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[1][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 107 bits (266), Expect(2) = 2e-32
Identities = 56/93 (60%), Positives = 72/93 (77%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEVAEA GLS + L LL PK + S + +G + L PSEVIADP+A+ EE LIKQF
Sbjct: 446 EEVAEATGLSMKRLNAVLLTPKAPR-SLDQKIGINQNLKPSEVIADPDAETAEELLIKQF 504
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
M++DLEKV++SLNPREKQV+RWR+G++DGR K+
Sbjct: 505 MREDLEKVLNSLNPREKQVIRWRYGLEDGRTKT 537
Score = 56.2 bits (134), Expect(2) = 2e-32
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
+ L EIGE++GVSRERIRQ ESCAFRKLK K+R + Q
Sbjct: 536 KTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQ 573
[2][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 107 bits (266), Expect(2) = 2e-32
Identities = 56/93 (60%), Positives = 72/93 (77%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEVAEA GLS + L LL PK + S + +G + L PSEVIADP+A+ EE LIKQF
Sbjct: 103 EEVAEATGLSMKRLNAVLLTPKAPR-SLDQKIGINQNLKPSEVIADPDAETAEELLIKQF 161
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
M++DLEKV++SLNPREKQV+RWR+G++DGR K+
Sbjct: 162 MREDLEKVLNSLNPREKQVIRWRYGLEDGRTKT 194
Score = 56.2 bits (134), Expect(2) = 2e-32
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
+ L EIGE++GVSRERIRQ ESCAFRKLK K+R + Q
Sbjct: 193 KTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQ 230
[3][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 105 bits (262), Expect(2) = 3e-32
Identities = 55/93 (59%), Positives = 72/93 (77%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AEA GLS + L+ LL PK + S + +G + L PSEVIADPEA +E+ LIK+F
Sbjct: 438 EEIAEATGLSMKRLMAVLLSPKPPR-SLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 496
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
M++DL+KV+DSL REKQV+RWRFGM+DGRMK+
Sbjct: 497 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKT 529
Score = 57.0 bits (136), Expect(2) = 3e-32
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
+ L EIGEM+GVSRER+RQ ES AFRKLK KKRN++ Q
Sbjct: 528 KTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQ 565
[4][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 104 bits (260), Expect(2) = 4e-32
Identities = 55/93 (59%), Positives = 71/93 (76%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AEA GLS + L+ LL PK + S +G + L PSEVIADPEA +E+ LIK+F
Sbjct: 440 EEIAEATGLSMKRLMAVLLSPKPPR-SLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEF 498
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
M++DL+KV+DSL REKQV+RWRFGM+DGRMK+
Sbjct: 499 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKT 531
Score = 57.0 bits (136), Expect(2) = 4e-32
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
+ L EIGEM+GVSRER+RQ ES AFRKLK KKRN++ Q
Sbjct: 530 KTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQ 567
[5][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 104 bits (260), Expect(2) = 4e-32
Identities = 55/93 (59%), Positives = 71/93 (76%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AEA GLS + L+ LL PK + S + +G + L PSEVIADPEA E+ LIK+F
Sbjct: 438 EEIAEATGLSMKRLMAVLLSPKPPR-SLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEF 496
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
M++DL+KV+DSL REKQV+RWRFGM+DGRMK+
Sbjct: 497 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKT 529
Score = 57.0 bits (136), Expect(2) = 4e-32
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
+ L EIGEM+GVSRER+RQ ES AFRKLK KKRN++ Q
Sbjct: 528 KTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQ 565
[6][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 105 bits (261), Expect(2) = 4e-31
Identities = 56/93 (60%), Positives = 73/93 (78%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEVAEA GLS + L+ LL PK + S + +G L PSEVIADPEA+ +E+ L+KQF
Sbjct: 438 EEVAEATGLSMKRLMAVLLSPKPPR-SLDQKIGINLNLKPSEVIADPEAETSEDILMKQF 496
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
M++DL+KV+DSL+ REKQV+RWRFGM+DGRMK+
Sbjct: 497 MRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKT 529
Score = 53.5 bits (127), Expect(2) = 4e-31
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
+ L EIGE +GVSRER+RQ ++ AFRKLK KKRNS+ Q
Sbjct: 528 KTLQEIGETMGVSRERVRQIDTSAFRKLKNKKRNSHLQ 565
[7][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 105 bits (263), Expect(2) = 8e-31
Identities = 57/93 (61%), Positives = 71/93 (76%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEVAEA GLS + L LL PK + S + +G L PSEVIADPEA+ EE L+KQF
Sbjct: 437 EEVAEAAGLSMKRLSAVLLTPKAPR-SLDQKIGMNMDLKPSEVIADPEAETAEELLMKQF 495
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MK+DLEKV+++LNPRE QV+RWRFG++DGRMK+
Sbjct: 496 MKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKT 528
Score = 51.6 bits (122), Expect(2) = 8e-31
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
+ L EIGE++GVSRERIRQ ES AFRKLK KKR
Sbjct: 527 KTLQEIGEIMGVSRERIRQIESSAFRKLKNKKR 559
[8][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 103 bits (256), Expect(2) = 4e-30
Identities = 54/93 (58%), Positives = 70/93 (75%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEVAEA GLS + L L+ PK + S + +G L PSEVIADPEA+ E+ L KQF
Sbjct: 443 EEVAEATGLSMKRLTAVLMTPKAPR-SLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQF 501
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
M++DLEKV+D+L+ REKQV+RWRFG++DGRMK+
Sbjct: 502 MRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKT 534
Score = 52.0 bits (123), Expect(2) = 4e-30
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
+ L EIGE++GVSRERIRQ ES AFRKL+ KK+ N Q
Sbjct: 533 KTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQ 570
[9][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 98.6 bits (244), Expect(2) = 2e-27
Identities = 53/93 (56%), Positives = 69/93 (74%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
+EVAEA GLS + L LL PK + S + +G L SEV ADPEA+ E+ L+K+F
Sbjct: 432 KEVAEATGLSMKRLSAVLLTPKAPR-SLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEF 490
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MKKDLE+V++SL+PRE QV+RWRFGM+DGRMK+
Sbjct: 491 MKKDLERVLESLSPRENQVIRWRFGMEDGRMKT 523
Score = 47.8 bits (112), Expect(2) = 2e-27
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
+ L EIGE++GVSRERIRQ E AFRKLK K R
Sbjct: 522 KTLQEIGELMGVSRERIRQIELSAFRKLKNKNR 554
[10][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 95.1 bits (235), Expect(2) = 2e-26
Identities = 53/93 (56%), Positives = 67/93 (72%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
+EVAEA GLS + L LL PK + S + +G L SEV ADPEA+ E+ L+K+F
Sbjct: 435 KEVAEAAGLSMKRLSAVLLTPKAPR-SLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEF 493
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MKKDL KV+ SL+PRE QV+RWRFGM+DGRMK+
Sbjct: 494 MKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKT 526
Score = 47.4 bits (111), Expect(2) = 2e-26
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
+ L EIGE++GVSRER+RQ E AFRKLK K R
Sbjct: 525 KTLQEIGELMGVSRERVRQIELSAFRKLKNKNR 557
[11][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 63.2 bits (152), Expect(2) = 2e-17
Identities = 36/93 (38%), Positives = 58/93 (62%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G+ + + + LPK S +S +GS ++ EV ADP A+ EE L +
Sbjct: 429 EEIAADTGMPIKRVEAAVNLPKYS-VSLDSKIGSTDMTY-QEVTADPTAETAEEMLNRLS 486
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MK+D+ K +D+L RE+QV+ RFG++DGR+++
Sbjct: 487 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRT 519
Score = 49.3 bits (116), Expect(2) = 2e-17
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L EIG +GVSRERIRQ ES AFRKL+ KKR
Sbjct: 518 RTLQEIGNTMGVSRERIRQIESAAFRKLRSKKR 550
[12][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 63.2 bits (152), Expect(2) = 2e-17
Identities = 36/93 (38%), Positives = 58/93 (62%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G+ + + + LPK S +S +GS ++ EV ADP A+ EE L +
Sbjct: 429 EEIAADTGMPIKRVEAAVNLPKYS-VSLDSKIGSTDMTY-QEVTADPTAETAEEMLNRLS 486
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MK+D+ K +D+L RE+QV+ RFG++DGR+++
Sbjct: 487 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRT 519
Score = 49.3 bits (116), Expect(2) = 2e-17
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L EIG +GVSRERIRQ ES AFRKL+ KKR
Sbjct: 518 RTLQEIGNTMGVSRERIRQIESAAFRKLRSKKR 550
[13][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 63.2 bits (152), Expect(2) = 2e-17
Identities = 36/93 (38%), Positives = 58/93 (62%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G+ + + + LPK S +S +GS ++ EV ADP A+ EE L +
Sbjct: 429 EEIAADTGMPIKRVEAAVNLPKYS-VSLDSKIGSTDMTY-QEVTADPTAETAEEMLNRLS 486
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MK+D+ K +D+L RE+QV+ RFG++DGR+++
Sbjct: 487 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRT 519
Score = 49.3 bits (116), Expect(2) = 2e-17
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L EIG +GVSRERIRQ ES AFRKL+ KKR
Sbjct: 518 RTLQEIGNTMGVSRERIRQIESAAFRKLRSKKR 550
[14][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 63.2 bits (152), Expect(2) = 2e-17
Identities = 36/93 (38%), Positives = 58/93 (62%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G+ + + + LPK S +S +GS ++ EV ADP A+ EE L +
Sbjct: 428 EEIAADTGMPIKRVEAAVNLPKYS-VSLDSKIGSTDMTY-QEVTADPTAETAEEMLNRLS 485
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MK+D+ K +D+L RE+QV+ RFG++DGR+++
Sbjct: 486 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRT 518
Score = 49.3 bits (116), Expect(2) = 2e-17
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L EIG +GVSRERIRQ ES AFRKL+ KKR
Sbjct: 517 RTLQEIGNTMGVSRERIRQIESAAFRKLRSKKR 549
[15][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 68.2 bits (165), Expect(2) = 3e-17
Identities = 35/93 (37%), Positives = 59/93 (63%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G+ R + + LPK + +S T +G ++ E+ D + EE L +
Sbjct: 405 EEIASDTGMPLRRVEAAMSLPKYT-VSLTSKVGCTDMTY-QEITPDTSTETAEEMLHRWL 462
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MK+D+++ +D L+PRE+QV+R+RFGMDDGR+++
Sbjct: 463 MKEDVDRALDGLSPRERQVIRYRFGMDDGRLRT 495
Score = 43.5 bits (101), Expect(2) = 3e-17
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
R L +IG ++GVSRERIRQ E AFRKL+ +K+ + Q
Sbjct: 494 RTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQ 531
[16][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 68.2 bits (165), Expect(2) = 3e-17
Identities = 35/93 (37%), Positives = 59/93 (63%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G+ R + + LPK + +S T +G ++ E+ D + EE L +
Sbjct: 405 EEIASDTGMPLRRVEAAMSLPKYT-VSLTSKVGCTDMTY-QEITPDTSTETAEEMLHRWL 462
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MK+D+++ +D L+PRE+QV+R+RFGMDDGR+++
Sbjct: 463 MKEDVDRALDGLSPRERQVIRYRFGMDDGRLRT 495
Score = 43.5 bits (101), Expect(2) = 3e-17
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
R L +IG ++GVSRERIRQ E AFRKL+ +K+ + Q
Sbjct: 494 RTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQ 531
[17][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 68.2 bits (165), Expect(2) = 3e-17
Identities = 35/93 (37%), Positives = 59/93 (63%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G+ R + + LPK + +S T +G ++ E+ D + EE L +
Sbjct: 362 EEIASDTGMPLRRVEAAMSLPKYT-VSLTSKVGCTDMTY-QEITPDTSTETAEEMLHRWL 419
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MK+D+++ +D L+PRE+QV+R+RFGMDDGR+++
Sbjct: 420 MKEDVDRALDGLSPRERQVIRYRFGMDDGRLRT 452
Score = 43.5 bits (101), Expect(2) = 3e-17
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
R L +IG ++GVSRERIRQ E AFRKL+ +K+ + Q
Sbjct: 451 RTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQ 488
[18][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 68.2 bits (165), Expect(2) = 3e-17
Identities = 35/93 (37%), Positives = 59/93 (63%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G+ R + + LPK + +S T +G ++ E+ D + EE L +
Sbjct: 208 EEIASDTGMPLRRVEAAMSLPKYT-VSLTSKVGCTDMTY-QEITPDTSTETAEEMLHRWL 265
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MK+D+++ +D L+PRE+QV+R+RFGMDDGR+++
Sbjct: 266 MKEDVDRALDGLSPRERQVIRYRFGMDDGRLRT 298
Score = 43.5 bits (101), Expect(2) = 3e-17
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
R L +IG ++GVSRERIRQ E AFRKL+ +K+ + Q
Sbjct: 297 RTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQ 334
[19][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
bicolor RepID=C6JRK5_SORBI
Length = 238
Score = 62.4 bits (150), Expect(2) = 4e-17
Identities = 37/93 (39%), Positives = 57/93 (61%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G+ + + + LPK S +S +GS ++ EV ADP A+ EE L +
Sbjct: 103 EEIALDTGMPIKRVEAAVNLPKYS-VSLDSKIGSTDMTY-QEVTADPSAETAEEMLNRMS 160
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MKKD+ K +D+L REKQV+ RFG++D R+++
Sbjct: 161 MKKDVHKALDTLTTREKQVVVLRFGLEDDRIRT 193
Score = 48.9 bits (115), Expect(2) = 4e-17
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L EIG ++GVSRERIRQ ES AFRKL+ KKR
Sbjct: 192 RTLQEIGNIMGVSRERIRQIESGAFRKLRSKKR 224
[20][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 63.2 bits (152), Expect(2) = 6e-17
Identities = 37/93 (39%), Positives = 57/93 (61%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G+ + + + LPK S +S +GS ++ EV ADP A+ EE L +
Sbjct: 404 EEIAVDTGIPIKRVEAAVNLPKYS-VSLDSKIGSTDMTY-QEVTADPSAETAEEMLNRMS 461
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MKKD+ +D+L REKQV+ RFG++DGR+++
Sbjct: 462 MKKDVHMALDTLTTREKQVVVLRFGLEDGRIRT 494
Score = 47.8 bits (112), Expect(2) = 6e-17
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L EIG ++GVSRERIRQ ES AFRKL+ KK+
Sbjct: 493 RTLQEIGNIMGVSRERIRQIESGAFRKLRSKKK 525
[21][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 65.1 bits (157), Expect(2) = 1e-16
Identities = 36/93 (38%), Positives = 59/93 (63%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G++ R + + LPK S +S T +G ++ E++ D A+ EE L +
Sbjct: 392 EEIAVDTGMTIRRVEAAMSLPKYS-VSFTSKVGCTDVTY-QEIMPDTSAETAEETLHRWL 449
