[UP]
[1][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 272 bits (695), Expect = 1e-71
Identities = 137/159 (86%), Positives = 146/159 (91%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
EGVSY R P++KIRE+KDD A+FELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSV
Sbjct: 2 EGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIAHRLGLIPLTSERAMAMRFSRDCDA DGDGQCEF SVEFHLR KCMTDETLDVT
Sbjct: 62 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
SKDL SSDHTVVPVDFS + DSA KGIIIVKLRRGQ
Sbjct: 122 SKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQ 160
[2][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 271 bits (692), Expect = 2e-71
Identities = 136/159 (85%), Positives = 146/159 (91%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
EGVSY R P++KIRE+KDD A+FELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSV
Sbjct: 2 EGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIAHRLGLIPLTSERAM+MRFSRDCDA DGDGQCEF SVEFHLR KCMTDETLDVT
Sbjct: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
SKDL SSDHTVVPVDFS + DSA KGIIIVKLRRGQ
Sbjct: 122 SKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQ 160
[3][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 268 bits (684), Expect = 2e-70
Identities = 132/159 (83%), Positives = 145/159 (91%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
EG SY R PR+KIRELKDD +FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSV
Sbjct: 2 EGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIAHRLGLIPLTSERAM+MRFSRDCDA DGDGQC++ SVEFHLR KC+TD+TLDVT
Sbjct: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
SKDLYSSDHTVVPVDFS + DS+ +GIIIVKLRRGQ
Sbjct: 122 SKDLYSSDHTVVPVDFSDSSGYDSSEQRGIIIVKLRRGQ 160
[4][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 262 bits (670), Expect = 8e-69
Identities = 133/159 (83%), Positives = 143/159 (89%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
EG SYARMPRVKIRELKDD +FELRDTDAS+ANALRRVMISEVPT+AIDLVEIEVNSSV
Sbjct: 2 EGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIAHRLGLIPLTSERAMAMRFSRDCDA DGDGQCE+ SVEFHLRVKC+TD+TLDV+
Sbjct: 62 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVS 121
Query: 375 SKDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
SKDL SSDHTV PVD +S + +GIIIVKLRRGQ
Sbjct: 122 SKDLISSDHTVTPVDVPGGDASIESDGRGIIIVKLRRGQ 160
[5][TOP]
>UniRef100_Q45NH1 DNA-directed RNA polymerase II third largest subunit (Fragment) n=1
Tax=Medicago sativa RepID=Q45NH1_MEDSA
Length = 184
Score = 257 bits (656), Expect = 3e-67
Identities = 131/155 (84%), Positives = 140/155 (90%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YARMPRVKIRELKDD +FELRDTDAS+ANALRRVMISEVPTIAIDLVEIEVNSSVLNDE
Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60
Query: 207 FIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL 386
FIAHRLGLIPLTSERAMAMRFSRDCDA DGDGQCE+ SVEFHLRVKC+TD+TLDV+SKDL
Sbjct: 61 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDL 120
Query: 387 YSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
SSDHTV PVD +S + +GIIIVKLRRGQ
Sbjct: 121 ISSDHTVTPVDVPGGDASVESDGRGIIIVKLRRGQ 155
[6][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 254 bits (649), Expect = 2e-66
Identities = 129/164 (78%), Positives = 144/164 (87%), Gaps = 5/164 (3%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
E VSY R P++KIRE+KDD +FELR+TDAS+ANALRRVMI+EVPTIAIDLVEIEVNSSV
Sbjct: 2 ESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIAHRLGLIPLTSERAM MRFSRDCDA DGDGQCE+ SVEFHLR KC+TD+TLDVT
Sbjct: 62 LNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFS-PDTSSD----SAVNKGIIIVKLRRGQ 491
SKDLYSSDH V+PVDFS P ++D + +GIIIVKLRRGQ
Sbjct: 122 SKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQ 165
[7][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 253 bits (647), Expect = 4e-66
