e-58
Identities = 113/156 (72%), Positives = 128/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAESMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[115][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 228 bits (580), Expect = 2e-58
Identities = 113/156 (72%), Positives = 127/156 (81%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[116][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 227 bits (579), Expect = 3e-58
Identities = 112/156 (71%), Positives = 128/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICIKGPRYITAQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NG EK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGIEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[117][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 227 bits (578), Expect = 4e-58
Identities = 112/156 (71%), Positives = 128/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ M VRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMXVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[118][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 227 bits (578), Expect = 4e-58
Identities = 111/156 (71%), Positives = 127/156 (81%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD TQ IAN+ EP+ CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTTQPIANLREPVDFCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
R Y N QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RAYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE +FE +++++T PL
Sbjct: 215 LYEASRNLIDLFLPFLHTEEEGTSFEENKNRLTPPL 250
[119][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 226 bits (577), Expect = 5e-58
Identities = 112/156 (71%), Positives = 129/156 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASI KGP Y+TA D+ILPPSV IVD +Q IAN+TEPI CI LQI+RD
Sbjct: 100 VLRSNLYGVRDASISVKGPRYITAQDIILPPSVEIVDTSQPIANLTEPIDFCIELQIKRD 159
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 160 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 219
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 220 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 255
[120][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 226 bits (576), Expect = 7e-58
Identities = 111/156 (71%), Positives = 126/156 (80%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+ EPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPIANLREPIDFCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PF+H EEE +FE ++++T PL
Sbjct: 215 LYEASRNLIDLFLPFIHTEEEGTSFEESKNRLTPPL 250
[121][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 226 bits (575), Expect = 9e-58
Identities = 111/156 (71%), Positives = 127/156 (81%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP +TA D+ILPPSV +VD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRCITAQDIILPPSVEVVDTAQPIANLTEPIDFCIQLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTGFEENKNRFTPPL 250
[122][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 226 bits (575), Expect = 9e-58
Identities = 112/154 (72%), Positives = 129/154 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASI KGPGYVTA D+ILPP V +VD+TQHIA + EPI LCIGL+IER+
Sbjct: 95 VLRSNLYGTCDASISIKGPGYVTAEDIILPPHVEVVDSTQHIAWLMEPIDLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY + T NF+DGSY IDA+FMPV+NANHSIHSY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYFLKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L+EASRNLIDLFIPFLH E+E L+ E+ + + L
Sbjct: 213 LHEASRNLIDLFIPFLHIEKENLHLEDADRTIPL 246
[123][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 225 bits (574), Expect = 1e-57
Identities = 111/156 (71%), Positives = 127/156 (81%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY+ N+QDGSY I + MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYQTELRKNYQDGSYPIXXVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[124][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 225 bits (574), Expect = 1e-57
Identities = 115/157 (73%), Positives = 129/157 (82%), Gaps = 2/157 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASI +GP VTA D+I PPSV +VD TQHIA++TEPI LCIGLQIERD
Sbjct: 95 VLRSNLYGTCDASIFVRGPRCVTAQDIISPPSVKMVDTTQHIASLTEPIDLCIGLQIERD 154
Query: 324 RGYRINTLTNFQDGSYNI--DAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPK 151
RGYR+ T N QDGSY I +A+ MPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPK
Sbjct: 155 RGYRMKTPNNDQDGSYPIPIEAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPK 214
Query: 150 EALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
EAL+EAS NLIDLFIPFLH EEE +N E+ ++ TLP
Sbjct: 215 EALHEASHNLIDLFIPFLHGEEEDINLEDSLNRGTLP 251
[125][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 224 bits (572), Expect = 2e-57
Identities = 112/156 (71%), Positives = 126/156 (80%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEPI CI LQI+RD
Sbjct: 95 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDMAQPIANLTEPIDFCIELQIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFYCGNGNEKHEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLHAEEE +FE ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250
[126][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 224 bits (572), Expect = 2e-57
Identities = 114/154 (74%), Positives = 128/154 (83%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASI KGPGYVTA D+ILPP V IVD+TQHIA +TEPI IGL+IER+
Sbjct: 95 VLRSNLYGTCDASISIKGPGYVTAEDIILPPHVEIVDSTQHIAWLTEPINFFIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
GY I T NF+DGSY IDA+FMPVRNANHSI+SY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 HGYFIKTHANFEDGSYPIDALFMPVRNANHSINSY--GNEKQEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
L+EASRNLIDLFIPFLH EEE L+ E+ +H + L
Sbjct: 213 LHEASRNLIDLFIPFLHMEEENLHLEDADHTIPL 246
[127][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 224 bits (570), Expect = 3e-57
Identities = 110/160 (68%), Positives = 127/160 (79%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V +S+LYG DASIC +GP +VTA D+I PPSV IVD TQHIA +TEP+ LCI L+IER
Sbjct: 95 VFRSDLYGTLDASICVRGPRHVTAQDIISPPSVEIVDTTQHIAVLTEPVDLCIELKIERG 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY T N+QDGSY IDA+ MPVRNANHSIHSY NGNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYCTRTQNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPLPYLS 25
LYEASRNLIDLFIPFLHAEE+ +N ++ +P+ +
Sbjct: 215 LYEASRNLIDLFIPFLHAEEQDINRNMEDNLKRASVPFFA 254
[128][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 223 bits (568), Expect = 6e-57
Identities = 113/153 (73%), Positives = 124/153 (81%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG ASIC +GPGYVTA D+ILPP V I DNTQHIA +TEPI CIGL+IER
Sbjct: 80 VLRSNLYGTCGASICARGPGYVTAQDIILPPCVEIGDNTQHIARLTEPISFCIGLEIERS 139
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I + FQD SY IDA+FMPVRN NHSIHSY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 140 RGYLIKSPHIFQDRSYPIDAVFMPVRNVNHSIHSY--GNEKQEILFLEIWTNGSLTPKEA 197
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVT 46
L+EASRNLIDLFIPFLH EEE L EN++ V+
Sbjct: 198 LHEASRNLIDLFIPFLHKEEENLPLENNQDTVS 230
[129][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 216 bits (550), Expect = 7e-55
Identities = 108/155 (69%), Positives = 125/155 (80%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
+++S+LYG RDA IC +GP YVTA D+I PPSV IVD TQHIA++TEPI CIGL+IER+
Sbjct: 95 IVRSDLYGTRDAFICVRGPKYVTAQDIISPPSVKIVDTTQHIASITEPINFCIGLEIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR T T QD SY IDA+ MPVRNAN+SI Y N NEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYR--TRTTNQDASYPIDAVSMPVRNANYSIQCYGNENEKQEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDLFIPFLHAEE L+ ++ ++ T P
Sbjct: 213 LYEASRNLIDLFIPFLHAEERDLHLDDDQNIFTAP 247
[130][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 214 bits (546), Expect = 2e-54
Identities = 107/156 (68%), Positives = 123/156 (78%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+RDASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP+ I L+I+RD
Sbjct: 75 VLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDMAQPIANLTEPMDFRIELRIKRD 134
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEA
Sbjct: 135 RGYHTEVRKNAQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEA 194
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 195 LYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPL 230
[131][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 214 bits (544), Expect = 3e-54
Identities = 106/152 (69%), Positives = 126/152 (82%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSNLYG DAS+ KGP YVTA D+ILPP V IVD+TQHIA++TEPI LCIGL+IER+
Sbjct: 95 VLKSNLYGTCDASLYIKGPRYVTAQDIILPPHVEIVDSTQHIASLTEPINLCIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I FQ+ +Y++DA+FMPV N NHSI+SY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYLIKAHPPFQNETYSLDAVFMPVLNVNHSIYSY--GNEKKEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKV 49
L+EA++NL+DLFIPFL EEE LN E+ EH++
Sbjct: 213 LHEAAQNLMDLFIPFLQMEEENLNLEDAEHQI 244
[132][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 213 bits (542), Expect = 6e-54
Identities = 106/156 (67%), Positives = 122/156 (78%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R+ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 75 VLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRD 134
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEA
Sbjct: 135 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEA 194