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MKKD+ +DSL+PR+KQV+R+RFG++ GR ++
Sbjct: 450 MKKDVNTALDSLSPRKKQVMRYRFGIEGGRART 482
Score = 44.7 bits (104), Expect(2) = 1e-16
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
R L +IG+++GVSRERIRQ E AFRKL+ K R + Q
Sbjct: 481 RTLHDIGQLMGVSRERIRQIELGAFRKLRSKNRLQSLQ 518
[22][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 61.6 bits (148), Expect(2) = 5e-16
Identities = 35/93 (37%), Positives = 58/93 (62%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A G++ R + + LPK S +S T +G ++ E++ D A+ EE L +
Sbjct: 393 EEIAVDTGMTIRRVEAAMSLPKYS-VSFTSKVGCTDVTY-QEIMPDTSAETAEEVLHRWL 450
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
MKKD+ ++SL+PREK V+R+RFG++ GR ++
Sbjct: 451 MKKDVNTALESLSPREKLVMRYRFGIEGGRPRT 483
Score = 46.2 bits (108), Expect(2) = 5e-16
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQ 63
R L +IG+++GVSRERIRQ E AFRKL+ KKR + Q
Sbjct: 482 RTLHDIGQIMGVSRERIRQIELGAFRKLRSKKRVQSLQ 519
[23][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 65.1 bits (157), Expect(2) = 3e-15
Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTED--LGSPELLNPSEVIADPEAKQTEEQLIK 277
EEVAE GL+ L + K ++ G+ + +G E++AD + E+ ++K
Sbjct: 442 EEVAELVGLTVEKLKSVV---KSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVK 498
Query: 276 QFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
Q M++D+E V+ +LNPRE++VLR RFG+DDGR K+
Sbjct: 499 QLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKT 533
Score = 40.0 bits (92), Expect(2) = 3e-15
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL++ RNS
Sbjct: 532 KTLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNS 566
[24][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 64.7 bits (156), Expect(2) = 8e-15
Identities = 35/93 (37%), Positives = 61/93 (65%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEVAE G+S L +++ ++ S +G + + E+IAD + + E+ LI+Q
Sbjct: 456 EEVAELVGMSVEKLK-FIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQV 514
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+D++ V+ +LNPRE++VLR RFG+DDG+ ++
Sbjct: 515 LKQDVDGVLCTLNPREREVLRLRFGLDDGQSRT 547
Score = 38.9 bits (89), Expect(2) = 8e-15
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L EIG + V+RERIRQ E+ A RKL++ RN
Sbjct: 546 RTLEEIGTLFKVTRERIRQIEAKAMRKLRQPSRN 579
[25][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 67.0 bits (162), Expect(2) = 1e-14
Identities = 40/93 (43%), Positives = 57/93 (61%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEVAE G+S L ++ R S +G SE++AD ++ TE + K+
Sbjct: 460 EEVAEVAGISMTRL-RHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKEL 518
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
KKDL++V+D+L REKQV+R R+G+DDGRMKS
Sbjct: 519 FKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKS 551
Score = 35.8 bits (81), Expect(2) = 1e-14
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSN 69
++L E+GE +SRER+RQ E A RKL++ R +
Sbjct: 550 KSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 585
[26][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 67.0 bits (162), Expect(2) = 1e-14
Identities = 40/93 (43%), Positives = 57/93 (61%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEVAE G+S L ++ R S +G SE++AD ++ TE + K+
Sbjct: 363 EEVAEVAGISMTRL-RHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKEL 421
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
KKDL++V+D+L REKQV+R R+G+DDGRMKS
Sbjct: 422 FKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKS 454
Score = 35.8 bits (81), Expect(2) = 1e-14
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSN 69
++L E+GE +SRER+RQ E A RKL++ R +
Sbjct: 453 KSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 488
[27][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 60.1 bits (144), Expect(2) = 9e-14
Identities = 25/48 (52%), Positives = 39/48 (81%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+Q+ K +++DLEKV+DSL+PRE+ VLR R+G+DDGRMK+
Sbjct: 304 ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKT 351
Score = 40.0 bits (92), Expect(2) = 9e-14
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 350 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 384
[28][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 60.1 bits (144), Expect(2) = 9e-14
Identities = 25/48 (52%), Positives = 39/48 (81%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+Q+ K +++DLEKV+DSL+PRE+ VLR R+G+DDGRMK+
Sbjct: 303 ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKT 350
Score = 40.0 bits (92), Expect(2) = 9e-14
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 349 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 383
[29][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 60.1 bits (144), Expect(2) = 9e-14
Identities = 25/48 (52%), Positives = 39/48 (81%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+Q+ K +++DLEKV+DSL+PRE+ VLR R+G+DDGRMK+
Sbjct: 302 ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKT 349
Score = 40.0 bits (92), Expect(2) = 9e-14
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 348 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 382
[30][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 57.0 bits (136), Expect(2) = 7e-13
Identities = 23/48 (47%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+Q+ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 304 ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKT 351
Score = 40.0 bits (92), Expect(2) = 7e-13
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 350 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 384
[31][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 57.0 bits (136), Expect(2) = 7e-13
Identities = 23/48 (47%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+Q+ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 300 ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKT 347
Score = 40.0 bits (92), Expect(2) = 7e-13
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 346 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 380
[32][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 57.0 bits (136), Expect(2) = 7e-13
Identities = 23/48 (47%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+Q+ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 293 EADGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKT 340
Score = 40.0 bits (92), Expect(2) = 7e-13
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 339 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 373
[33][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 56.2 bits (134), Expect(2) = 1e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 292 EADGENPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 339
Score = 40.0 bits (92), Expect(2) = 1e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 338 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 372
[34][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 338 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 385
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 384 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 418
[35][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 376
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 375 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
[36][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 376
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 375 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
[37][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 376
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 375 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
[38][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 376
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 375 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
[39][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 376
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 375 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
[40][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 329 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 376
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 375 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
[41][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 327 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 374
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 373 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 407
[42][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 290 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 337
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 336 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 370
[43][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+D+L+PRE+ VLR R+G+DDGRMK+
Sbjct: 289 EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKT 336
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 335 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 369
[44][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 55.5 bits (132), Expect(2) = 2e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+Q+ K +++DLE V+D+L+PRE+ VL+ R+G+DDGRMK+
Sbjct: 284 ESDGETPEDQVSKSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKT 331
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 330 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 364
[45][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 56.6 bits (135), Expect(2) = 3e-12
Identities = 26/68 (38%), Positives = 44/68 (64%)
Frame = -2
Query: 375 ISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFG 196
IS ++ + + E + D A+ ++ K +K+DLE V+++L+PRE+ VLR R+G
Sbjct: 463 ISLSQSVNDDDSRTVEETLVDDHAEHPDDATGKVLLKEDLENVLNTLSPRERDVLRLRYG 522
Query: 195 MDDGRMKS 172
MDDGR+K+
Sbjct: 523 MDDGRVKT 530
Score = 38.5 bits (88), Expect(2) = 3e-12
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG + V+RERIRQ E+ A RKL++ RN
Sbjct: 529 KTLEEIGNVFSVTRERIRQIEAKALRKLRQPSRN 562
[46][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 55.1 bits (131), Expect(2) = 3e-12
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V++SL+PRE+ VLR R+G+DDGRMK+
Sbjct: 299 ESDGETPEDEVSKNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKT 346
Score = 40.0 bits (92), Expect(2) = 3e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 345 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 379
[47][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 54.3 bits (129), Expect(2) = 3e-12
Identities = 24/52 (46%), Positives = 38/52 (73%)
Frame = -2
Query: 327 EVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + D A+ E+ K +K+DLE V+++LNPRE+ VLR R+G+DDGR+K+
Sbjct: 238 DTLVDVTAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKT 289
Score = 40.8 bits (94), Expect(2) = 3e-12
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG + V+RERIRQ E+ A RKLK+ RNS
Sbjct: 288 KTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNS 322
[48][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 54.3 bits (129), Expect(2) = 4e-12
Identities = 22/48 (45%), Positives = 37/48 (77%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ E + EE++ K +++DLE V+++L PRE+ VL+ R+G+DDGRMK+
Sbjct: 317 ESEGETPEERVAKVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKT 364
Score = 40.0 bits (92), Expect(2) = 4e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 363 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 397
[49][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 54.7 bits (130), Expect(2) = 6e-12
Identities = 24/52 (46%), Positives = 38/52 (73%)
Frame = -2
Query: 327 EVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + D A+ E+ K +K+DLE V+++LNPRE+ VLR R+G+DDGR+K+
Sbjct: 424 DTLIDANAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKT 475
Score = 39.3 bits (90), Expect(2) = 6e-12
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG + V+RERIRQ E+ A RKLK+ RN
Sbjct: 474 KTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRN 507
[50][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 53.5 bits (127), Expect(2) = 6e-12
Identities = 21/48 (43%), Positives = 38/48 (79%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+++L+PRE+ VLR R+G+DDGRMK+
Sbjct: 313 EADGETPEDKVAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKT 360
Score = 40.4 bits (93), Expect(2) = 6e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 359 KTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNS 393
[51][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 53.9 bits (128), Expect(2) = 6e-12
Identities = 22/48 (45%), Positives = 37/48 (77%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+Q+ K +++DLE V+D+L+ RE+ VLR R+G+DDGRMK+
Sbjct: 288 EADGETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKT 335
Score = 40.0 bits (92), Expect(2) = 6e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 334 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 368
[52][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 53.5 bits (127), Expect(2) = 7e-12
Identities = 21/48 (43%), Positives = 37/48 (77%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 317 ESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKT 364
Score = 40.0 bits (92), Expect(2) = 7e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 363 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 397
[53][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 53.1 bits (126), Expect(2) = 7e-12
Identities = 21/48 (43%), Positives = 37/48 (77%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 312 EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKT 359
Score = 40.4 bits (93), Expect(2) = 7e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 358 KTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNS 392
[54][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 53.1 bits (126), Expect(2) = 7e-12