Identities = 128/160 (80%), Positives = 145/160 (90%), Gaps = 1/160 (0%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
+G +Y R P++KIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AIDLVEIEVNSSV
Sbjct: 2 DGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIAHRLGLIPLTSERAM+MRFSRDCDA DGDGQCEF SVEF L KC+TD+TLDVT
Sbjct: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQ 491
S+DLYS+D TV PVDF+ D+S SDS+ +KGIIIVKLRRGQ
Sbjct: 122 SRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQ 161
[8][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 250 bits (639), Expect = 3e-65
Identities = 127/160 (79%), Positives = 144/160 (90%), Gaps = 1/160 (0%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
+G +Y R P++KIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AIDLVEIEVNSSV
Sbjct: 2 DGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIAHRLGLI LTSERAM+MRFSRDCDA DGDGQCEF SVEF L KC+TD+TLDVT
Sbjct: 62 LNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQ 491
S+DLYS+D TV PVDF+ D+S SDS+ +KGIIIVKLRRGQ
Sbjct: 122 SRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQ 161
[9][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
RepID=A8MR04_ARATH
Length = 235
Score = 227 bits (578), Expect = 4e-58
Identities = 117/160 (73%), Positives = 137/160 (85%), Gaps = 1/160 (0%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
+GV+Y R P VKIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSSV
Sbjct: 2 DGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIA RL LIPLTSERAM+MRF +DC+ +GD CEF SVEF L KC+TD+TLDVT
Sbjct: 62 LNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQ 491
S+DLYS+D TV PVDF+ ++S SDS+ +KGIII KLRRGQ
Sbjct: 122 SRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQ 161
[10][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 227 bits (578), Expect = 4e-58
Identities = 117/160 (73%), Positives = 137/160 (85%), Gaps = 1/160 (0%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
+GV+Y R P VKIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSSV
Sbjct: 2 DGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIA RL LIPLTSERAM+MRF +DC+ +GD CEF SVEF L KC+TD+TLDVT
Sbjct: 62 LNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQ 491
S+DLYS+D TV PVDF+ ++S SDS+ +KGIII KLRRGQ
Sbjct: 122 SRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQ 161
[11][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 219 bits (558), Expect = 7e-56
Identities = 118/170 (69%), Positives = 134/170 (78%), Gaps = 12/170 (7%)
Frame = +3
Query: 18 GVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 197
GVSY R PRV+IRELKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66
Query: 198 NDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCM-TDETLDVT 374
NDEFIAHRLGLIPLTS AMAMRFSRDCDA DGDG CE+ SVEFHL + +D+TL+VT
Sbjct: 67 NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 126
Query: 375 SKDLYSSDHTVVPVD-----------FSPDTSSDSAVNKGIIIVKLRRGQ 491
S DL S+D V PVD P ++ +A +GI+IVKLRRGQ
Sbjct: 127 SNDLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQ 176
[12][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 219 bits (558), Expect = 7e-56
Identities = 109/163 (66%), Positives = 134/163 (82%), Gaps = 4/163 (2%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
+ VSY R P V+IR++KDD+ +FELRDTDASIANALRR+MI+EVPT+AIDLVEIE NSSV
Sbjct: 2 DNVSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEF+AHRLGLIP+ S+RAM MR SRDCDA DGDG+CE+ S+EFHL VKC D+TLDVT
Sbjct: 62 LNDEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTSS----DSAVNKGIIIVKLRRGQ 491
S DL SSD +++PVD + + +S +GI+IVKLR+GQ
Sbjct: 122 SLDLVSSDPSIIPVDAAGRAADMGGFESNDTRGILIVKLRKGQ 164
[13][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 216 bits (551), Expect = 5e-55
Identities = 118/170 (69%), Positives = 131/170 (77%), Gaps = 12/170 (7%)
Frame = +3