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 195 LYEASRNLIDLFLPFLHTEEEGTRFQENQNRFTSPL 230
[133][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 213 bits (541), Expect = 8e-54
Identities = 106/156 (67%), Positives = 122/156 (78%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R+ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 75 VLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRD 134
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEA
Sbjct: 135 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEA 194
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 195 LYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPL 230
[134][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 212 bits (539), Expect = 1e-53
Identities = 106/156 (67%), Positives = 122/156 (78%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R+ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 75 VLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPEDFRIELRIKRD 134
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEA
Sbjct: 135 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEA 194
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 195 LYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPL 230
[135][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 211 bits (536), Expect = 3e-53
Identities = 105/156 (67%), Positives = 121/156 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 183 VLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRD 242
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEA
Sbjct: 243 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEA 302
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 303 LYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPL 338
[136][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 211 bits (536), Expect = 3e-53
Identities = 105/156 (67%), Positives = 121/156 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 95 VLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPL 250
[137][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 211 bits (536), Expect = 3e-53
Identities = 105/156 (67%), Positives = 121/156 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 204 VLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRD 263
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEA
Sbjct: 264 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEA 323
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 324 LYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPL 359
[138][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 211 bits (536), Expect = 3e-53
Identities = 105/156 (67%), Positives = 121/156 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 75 VLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFHIELRIKRD 134
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEA
Sbjct: 135 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEA 194
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 195 LYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPL 230
[139][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 211 bits (536), Expect = 3e-53
Identities = 105/156 (67%), Positives = 121/156 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 95 VLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 215 LYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPL 250
[140][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 209 bits (533), Expect = 6e-53
Identities = 104/156 (66%), Positives = 121/156 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 204 VLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRD 263
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI + NGN + EILFLEIWTNGSLTPKEA
Sbjct: 264 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNARYEILFLEIWTNGSLTPKEA 323
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 324 LYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPL 359
[141][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 208 bits (530), Expect = 1e-52
Identities = 104/156 (66%), Positives = 120/156 (76%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 75 VLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRD 134
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTP EA
Sbjct: 135 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPMEA 194
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPL 37
LYEASRNLIDLF+PFLH EEE F+ ++++ T PL
Sbjct: 195 LYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPL 230
[142][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 208 bits (530), Expect = 1e-52
Identities = 110/159 (69%), Positives = 123/159 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG DASIC KGP +VTA D+ILPP V IVDNTQHIA +TEPI IGL+IER+
Sbjct: 95 VLRSNLYGTCDASICIKGPRHVTAQDIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY +F DG Y IDA+FMPV+NANHSIHSY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYFNKVDLHFDDGIYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPLPYL 28
L+EA+R LID FIPF H EEE L + EH T+PL L
Sbjct: 213 LHEAARILIDFFIPFFHMEEENLYLADAEH--TIPLSSL 249
[143][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 205 bits (522), Expect = 1e-51
Identities = 106/154 (68%), Positives = 124/154 (80%), Gaps = 3/154 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+LYG RDASIC +GP VTA D+ILPPSV IVDNTQHI +TEPI+ C+ LQIER+
Sbjct: 95 VLRSSLYGTRDASICVRGPRDVTAQDIILPPSVSIVDNTQHIVTLTEPIEFCVALQIERN 154
Query: 324 RGY--RINTLTNFQD-GSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTP 154
RGY RI T N D Y IDA+FMPV+N NHSIHSY NG+ E+LF EIWTNGSLTP
Sbjct: 155 RGYSLRIPTPNNSHDERGYPIDAVFMPVKNVNHSIHSYENGSH--EMLFFEIWTNGSLTP 212
Query: 153 KEALYEASRNLIDLFIPFLHAEEEKLNFENHEHK 52
KEAL EASR LI+LFIPFLHAEEEK +FEN++++
Sbjct: 213 KEALREASRKLINLFIPFLHAEEEKPHFENNQNE 246
[144][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 204 bits (520), Expect = 2e-51
Identities = 107/160 (66%), Positives = 125/160 (78%), Gaps = 3/160 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNL G RDASIC +GP VTA D+ILP S IVDNTQHI +TEPI CIGLQI+R+
Sbjct: 95 VLRSNLDGTRDASICVRGPRDVTAQDIILPNSAAIVDNTQHIVTLTEPIDFCIGLQIDRN 154
Query: 324 RGY--RINTLTNFQDG-SYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTP 154
RGY +I TNF D Y IDA+F+PV+N NHSIHSY NG+ E+LFLEIWTNGSLTP
Sbjct: 155 RGYSRKIPMPTNFHDDRGYPIDAVFLPVKNVNHSIHSYENGSH--EMLFLEIWTNGSLTP 212
Query: 153 KEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPLP 34
KEAL EASR LI+LFIPFLHAEEE +FEN++++ T LP
Sbjct: 213 KEALREASRKLINLFIPFLHAEEENFHFENNQNEHTDELP 252
[145][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 204 bits (519), Expect = 3e-51
Identities = 105/156 (67%), Positives = 123/156 (78%), Gaps = 3/156 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASIC +GP VTA D+ILPPSV IVDNTQHI +TEPI C+GLQIER+
Sbjct: 95 VLRSNLYGTRDASICVRGPRDVTAQDIILPPSVAIVDNTQHIVTLTEPIDFCVGLQIERN 154
Query: 324 RGY--RINTLTN-FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTP 154
RGY +I TN D Y IDA+FMPV+N NHSIH+Y NG+ E+LF EIWTNGSLTP
Sbjct: 155 RGYSMKIPMPTNSHDDRGYPIDAVFMPVKNVNHSIHAYENGSH--EMLFFEIWTNGSLTP 212
Query: 153 KEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVT 46
KEAL EASR LI+LFIPFLHAEEE + EN++++ T
Sbjct: 213 KEALREASRKLINLFIPFLHAEEENSHLENNQNQHT 248
[146][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 204 bits (519), Expect = 3e-51
Identities = 108/159 (67%), Positives = 123/159 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLY DASIC KGP +VTA D+ILPP V IVDNTQHIA +TEPI IGL+IER+
Sbjct: 95 VLRSNLYESCDASICIKGPRHVTAQDIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY +F DGSY IDA+FMPV+NANHSIHSY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPLPYL 28
L+E++R LID FIPF EEE L + +H T+PLP L
Sbjct: 213 LHESARILIDFFIPFFQMEEENLYLADAKH--TIPLPPL 249
[147][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 204 bits (518), Expect = 4e-51
Identities = 105/155 (67%), Positives = 120/155 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLY DASIC KGP +VTA D+ILPP V IVDNTQHIA +TEPI IGL+IER+
Sbjct: 95 VLRSNLYESCDASICIKGPRHVTAQDIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY +F DGSY IDA+FMPV+NANHSIHSY GNEK EILFLEIWTNGSLTPKEA
Sbjct: 155 RGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+E++R LID FIPF EEE L + +H + LP
Sbjct: 213 LHESARILIDFFIPFFQMEEENLYLADAKHTIXLP 247
[148][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 203 bits (516), Expect = 6e-51
Identities = 102/145 (70%), Positives = 113/145 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG+R ASIC KGP Y+TA D+ILPPSV IVD Q IAN+TEP I L+I+RD
Sbjct: 204 VLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRD 263
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY N QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEA
Sbjct: 264 RGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEA 323
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNF 70
LYEASRNLIDLF+PFLH EEE F
Sbjct: 324 LYEASRNLIDLFLPFLHTEEEGTRF 348
[149][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 201 bits (511), Expect = 2e-50
Identities = 104/160 (65%), Positives = 123/160 (76%), Gaps = 3/160 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+LYG RDASIC +GP VTA D+ILP S IVDNTQHI +TEPI C+GLQIER+
Sbjct: 95 VLRSHLYGTRDASICVRGPRDVTAQDIILPTSATIVDNTQHIVTITEPIDFCVGLQIERN 154
Query: 324 RGY--RINTLTNFQDG-SYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTP 154
RGY +I LTN D Y ID++FMPV+N NHSIHSY NG +LFLEIWTNGSLTP