Identities = 21/48 (43%), Positives = 37/48 (77%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 312 EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKT 359
Score = 40.4 bits (93), Expect(2) = 7e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 358 KTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNS 392
[55][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 53.1 bits (126), Expect(2) = 1e-11
Identities = 29/93 (31%), Positives = 54/93 (58%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ G+S V ++ + +S +G E + + + DP+AK E+
Sbjct: 239 EEIAKEMGIS-EDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTL 297
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++ L++V+ +L RE++VLR RFG+DDGR ++
Sbjct: 298 LREQLDEVLKTLTEREQKVLRLRFGLDDGRART 330
Score = 39.7 bits (91), Expect(2) = 1e-11
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 329 RTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRS 362
[56][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 55.1 bits (131), Expect(2) = 1e-11
Identities = 32/93 (34%), Positives = 53/93 (56%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +S V +L + +S +G + + + I D +AK + +
Sbjct: 229 EEIAEQMDMS-EDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAKPPADAAAFEL 287
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K LE+V+DSL PRE++VLR RFG+DDG+ ++
Sbjct: 288 LKGQLEEVLDSLTPREQKVLRLRFGLDDGKTRT 320
Score = 37.7 bits (86), Expect(2) = 1e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ A RKL+ R+
Sbjct: 319 RTLEEVGKHFGVTRERIRQIEAKALRKLRHPMRS 352
[57][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 52.0 bits (123), Expect(2) = 2e-11
Identities = 21/48 (43%), Positives = 37/48 (77%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+Q+ K +++DLE V+ +L+PRE+ VL+ R+G+DDGRMK+
Sbjct: 331 ESDGETPEDQVSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKT 378
Score = 40.4 bits (93), Expect(2) = 2e-11
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 377 KTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNS 411
[58][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 52.0 bits (123), Expect(2) = 2e-11
Identities = 21/48 (43%), Positives = 37/48 (77%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+Q+ K +++DLE V+ +L+PRE+ VL+ R+G+DDGRMK+
Sbjct: 291 ESDGETPEDQVSKNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKT 338
Score = 40.4 bits (93), Expect(2) = 2e-11
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 337 KTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNS 371
[59][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 55.1 bits (131), Expect(2) = 2e-11
Identities = 32/93 (34%), Positives = 53/93 (56%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE G+S V ++ + +S +G E + + I D EA+ E+
Sbjct: 238 EEIAEKMGISPEK-VREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEASYAL 296
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++ L +V+ SL PRE++VLR RFG+DDGR ++
Sbjct: 297 LREQLNEVLQSLTPREQKVLRLRFGLDDGRART 329
Score = 37.4 bits (85), Expect(2) = 2e-11
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ RKL+ R+
Sbjct: 328 RTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRS 361
[60][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 53.1 bits (126), Expect(2) = 3e-11
Identities = 23/52 (44%), Positives = 37/52 (71%)
Frame = -2
Query: 327 EVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + D + E + K +K+DLE V+++LNPRE+ VLR R+G+DDGR+K+
Sbjct: 494 DTLIDDYTEHPEGETGKVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKT 545
Score = 38.5 bits (88), Expect(2) = 3e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG + V+RERIRQ E+ A RKL++ RN
Sbjct: 544 KTLEEIGNVFSVTRERIRQIEAKALRKLRQPSRN 577
[61][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 52.0 bits (123), Expect(2) = 4e-11
Identities = 32/93 (34%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V +L + +S +G + + + I D EA E +
Sbjct: 246 EEIAEEMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYEL 304
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 305 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 337
Score = 39.3 bits (90), Expect(2) = 4e-11
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 336 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 369
[62][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 52.0 bits (123), Expect(2) = 4e-11
Identities = 32/93 (34%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V +L + +S +G + + + I D EA E +
Sbjct: 244 EEIAEEMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 4e-11
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[63][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 52.0 bits (123), Expect(2) = 4e-11
Identities = 32/93 (34%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V +L + +S +G + + + I D EA E +
Sbjct: 243 EEIAEEMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYEL 301
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 302 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 334
Score = 39.3 bits (90), Expect(2) = 4e-11
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 333 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 366
[64][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 50.8 bits (120), Expect(2) = 6e-11
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D +A E +K+ LE+V++SL PRE++VLR RFG+DDGR
Sbjct: 287 IGEEEDSHLGDFIEDQDAPAPAEAASFTLLKEQLEEVLESLTPREEKVLRLRFGLDDGRA 346
Query: 177 KS 172
++
Sbjct: 347 RT 348
Score = 39.7 bits (91), Expect(2) = 6e-11
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 347 RTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRS 380
[65][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 52.0 bits (123), Expect(2) = 6e-11
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D +A+ E +++ LE+V++SL PREK+VLR RFG+DDGR
Sbjct: 260 IGEEEDSHLGDFIEDEDAQAPAEAASFMLLREQLEEVLNSLTPREKRVLRLRFGLDDGRA 319
Query: 177 KS 172
++
Sbjct: 320 RT 321
Score = 38.5 bits (88), Expect(2) = 6e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ A RKL+ R+
Sbjct: 320 RTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRS 353
[66][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 373 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 430
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 431 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 463
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 462 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 495
[67][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 349 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 406
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 407 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 439
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 438 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 471
[68][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 341 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 398
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 399 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 431
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 430 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 463
[69][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 339 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 396
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 397 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 429
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 428 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 461
[70][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 52.4 bits (124), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 331 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNL 388
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 389 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 421
Score = 37.7 bits (86), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 420 KTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRN 453
[71][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 330 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 387
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 388 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 420
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 419 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 452
[72][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 328 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 385
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 386 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 418
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 417 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 450
[73][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 326 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 383
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 384 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 416
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 415 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 448
[74][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 321 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 378
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 379 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 411
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 410 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 443
[75][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 321 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 378
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 379 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 411
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 410 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 443
[76][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 320 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 377
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 378 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 410
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 409 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 442
[77][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 317 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 374
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 375 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 407
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 406 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 439
[78][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 52.4 bits (124), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 314 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNL 371
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 372 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 404
Score = 37.7 bits (86), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 403 KTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRN 436
[79][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 310 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 367
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 368 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 400
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 399 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 432
[80][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 52.0 bits (123), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 305 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNL 362
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 363 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 395
Score = 38.1 bits (87), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 394 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 427
[81][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 51.6 bits (122), Expect(2) = 8e-11
Identities = 32/93 (34%), Positives = 52/93 (55%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AEA +S V ++ + +S +G E + + I D +A E
Sbjct: 244 EEIAEAMEISVER-VREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFML 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE+V+D+L RE++VLR RFG+DDGR ++
Sbjct: 303 LKEQLEEVLDTLTEREERVLRLRFGLDDGRART 335
Score = 38.5 bits (88), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRS 367
[82][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 50.8 bits (120), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V +L + +S +G + + + I D +A E +
Sbjct: 244 EEIAEEMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[83][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 50.8 bits (120), Expect(2) = 8e-11
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V +L + +S +G + + + I D +A E +
Sbjct: 243 EEIAEDMDLT-PDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYEL 301
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 302 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 334
Score = 39.3 bits (90), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 333 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 366
[84][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 50.8 bits (120), Expect(2) = 8e-11
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A EE + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 268 IGEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRT 327
Query: 177 KS 172
++
Sbjct: 328 RT 329
Score = 39.3 bits (90), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 328 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 361
[85][TOP]
>UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L1K5_THERP
Length = 340
Score = 48.9 bits (115), Expect(2) = 8e-11
Identities = 27/95 (28%), Positives = 54/95 (56%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AEA + + + +R+ +S + L + + ++IAD A+ EE +
Sbjct: 208 EEIAEAMSVQPEKIAQIVRAAQRA-VSLDQPLSEEDETSLGDLIADELAQSPEELAEESL 266