Query: 18 GVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 197
G SY R PRV+IRELKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 6 GTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 198 NDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCM-TDETLDVT 374
NDEFIAHRLGLIPLTS AM MRFSRDCDA DGDG CE+ SVEFHL V +D+TL+VT
Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVT 125
Query: 375 SKDLYSSDHTVVPVD-----------FSPDTSSDSAVNKGIIIVKLRRGQ 491
S DL S D V PVD P ++ S N+GI+IVKLRRGQ
Sbjct: 126 SNDLRSMDPKVCPVDQARAYQHALGGTDPFGANASNENRGILIVKLRRGQ 175
[14][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 215 bits (548), Expect = 1e-54
Identities = 116/170 (68%), Positives = 131/170 (77%), Gaps = 12/170 (7%)
Frame = +3
Query: 18 GVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 197
G SY R PRV+IR+LKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 6 GASYQRFPRVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 198 NDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCM-TDETLDVT 374
NDEFIAHRLGLIPLTS AM MRFSRDCDA DGDG CE+ SVEFHL + +D+TL+VT
Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 125
Query: 375 SKDLYSSDHTVVPVD-----------FSPDTSSDSAVNKGIIIVKLRRGQ 491
S DL S D V PVD P ++ S N+GI+IVKLRRGQ
Sbjct: 126 SNDLRSMDPKVCPVDQARAYQQALGGTDPFGANTSNENRGILIVKLRRGQ 175
[15][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 153 bits (387), Expect = 5e-36
Identities = 87/161 (54%), Positives = 106/161 (65%), Gaps = 3/161 (1%)
Frame = +3
Query: 18 GVSYARMPRVKIRELKD--DMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
GVSY R+P V I E ++ RF+L +TD S+AN+LRR M+ EVPT+A DLVEIE+NSS
Sbjct: 17 GVSYHRLPTVSIMESMSSRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSS 76
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
VL DEFIAHRLGLIPLTS+RAM M F +CD+ GD C+ +VEF L VK D DV
Sbjct: 77 VLTDEFIAHRLGLIPLTSDRAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIKDV 136
Query: 372 TSKDLYSSDHTVVPVDFSPDTSSD-SAVNKGIIIVKLRRGQ 491
T +DL SS+ VVPV+ D I I KL +GQ
Sbjct: 137 TQRDLKSSNDAVVPVEIDVDKQGVLEECKMDICIAKLYKGQ 177
[16][TOP]
>UniRef100_UPI0000E4A699 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E4A699
Length = 275
Score = 151 bits (381), Expect = 2e-35
Identities = 81/156 (51%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P +++ EL DD +F + DTD S+AN++RR +++EVPTIAID VEI+ NSSVL+DE
Sbjct: 3 YANQPTIQLTELTDDNVKFIIEDTDLSVANSIRRTILAEVPTIAIDWVEIQANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FI+HR+GLIPLTS+ + + F+RDC + C SVE L VKC D+T VTS+D
Sbjct: 63 FISHRVGLIPLTSDEVVDKLNFNRDCGCEEFCSDC---SVELSLDVKCTDDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
L SS+ VVPV SSD I+IVKLR+GQ
Sbjct: 120 LLSSNQKVVPVPSRNQESSDYGEVDDILIVKLRKGQ 155
[17][TOP]
>UniRef100_C1BV58 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Lepeophtheirus
salmonis RepID=C1BV58_9MAXI
Length = 279
Score = 149 bits (375), Expect = 1e-34
Identities = 83/159 (52%), Positives = 110/159 (69%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P + I EL +D+ +F L DTD S+ANA+RRVMI+E P +AID V++E NS+VL+DE
Sbjct: 3 YANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLG+IPLTS+ A+ +M++SRDC +D +C +VEF L VKC + T +VTS D
Sbjct: 63 FIAHRLGMIPLTSDDAVDSMQYSRDCTCTDFCREC---AVEFTLDVKCHEETTRNVTSAD 119
Query: 384 LYSSDHTVVPV---DFSPDTSSDSAVNKGIIIVKLRRGQ 491
L SSD V+PV + D N I+IVKLR+GQ
Sbjct: 120 LKSSDPKVIPVTSRNQEEDGHEYGNENDDILIVKLRKGQ 158
[18][TOP]
>UniRef100_B7QL55 RNA polymerase II, subunit POLR2C/RPB3, putative n=1 Tax=Ixodes
scapularis RepID=B7QL55_IXOSC
Length = 274
Score = 146 bits (369), Expect = 6e-34
Identities = 82/157 (52%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I EL D+ +F + DTD S+AN+LRRV I+EV T+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + M++SRDC +D +C SVEF + VKC+ ++T VT+ D