Sbjct: 155 RGYFIQIPMLTNLHDDRGYPIDSVFMPVKNVNHSIHSYENGIH--AMLFLEIWTNGSLTP 212
Query: 153 KEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPLP 34
KEAL EASR L +LFIPFLHAEE+ +FEN++++ T LP
Sbjct: 213 KEALREASRKLSNLFIPFLHAEEQNFHFENNQNEHTDELP 252
[150][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 200 bits (509), Expect = 4e-50
Identities = 103/155 (66%), Positives = 122/155 (78%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG +ASIC KGPGYVTA D+I PP V IVDNTQHIA++TEPI+L I LQIE++
Sbjct: 95 VLRSNLYGTCEASICVKGPGYVTAQDIISPPYVEIVDNTQHIASLTEPIELIIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
R ++ FQDGSY I A+ MPVR+ N+SIHS +GN K EILFLEIWTNGSLTPKEA
Sbjct: 155 RFIQLKERNTFQDGSYAIGAVLMPVRHMNYSIHS--SGNGKQEILFLEIWTNGSLTPKEA 212
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L+EA RNLIDLFIPFLH EE N EN++ ++ P
Sbjct: 213 LHEACRNLIDLFIPFLHKEEG--NLENNQDRIPFP 245
[151][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 199 bits (507), Expect = 7e-50
Identities = 99/155 (63%), Positives = 123/155 (79%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YG R+ASIC GP VTA D+ILPPSV I+D TQHIA++T+ I I L IE+D
Sbjct: 95 VLRSDPYGTREASICIVGPRNVTAQDIILPPSVRIIDATQHIASLTKSITFDIRLWIEKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI + N+QDG + IDA+FMPVRNAN+SIHSY NGN+ EILFLEIWTNGSL P+EA
Sbjct: 155 RGYRIQSPKNYQDGIFPIDAVFMPVRNANYSIHSYGNGNDIQEILFLEIWTNGSLAPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LY ASRNLIDLFIPFL AEE+ ++ ++++ +P
Sbjct: 215 LYRASRNLIDLFIPFLRAEEQNIDGMDNQNGSNMP 249
[152][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 198 bits (504), Expect = 1e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITFDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[153][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 197 bits (502), Expect = 3e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[154][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 197 bits (502), Expect = 3e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[155][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 197 bits (502), Expect = 3e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[156][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 197 bits (502), Expect = 3e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPKNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[157][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 197 bits (502), Expect = 3e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[158][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 197 bits (500), Expect = 4e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[159][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 197 bits (500), Expect = 4e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[160][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 197 bits (500), Expect = 4e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[161][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 197 bits (500), Expect = 4e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[162][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 197 bits (500), Expect = 4e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[163][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 196 bits (498), Expect = 7e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEH-KVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNMLPFP 252
[164][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 196 bits (498), Expect = 7e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEH-KVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNMLPFP 252
[165][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 196 bits (498), Expect = 7e-49
Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEH-KVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNMLPFP 252
[166][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 196 bits (498), Expect = 7e-49
Identities = 99/158 (62%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+ N+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSSNNYQDGIFPIDAVFMPVRDVNYSIHSYGSGNEIQEVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[167][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 196 bits (498), Expect = 7e-49
Identities = 104/162 (64%), Positives = 120/162 (74%), Gaps = 5/162 (3%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASIC +GP VTA D+ILPPS IVDNTQHI +TEPI C+GL+IER
Sbjct: 95 VLRSNLYGTRDASICVRGPRDVTAQDIILPPSTAIVDNTQHIFTLTEPIDFCVGLKIERG 154
Query: 324 RGYRIN----TLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLT 157
RGY I T D +Y IDA+FMPVRN NHSIHSY G+ E+LFLEIWTNGSLT
Sbjct: 155 RGYSIKIPMPTDLFHHDSAYPIDAVFMPVRNVNHSIHSYERGSH--EMLFLEIWTNGSLT 212
Query: 156 PKEALYEASRNLIDLFIPFLHAEEEKLNF-ENHEHKVTLPLP 34
PKEAL EASR LI+L +PFLHAEEE EN++++ T LP
Sbjct: 213 PKEALREASRKLINLLMPFLHAEEENFYLVENNQNQDTEELP 254
[168][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 195 bits (496), Expect = 1e-48
Identities = 99/158 (62%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V +S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[169][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 195 bits (496), Expect = 1e-48
Identities = 99/158 (62%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V +S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[170][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 195 bits (496), Expect = 1e-48
Identities = 99/158 (62%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V +S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[171][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 195 bits (495), Expect = 2e-48
Identities = 96/155 (61%), Positives = 122/155 (78%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YG+R+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I L+IE++
Sbjct: 95 VLRSDSYGVREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIKLRIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDLFIPFLH EE+ ++ N+ +P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNRKGSNMP 249
[172][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 194 bits (494), Expect = 2e-48
Identities = 99/158 (62%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGI +ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIXEASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[173][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 194 bits (492), Expect = 4e-48
Identities = 98/158 (62%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V +S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+ N+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDVNYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[174][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 193 bits (491), Expect = 5e-48
Identities = 98/158 (62%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V +S+ YGIR+ASI GP VTA D+ILPPSV +D TQHIA +T+ I I LQIE++
Sbjct: 95 VFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKTIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LYEASRNLIDLFIPFLH EE+ ++ N + LP P
Sbjct: 215 LYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFP 252
[175][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 193 bits (491), Expect = 5e-48
Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 3/156 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+LYG RDASIC +GP VT+ D+ILP IVDNTQHI +TEPI C+GLQIER+
Sbjct: 95 VLRSHLYGTRDASICVRGPRDVTSQDIILPTFATIVDNTQHIVTLTEPIDFCVGLQIERN 154
Query: 324 RGY--RINTLTNFQDG-SYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTP 154
RGY +I L+N D Y IDA+FMPV+N NHSIHSY NG +LFLEIWTNGSLTP
Sbjct: 155 RGYFIQIPMLSNLHDDRGYPIDAVFMPVKNVNHSIHSYENGIH--AMLFLEIWTNGSLTP 212
Query: 153 KEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVT 46
KEAL ASR LI+LFIPFLHAEE+ +FEN++++ T
Sbjct: 213 KEALRGASRKLINLFIPFLHAEEQNCHFENNQNEHT 248
[176][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 193 bits (490), Expect = 6e-48
Identities = 96/155 (61%), Positives = 121/155 (78%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I L+IE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLRIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
LYEASRNLIDL IPFLH EE+ ++ N+ +P
Sbjct: 215 LYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSNMP 249
[177][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 192 bits (489), Expect = 8e-48
Identities = 95/148 (64%), Positives = 119/148 (80%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I L+IE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITFDIRLRIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENH 61
LYEASRNLID FIPFLH EE+ ++ N+
Sbjct: 215 LYEASRNLIDFFIPFLHGEEQNIDGINN 242
[178][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 192 bits (488), Expect = 1e-47
Identities = 95/148 (64%), Positives = 119/148 (80%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA +T+ I I L+IE++
Sbjct: 95 VLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITFDIRLRIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENH 61
LYEASRNLIDL IPFLH EE+ ++ N+
Sbjct: 215 LYEASRNLIDLLIPFLHGEEQNIDGMNN 242
[179][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 191 bits (486), Expect = 2e-47
Identities = 96/155 (61%), Positives = 120/155 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR ASIC GP VTA D+ILPPSV I+D TQHIA +T+ I I LQIE++
Sbjct: 95 VLRSDSYGIRGASICIVGPRNVTAQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKN 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE E+LFLEIWTNG LTP+EA