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKSPA 166
M++D+ ++++ L PRE+ VL+ R+G+ DG ++ A
Sbjct: 267 MRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLA 301
Score = 41.2 bits (95), Expect(2) = 8e-11
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L E+G++LG+SRER+RQ E+ A RKL++ R
Sbjct: 298 RTLAEVGDLLGISRERVRQIENEALRKLRRIAR 330
[86][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 50.8 bits (120), Expect(2) = 8e-11
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ E + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 236 IGEEDDSHLGDFIEDSEAQSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 295
Query: 177 KS 172
++
Sbjct: 296 RT 297
Score = 39.3 bits (90), Expect(2) = 8e-11
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 296 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 329
[87][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 57.0 bits (136), Expect(2) = 8e-11
Identities = 32/93 (34%), Positives = 57/93 (61%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +S + + L + + +S E +G E ++IAD EA E+L
Sbjct: 142 EEIAEEMNISEKKAKVLLEIVQ-GIVSLEEPVGEDENGKLGDIIADKEAVDPVEELESML 200
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ +++V+ +L PRE++VLR RFG+DDG++++
Sbjct: 201 LKEQVDEVLSTLAPREEKVLRLRFGLDDGKIRT 233
Score = 33.1 bits (74), Expect(2) = 8e-11
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -3
Query: 176 RALPEIGEMLG-VSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ LG +SRER+RQ E+ A ++L+ R+
Sbjct: 232 RTLEEVGKELGGISRERVRQIETKALKRLRHPNRS 266
[88][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 51.6 bits (122), Expect(2) = 1e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 288 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTL 345
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 346 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 378
Score = 38.1 bits (87), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 377 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 410
[89][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 51.6 bits (122), Expect(2) = 1e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 288 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTL 345
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 346 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 378
Score = 38.1 bits (87), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 377 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 410
[90][TOP]
>UniRef100_A9BHB2 RNA polymerase sigma factor n=1 Tax=Petrotoga mobilis SJ95
RepID=A9BHB2_PETMO
Length = 414
Score = 54.7 bits (130), Expect(2) = 1e-10
Identities = 27/68 (39%), Positives = 45/68 (66%)
Frame = -2
Query: 375 ISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFG 196
ISG++D E + + D EA Q EE ++ +K+++EKV++SL P+E VL+ R+G
Sbjct: 304 ISGSDD----EEAYIGDFLEDSEADQPEEIAVRMILKEEIEKVLESLRPKEATVLKMRYG 359
Query: 195 MDDGRMKS 172
+ DG+MK+
Sbjct: 360 LLDGKMKT 367
Score = 35.0 bits (79), Expect(2) = 1e-10
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQPVS 54
+ L E+G V+RERIRQ E A RKL+ R+ + +S
Sbjct: 366 KTLEEVGNFFNVTRERIRQIEVKALRKLRHPSRSLQLKEIS 406
[91][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + MKK LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 279 IGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRT 338
Query: 177 KS 172
++
Sbjct: 339 RT 340
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 339 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 372
[92][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + MKK LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 279 IGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRT 338
Query: 177 KS 172
++
Sbjct: 339 RT 340
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 339 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 372
[93][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + MKK LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 279 IGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRT 338
Query: 177 KS 172
++
Sbjct: 339 RT 340
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 339 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 372
[94][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
RepID=A5VJI3_LACRD
Length = 380
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + MKK LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 279 IGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRT 338
Query: 177 KS 172
++
Sbjct: 339 RT 340
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 339 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 372
[95][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XRX4_LACRE
Length = 380
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + MKK LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 279 IGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRT 338
Query: 177 KS 172
++
Sbjct: 339 RT 340
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 339 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 372
[96][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V +L + +S +G + + + I D EA + +
Sbjct: 242 EEIAEDMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYEL 300
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 301 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[97][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V +L + +S +G + + + I D EA + +
Sbjct: 242 EEIAEDMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYEL 300
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 301 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[98][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V +L + +S +G + + + I D EA + +
Sbjct: 242 EEIAEDMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYEL 300
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 301 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[99][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 50.1 bits (118), Expect(2) = 1e-10
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+D+L RE+ VLR RFG+DDGR
Sbjct: 272 IGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRT 331
Query: 177 KS 172
++
Sbjct: 332 RT 333
Score = 39.7 bits (91), Expect(2) = 1e-10
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G++ GV+RERIRQ E+ A RKL+ R++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSN 366
[100][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V +L + +S +G + + + I D +A E +
Sbjct: 241 EEIAEEMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYEL 299
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 300 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 332
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 331 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 364
[101][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 50.1 bits (118), Expect(2) = 1e-10
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+D+L RE+ VLR RFG+DDGR
Sbjct: 271 IGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRT 330
Query: 177 KS 172
++
Sbjct: 331 RT 332
Score = 39.7 bits (91), Expect(2) = 1e-10
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G++ GV+RERIRQ E+ A RKL+ R++
Sbjct: 331 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSN 365
[102][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 50.1 bits (118), Expect(2) = 1e-10
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+D+L RE+ VLR RFG+DDGR
Sbjct: 271 IGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRT 330
Query: 177 KS 172
++
Sbjct: 331 RT 332
Score = 39.7 bits (91), Expect(2) = 1e-10
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G++ GV+RERIRQ E+ A RKL+ R++
Sbjct: 331 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSN 365
[103][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V +L + +S +G + + + I D EA + +
Sbjct: 240 EEIAEDMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYEL 298
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 299 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 331
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 330 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 363
[104][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 50.1 bits (118), Expect(2) = 1e-10
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+D+L RE+ VLR RFG+DDGR
Sbjct: 263 IGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEVLDTLTDREENVLRLRFGLDDGRT 322
Query: 177 KS 172
++
Sbjct: 323 RT 324
Score = 39.7 bits (91), Expect(2) = 1e-10
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G++ GV+RERIRQ E+ A RKL+ R++
Sbjct: 323 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSN 357
[105][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C2E1K8_9LACO
Length = 364
Score = 50.1 bits (118), Expect(2) = 1e-10
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+D+L RE+ VLR RFG+DDGR
Sbjct: 263 IGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEVLDTLTDREENVLRLRFGLDDGRT 322
Query: 177 KS 172
++
Sbjct: 323 RT 324
Score = 39.7 bits (91), Expect(2) = 1e-10
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G++ GV+RERIRQ E+ A RKL+ R++
Sbjct: 323 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSN 357
[106][TOP]
>UniRef100_C4CMU8 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CMU8_9CHLR
Length = 341
Score = 52.4 bits (124), Expect(2) = 1e-10
Identities = 29/89 (32%), Positives = 55/89 (61%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEVAEA + + ++ +R+ IS + +G E +++IAD A+ EE+ ++
Sbjct: 210 EEVAEAMSVPPEKVEQFIRAAQRT-ISLEKPIGEDEEGTLADLIADEVARSPEEEAVETL 268
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDG 184
+++D+ +V++ L PRE+ VL+ RFG+ +G
Sbjct: 269 LQRDVAEVLEELTPRERLVLQLRFGLGNG 297
Score = 37.4 bits (85), Expect(2) = 1e-10
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = -3
Query: 170 LPEIGEMLGVSRERIRQTESCAFRKLKKK 84
L E+G+ L +SRER+RQ ES A RKL+++
Sbjct: 302 LSEVGQQLDISRERVRQIESEALRKLRRR 330
[107][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 51.6 bits (122), Expect(2) = 1e-10
Identities = 21/48 (43%), Positives = 36/48 (75%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + EE + K ++ DLE V++SL+PRE+ V+R R+G+DDGR+K+
Sbjct: 355 EADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKT 402
Score = 37.7 bits (86), Expect(2) = 1e-10
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RER+RQ E+ A RKL++ R+S
Sbjct: 401 KTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSS 435
[108][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 51.6 bits (122), Expect(2) = 1e-10
Identities = 21/48 (43%), Positives = 36/48 (75%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + EE + K ++ DLE V++SL+PRE+ V+R R+G+DDGR+K+
Sbjct: 355 EADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKT 402
Score = 37.7 bits (86), Expect(2) = 1e-10
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RER+RQ E+ A RKL++ R+S
Sbjct: 401 KTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSS 435
[109][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 51.6 bits (122), Expect(2) = 1e-10
Identities = 21/48 (43%), Positives = 36/48 (75%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + EE + K ++ DLE V++SL+PRE+ V+R R+G+DDGR+K+
Sbjct: 338 EADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKT 385
Score = 37.7 bits (86), Expect(2) = 1e-10
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RER+RQ E+ A RKL++ R+S
Sbjct: 384 KTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSS 418
[110][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 50.1 bits (118), Expect(2) = 1e-10
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + MKK LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 280 IGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRT 339
Query: 177 KS 172
++
Sbjct: 340 RT 341
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 340 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 373
[111][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
RepID=B2GBZ9_LACF3
Length = 380
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 26/76 (34%), Positives = 42/76 (55%)
Frame = -2
Query: 399 LLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREK 220
+L + +S +G + + + I D +A + + MKK LE V+D+L RE+
Sbjct: 265 ILKISQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDREE 324
Query: 219 QVLRWRFGMDDGRMKS 172
VLR RFG+DDGR ++
Sbjct: 325 NVLRLRFGLDDGRTRT 340
Score = 38.9 bits (89), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G + GV+RERIRQ E+ A RKL+ R+
Sbjct: 339 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRS 372
[112][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 50.1 bits (118), Expect(2) = 1e-10
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA+ + +
Sbjct: 244 EEIGEEMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[113][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 50.1 bits (118), Expect(2) = 1e-10
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA+ + +
Sbjct: 9 EEIGEEMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYEL 67
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 68 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 100
Score = 39.3 bits (90), Expect(2) = 1e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 99 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 132
[114][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 321 IGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRT 380
Query: 177 KS 172
++
Sbjct: 381 RT 382
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 381 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 414
[115][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 315 IGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRT 374
Query: 177 KS 172
++
Sbjct: 375 RT 376
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 375 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 408