Sbjct: 155 RGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
L EASR LI+LFIPFLH EE+ ++ N+ +P
Sbjct: 215 LSEASRILIELFIPFLHGEEQNIDGMNNRKGSNMP 249
[180][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 191 bits (485), Expect = 2e-47
Identities = 105/164 (64%), Positives = 119/164 (72%), Gaps = 7/164 (4%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SNLYG RDASIC +GP VTA D+ILPPS IVDNTQHI +TEPI C+ L+IER
Sbjct: 95 VLRSNLYGTRDASICVRGPRDVTAQDIILPPSTAIVDNTQHIVTLTEPIDFCVELKIERG 154
Query: 324 RGYRIN----TLTNFQDGSY--NIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGS 163
RGY I T D Y IDA+FMPVRN NHSI+SY G+ EILFLEIWTNGS
Sbjct: 155 RGYSIKIPMPTNPFHHDSGYPIPIDAVFMPVRNVNHSIYSYKRGSR--EILFLEIWTNGS 212
Query: 162 LTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENHEHKVTLPLP 34
LTPKEAL EASR LI+LFIPFLHAEEE EN++++ T LP
Sbjct: 213 LTPKEALREASRKLINLFIPFLHAEEENFYLLENNQNQHTEELP 256
[181][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 183 bits (464), Expect = 6e-45
Identities = 94/144 (65%), Positives = 112/144 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ASI GP VTA D+ILPPSV I+D TQHIA++ E I I QI +D
Sbjct: 95 VLQSDPYGIREASIYSVGPRDVTAQDIILPPSVRIIDTTQHIASLKESITSDIRSQIGKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI + N +DG ++ DA+ MPVRNAN+SIHSY NGNE EILF EIWTNGSL P EA
Sbjct: 155 RGYRIQSPNNSRDGIFSTDAVSMPVRNANYSIHSYGNGNEMQEILFSEIWTNGSLAPGEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN 73
LYEASRNLIDLFIPF+ AEE+ ++
Sbjct: 215 LYEASRNLIDLFIPFMRAEEQNID 238
[182][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 180 bits (456), Expect = 5e-44
Identities = 91/152 (59%), Positives = 115/152 (75%), Gaps = 1/152 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSN Y + A + GP +TA D+ILPPSV I+D TQ+IA +T+PI L I L+I++D
Sbjct: 95 VLKSNSYETQKAFLSILGPKKITAQDIILPPSVKIIDTTQYIATITKPIHLDIELEIDKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
GYRI DG ++IDAIFMP+RNAN+S+HS+ N N+ EILF+EIWTNGS+TPKEA
Sbjct: 155 CGYRIXDSVKSIDGYFSIDAIFMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAE-EEKLNFENHEHK 52
LYEASR+LIDLFIPFLH E +E +N E+K
Sbjct: 215 LYEASRSLIDLFIPFLHTEKKETINGLKTEYK 246
[183][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 178 bits (451), Expect = 2e-43
Identities = 88/142 (61%), Positives = 111/142 (78%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ Y + A I GP VTA D+ILPPSV I+D TQ+IA VT+ I L I L+IE+D
Sbjct: 95 VLRSDSYETQKAFISILGPKKVTAQDIILPPSVKIIDTTQYIATVTKAIHLDIELKIEKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
GYRI DG++ +DA+FMP+RN N+S+HS+ NGNE EILFLEIWTNGS+TPKEA
Sbjct: 155 FGYRIEDPIKSADGNFPVDAVFMPIRNVNYSVHSFENGNETQEILFLEIWTNGSVTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEK 79
LYEASR+LI+LFIPFLHAE+++
Sbjct: 215 LYEASRSLINLFIPFLHAEKKE 236
[184][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 177 bits (448), Expect = 5e-43
Identities = 88/143 (61%), Positives = 111/143 (77%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SN Y + A I GP VTA D+ILPPSV I+D TQ+IA +T+ I L I L+IE+D
Sbjct: 95 VLRSNSYETQKAFISILGPKKVTAQDIILPPSVKIIDTTQYIATLTKTIHLDIELEIEKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
GYRI DG + IDAIFMP+RNAN+S+HS+ + N+ EILF+EIWTNGS+TPKEA
Sbjct: 155 CGYRIQDSIKSTDGHFPIDAIFMPIRNANYSVHSFEHENKTQEILFIEIWTNGSITPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKL 76
LYEASR+LIDLFIPFLHAE++++
Sbjct: 215 LYEASRSLIDLFIPFLHAEKKEI 237
[185][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 176 bits (447), Expect = 6e-43
Identities = 88/142 (61%), Positives = 109/142 (76%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSN + A I GP +TA D+ILPPSV I+D TQ+IA +T+PI L I L+IE+D
Sbjct: 95 VLKSNSSETQKAFISILGPKKITAQDIILPPSVKIIDTTQYIATITKPIHLDIELEIEKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
GYRI DG + IDAIFMP+RNAN+S+HS+ N N+ EILF+EIWTNGS+TPKEA
Sbjct: 155 CGYRIQDSVKSIDGYFPIDAIFMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEK 79
LYEASR+LIDLFIPFLH E+++
Sbjct: 215 LYEASRSLIDLFIPFLHPEKKE 236
[186][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 172 bits (436), Expect = 1e-41
Identities = 83/149 (55%), Positives = 111/149 (74%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ Y + A I GP +TA D++LPPSV +D++QHIA +T+ I L I ++I++D
Sbjct: 95 VLRSDSYETQKAYISITGPKDITAEDILLPPSVQAIDDSQHIATITKDITLDIEIEIQKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI Q G + IDA+FMP+R AN+S+HS+ N + EILF+EIWT+GSLTPKEA
Sbjct: 155 RGYRIQDSKESQAGEFFIDAVFMPIRKANYSVHSFGNNKKFQEILFIEIWTDGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHE 58
LYEASRNLIDLF+PFLH EEE++ + E
Sbjct: 215 LYEASRNLIDLFLPFLHTEEEEIISDRDE 243
[187][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 169 bits (429), Expect = 7e-41
Identities = 83/147 (56%), Positives = 109/147 (74%)
Frame = -2
Query: 498 KSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRG 319
KSN + A + GP VTA D+I PPSV ++D TQ+IA +T+ I L I L+IE+D G
Sbjct: 100 KSNSCETQKAFLSIFGPKEVTARDIIFPPSVEVIDTTQYIATLTKAIHLDIELKIEKDCG 159
Query: 318 YRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEALY 139
YR DG +++DA+F P+RNAN+S+HS+ N NE EILF+EIWTNGS+TPKEALY
Sbjct: 160 YRTQDSIKSADGYFSVDAVFTPIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALY 219
Query: 138 EASRNLIDLFIPFLHAEEEKLNFENHE 58
EASR+LIDLFIPFLHAE+E++ + +E
Sbjct: 220 EASRSLIDLFIPFLHAEKEEVMHDKNE 246
[188][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 169 bits (428), Expect = 1e-40
Identities = 87/154 (56%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SN + A I GP +TA D+ILPPSV I+D Q+IA +T+ IQL I L+IE+D
Sbjct: 95 VLESNSSETQKAFISILGPKKITAQDIILPPSVKIIDGKQYIATLTKAIQLDIELEIEKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
GYRI + + IDAIFMP+RNAN+S+HS+ N N+ E+LF+EIWTNGS+TPK+A
Sbjct: 155 YGYRIQNSNKSTNSHFFIDAIFMPIRNANYSVHSFENENKTQEMLFIEIWTNGSITPKDA 214
Query: 144 LYEASRNLIDLFIPFLHAE-EEKLNFENHEHKVT 46
LYEASR+LIDLFIPFLHAE E +N +E+K++
Sbjct: 215 LYEASRSLIDLFIPFLHAERREIINELENEYKLS 248
[189][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 168 bits (426), Expect = 2e-40
Identities = 80/144 (55%), Positives = 108/144 (75%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSN Y ++ASI GP VTA D++LP SV ++D TQHIA +T+ + I L I +D
Sbjct: 95 VLKSNSYKTQEASISILGPKRVTAEDIVLPSSVEVIDATQHIATITKAVYFNIKLGIRKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI ++DG++ ++A F P+RNAN+S+HS+ N EK EILF+E+WTNGSLTPKEA
Sbjct: 155 RGYRIENPVKYEDGNFAVNAAFTPIRNANYSVHSFENEKEKQEILFIEVWTNGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN 73
L EAS++LI+LFIP LH ++E+ N
Sbjct: 215 LREASQSLINLFIPLLHEKKEREN 238
[190][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 168 bits (425), Expect = 2e-40
Identities = 93/170 (54%), Positives = 112/170 (65%), Gaps = 11/170 (6%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ YGIR+ SI GP VTA D++LPPSV I+D TQHIAN+ + I L I LQIE+
Sbjct: 95 VLRSDAYGIREGSIHVVGPKKVTAQDIMLPPSVRIIDTTQHIANINKSITLDISLQIEKG 154
Query: 324 RGYRINTLTNFQDGS----------YNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIW 175
RGY I N+ + IDA F PV+N N+SIHSY + NE EILFLEIW
Sbjct: 155 RGYIIQNPNNYNPKDEIFAIDAAFVFPIDAAFAPVQNVNYSIHSYWSENETQEILFLEIW 214
Query: 174 TNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENH-EHKVTLPLPYL 28
TNG L PKEALYEASRNLID F+PFL+A+EE + N +T LP L
Sbjct: 215 TNGGLAPKEALYEASRNLIDFFLPFLNAKEENSDGTNSLSDDITPSLPIL 264
[191][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 167 bits (423), Expect = 4e-40
Identities = 81/141 (57%), Positives = 106/141 (75%)
Frame = -2
Query: 498 KSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRG 319
KSN + A + GP VTA D++ PPSV ++D TQ+IA +T+ I L I L+IE+D G
Sbjct: 100 KSNSCETQKAFLSIFGPKEVTARDIVFPPSVEVIDTTQYIATLTKAIHLDIELKIEKDCG 159
Query: 318 YRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEALY 139
YR DG +++DA+F P+RNAN+S+HS+ N NE EILF+EIWTNGS+TPKEALY
Sbjct: 160 YRTQDSIKSADGYFSVDAVFTPIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALY 219
Query: 138 EASRNLIDLFIPFLHAEEEKL 76
EASR+LIDLFIPFLHAE+E++
Sbjct: 220 EASRSLIDLFIPFLHAEKEEV 240
[192][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 155 bits (391), Expect = 2e-36
Identities = 84/151 (55%), Positives = 107/151 (70%), Gaps = 2/151 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ Y + ASI GP VTA D++LP SV I+D +QHIA +T I L + L+IERD
Sbjct: 95 VLQSDSYETQKASISILGPRDVTAGDILLPTSVKIIDASQHIATITTAIPLDVELRIERD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
GYR L Q G + IDA+F P+RNAN+SIHS+ + N+ EILFLE+WTNGSLTP A
Sbjct: 155 CGYRTLNLKESQSGEFFIDALFTPIRNANYSIHSFESNNKVREILFLEVWTNGSLTPGAA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEK--LNFENHE 58
L EASR+LIDLFI FL+ E+E+ EN+E
Sbjct: 215 LSEASRDLIDLFIIFLNMEKEESIKEIENNE 245
[193][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 154 bits (390), Expect = 2e-36
Identities = 75/155 (48%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ G + A + GP VTA D+ LPPSV ++D++Q+I +T+PI + I L IE D
Sbjct: 95 VLRSDSDGNQKAILSVTGPKRVTAGDISLPPSVKVIDDSQYIVTITQPISVNIELNIECD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
GYRI +L ++DG + +DA+FMPVRN N+S+H + +G E EILF+E+WTNGSLTP EA
Sbjct: 155 CGYRIESLNEYRDGEFPVDAVFMPVRNVNYSVHPFGSGKEMREILFIEVWTNGSLTPTEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKL-NFENHEHKVTL 43
+ +AS++ IDL PFLH + E + +FE++ +L
Sbjct: 215 ISKASKSSIDLLSPFLHTKHEDIPDFESNRDSSSL 249
[194][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 152 bits (384), Expect = 1e-35