[116][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 315 IGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRT 374
Query: 177 KS 172
++
Sbjct: 375 RT 376
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 375 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 408
[117][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 315 IGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRT 374
Query: 177 KS 172
++
Sbjct: 375 RT 376
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 375 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 408
[118][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 48.9 bits (115), Expect(2) = 2e-10
Identities = 19/48 (39%), Positives = 36/48 (75%)
Frame = -2
Query: 315 DPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ + + E+++ K +++DLE V+++L RE+ VL+ R+G+DDGRMK+
Sbjct: 316 ESDGETPEDRVAKVLLREDLESVLETLTARERDVLKLRYGLDDGRMKT 363
Score = 40.0 bits (92), Expect(2) = 2e-10
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
+ L EIG++ V+RERIRQ E+ A RKL+ RNS
Sbjct: 362 KTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 396
[119][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 50.8 bits (120), Expect(2) = 2e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 267 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTL 324
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 325 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKT 357
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 356 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 389
[120][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 50.8 bits (120), Expect(2) = 2e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 266 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTL 323
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 324 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKT 356
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 355 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 388
[121][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 50.8 bits (120), Expect(2) = 2e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 264 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTL 321
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 322 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKT 354
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 353 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 386
[122][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 50.8 bits (120), Expect(2) = 2e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 264 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTL 321
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 322 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKT 354
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 353 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 386
[123][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 50.8 bits (120), Expect(2) = 2e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 263 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTL 320
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 321 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKT 353
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 352 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 385
[124][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 50.8 bits (120), Expect(2) = 2e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 263 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTL 320
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 321 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKT 353
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 352 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 385
[125][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 50.8 bits (120), Expect(2) = 2e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + E+ + K
Sbjct: 263 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTL 320
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 321 LREDLEGVLATLSPRERDVLRLRYGIDDGRMKT 353
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 352 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 385
[126][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 29/93 (31%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +S V ++ + +S +G + + + I D +A + +
Sbjct: 246 EEIAEEMDIS-PDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYEL 304
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 305 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 337
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 336 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 369
[127][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA+ + +
Sbjct: 244 EEIGEEMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVIDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[128][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA E + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 268 IGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 327
Query: 177 KS 172
++
Sbjct: 328 RT 329
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 328 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 361
[129][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA E + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 268 IGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 327
Query: 177 KS 172
++
Sbjct: 328 RT 329
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 328 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 361
[130][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 50.1 bits (118), Expect(2) = 2e-10
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D +A E +K+ LE+V+++L PRE++VLR RFG+DDGR
Sbjct: 267 IGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRA 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 38.9 bits (89), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGQYFGVTRERIRQIEAKALRKLRHPSRS 360
[131][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[132][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[133][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[134][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[135][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[136][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[137][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[138][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[139][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[140][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[141][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[142][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[143][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[144][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 266 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 325
Query: 177 KS 172
++
Sbjct: 326 RT 327
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 326 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 359
[145][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 251 IGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRT 310
Query: 177 KS 172
++
Sbjct: 311 RT 312
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 311 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 344
[146][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 241 IGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 300
Query: 177 KS 172
++
Sbjct: 301 RT 302
Score = 39.3 bits (90), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 301 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 334
[147][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 50.4 bits (119), Expect(2) = 2e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + +++ E + K
Sbjct: 308 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTL 365
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 366 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 398
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 397 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 430
[148][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 50.4 bits (119), Expect(2) = 2e-10
Identities = 31/93 (33%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + +++ E + K
Sbjct: 295 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTL 352
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 353 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 385
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A RKL+ RN
Sbjct: 384 KTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN 417
[149][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 50.4 bits (119), Expect(2) = 2e-10
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G N + I D +A E + +K+ LE+V+D+L RE+ VLR RFGMDDGR
Sbjct: 224 IGEENDSNLGDFIEDHDAPAPAEAAAYELLKEQLEEVLDTLTEREENVLRLRFGMDDGRT 283
Query: 177 KS 172
++
Sbjct: 284 RT 285
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ A RKL+ R+
Sbjct: 284 RTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRS 317
[150][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 29/93 (31%), Positives = 51/93 (54%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE L+ V ++ + +S +G + + + I D +A + + +
Sbjct: 245 EEIAEKMDLTPEK-VREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYEL 303
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 304 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 336
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 335 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 368
[151][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 244 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[152][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 244 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[153][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 244 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[154][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 244 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[155][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 244 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[156][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 244 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[157][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 244 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[158][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 244 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[159][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 49.7 bits (117), Expect(2) = 3e-10
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D +A + +K+ LE V+D+L PRE++VLR RFG+DDGR
Sbjct: 272 IGEEEDSHLGDFIEDQDAPAPADAASFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRA 331
Query: 177 KS 172
++
Sbjct: 332 RT 333
Score = 38.5 bits (88), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRS 365
[160][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 242 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 300
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 301 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[161][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 242 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 300
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 301 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[162][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 242 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 300
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 301 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[163][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 242 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 300
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 301 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[164][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 242 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 300
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 301 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[165][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+ E L+ V +L + +S +G + + + I D EA + +
Sbjct: 242 EEIGEEMDLAPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYEL 300
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 301 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[166][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 271 IGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRT 330
Query: 177 KS 172
++
Sbjct: 331 RT 332
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 331 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 364
[167][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 271 IGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRT 330
Query: 177 KS 172
++
Sbjct: 331 RT 332
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 331 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 364
[168][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEVAE L+ V +L + +S +G + + + I D +A + +
Sbjct: 241 EEVAEEMDLTPEK-VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYEL 299
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 300 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 332
Score = 39.3 bits (90), Expect(2) = 3e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 331 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 364
[169][TOP]
>UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus
DSM 20075 RepID=C9LZ42_LACHE
Length = 370
Score = 48.5 bits (114), Expect(2) = 3e-10
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+++L RE+ VLR RFG+DDGR
Sbjct: 269 IGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRT 328
Query: 177 KS 172
++
Sbjct: 329 RT 330
Score = 39.7 bits (91), Expect(2) = 3e-10
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G++ GV+RERIRQ E+ A RKL+ R++
Sbjct: 329 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSN 363
[170][TOP]
>UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus
RepID=C2KFH9_9LACO
Length = 370
Score = 48.5 bits (114), Expect(2) = 3e-10
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+++L RE+ VLR RFG+DDGR
Sbjct: 269 IGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRT 328
Query: 177 KS 172
++
Sbjct: 329 RT 330
Score = 39.7 bits (91), Expect(2) = 3e-10
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G++ GV+RERIRQ E+ A RKL+ R++
Sbjct: 329 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSN 363
[171][TOP]
>UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus
RepID=C2HPX4_LACAC
Length = 370
Score = 48.5 bits (114), Expect(2) = 3e-10
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+++L RE+ VLR RFG+DDGR
Sbjct: 269 IGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRT 328
Query: 177 KS 172
++
Sbjct: 329 RT 330
Score = 39.7 bits (91), Expect(2) = 3e-10
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G++ GV+RERIRQ E+ A RKL+ R++
Sbjct: 329 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSN 363
[172][TOP]
>UniRef100_C2EK73 RNA polymerase sigma factor n=1 Tax=Lactobacillus ultunensis DSM
16047 RepID=C2EK73_9LACO
Length = 370
Score = 48.5 bits (114), Expect(2) = 3e-10
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+++L RE+ VLR RFG+DDGR
Sbjct: 269 IGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRT 328
Query: 177 KS 172
++
Sbjct: 329 RT 330
Score = 39.7 bits (91), Expect(2) = 3e-10
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G++ GV+RERIRQ E+ A RKL+ R++
Sbjct: 329 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSN 363
[173][TOP]
>UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC
4571 RepID=A8YVM2_LACH4
Length = 356
Score = 48.5 bits (114), Expect(2) = 3e-10
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+++L RE+ VLR RFG+DDGR
Sbjct: 255 IGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRT 314
Query: 177 KS 172
++
Sbjct: 315 RT 316
Score = 39.7 bits (91), Expect(2) = 3e-10
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G++ GV+RERIRQ E+ A RKL+ R++
Sbjct: 315 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSN 349
[174][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
RepID=C2C209_LISGR
Length = 389
Score = 48.9 bits (115), Expect(2) = 4e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 288 IGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 347
Query: 177 KS 172
++
Sbjct: 348 RT 349
Score = 38.9 bits (89), Expect(2) = 4e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G + GV+RERIRQ E+ A RKL+ R+
Sbjct: 348 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRS 381
[175][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 48.5 bits (114), Expect(2) = 4e-10
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ LS V ++ + +S +G + + + I D EA + +
Sbjct: 244 EEIAKEMELS-TDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 302
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 303 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRT 335
Score = 39.3 bits (90), Expect(2) = 4e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 367
[176][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 48.5 bits (114), Expect(2) = 4e-10
Identities = 31/93 (33%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EEV + LS V +L + +S +G + + + I D EA + +
Sbjct: 242 EEVGKEMDLS-PDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYEL 300
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 301 LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 4e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[177][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 49.3 bits (116), Expect(2) = 4e-10
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D +A E +K+ LE+V+++L PRE++VLR RFG+DDGR
Sbjct: 271 IGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRT 330
Query: 177 KS 172
++
Sbjct: 331 RT 332
Score = 38.5 bits (88), Expect(2) = 4e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ A RKL+ R+
Sbjct: 331 RTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRS 364
[178][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
RepID=C7CSZ1_ENTFA
Length = 368
Score = 48.5 bits (114), Expect(2) = 4e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 4e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[179][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
RepID=RPOD_ENTFA
Length = 368
Score = 48.5 bits (114), Expect(2) = 4e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 4e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[180][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 49.3 bits (116), Expect(2) = 4e-10
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D +A E +K+ LE+V+++L PRE++VLR RFG+DDGR
Sbjct: 266 IGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRT 325
Query: 177 KS 172
++
Sbjct: 326 RT 327
Score = 38.5 bits (88), Expect(2) = 4e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ A RKL+ R+
Sbjct: 326 RTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRS 359
[181][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 54.3 bits (129), Expect(2) = 4e-10
Identities = 32/93 (34%), Positives = 52/93 (55%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +G+ + LL R +S +GS E + I D EA E +I +
Sbjct: 188 EELAEESGIP-AEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISEL 246
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ D+ V+ +L+ RE+QV+R RFG+DDG+ ++
Sbjct: 247 LHTDIRHVLATLDEREQQVIRLRFGLDDGQPRT 279
Score = 33.5 bits (75), Expect(2) = 4e-10
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L +IG++ G+SRER+RQ E KL+ +R
Sbjct: 278 RTLDQIGKLFGLSRERVRQIEREVMAKLRNGER 310
[182][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
13335 RepID=C8PAI1_9LACO
Length = 382
Score = 48.1 bits (113), Expect(2) = 5e-10
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K+ LE+V+D+L RE+ VLR RFG++DGR
Sbjct: 281 IGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRT 340
Query: 177 KS 172
++
Sbjct: 341 RT 342
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G + GV+RERIRQ E+ A RKL+ R++
Sbjct: 341 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSN 375
[183][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 48.1 bits (113), Expect(2) = 5e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 279 IGEEDDSHLGDFIEDQEAISPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 338
Query: 177 KS 172
++
Sbjct: 339 RT 340
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 339 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 372
[184][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F68_PEDPA
Length = 379
Score = 48.1 bits (113), Expect(2) = 5e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 278 IGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEGVLDTLTDREENVLRLRFGLDDGRT 337
Query: 177 KS 172
++
Sbjct: 338 RT 339
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 338 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 371
[185][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 48.1 bits (113), Expect(2) = 5e-10
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -2
Query: 327 EVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ I D EA + + +K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 282 DFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT 333
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[186][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 48.1 bits (113), Expect(2) = 5e-10
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D E + + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 268 IGEEDDSHLGDFIEDQEVQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 327
Query: 177 KS 172
++
Sbjct: 328 RT 329
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 328 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 361
[187][TOP]
>UniRef100_C9AAM5 RNA polymerase sigma-43 factor n=3 Tax=Enterococcus casseliflavus
RepID=C9AAM5_ENTCA
Length = 368
Score = 48.1 bits (113), Expect(2) = 5e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGIDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[188][TOP]
>UniRef100_C8ZYV7 RNA polymerase sigma-43 factor n=1 Tax=Enterococcus gallinarum EG2
RepID=C8ZYV7_ENTGA
Length = 368
Score = 48.1 bits (113), Expect(2) = 5e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGIDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[189][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 48.1 bits (113), Expect(2) = 5e-10
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A+ + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 265 IGEEDDSHLGDFIEDQDAQSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 324
Query: 177 KS 172
++
Sbjct: 325 RT 326
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 325 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 358
[190][TOP]
>UniRef100_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP
1055/1 RepID=B7GEJ9_PHATR
Length = 329
Score = 51.2 bits (121), Expect(2) = 5e-10
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = -2
Query: 357 LGSPEL-LNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGR 181
LG P+ L +V+ DPEA+ EE Q +K D+ +++ +LN RE+ V+R RFG+DDG+
Sbjct: 225 LGGPDGGLTLGDVMGDPEAQPAEEASY-QMLKDDISRLICTLNSREQAVIRMRFGLDDGK 283
Query: 180 MKS 172
K+
Sbjct: 284 AKT 286
Score = 36.2 bits (82), Expect(2) = 5e-10
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG V+RERIRQ ES A KL++ RN
Sbjct: 285 KTLEEIGRRFSVTRERIRQIESRALHKLRQPYRN 318
[191][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
RepID=C0XLP2_LACHI
Length = 389
Score = 47.8 bits (112), Expect(2) = 6e-10
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 288 IGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRT 347
Query: 177 KS 172
++
Sbjct: 348 RT 349
Score = 39.3 bits (90), Expect(2) = 6e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 348 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 381
[192][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
11577 RepID=C0WTG9_LACBU
Length = 389
Score = 47.8 bits (112), Expect(2) = 6e-10
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 288 IGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRT 347
Query: 177 KS 172
++
Sbjct: 348 RT 349
Score = 39.3 bits (90), Expect(2) = 6e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 348 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 381
[193][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 47.8 bits (112), Expect(2) = 6e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA + Q +K+ LE V+D+L RE+ VLR RFG++DGR
Sbjct: 277 IGEEDDSHLGDFIEDNEAVSPADSAAYQMLKEQLESVLDTLTDREENVLRLRFGLEDGRT 336
Query: 177 KS 172
++
Sbjct: 337 RT 338
Score = 39.3 bits (90), Expect(2) = 6e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 337 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 370
[194][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 47.8 bits (112), Expect(2) = 6e-10
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A LS V ++ + +S +G + + + I D EA + +
Sbjct: 245 EEIAAEMELS-TDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYEL 303
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG+DDGR ++
Sbjct: 304 LKEQLEDVLDTLTEREENVLRLRFGLDDGRTRT 336
Score = 39.3 bits (90), Expect(2) = 6e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 335 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 368
[195][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 47.8 bits (112), Expect(2) = 6e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIPDDEAPAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 6e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[196][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 47.8 bits (112), Expect(2) = 6e-10
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A ++ + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 263 IGEEDDSHLGDFIEDQDAMAPQDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 322
Query: 177 KS 172
++
Sbjct: 323 RT 324
Score = 39.3 bits (90), Expect(2) = 6e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 323 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 356
[197][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 47.8 bits (112), Expect(2) = 6e-10
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A ++ + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 260 IGEEDDSHLGDFIEDQDATAPQDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 319
Query: 177 KS 172
++
Sbjct: 320 RT 321
Score = 39.3 bits (90), Expect(2) = 6e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 320 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 353
[198][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 47.4 bits (111), Expect(2) = 8e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 276 IGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRT 335
Query: 177 KS 172
++
Sbjct: 336 RT 337
Score = 39.3 bits (90), Expect(2) = 8e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 336 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 369
[199][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 47.4 bits (111), Expect(2) = 8e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 276 IGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRT 335
Query: 177 KS 172
++
Sbjct: 336 RT 337
Score = 39.3 bits (90), Expect(2) = 8e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 336 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 369
[200][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
J2-071 RepID=UPI0000F53BBC
Length = 374
Score = 47.8 bits (112), Expect(2) = 8e-10
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 273 IGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 332