Identities = 77/145 (53%), Positives = 105/145 (72%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS + + A I GP +TA D+ P + I+ Q+IA + + I L I L IE+D
Sbjct: 95 VLKSESFEPQKAYISVLGPKKITAQDIKGPSCIKIMIIAQYIATLNKDILLEIELNIEKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYRI L +Q+G + +DA+FMP+RNAN+S+HS+ + + EILFLEIWT+GSLTPKEA
Sbjct: 155 RGYRIENLQKYQEGLFPVDAVFMPIRNANYSVHSFESEKKIKEILFLEIWTDGSLTPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNF 70
LYEASRNLIDLFIP +++E+++ NF
Sbjct: 215 LYEASRNLIDLFIPLINSEKKEKNF 239
[195][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 150 bits (379), Expect = 5e-35
Identities = 78/143 (54%), Positives = 100/143 (69%), Gaps = 2/143 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS LYGI ASIC GP VTA D+ILP S+ I+D TQHIA++T+ + + L IER+
Sbjct: 96 VLKSELYGIHKASICTVGPRNVTAQDIILPSSIKIIDGTQHIASLTKSVPFNVMLTIERN 155
Query: 324 RGYRINTLTN--FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPK 151
+GY I + ++ ++G + IDA MPVRN N SIHSY + N+ E+L EIWTNG LTP+
Sbjct: 156 QGYAIPSQSSRRHKNGLFPIDAPCMPVRNVNFSIHSYKSENDIREMLIFEIWTNGGLTPR 215
Query: 150 EALYEASRNLIDLFIPFLHAEEE 82
EA YEA LIDL +P LH EE+
Sbjct: 216 EAFYEACWKLIDLIVPLLHMEED 238
[196][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 148 bits (374), Expect = 2e-34
Identities = 75/157 (47%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V +S+ ++A + GP VTA D LPPSV I+D++Q+I +T+PI + I +IE+D
Sbjct: 95 VPRSDSNDSKEAFLSVTGPKRVTAGDTSLPPSVKIIDDSQYIVTITQPISVNIESRIEKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
GYRI ++DG + +DA+ MPVRN N+S+H + +G E EI F+EIWTNGS TP EA
Sbjct: 155 CGYRIEEFNGYRDGEFPVDAVPMPVRNVNYSVHPFGSGREMREISFIEIWTNGSPTPNEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKL-NFENHEHKVTLPL 37
L EAS+NLIDL IPFLH + E + +FE+ + L +
Sbjct: 215 LCEASKNLIDLLIPFLHMKHEDVPHFEDEQDSSDLTI 251
[197][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 148 bits (373), Expect = 2e-34
Identities = 73/144 (50%), Positives = 102/144 (70%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
+L+S+ + A IC GP VTA D+ + ++DNTQ++A +T I L I L IE+D
Sbjct: 96 ILRSDSPEPQKAYICVSGPSEVTARDIQGSSLIHVIDNTQYVATITGKISLDIELDIEKD 155
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGYR+ +++G + IDA+FMP+RNAN+S+HS+ + + EIL LEIWTNGSLTP++A
Sbjct: 156 RGYRMENSRKYREGFFPIDAVFMPIRNANYSVHSFGSREKTKEILLLEIWTNGSLTPEKA 215
Query: 144 LYEASRNLIDLFIPFLHAEEEKLN 73
LYEASRNLIDLFIP ++ E+ N
Sbjct: 216 LYEASRNLIDLFIPSMNPGGEEKN 239
[198][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 148 bits (373), Expect = 2e-34
Identities = 78/153 (50%), Positives = 109/153 (71%), Gaps = 2/153 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V++S+ + A I GPG VTA D++LPPS+ + D TQHIA +T+ + L I L +E+
Sbjct: 207 VIRSDSDEPQKAIISAIGPGPVTAGDIVLPPSLEVTDPTQHIAYLTKEVSLDIELDVEKG 266
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE-KPEILFLEIWTNGSLTPKE 148
GYR+ T DG + ID++FMPVRNAN+S+HSY + + EILFLEIWTNGS+TP+E
Sbjct: 267 CGYRMGDHTKSGDGRFYIDSVFMPVRNANYSVHSYESEPDVTQEILFLEIWTNGSITPEE 326
Query: 147 ALYEASRNLIDLFIPFLHAEEEKL-NFENHEHK 52
AL+EA+R LIDLF+PFLH +++++ N HK
Sbjct: 327 ALHEAARCLIDLFLPFLHPKKKEVTNSATKMHK 359
[199][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 145 bits (366), Expect = 1e-33
Identities = 76/147 (51%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Frame = -2
Query: 480 IRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTL 301
I++A + GP VTA DL LPP V +DN+Q+IA +T+PI L I L+IE+D GYRI L
Sbjct: 104 IQEAFLSVTGPKEVTAGDLSLPPGVEAIDNSQYIATITQPISLTIELEIEKDCGYRIENL 163
Query: 300 TNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEALYEASRNL 121
G + IDA+FMPVRN N+SIH + +G EILF+EIWTNGSLTP EAL +AS L
Sbjct: 164 AKSGKGQFPIDAVFMPVRNVNYSIHLFGSGRATQEILFIEIWTNGSLTPHEALRKASEKL 223
Query: 120 IDLFIPFLHAEEEKLN-FENHEHKVTL 43
+DL FL+ ++ FEN E + L
Sbjct: 224 MDLLTTFLYVRGGDVSLFENGEDSLDL 250
[200][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 144 bits (363), Expect = 3e-33
Identities = 70/151 (46%), Positives = 106/151 (70%), Gaps = 2/151 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS + A I GP VTA D+ LP SV ++D QHIA +T+ ++L I L+IE+D
Sbjct: 98 VLKSKSSEAQKAFISIVGPRRVTAQDIELPTSVEVIDPMQHIATITKKVKLNIELKIEKD 157
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEK--PEILFLEIWTNGSLTPK 151
GYR + ++DG++ +DA+F P+R+ N+SIH + + ++ E+L EIW+NGS+TP+
Sbjct: 158 SGYRRQNIVEYKDGNFTVDAVFTPIRSVNYSIHCFESHDKSIMKEMLLYEIWSNGSITPE 217
Query: 150 EALYEASRNLIDLFIPFLHAEEEKLNFENHE 58
EA+YEASR+ I+LF+PFL AE+EK +F+ +
Sbjct: 218 EAIYEASRSSINLFLPFLQAEKEKEDFKGED 248
[201][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 142 bits (357), Expect = 2e-32
Identities = 71/154 (46%), Positives = 102/154 (66%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S LYGI +ASIC GP VTA D+ILP S+ I+D+TQHIA++T+ I + L+IE+
Sbjct: 96 VLRSELYGIHEASICTVGPKNVTAQDIILPSSIQIIDDTQHIASLTKRIPFNVTLKIEKK 155
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
+ Y I + +D + ID + +PV+N N SIHSY + + E+L EIWTNG LTP+E
Sbjct: 156 KRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIHSYKSSDNIQEMLIFEIWTNGGLTPRET 215
Query: 144 LYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTL 43
+YEA +L+DL IP L E+ N + + ++L
Sbjct: 216 IYEACWSLLDLIIPLLCVEQNIKNSQKKPNPLSL 249
[202][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 127 bits (318), Expect = 5e-28
Identities = 70/140 (50%), Positives = 93/140 (66%), Gaps = 3/140 (2%)
Frame = -2
Query: 504 VLKSNLYGI-RDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIER 328
VLK+N + ++A I GP VTA D++LPPSV +D TQHIA +T I IGL++ER
Sbjct: 95 VLKTNPFSAAQEAHIPIVGPRKVTAQDIVLPPSVGTMDPTQHIATITRKIHSSIGLRVER 154
Query: 327 DRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVN--GNEKPEILFLEIWTNGSLTP 154
G+R + +Q GS DA+FMP+R+AN+SIH + G E+L LE T+GS TP
Sbjct: 155 GCGFRKRNMIEYQKGSLPPDAVFMPIRHANYSIHRLGSHGGGIMKEMLLLEARTDGSPTP 214
Query: 153 KEALYEASRNLIDLFIPFLH 94
+EA+YEASRNL +LF PF H
Sbjct: 215 REAIYEASRNLANLFSPFPH 234
[203][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 122 bits (305), Expect = 2e-26
Identities = 61/143 (42%), Positives = 92/143 (64%), Gaps = 7/143 (4%)
Frame = -2
Query: 465 ICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQD 286
I KGP +TA D+ + P + I+D+ Q IA++TEPI + L IE+ G+R+ T
Sbjct: 105 IFVKGPKKITASDIQIEPCIEILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISK 164
Query: 285 GSYNIDAIFMPVRNANHSIHSYVN-GNEKPEILFLEIWTNGSLTPKEALYEASRNLIDLF 109
S++IDAIFMP+RN N+SIH G+ K E+L LEIWTNGS+TPKEA ++AS ++++F
Sbjct: 165 DSFSIDAIFMPIRNVNYSIHPVEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIF 224
Query: 108 IPFLHAEEEKL------NFENHE 58
+ ++ + ++ NFE E
Sbjct: 225 LSLSNSSDNQIQEKSTKNFEEKE 247
[204][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 120 bits (302), Expect = 4e-26
Identities = 63/136 (46%), Positives = 92/136 (67%)
Frame = -2
Query: 495 SNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGY 316
SN + + A I GP V A D++ PPS+V+ D +Q+IA VT I + +++E+D GY
Sbjct: 199 SNTHEPQKAFISVMGPRQVIAGDILCPPSLVVPDPSQNIALVTAAIPFNVEIEVEKDVGY 258
Query: 315 RINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEALYE 136
RI +G + ID++FMPV AN+S+HS+ + EILFLEI+TNGS++P+EAL E
Sbjct: 259 RIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIE 318
Query: 135 ASRNLIDLFIPFLHAE 88
A+R+LIDL +P L +E
Sbjct: 319 AARSLIDLLLPLLESE 334
[205][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 120 bits (302), Expect = 4e-26
Identities = 63/136 (46%), Positives = 92/136 (67%)
Frame = -2
Query: 495 SNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGY 316
SN + + A I GP V A D++ PPS+V+ D +Q+IA VT I + +++E+D GY
Sbjct: 286 SNTHEPQKAFISVMGPRQVIAGDILCPPSLVVPDPSQNIALVTAAIPFNVEIEVEKDVGY 345
Query: 315 RINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEALYE 136
RI +G + ID++FMPV AN+S+HS+ + EILFLEI+TNGS++P+EAL E
Sbjct: 346 RIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIE 405
Query: 135 ASRNLIDLFIPFLHAE 88
A+R+LIDL +P L +E
Sbjct: 406 AARSLIDLLLPLLESE 421
[206][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 118 bits (295), Expect = 3e-25
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 5/165 (3%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V + L+GI A I GP VTA D+ILPP + IVD TQHIA++T+PI L + L+IE++
Sbjct: 99 VFRCELHGIHKAYIYTVGPKNVTAQDIILPPFIQIVDGTQHIASITKPIHLHVTLKIEKN 158
Query: 324 RG---YRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKP--EILFLEIWTNGSL 160
G I+ +T + + +MPVR+ ++++ Y + + +IL E+WTNG L
Sbjct: 159 WGETTESIHPITKYFTRYIPTEIFYMPVRSVTYNVYFYKDEYDIHIYDILIFELWTNGEL 218
Query: 159 TPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLPLPYLS 25
TPKEALYEA LIDL IP L + L+ E K ++PLP +S
Sbjct: 219 TPKEALYEACWRLIDLIIPLL--DVPLLHVEGSGVKESIPLPIVS 261
[207][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 115 bits (287), Expect = 2e-24
Identities = 55/143 (38%), Positives = 89/143 (62%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
+L S+ GI + + GP V A DL LP + IV+ Q+IA V +PI + + I++
Sbjct: 95 ILSSSFSGIFEGFLSVVGPKTVLASDLNLPSFIKIVNPDQYIATVNKPINFNLQIYIQKG 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
+GY + + + G + +D +F+P+R+ N+SIHS+ + E L +E+WTNGS+ PKEA
Sbjct: 155 KGYSLKNPISIKQGFFLVDPVFIPIRSVNYSIHSFEDEKATKEFLIVEVWTNGSIEPKEA 214
Query: 144 LYEASRNLIDLFIPFLHAEEEKL 76
+ EAS NL++LF P + E ++L
Sbjct: 215 IKEASYNLVNLFTPLVSQEYQQL 237
[208][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 111 bits (278), Expect = 2e-23
Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 1/140 (0%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V KS+ ++ + F GPG VTA + LPP V +VDNTQ+IA + P + I + +E
Sbjct: 92 VFKSDTLERQEGILLFNGPGIVTAQHIKLPPVVQVVDNTQYIARLEMPTSIEIHITLENT 151
Query: 324 RGYR-INTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKE 148
+ +NT+ + G + +DA PVRN N+SIHS G+ + E+L LE+WTNGSLTP+E
Sbjct: 152 KTCTSLNTMPTTK-GRFILDAALKPVRNMNYSIHSLGEGDMRQEMLVLEVWTNGSLTPQE 210
Query: 147 ALYEASRNLIDLFIPFLHAE 88
+ +AS+NL DL P L E
Sbjct: 211 VISQASQNLNDLLKPLLKVE 230
[209][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 109 bits (273), Expect = 9e-23
Identities = 52/84 (61%), Positives = 65/84 (77%)
Frame = -2
Query: 381 IANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEK 202
IA + +PI LCIGLQI+R+ Y + NFQDGSY ID +FM V+NANH+IH Y N NE+
Sbjct: 65 IARLKKPIDLCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNANHNIHFYGNVNER 124
Query: 201 PEILFLEIWTNGSLTPKEALYEAS 130
EILFL++WTN +LTPKEA +EAS
Sbjct: 125 QEILFLKLWTNKNLTPKEAFHEAS 148
[210][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 109 bits (273), Expect = 9e-23
Identities = 59/141 (41%), Positives = 85/141 (60%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
++K+ + + I GP VTA D+ L ++ I + HIA +T+PI+ + L I +
Sbjct: 97 IIKNKICEFQKCLISIIGPKKVTAADIELSQNITISNPYHHIATITKPIRFQVELIINKG 156
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEA 145
RGY I + QDG + +DA+F PVRN N SIH N E+ E L LEIWTNG++TP +A
Sbjct: 157 RGYLIQDGNDVQDGYFPVDALFNPVRNVNFSIH---NLAEQQEALILEIWTNGAITPLDA 213
Query: 144 LYEASRNLIDLFIPFLHAEEE 82
L + S NLI LF+P E++
Sbjct: 214 LRQGSENLIHLFLPPFGLEDD 234
[211][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 105 bits (261), Expect = 2e-21
Identities = 53/100 (53%), Positives = 69/100 (69%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKSN Y + A I GP +TA D+ILPPSV I+D TQ+IA +T+ I L I +IE+D
Sbjct: 95 VLKSNSYETQKAFISILGPKKITAQDIILPPSVKIIDTTQYIATLTKAIHLDIESEIEKD 154
Query: 324 RGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE 205
GYRI DG + +DA+FMP+RNAN+SIHS+ N N+
Sbjct: 155 CGYRIQDSKKSTDGLFFVDAVFMPIRNANYSIHSFENKNK 194
[212][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 100 bits (249), Expect = 5e-20
Identities = 44/61 (72%), Positives = 55/61 (90%)
Frame = -2
Query: 261 FMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 82
FMP+RNAN+S+HS+ N N+ EILF+EIWTNGS+TPKEALYEASR+L DLFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
Query: 81 K 79
+
Sbjct: 61 E 61
[213][TOP]
>UniRef100_Q33616 Orf protein (Fragment) n=1 Tax=Musa balbisiana RepID=Q33616_MUSBA
Length = 67
Score = 99.0 bits (245), Expect = 2e-19
Identities = 46/60 (76%), Positives = 52/60 (86%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SN+YG+RDASIC +GP YVTA D+I PPSV IVD TQHIAN+TEPI LCIGLQI RD
Sbjct: 8 VLRSNIYGVRDASICARGPKYVTAQDIISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRD 67
[214][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 93.6 bits (231), Expect = 7e-18
Identities = 58/132 (43%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
Frame = -2
Query: 471 ASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNF 292
ASI +GPG VTA + P S++ VD Q IA + QLCI L I + ++ T T
Sbjct: 114 ASIFAQGPGVVTAEHIKFPSSILAVDPDQSIATLLNETQLCIELFIRQGIAKQL-TRTKK 172
Query: 291 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEALYEASRNLIDL 112
+ IDA F PV+ AN SIHS + ++L LEIWTN +LTP EALY+A +L++L
Sbjct: 173 NHQGFFIDANFTPVQKANFSIHSVGDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNL 232
Query: 111 F----IPFLHAE 88
F P LH E
Sbjct: 233 FHQISPPLLHKE 244
[215][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 91.3 bits (225), Expect = 3e-17
Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+SN + + +GPG VTA L LP V +++ HIA + E L + I R
Sbjct: 104 VLRSNAPDTQVGRLVAQGPGEVTAEKLQLPSEVEVINPRHHIATLAEGAILEMEFMIGRG 163
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVNGNE-KPEILFLEIWTNGSLT 157
RGYR ++ + + + ID++FMPVR N+++ + G + + L LEIWTNGSLT
Sbjct: 164 RGYRAVDYSDSKSMAIDFLQIDSVFMPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLT 223
Query: 156 PKEALYEASRNLIDLFIP 103
P+EAL +A+R L+ LF P
Sbjct: 224 PQEALSQAARILVGLFSP 241
[216][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 91.3 bits (225), Expect = 3e-17
Identities = 61/152 (40%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS ++ + KGP VTA + LP V IV+ +IA +T L I +IE
Sbjct: 86 VLKSKTNDLKFGRLKIKGPAVVTANCIQLPSEVEIVNPNHYIATITTSNVLEIEFKIESG 145
Query: 324 RGYRI--NTLTNFQDGSYNIDAIFMPVRNANHSIHS-YVNGNEKPEILFLEIWTNGSLTP 154
GY++ T IDAIFMPV+ + I + Y N N+ E LFL+IWTNGS++P
Sbjct: 146 TGYKLAGQTFCKKSQDYLQIDAIFMPVQKVDFKIENIYDNSNDLTERLFLDIWTNGSMSP 205
Query: 153 KEALYEASRNLIDLFIPFLHAEEEKLNFENHE 58
+EA+ ASR +I F L E KL E E
Sbjct: 206 EEAVSSASRFIISFFSSLL---ENKLPQETKE 234
[217][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 89.7 bits (221), Expect = 1e-16
Identities = 57/144 (39%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Frame = -2
Query: 477 RDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLT 298
++A I GPG V A D + P S+ I+ QH A VT I+ G ++E GYR +
Sbjct: 103 QEAHIPIVGPGKVAARDTVPPSSIGIIYPAQHAATVTRKIRSSTGSRVEGGCGYRRRNMV 162
Query: 297 NFQDGSYNIDAIFMPVRNANHSIHSYV--NGNEKPEILFLEIWTNGSLTPKEALYEASRN 124
+Q GS DA+ MP+RNAN+SIH +G E+ E T+GS TP EA YEASR+
Sbjct: 163 EYQKGSPPPDAVSMPIRNANYSIHRLESHSGGIMKEMPPPEARTDGSPTPGEATYEASRD 222
Query: 123 LIDLFIPFLHAEEEKLNFENHEHK 52
+LF P +N H K
Sbjct: 223 SANLFSP---VPRSSINASTHGKK 243
[218][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 89.4 bits (220), Expect = 1e-16
Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
Frame = -2
Query: 456 KGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSY 277
+GP VTA LP V +VD Q+IA ++ L + Q+E+ GYR + +
Sbjct: 102 QGPATVTAGHFDLPSEVEVVDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAV 161
Query: 276 N---IDAIFMPVRNANHSIH-SYVNGNEKPEILFLEIWTNGSLTPKEALYEASRNLIDLF 109
+ IDA+FMPVR N+++ + V G+ + + L L+IWTNGSLTP+EAL +A+ L+DLF
Sbjct: 162 DFLQIDAVFMPVRKVNYTVEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLF 221
Query: 108 IP 103
+P
Sbjct: 222 VP 223
[219][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 89.0 bits (219), Expect = 2e-16
Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
+LKS + + GP V A LP V IVD Q++A + E +L + ++E+
Sbjct: 86 ILKSYTNQTQIGRLVATGPATVVAAQFDLPSEVEIVDRNQYVATLAEGAKLEMEFRVEKG 145
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVN-GNEKPEILFLEIWTNGSLT 157
+GYR + + S + ID+IFMPV N+S+ + + + L LEIWTNGS+
Sbjct: 146 KGYRAIDRSKDEATSLDFLQIDSIFMPVTKVNYSVEDIRSESGQARDRLLLEIWTNGSIN 205
Query: 156 PKEALYEASRNLIDLFIPF--LHAEEEKLNFENHE 58
PKEAL +A+ L++LF P L+A E NF++ E
Sbjct: 206 PKEALSQAADMLVNLFNPLKDLNALESSSNFDDQE 240
[220][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 88.6 bits (218), Expect = 2e-16
Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 5/139 (3%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S I+ + +GP VTA DL LP V +V +IA + E QL + QIER
Sbjct: 86 VLRSYTSDIQIGRLAVQGPKRVTAADLELPTEVQVVHPRHYIATLAEDGQLEMEFQIERG 145
Query: 324 RGYRINTLTNFQDGS----YNIDAIFMPVRNANHSIHSYVN-GNEKPEILFLEIWTNGSL 160
+GYR +DG+ +IDAIFMPVR N ++ S + N + + L LEIWT+GSL
Sbjct: 146 KGYRA-IERGSEDGAAIDYLSIDAIFMPVRKVNWTVESERSAANVEQDRLTLEIWTSGSL 204
Query: 159 TPKEALYEASRNLIDLFIP 103
+P+EAL +A++ L+D P
Sbjct: 205 SPQEALSQAAKILVDQLRP 223
[221][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 88.6 bits (218), Expect = 2e-16
Identities = 57/150 (38%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS + + +G VT + LP V I+ TQ++A V E L + +IE+
Sbjct: 86 VLKSYTNEPQIGRLKIQGACKVTTANFELPSEVEIIHGTQYVATVAENAILEMEFKIEKG 145
Query: 324 RGYRI--NTLTNFQDGSYNIDAIFMPVRNANHSIHS-YVNGNEKPEILFLEIWTNGSLTP 154
RGY+I T IDAIFMPVR N+ + ++ +E E L LEIW NGS+TP
Sbjct: 146 RGYKIIDKKQTENSIDFLPIDAIFMPVRKVNYMVEEIFLRNSEIKERLILEIWRNGSVTP 205
Query: 153 KEALYEASRNLIDLFIPFLHAEEEKLNFEN 64
++++ +A+ L++LF PF +K+NFEN
Sbjct: 206 QDSISQAAEVLLNLFNPF-----KKINFEN 230
[222][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 88.2 bits (217), Expect = 3e-16
Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 6/129 (4%)
Frame = -2
Query: 453 GPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN 274
GP VTA LP V IVD +Q++A + E +L + +IE+ +GYR + +D S +
Sbjct: 103 GPATVTAGQFDLPSEVEIVDPSQYVATLAEGSKLEMEFRIEKGKGYR--AIERGKDDSTS 160
Query: 273 -----IDAIFMPVRNANHSIHSY-VNGNEKPEILFLEIWTNGSLTPKEALYEASRNLIDL 112
ID++FMPV N+S+ V+G + L +EIWTNGS+ PKEAL EA+ ++DL
Sbjct: 161 LDFLQIDSVFMPVTKVNYSVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDL 220
Query: 111 FIPFLHAEE 85
F P E
Sbjct: 221 FSPLRDLNE 229
[223][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 87.8 bits (216), Expect = 4e-16
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
+LKS + + GP +TA LP V ++D TQ++A + E +L + +IER
Sbjct: 86 ILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIERG 145
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIHSY-VNGNEKPEILFLEIWTNGSLT 157
+GYR + S + ID+IFMPVR N+S+ +G+ + L LE+WTNGS++
Sbjct: 146 KGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSIS 205
Query: 156 PKEALYEASRNLIDLFIP 103
P+EAL A+ L+DLF P
Sbjct: 206 PQEALSSAAGILVDLFNP 223
[224][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 87.8 bits (216), Expect = 4e-16
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
+LKS + + GP +TA LP V ++D TQ++A + E +L + +IER
Sbjct: 86 ILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIERG 145
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIHSY-VNGNEKPEILFLEIWTNGSLT 157
+GYR + S + ID+IFMPVR N+S+ +G+ + L LE+WTNGS++