Query: 177 KS 172
++
Sbjct: 333 RT 334
Score = 38.9 bits (89), Expect(2) = 8e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G + GV+RERIRQ E+ A RKL+ R+
Sbjct: 333 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRS 366
[201][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
RepID=RPOD_LISMO
Length = 374
Score = 47.8 bits (112), Expect(2) = 8e-10
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 273 IGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 332
Query: 177 KS 172
++
Sbjct: 333 RT 334
Score = 38.9 bits (89), Expect(2) = 8e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G + GV+RERIRQ E+ A RKL+ R+
Sbjct: 333 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRS 366
[202][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
Length = 374
Score = 47.8 bits (112), Expect(2) = 8e-10
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 273 IGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRT 332
Query: 177 KS 172
++
Sbjct: 333 RT 334
Score = 38.9 bits (89), Expect(2) = 8e-10
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G + GV+RERIRQ E+ A RKL+ R+
Sbjct: 333 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRS 366
[203][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 47.4 bits (111), Expect(2) = 8e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 273 IGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRT 332
Query: 177 KS 172
++
Sbjct: 333 RT 334
Score = 39.3 bits (90), Expect(2) = 8e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 333 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 366
[204][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 50.8 bits (120), Expect(2) = 8e-10
Identities = 32/93 (34%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A LS V +L + +S +G E + + I D +A E
Sbjct: 241 EEIAAEMDLS-EEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFSL 299
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ L +V+D+L PRE++VLR RFG+DDGR ++
Sbjct: 300 LKEQLVEVLDTLTPREQKVLRLRFGLDDGRART 332
Score = 35.8 bits (81), Expect(2) = 8e-10
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 331 RTLEEVGKKFDVTRERIRQIEAKALRKLRHPSRS 364
[205][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2V7P9_SULSY
Length = 590
Score = 50.8 bits (120), Expect(2) = 1e-09
Identities = 28/88 (31%), Positives = 51/88 (57%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ G+ V +L + +S +GS E + + I D E+ ++KQ
Sbjct: 457 EEIAKKAGMP-ADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQA 515
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDD 187
++ L++V+ +L+ RE+QVLR+RFG++D
Sbjct: 516 LRLQLDEVLSTLSEREEQVLRYRFGLED 543
Score = 35.4 bits (80), Expect(2) = 1e-09
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -3
Query: 170 LPEIGEMLGVSRERIRQTESCAFRKLKKKKRNSNSQP 60
L ++G+ GV+RERIRQ E+ A RKL+ R +P
Sbjct: 549 LEQVGKRFGVTRERIRQIEAKALRKLRHPHRAKYLKP 585
[206][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 50.8 bits (120), Expect(2) = 1e-09
Identities = 30/93 (32%), Positives = 55/93 (59%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE+ ++ L ++ + IS +G E + I + + + ++ + K
Sbjct: 271 EEIAESMEMTIEKL-RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPDQDVAKNL 328
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++DLE V+ +L+PRE+ VLR R+G+DDGRMK+
Sbjct: 329 LREDLEGVLATLSPRERDVLRLRYGLDDGRMKT 361
Score = 35.4 bits (80), Expect(2) = 1e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L EIG++ V+RERIRQ E+ A KL+ RN
Sbjct: 360 KTLEEIGQIFDVTRERIRQIEAKALLKLRHPNRN 393
[207][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 47.0 bits (110), Expect(2) = 1e-09
Identities = 29/93 (31%), Positives = 49/93 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ LS V ++ + +S +G N + I D +A + +
Sbjct: 236 EEIAKEMELS-TDKVREIMKISQEPVSLETPIGEENDSNLGDFIEDQDALAPADAASYEL 294
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ LE V+D+L RE+ VLR RFG++DGR ++
Sbjct: 295 LKEQLEHVLDTLTEREENVLRLRFGLEDGRSRT 327
Score = 39.3 bits (90), Expect(2) = 1e-09
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 326 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 359
[208][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
RepID=A8U8N7_9LACT
Length = 373
Score = 47.8 bits (112), Expect(2) = 1e-09
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 272 IGEEDDSHLGDFIEDHDATSPAENAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRN 331
Query: 177 KS 172
++
Sbjct: 332 RT 333
Score = 38.1 bits (87), Expect(2) = 1e-09
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L ++G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEDVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[209][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R970_THETN
Length = 372
Score = 50.1 bits (118), Expect(2) = 1e-09
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ G+ V +L + +S +G E + + I D +A E
Sbjct: 241 EELAKEMGMP-EEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAYTM 299
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ L V+D+L PRE++VLR RFG+DDGR ++
Sbjct: 300 LKEQLMDVLDTLTPREEKVLRLRFGLDDGRART 332
Score = 35.8 bits (81), Expect(2) = 1e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 331 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 364
[210][TOP]
>UniRef100_C2FI52 RNA polymerase sigma factor n=2 Tax=Lactobacillus plantarum
RepID=C2FI52_LACPL
Length = 368
Score = 46.6 bits (109), Expect(2) = 1e-09
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLDTLTDREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 1e-09
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[211][TOP]
>UniRef100_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=1
Tax=Heterosigma akashiwo RepID=A5JEM2_9STRA
Length = 404
Score = 48.9 bits (115), Expect(2) = 2e-09
Identities = 29/98 (29%), Positives = 58/98 (59%), Gaps = 6/98 (6%)
Frame = -2
Query: 447 EVAEANGLS*RGLVLY-LLLPKRSQISGTEDLGSP-ELLNPSEVIADPEAKQT----EEQ 286
E+AEA GL+ + +V Y + K S I T +G+ + S++ K + EE
Sbjct: 255 ELAEATGLTPQKIVFYDTVKDKVSSIDKTVGIGTKTNSMEKSQIAISDMCKDSRNKPEET 314
Query: 285 LIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ +++D+ +++++L+PRE+ V+R R+G+DDG +++
Sbjct: 315 AQVESLRQDISRLINTLSPREQDVVRMRYGLDDGEIRT 352
Score = 36.6 bits (83), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L EIG + V+RER+RQ E+ A KL++ RN
Sbjct: 351 RTLEEIGSIFSVTRERVRQIEARALHKLRQPYRN 384
[212][TOP]
>UniRef100_C6VQS5 RNA polymerase sigma factor n=1 Tax=Lactobacillus plantarum JDM1
RepID=C6VQS5_LACPJ
Length = 368
Score = 46.2 bits (108), Expect(2) = 2e-09
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A + + +K+ LE V+D+L RE+ VLR RFG+DDGR
Sbjct: 267 IGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLDTLTNREENVLRLRFGLDDGRT 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 39.3 bits (90), Expect(2) = 2e-09
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 360
[213][TOP]
>UniRef100_Q79VF3 RNA polymerase sigma factor n=1 Tax=Corynebacterium glutamicum
RepID=Q79VF3_CORGL
Length = 331
Score = 53.1 bits (126), Expect(2) = 2e-09
Identities = 29/89 (32%), Positives = 47/89 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +G+ + LL R +S +G+ E + I D EA E ++
Sbjct: 200 EELAEESGIE-ESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASM 258
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDG 184
D+ V+++L PRE+ V+R R+G+DDG
Sbjct: 259 RHSDIRAVLNTLEPREQDVIRLRYGLDDG 287
Score = 32.3 bits (72), Expect(2) = 2e-09
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L +IG G+SRER+RQ E KL+ +R S
Sbjct: 290 RTLDQIGRRFGLSRERVRQIEREVMSKLRDGERAS 324
[214][TOP]
>UniRef100_A4QES7 RNA polymerase sigma factor n=2 Tax=Corynebacterium
RepID=A4QES7_CORGB
Length = 331
Score = 53.1 bits (126), Expect(2) = 2e-09
Identities = 29/89 (32%), Positives = 47/89 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +G+ + LL R +S +G+ E + I D EA E ++
Sbjct: 200 EELAEESGIE-ESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASM 258
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDG 184
D+ V+++L PRE+ V+R R+G+DDG
Sbjct: 259 RHSDIRAVLNTLEPREQDVIRLRYGLDDG 287
Score = 32.3 bits (72), Expect(2) = 2e-09
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L +IG G+SRER+RQ E KL+ +R S
Sbjct: 290 RTLDQIGRRFGLSRERVRQIEREVMSKLRDGERAS 324
[215][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
RepID=A4TCQ2_MYCGI
Length = 329
Score = 52.8 bits (125), Expect(2) = 2e-09
Identities = 32/93 (34%), Positives = 52/93 (55%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +G+ + LL R +S +GS E + I D EA E +I +
Sbjct: 198 EELAEESGIPVEK-INDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISEL 256
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ D+ V+ +L+ RE+QV+R RFG+DDG+ ++
Sbjct: 257 LHTDIRYVLATLDEREQQVIRLRFGLDDGQPRT 289
Score = 32.7 bits (73), Expect(2) = 2e-09
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L +IG++ G+SRER+RQ E KL+ R
Sbjct: 288 RTLDQIGKLFGLSRERVRQIEREVMAKLRNGDR 320
[216][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 45.8 bits (107), Expect(2) = 2e-09
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = -2
Query: 336 NPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
N + I D +A + + +K+ LE+V+D+L RE+ VLR RFG++DGR ++
Sbjct: 222 NLGDFIEDQDALAPADAAAFELLKEQLEEVLDTLTEREENVLRLRFGLEDGRTRT 276
Score = 39.7 bits (91), Expect(2) = 2e-09
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 275 RTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRS 308
[217][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
8052 RepID=A6LRQ7_CLOB8
Length = 376
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D EA E +K+ L V+D+L PRE++VLR RFG+DDGR
Sbjct: 275 IGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRA 334
Query: 177 KS 172
++
Sbjct: 335 RT 336
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 335 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 368
[218][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
Eklund 17B RepID=B2TMC7_CLOBB
Length = 374
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D EA E +K+ L V+D+L PRE++VLR RFG+DDGR
Sbjct: 273 IGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRA 332
Query: 177 KS 172
++
Sbjct: 333 RT 334
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 333 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 366
[219][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
RepID=B2V2K8_CLOBA
Length = 374
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D EA E +K+ L V+D+L PRE++VLR RFG+DDGR
Sbjct: 273 IGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRA 332
Query: 177 KS 172
++
Sbjct: 333 RT 334
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 333 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 366
[220][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ L V +L + +S +G E + + I D +A E
Sbjct: 241 EEIAKEMDLP-EEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFSL 299
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ L +V+D+L PRE++VLR RFG+DDGR ++
Sbjct: 300 LKEQLIEVLDTLTPREQKVLRLRFGLDDGRART 332
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 331 RTLEEVGKKFDVTRERIRQIEAKALRKLRHPSRS 364
[221][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
Length = 372
Score = 45.8 bits (107), Expect(2) = 2e-09
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K L +V+D+L RE+ VLR RFG+DDG
Sbjct: 271 IGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNP 330
Query: 177 KS 172
++
Sbjct: 331 RT 332
Score = 39.3 bits (90), Expect(2) = 2e-09
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G + GV+RERIRQ E+ A RKL+ R++
Sbjct: 331 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSN 365
[222][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GBZ7_9FIRM
Length = 372
Score = 45.8 bits (107), Expect(2) = 2e-09
Identities = 26/93 (27%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
+E+A +S V +L + +S +G + + + I D + + E +
Sbjct: 241 DEIAHVMNIS-EERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDVQAPAEAAAFEL 299
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ L+ V+++L PREK+VL RFG++DGR ++
Sbjct: 300 LKEQLDDVLETLTPREKKVLTLRFGLEDGRSRT 332
Score = 39.3 bits (90), Expect(2) = 2e-09
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 331 RTLEEVGQVFGVTRERIRQIEAKALRKLRHPMRS 364
[223][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
RepID=B1QWY9_CLOBU
Length = 369
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D EA E +K+ L V+D+L PRE++VLR RFG+DDGR
Sbjct: 268 IGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRA 327
Query: 177 KS 172
++
Sbjct: 328 RT 329
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 328 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 361
[224][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D EA E +K+ L V+D+L PRE++VLR RFG+DDGR
Sbjct: 267 IGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRA 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 360
[225][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D EA E +K+ L V+D+L PRE++VLR RFG+DDGR
Sbjct: 267 IGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRA 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 360
[226][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D EA E +K+ L V+D+L PRE++VLR RFG+DDGR
Sbjct: 267 IGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRA 326
Query: 177 KS 172
++
Sbjct: 327 RT 328
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 327 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 360
[227][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D EA E +K+ L V+D+L PRE++VLR RFG+DDGR
Sbjct: 260 IGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRA 319
Query: 177 KS 172
++
Sbjct: 320 RT 321
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 320 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 353
[228][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