Sbjct: 146 KGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSIS 205
Query: 156 PKEALYEASRNLIDLFIP 103
P+EAL A+ L+DLF P
Sbjct: 206 PQEALSSAAGILVDLFNP 223
[225][TOP]
>UniRef100_B4WHD8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7335 RepID=B4WHD8_9SYNE
Length = 315
Score = 87.4 bits (215), Expect = 5e-16
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS + + +GP VTA + LP V ++ ++IA+V +L + +IER
Sbjct: 86 VLKSYSAQPQIGRLVVQGPAKVTAANFDLPSEVELISTDRYIASVAAGHKLEMEFRIERG 145
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVNGNEKP-EILFLEIWTNGSLT 157
+GY+ + + G IDA+FMPVR N+S+ ++++ P + L +EIWTNGSLT
Sbjct: 146 KGYKAIDRSREETGGVEFMQIDAVFMPVRKVNYSVENFIDPEGFPKDRLVMEIWTNGSLT 205
Query: 156 PKEALYEASRNLIDLFIPFLHAE-EEKLNFENHEHKVTLPLP 34
++A+ EA+ L+D+F P E K + + E T +P
Sbjct: 206 AQQAMSEAAALLVDMFNPLKDVTLEPKRDEDTKEEDPTYQIP 247
[226][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 87.0 bits (214), Expect = 6e-16
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Frame = -2
Query: 453 GPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN 274
GP V A LP V IVD Q++A + E +L + ++E+ +GYR + + S +
Sbjct: 103 GPATVVAAQFDLPSEVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLD 162
Query: 273 ---IDAIFMPVRNANHSIHSYVN-GNEKPEILFLEIWTNGSLTPKEALYEASRNLIDLFI 106
ID+IFMPV N+S+ + + + L LEIWTNGS+ PKEAL +A+ L++LF
Sbjct: 163 FLQIDSIFMPVTKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFN 222
Query: 105 PF--LHAEEEKLNFENHE 58
P L+A E NF++ E
Sbjct: 223 PLKDLNALESSGNFDDQE 240
[227][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 87.0 bits (214), Expect = 6e-16
Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V+KS I + KGP VTA + LPP++ I++ +IA ++ L I + ER
Sbjct: 88 VVKSATPDISFGRLKIKGPAVVTADSIQLPPNIEIINPNHYIATISTSNVLEIEFKFERG 147
Query: 324 RGYRI--NTLTNFQDGSYNIDAIFMPVRNANHSIHS-YVNGNEKPEILFLEIWTNGSLTP 154
GY++ T + + IDAIFMP++ + I + Y N N E LFL+IWTNGS++P
Sbjct: 148 TGYKLAGQTFCDKSEDFLQIDAIFMPIQKVDFKIENVYDNSNSITERLFLDIWTNGSISP 207
Query: 153 KEALYEASRNLIDLF 109
+A+ AS+ +I+ F
Sbjct: 208 DDAISYASKFIIEFF 222
[228][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 87.0 bits (214), Expect = 6e-16
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Frame = -2
Query: 453 GPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN 274
GPG VTA +P V ++D Q+IA + E +L + ++ER GYR+ ++ S +
Sbjct: 103 GPGTVTAAQFEVPSEVEVIDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLD 162
Query: 273 ---IDAIFMPVRNANHSIHSY-VNGNEKPEILFLEIWTNGSLTPKEALYEASRNLIDLFI 106
ID++FMPV N+++ +G + L L+IWTNGS+ P+EAL EAS + +LFI
Sbjct: 163 FLQIDSVFMPVTKVNYTVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFI 222
Query: 105 PFLHAEEEKLNFENHEHKV 49
P E + +++ +V
Sbjct: 223 PLKDLNELEAAHSDYQDEV 241
[229][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 86.7 bits (213), Expect = 8e-16
Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ + + +GP VT D LP V IV+ TQ++A ++ L + +IE+
Sbjct: 86 VLRSHTNDPQIGRLFVQGPATVTTDDFELPTEVEIVNPTQYVATLSSDATLEMEFRIEQG 145
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIH-SYVNGNEKPEILFLEIWTNGSLT 157
+GY + + + IDAI+MPVR N+ + + V G + + L L+IWTNG+LT
Sbjct: 146 KGYHAVGKNRDEAAALDFLEIDAIYMPVRRVNYEVEDARVGGALEKDRLILDIWTNGNLT 205
Query: 156 PKEALYEASRNLIDLFIPFLHAE---EEKLNFENHEHKVTLPLPYLS*SI 16
P+E+L +A+ L+DLF P A E + E + +P+ L+ S+
Sbjct: 206 PQESLSQAATILVDLFNPLKDATFNVVEDIELEEEDETNQIPIEGLNLSV 255
[230][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 86.3 bits (212), Expect = 1e-15
Identities = 58/171 (33%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
+LKS + + + GPG VTA LP V +VD TQ+IA + + +L + +IE+
Sbjct: 86 ILKSYTHQPQIGRLTATGPGQVTAAQFDLPSEVEVVDPTQYIATLADGAKLEMEFRIEKG 145
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIHS-YVNGNEKPEILFLEIWTNGSLT 157
+ YR + + + IDA+FMPV N+S+ S + G+ + L LEIWTNGS+
Sbjct: 146 KSYRAVQRNRDEATALDFLQIDAVFMPVTKVNYSVDSIHSEGDAVRDRLTLEIWTNGSIK 205
Query: 156 PKEALYEASRNLIDLFIPF----LHAEEEKLNFENHEHKVTLPLPYLS*SI 16
P+EAL +A+ ++LF P L A +++L E+ + +P+ L S+
Sbjct: 206 PEEALSQAAAIAVELFNPLKDLTLEAIQDELQ-EDEDPTSQIPIEELQLSV 255
[231][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 86.3 bits (212), Expect = 1e-15
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS+ Y + + +GP VT LP V +V+ Q+IA ++ L + QIE+
Sbjct: 86 VLKSHTYQKQIGRLLVQGPATVTVGHFDLPSEVEVVNKNQYIATLSPGATLEMECQIEKG 145
Query: 324 RGYRINTLTNFQDGS-----YNIDAIFMPVRNANHSIHSYVNGNE-KPEILFLEIWTNGS 163
GYR + +D S IDAIFMPVR N+++ +G + + L LEIWT+GS
Sbjct: 146 TGYR--AVDRHRDDSAALDFLQIDAIFMPVRKVNYTVEDARDGGSLEKDRLTLEIWTSGS 203
Query: 162 LTPKEALYEASRNLIDLF 109
LTP+EA+ +A+ L+DLF
Sbjct: 204 LTPQEAISQAAAILVDLF 221
[232][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 85.9 bits (211), Expect = 1e-15
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Frame = -2
Query: 453 GPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN 274
GP VTA +P + +VD +Q++A +++ +L + ++E+ +GYR S +
Sbjct: 103 GPATVTAAQFDVPSEIEVVDPSQYVATLSDGSKLEMEFRVEKGKGYRAIERGKDDTTSLD 162
Query: 273 ---IDAIFMPVRNANHSIHSY-VNGNEKPEILFLEIWTNGSLTPKEALYEASRNLIDLFI 106
ID++FMPV N+S+ V+G + L LEIWTNGS+ PKEAL EA+ ++DLF
Sbjct: 163 FLQIDSVFMPVTKVNYSVEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFS 222
Query: 105 PFLHAEEEKLNFENHEHKV 49
P E + +++ +V
Sbjct: 223 PLKDLNELEATQSDYQDEV 241
[233][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 85.9 bits (211), Expect = 1e-15
Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 4/143 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS G + GP V + LP V VD Q+IA + + +L + +IER
Sbjct: 86 VLKSYTPGPHIGRVMITGPSTVRSAQFDLPSDVEFVDPGQYIATLADGAKLEMEFRIERG 145
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIH-SYVNGNEKPEILFLEIWTNGSLT 157
+GYR + S + +DA+FMPV N+S+ + V+G+ + + L L++WTNGS++
Sbjct: 146 KGYRSVERGRDETSSVDFLQLDAVFMPVTKVNYSVEDTRVDGSLEKDRLILDVWTNGSVS 205
Query: 156 PKEALYEASRNLIDLFIPFLHAE 88
P+EAL +A+ L+DLF P E
Sbjct: 206 PQEALSQAANILVDLFNPLKDIE 228
[234][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 85.1 bits (209), Expect = 2e-15
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Frame = -2
Query: 453 GPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN 274
GP VTA LP V ++D TQ++A + + +L + +IER +GYR + S +
Sbjct: 103 GPVTVTAAHFDLPSEVEVIDPTQYVATIADGGKLEMEFRIERGKGYRTVERGREEATSLD 162
Query: 273 ---IDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 103
ID++FMPVR N+S+ + L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 163 FLQIDSVFMPVRKVNYSVEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 222
[235][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 84.7 bits (208), Expect = 3e-15
Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VL+S+ + + +GPG VTA L LP V +++ HIA + E L + I R
Sbjct: 106 VLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEVINPRHHIATLAEGAILEMEFMIGRG 165
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVNGNE-KPEILFLEIWTNGSLT 157
GYR ++ + + + ID++FMPVR N+++ + G + + L LEIWTNGSLT
Sbjct: 166 HGYRAVDYSDSKAMAIDFLQIDSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLT 225
Query: 156 PKEALYEASRNLIDLFIP 103
P+EAL +A+R L+ LF P
Sbjct: 226 PQEALSQAARILVGLFAP 243
[236][TOP]
>UniRef100_Q6J227 RNA polymerase alpha subunit (Fragment) n=1 Tax=Corethron hystrix
RepID=Q6J227_9STRA
Length = 301
Score = 84.0 bits (206), Expect = 5e-15
Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Frame = -2
Query: 456 KGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGS- 280
+GP +TA + LP + I++ Q+IA ++ + L + + E GYR+ T + S
Sbjct: 105 QGPAVITANAIQLPTELEILNPNQYIATISRSMILEMEFKFESGIGYRLVNQTKMESSSD 164
Query: 279 -YNIDAIFMPVRNANHSIHSYVNGNEK-PEILFLEIWTNGSLTPKEALYEASRNLIDLFI 106
IDA+FMPV+ + + + + N+ E L ++IWTNGS++P+ ALYE+S N+I+LF
Sbjct: 165 FLEIDAVFMPVQKVDFKVENIYDKNKHISENLIIDIWTNGSISPETALYESSNNIIELFN 224
Query: 105 PFLH-----------AEEEKLNFENH 61
+ E ++N ENH
Sbjct: 225 SLIENKFKKEILEPLPENTRINSENH 250
[237][TOP]
>UniRef100_B9IJB3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IJB3_POPTR
Length = 73
Score = 84.0 bits (206), Expect = 5e-15
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = -2
Query: 366 EPIQLCIGLQIERDRGYRINTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEI 193
EPI L IGL+IER+ GY + NFQDGSY+IDAIFM VRNANH++HSY NGNEK ++
Sbjct: 11 EPIDLHIGLEIERNHGYCMKPPKNFQDGSYSIDAIFMHVRNANHNVHSYGNGNEKSQL 68
[238][TOP]
>UniRef100_C5Z5P0 Putative uncharacterized protein Sb10g023655 (Fragment) n=1
Tax=Sorghum bicolor RepID=C5Z5P0_SORBI
Length = 66
Score = 83.6 bits (205), Expect = 7e-15
Identities = 37/50 (74%), Positives = 44/50 (88%)
Frame = -2
Query: 189 FLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHKVTLP 40
FLEIWTNGSLTPKEALYE SRNLIDLF+PF+H EEE NFE +++++T P
Sbjct: 7 FLEIWTNGSLTPKEALYETSRNLIDLFLPFIHTEEEGTNFEENKNRLTPP 56
[239][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 83.2 bits (204), Expect = 9e-15
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Frame = -2
Query: 453 GPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN 274
GP +TA LP V ++D TQ++A + E +L + +IE+ +GYR + S +
Sbjct: 103 GPTTITAAHFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIEKGKGYRTVERGREEATSLD 162
Query: 273 ---IDAIFMPVRNANHSIH-SYVNGNEKPEILFLEIWTNGSLTPKEALYEASRNLIDLFI 106
ID+IFMPVR N+S+ S G + L LE+WTNGS++P+EAL A+ L+DLF
Sbjct: 163 FLQIDSIFMPVRKVNYSVEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFN 222
Query: 105 P 103
P
Sbjct: 223 P 223
[240][TOP]
>UniRef100_Q6J225 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassiosira sp.
Cleve BA153110 RepID=Q6J225_9STRA
Length = 300
Score = 82.8 bits (203), Expect = 1e-14
Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS + A + GP +TA + LPP V I++ +IA ++ L I +IE
Sbjct: 88 VLKSKNSTRQFARLRLHGPAVITASSIQLPPDVEIINPNHYIATLSSSHILEIEFKIESG 147
Query: 324 RGYRINTLTNFQDGSYNI---DAIFMPVRNANHSIHS-YVNGNEKPEILFLEIWTNGSLT 157
YR+ T F D N DAIFMP + + + + Y N N E +FL++WTNGS++
Sbjct: 148 HDYRLANET-FSDKLSNFIETDAIFMPDQKDDFKVENVYDNSNNVKERVFLDVWTNGSIS 206
Query: 156 PKEALYEASRNLIDLFIPFLHAEEEKLNFENHEHK 52
P++A++ AS +IDL F E K+N E K
Sbjct: 207 PEQAIFSASNLIIDL---FKSITEHKINQEKESIK 238
[241][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 82.0 bits (201), Expect = 2e-14
Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS + + G VTA + LP V +VD TQ++A +TE +L + +IE
Sbjct: 88 VLKSYSDQAQIGRLVATSAGTVTAANFELPSEVEVVDPTQYVATLTEGSKLEMEFRIETG 147
Query: 324 RGYRINTLTNFQDGS----YNIDAIFMPVRNANHSIHSYVNGN--EKPEILFLEIWTNGS 163
GY+ DG+ IDA+FMPV N+ + + G E + L LEIWTNGS
Sbjct: 148 TGYK-GVERGKDDGTSLDFLEIDAVFMPVTKVNYIVED-IRGEHGEAQDRLILEIWTNGS 205
Query: 162 LTPKEALYEASRNLIDLFIP 103
PKEAL EA+ ++DLF P
Sbjct: 206 FNPKEALSEAAEIVVDLFSP 225
[242][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 82.0 bits (201), Expect = 2e-14
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLK N+ + + +GP VT+ + P + +VD Q+IA ++ L + L++E+
Sbjct: 90 VLKGNVLKNQIGRLKVQGPAIVTSGQIEFPLDITVVDPCQYIATISGNDYLEMELKVEKS 149
Query: 324 RGYRINTLTNFQDGS----YNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLT 157
GY++ + F S ID+IFMPV+ N+ + ++ E L LE+WTNGSL+
Sbjct: 150 SGYKL--VETFSKKSPLDFLPIDSIFMPVKKVNYYVEEILDSKVAYEKLILELWTNGSLS 207
Query: 156 PKEALYEASRNLIDLFIP 103
P++++ AS NL+ LF P
Sbjct: 208 PQQSINYASDNLVKLFNP 225
[243][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 82.0 bits (201), Expect = 2e-14
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLK+ + + +GP V A DL LP S+ +VD Q+IA ++ + L + +E
Sbjct: 91 VLKTQSQETQRGHLSVQGPSTVLARDLQLPSSIELVDPDQYIATISGRVSLNMEFTVEVG 150
Query: 324 RGYRI---NTLTNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTP 154
+GY++ FQ IDA+FMPV N+++ G+ E + +E+WTNGS+
Sbjct: 151 KGYQLPDYEKKKTFQVDVLPIDAVFMPVTKVNYTVEENYGGDRSQERVIIEVWTNGSINS 210
Query: 153 KEALYEASRNLIDLFIP 103
++A+ + +I+LF P
Sbjct: 211 RQAIDLSVNKIINLFSP 227
[244][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 81.3 bits (199), Expect = 3e-14
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Frame = -2
Query: 453 GPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSYN 274
GP VT LP V ++D TQ++A + E +L + +IE+ +GYR + S +
Sbjct: 103 GPATVTVAHFDLPSEVEVIDQTQYVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLD 162
Query: 273 ---IDAIFMPVRNANHSIHSYVNGNEKP-EILFLEIWTNGSLTPKEALYEASRNLIDLFI 106
ID++FMPVR N+S+ + P + L LE+WTNGS++P+EAL A+ L++LF
Sbjct: 163 FLQIDSVFMPVRKVNYSVEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFN 222
Query: 105 P 103
P
Sbjct: 223 P 223
[245][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 80.9 bits (198), Expect = 4e-14
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 9/147 (6%)
Frame = -2
Query: 456 KGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLTNFQDGSY 277
+GP VTA + + P V +++ +IA ++ L + +IE+ +GYR + S
Sbjct: 101 QGPATVTAINFEVSPDVEVINLDHYIATLSADATLEMEFKIEQGKGYRAIERGKDESASL 160
Query: 276 N---IDAIFMPVRNANHSIHSYVNGN-EKPEILFLEIWTNGSLTPKEALYEASRNLIDLF 109
+ IDAIFMPVR N+++ +G + + L LEIWTNGSLTP+EAL + + L+DLF
Sbjct: 161 DFLQIDAIFMPVRKVNYTVEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLF 220
Query: 108 -----IPFLHAEEEKLNFENHEHKVTL 43
+PF +E E+ +++ +
Sbjct: 221 NPLKDVPFRSSEPSHSTEEDETNQIPI 247
[246][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 80.9 bits (198), Expect = 4e-14
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS + + G +VTA LP V +V+ TQ IA +TE +L + +IE+
Sbjct: 86 VLKSYTEQPQIGRLVATGAAHVTAGQFELPSEVEVVNPTQPIATLTEGAKLEMEFRIEKG 145
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIHSYVNGNE--KPEILFLEIWTNGSL 160
GY ++ + + + IDA+FMPV N+S+ S + G E + L LEIWTNGS
Sbjct: 146 VGYVPVERSSEEPAALDFLQIDAVFMPVTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSF 204
Query: 159 TPKEALYEASRNLIDLFIP 103
PKEAL +A+ L+DLF P
Sbjct: 205 NPKEALSKAADILVDLFNP 223
[247][TOP]
>UniRef100_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Thalassiosira
pseudonana RepID=RPOA_THAPS
Length = 313
Score = 80.9 bits (198), Expect = 4e-14
Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 8/156 (5%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS + + +GP +TA + LPP + I++ +IA ++ L I +IE
Sbjct: 88 VLKSKTPNRQFGRLRLQGPAVITASSIQLPPEIEIINPNHYIATISSSHILEIEFKIESG 147
Query: 324 RGYRI-NTLTN--FQDGSYNIDAIFMPVRNANHSIHS-YVNGNEKPEILFLEIWTNGSLT 157
YR+ N L + F+D DAIFMPV+ + + + Y N N E L ++IWTNGS++
Sbjct: 148 SKYRLANELFSDKFED-FIETDAIFMPVQKVDFKVENVYDNSNNIKERLLIDIWTNGSIS 206
Query: 156 PKEALYEASRNLIDLFIPF----LHAEEEKLNFENH 61
P++A++ S +I+LF ++ E+E + +NH
Sbjct: 207 PEQAIFSGSNLIINLFKSIGEQKINKEKENIKEKNH 242
[248][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 80.5 bits (197), Expect = 6e-14
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 3/145 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V+KS+ I+ + +GP +TA + LP + IV+ +IA ++ I L + +IE
Sbjct: 86 VIKSDTTEIKFGRLKVQGPLVLTADSIDLPSGIKIVNPNHYIATISTSINLELEFKIEHG 145
Query: 324 RGYRI-NTLTNFQDGSY-NIDAIFMPVRNANHSIHS-YVNGNEKPEILFLEIWTNGSLTP 154
GY++ + L N ++ ++ ID+IFMPV+ N I + Y N E L LEIWTNGS+ P
Sbjct: 146 IGYKLASQLFNDENKNFLQIDSIFMPVQKVNFKIENLYDADNSISERLILEIWTNGSIEP 205
Query: 153 KEALYEASRNLIDLFIPFLHAEEEK 79
EAL +A + +I+ F L + K
Sbjct: 206 IEALKKACKIIINCFNSLLKTQNTK 230
[249][TOP]
>UniRef100_Q6J223 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cylindrotheca
fusiformis RepID=Q6J223_CYLFU
Length = 291
Score = 80.1 bits (196), Expect = 8e-14
Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
VLKS + + +GP VTA + LP + IV+ ++ ++ L I + E
Sbjct: 78 VLKSKTQTAQFGRLKIQGPTVVTADLIQLPSDLEIVNPNHYLMTISTSNVLEIEFKFEYG 137
Query: 324 RGYRINTLTNFQDGSYN---IDAIFMPVRNANHSIHS-YVNGNEKPEILFLEIWTNGSLT 157
GY++ T F D S N +D IFMPV+ N I + Y N N E +FL+IWTNGS++
Sbjct: 138 TGYKL-TSQAFLDESDNYLQLDTIFMPVQKVNFKIENVYDNNNNITEQVFLDIWTNGSIS 196
Query: 156 PKEALYEASRNLIDLFIPFLHAEEEK 79
P EAL A++ IDLF L +E K
Sbjct: 197 PNEALKSAAQITIDLFELLLKNKETK 222
[250][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 80.1 bits (196), Expect = 8e-14
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Frame = -2
Query: 504 VLKSNLYGIRDASICFKGPGYVTAPDLILPPSVVIVDNTQHIANVTEPIQLCIGLQIERD 325
V ++ ++ + +GP V A +L LP S+ +VD Q+IA ++ L + I
Sbjct: 91 VFRTKSLDVQKGYLSIQGPCVVKAANLQLPTSIEVVDGGQYIATLSGNANLDMEFVINTG 150
Query: 324 RGYRINTLT---NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKPEILFLEIWTNGSLTP 154
+GY++ N S +DAIFMP+ N+ + E + LEIWTNGS++P
Sbjct: 151 KGYQMADYAIKKNSYISSLPVDAIFMPIHKVNYMVEQDHTSKFLTERVILEIWTNGSISP 210
Query: 153 KEALYEASRNLIDLFIPFLHAEEE 82
++AL + +IDLF P H E
Sbjct: 211 RDALDIGIKKVIDLFNPLHHCSSE 234