RepID=A5I618_CLOBH
Length = 361
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D EA E +K+ L V+D+L PRE++VLR RFG+DDGR
Sbjct: 260 IGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRA 319
Query: 177 KS 172
++
Sbjct: 320 RT 321
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 320 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 353
[229][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 30/93 (32%), Positives = 51/93 (54%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
+E+A+ G+S V ++ + +S +G E + + I D +A E
Sbjct: 228 DEIAKEIGMS-VDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTL 286
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ L V+D+L PRE++VLR RFG+DDGR ++
Sbjct: 287 LKEQLIDVLDTLTPREEKVLRLRFGLDDGRART 319
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 318 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 351
[230][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 46.6 bits (109), Expect(2) = 2e-09
Identities = 23/79 (29%), Positives = 46/79 (58%)
Frame = -2
Query: 408 VLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNP 229
V+ ++ + +S +G + + + I D EA+ EE +++ L+ ++++L
Sbjct: 240 VIEIMKVAQEPVSLETPIGEEDDSHLGDFITDEEAESPEESASFVLLREHLDGILNTLTE 299
Query: 228 REKQVLRWRFGMDDGRMKS 172
RE++VLR RFG+DDGR ++
Sbjct: 300 REEKVLRLRFGLDDGRPRT 318
Score = 38.5 bits (88), Expect(2) = 2e-09
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ A RKL+ R+
Sbjct: 317 RTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRS 350
[231][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
RepID=A5N6R2_CLOK5
Length = 354
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D EA E +K+ L V+D+L PRE++VLR RFG+DDGR
Sbjct: 253 IGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRA 312
Query: 177 KS 172
++
Sbjct: 313 RT 314
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 313 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 346
[232][TOP]
>UniRef100_C4LJ13 RNA polymerase sigma factor n=1 Tax=Corynebacterium kroppenstedtii
DSM 44385 RepID=C4LJ13_CORK4
Length = 326
Score = 51.6 bits (122), Expect(2) = 2e-09
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +G+ + L LL R +S +G+ E + I D EA EE ++
Sbjct: 196 EELAEESGIDESKIDL-LLKQSRDPVSLDMPVGTDEEAPLGDFIEDSEATDAEEAVVASL 254
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDG 184
D+ V+ +L RE+ V+R RFG+DDG
Sbjct: 255 RHSDIRTVLATLEKREQDVIRLRFGLDDG 283
Score = 33.5 bits (75), Expect(2) = 2e-09
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L +IG G+SRER+RQ E KL+K +R
Sbjct: 286 RTLDQIGREFGLSRERVRQIEREVMAKLRKGER 318
[233][TOP]
>UniRef100_UPI0001AF41E8 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium kansasii
ATCC 12478 RepID=UPI0001AF41E8
Length = 319
Score = 52.4 bits (124), Expect(2) = 2e-09
Identities = 32/93 (34%), Positives = 51/93 (54%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +G+ + LL R +S +GS E + I D EA E +I +
Sbjct: 188 EELAEESGIP-VDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAEL 246
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ D+ V+ +L+ RE QV+R RFG+DDG+ ++
Sbjct: 247 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRT 279
Score = 32.7 bits (73), Expect(2) = 2e-09
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L +IG++ G+SRER+RQ E KL+ +R
Sbjct: 278 RTLDQIGKLFGLSRERVRQIERDVMCKLRHGER 310
[234][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
MC2 155 RepID=A0QVZ5_MYCS2
Length = 319
Score = 51.6 bits (122), Expect(2) = 2e-09
Identities = 31/93 (33%), Positives = 52/93 (55%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +G+ + LL R +S +G+ E + I D EA E +I +
Sbjct: 188 EELAEESGIPVEK-INDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISEL 246
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ D+ V+ +L+ RE+QV+R RFG+DDG+ ++
Sbjct: 247 LHTDIRYVLATLDEREQQVIRLRFGLDDGQPRT 279
Score = 33.5 bits (75), Expect(2) = 2e-09
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L +IG++ G+SRER+RQ E KL+ +R
Sbjct: 278 RTLDQIGKLFGLSRERVRQIEREVMAKLRNGER 310
[235][TOP]
>UniRef100_Q59553 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis
RepID=Q59553_MYCSM
Length = 319
Score = 51.6 bits (122), Expect(2) = 2e-09
Identities = 31/93 (33%), Positives = 52/93 (55%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE +G+ + LL R +S +G+ E + I D EA E +I +
Sbjct: 188 EELAEESGIPVEK-INDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISEL 246
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ D+ V+ +L+ RE+QV+R RFG+DDG+ ++
Sbjct: 247 LHTDIRYVLATLDEREQQVIRLRFGLDDGQPRT 279
Score = 33.5 bits (75), Expect(2) = 2e-09
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L +IG++ G+SRER+RQ E KL+ +R
Sbjct: 278 RTLDQIGKLFGLSRERVRQIEREVMAKLRNGER 310
[236][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
delbrueckii subsp. lactis RepID=Q71HU9_LACDL
Length = 167
Score = 45.8 bits (107), Expect(2) = 2e-09
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D +A E+ + +K L +V+D+L RE+ VLR RFG+DDG
Sbjct: 66 IGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNP 125
Query: 177 KS 172
++
Sbjct: 126 RT 127
Score = 39.3 bits (90), Expect(2) = 2e-09
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRNS 72
R L E+G + GV+RERIRQ E+ A RKL+ R++
Sbjct: 126 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSN 160
[237][TOP]
>UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9S0J0_RICCO
Length = 548
Score = 49.3 bits (116), Expect(2) = 3e-09
Identities = 25/76 (32%), Positives = 46/76 (60%)
Frame = -2
Query: 399 LLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREK 220
LL R +S + + + + E+ AD E + E + KQ M+K + +++ LNPRE+
Sbjct: 430 LLYMARMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRER 489
Query: 219 QVLRWRFGMDDGRMKS 172
+++R R+G++DG+ KS
Sbjct: 490 KIIRLRYGIEDGKKKS 505
Score = 35.4 bits (80), Expect(2) = 3e-09
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKK 87
++L EIG + G+S+ER+RQ ES A KLK+
Sbjct: 504 KSLSEIGSVFGLSKERVRQLESRALYKLKQ 533
[238][TOP]
>UniRef100_A8F8P3 RNA polymerase sigma factor n=1 Tax=Thermotoga lettingae TMO
RepID=A8F8P3_THELT
Length = 400
Score = 50.4 bits (119), Expect(2) = 3e-09
Identities = 23/76 (30%), Positives = 44/76 (57%)
Frame = -2
Query: 399 LLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREK 220
+L + +S +G E + +AD +++ ++ M+++LEKV+ +LNPRE
Sbjct: 279 ILQASKETVSLEAPVGEDEDSTVGDFVADENITSPKKEAMRMLMREELEKVLKTLNPREA 338
Query: 219 QVLRWRFGMDDGRMKS 172
VL+ R+G+ DG+ K+
Sbjct: 339 MVLKMRYGLLDGKAKT 354
Score = 34.3 bits (77), Expect(2) = 3e-09
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
+ L E+G+ V+RERIRQ E A RKL+ R+
Sbjct: 353 KTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRS 386
[239][TOP]
>UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V564_9FIRM
Length = 383
Score = 45.8 bits (107), Expect(2) = 3e-09
Identities = 28/93 (30%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ G++ V ++ + +S +G E + + I D A E
Sbjct: 252 EEIAKEMGIT-VARVHEIMKIAQEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFML 310
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++ LE+V+++L REK VLR RFG++DGR ++
Sbjct: 311 LREQLEEVLETLTDREKNVLRLRFGLEDGRSRT 343
Score = 38.9 bits (89), Expect(2) = 3e-09
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ A RKL+ R+
Sbjct: 342 RTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRS 375
[240][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
25644 RepID=C2E8V2_9LACO
Length = 373
Score = 45.4 bits (106), Expect(2) = 3e-09
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D A + + +K+ +E V+D+L RE+ VLR RFG+DDGR
Sbjct: 272 IGEEDDSHLGDFIEDHAATSPADHAAYELLKEQIESVLDTLTDREENVLRLRFGLDDGRT 331
Query: 177 KS 172
++
Sbjct: 332 RT 333
Score = 39.3 bits (90), Expect(2) = 3e-09
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G++ GV+RERIRQ E+ A RKL+ R+
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
[241][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 47.4 bits (111), Expect(2) = 3e-09
Identities = 28/93 (30%), Positives = 52/93 (55%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ ++ V +L + +S +G E + + I D EA+ E+
Sbjct: 232 EEIAKEMNIT-EDKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDHEARAPAEEASFTL 290
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+++ L++V+ +L RE++VLR RFG+DDGR ++
Sbjct: 291 LREQLDEVLKTLTEREQRVLRLRFGLDDGRART 323
Score = 37.4 bits (85), Expect(2) = 3e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ GV+RERIRQ E+ RKL+ R+
Sbjct: 322 RTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRS 355
[242][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
Length = 357
Score = 48.9 bits (115), Expect(2) = 3e-09
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ G+ V ++ + +S +G E + + I D +A E
Sbjct: 226 EELAKEMGMP-EEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTM 284
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ L V+D+L PRE++VLR RFG+DDGR ++
Sbjct: 285 LKEQLMDVLDTLTPREEKVLRLRFGLDDGRART 317
Score = 35.8 bits (81), Expect(2) = 3e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 316 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 349
[243][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PMA8_9THEO
Length = 357
Score = 48.9 bits (115), Expect(2) = 3e-09
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ G+ V ++ + +S +G E + + I D +A E
Sbjct: 226 EELAKEMGMP-EEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTM 284
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ L V+D+L PRE++VLR RFG+DDGR ++
Sbjct: 285 LKEQLMDVLDTLTPREEKVLRLRFGLDDGRART 317
Score = 35.8 bits (81), Expect(2) = 3e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 316 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 349
[244][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
RepID=B0K6Y0_THEPX
Length = 357
Score = 48.9 bits (115), Expect(2) = 3e-09
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A+ G+ V ++ + +S +G E + + I D +A E
Sbjct: 226 EELAKEMGMP-EEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTM 284
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+K+ L V+D+L PRE++VLR RFG+DDGR ++
Sbjct: 285 LKEQLMDVLDTLTPREEKVLRLRFGLDDGRART 317
Score = 35.8 bits (81), Expect(2) = 3e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 316 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 349
[245][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
RepID=A1T7W4_MYCVP
Length = 329
Score = 51.2 bits (121), Expect(2) = 3e-09
Identities = 31/93 (33%), Positives = 51/93 (54%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+A +G+ + LL R +S +GS E + I D EA E +I +
Sbjct: 198 EELAAESGIPVEKIT-DLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISEL 256
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
+ D+ V+ +L+ RE+QV+R RFG+DDG+ ++
Sbjct: 257 LHTDIRYVLATLDEREQQVIRLRFGLDDGQPRT 289
Score = 33.5 bits (75), Expect(2) = 3e-09
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKR 78
R L +IG++ G+SRER+RQ E KL+ +R
Sbjct: 288 RTLDQIGKLFGLSRERVRQIEREVMAKLRNGER 320
[246][TOP]
>UniRef100_C4DDY0 RNA polymerase sigma factor n=1 Tax=Stackebrandtia nassauensis DSM
44728 RepID=C4DDY0_9ACTO
Length = 323
Score = 47.8 bits (112), Expect(2) = 3e-09
Identities = 32/93 (34%), Positives = 48/93 (51%)
Frame = -2
Query: 450 EEVAEANGLS*RGLVLYLLLPKRSQISGTEDLGSPELLNPSEVIADPEAKQTEEQLIKQF 271
EE+AE GL VL LL R IS + + S+++A P E
Sbjct: 192 EEIAERMGLE-PYRVLELLSYDRDPISLDQPVSDDRQTPLSDLVARPVDPAAEPNPANAQ 250
Query: 270 MKKDLEKVMDSLNPREKQVLRWRFGMDDGRMKS 172
++++LE+ + L RE+ VLR RFG+DDGR ++
Sbjct: 251 LRQELERALTDLPARERAVLRARFGIDDGRQRT 283
Score = 37.0 bits (84), Expect(2) = 3e-09
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKK 87
R L E+GE LG+SRER+RQ E + KL++
Sbjct: 282 RTLEEVGEELGLSRERVRQLEKLSLNKLRE 311
[247][TOP]
>UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM
Length = 432
Score = 45.4 bits (106), Expect(2) = 4e-09
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA + + +++ LE V+D+L RE+ VLR RFG++DGR
Sbjct: 327 IGEEDDSHLGDFIEDNEAVSPADSAAYEMLREQLESVLDTLTDREENVLRLRFGLEDGRT 386
Query: 177 KS 172
++
Sbjct: 387 RT 388
Score = 38.9 bits (89), Expect(2) = 4e-09
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G + GV+RERIRQ E+ A RKL+ R+
Sbjct: 387 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRS 420
[248][TOP]
>UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC
Length = 432
Score = 45.4 bits (106), Expect(2) = 4e-09
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G + + + I D EA + + +++ LE V+D+L RE+ VLR RFG++DGR
Sbjct: 327 IGEEDDSHLGDFIEDNEAVSPADSAAYEMLREQLESVLDTLTDREENVLRLRFGLEDGRT 386
Query: 177 KS 172
++
Sbjct: 387 RT 388
Score = 38.9 bits (89), Expect(2) = 4e-09
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G + GV+RERIRQ E+ A RKL+ R+
Sbjct: 387 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRS 420
[249][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 48.5 bits (114), Expect(2) = 4e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D +A E +K+ L +V+DSLN REK+VL+ RFG++DGR
Sbjct: 316 IGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRA 375
Query: 177 KS 172
++
Sbjct: 376 RT 377
Score = 35.8 bits (81), Expect(2) = 4e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 376 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 409
[250][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 48.5 bits (114), Expect(2) = 4e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = -2
Query: 357 LGSPELLNPSEVIADPEAKQTEEQLIKQFMKKDLEKVMDSLNPREKQVLRWRFGMDDGRM 178
+G E + + I D +A E +K+ L +V+DSLN REK+VL+ RFG++DGR
Sbjct: 310 IGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRA 369
Query: 177 KS 172
++
Sbjct: 370 RT 371
Score = 35.8 bits (81), Expect(2) = 4e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 176 RALPEIGEMLGVSRERIRQTESCAFRKLKKKKRN 75
R L E+G+ V+RERIRQ E+ A RKL+ R+
Sbjct: 370 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 403