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTEC---SVEFTIDVKCLDEQTRHVTTAD 119
Query: 384 LYSSDHTVVPV-DFSPDTSSDSAVNKGIIIVKLRRGQ 491
L SSD VVPV D +++ I+IVKLR+GQ
Sbjct: 120 LKSSDPRVVPVTSRHKDDTNEYGETDDILIVKLRKGQ 156
[19][TOP]
>UniRef100_UPI00019253CC PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI00019253CC
Length = 273
Score = 145 bits (367), Expect = 1e-33
Identities = 85/157 (54%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA PRVKI E DD +F L +TD S+AN+LRR+ I+EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 207 FIAHRLGLIPLTS-ERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIPLTS E+ M +SRDC S+ +C SV+F L VKC + T VTS+D
Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSEFCDEC---SVKFTLDVKCTGETTRHVTSRD 119
Query: 384 LYSSDHTVVPVDFS-PDTSSDSAVNKGIIIVKLRRGQ 491
L S D V+PV D + I+IVKLR+GQ
Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDEIVIVKLRKGQ 156
[20][TOP]
>UniRef100_UPI0001925380 PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI0001925380
Length = 289
Score = 145 bits (367), Expect = 1e-33
Identities = 85/157 (54%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA PRVKI E DD +F L +TD S+AN+LRR+ I+EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 207 FIAHRLGLIPLTS-ERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIPLTS E+ M +SRDC S+ +C SV+F L VKC + T VTS+D
Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSEFCDEC---SVKFTLDVKCTGETTRHVTSRD 119
Query: 384 LYSSDHTVVPVDFS-PDTSSDSAVNKGIIIVKLRRGQ 491
L S D V+PV D + I+IVKLR+GQ
Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDEIVIVKLRKGQ 156
[21][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 145 bits (365), Expect = 2e-33
Identities = 86/153 (56%), Positives = 103/153 (67%)
Frame = +3
Query: 33 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 212
R P ++I E+K+D F L +TD S+ANALRRVMI+EVPT+ IDLVE E N+SVL DEFI
Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69
Query: 213 AHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYS 392
AHRLGLIPL S+ ++RDC SD QC SVE L VKC + DVTS DL S
Sbjct: 70 AHRLGLIPLVSDNIDKFCYTRDCSCSDRCDQC---SVELRLNVKCTENRPRDVTSSDLLS 126
Query: 393 SDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ V+PV S TSS+S + I IVKLRRGQ
Sbjct: 127 QNSAVIPVS-SQVTSSNS--EQEIPIVKLRRGQ 156
[22][TOP]
>UniRef100_Q7ZV11 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Danio
rerio RepID=Q7ZV11_DANRE
Length = 275
Score = 143 bits (360), Expect = 7e-33
Identities = 80/158 (50%), Positives = 110/158 (69%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P VKI EL D+ +F + +TD ++AN++RRV +SEVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPLTS+ + M++SRDC D +C SVE L V+C D+T VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPEC---SVELTLDVRCTEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQ 491
L S++ V+PV S D + V + I++VKLR+GQ
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQ 157
[23][TOP]
>UniRef100_Q76L19 Homologue of DNA-directed RNA polymerase II subunit n=1
Tax=Antheraea pernyi RepID=Q76L19_ANTPE
Length = 275
Score = 143 bits (360), Expect = 7e-33
Identities = 78/158 (49%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I EL DD +F + DT+ S+AN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + +R+SRDC +D +C SVEF L VKC D+T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCADFCSEC---SVEFTLDVKCTDDQTRHVTTAD 119
Query: 384 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQ 491
L SSD VVPV + +D I+I+KLR+GQ
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGETDEILIIKLRKGQ 157
[24][TOP]
>UniRef100_C3Z918 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z918_BRAFL
Length = 275
Score = 142 bits (359), Expect = 9e-33
Identities = 78/158 (49%), Positives = 109/158 (68%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P+V + EL D+ +F + DTD S+ANA+RR+ I+EVPT+AID V++E NSSVL+DE
Sbjct: 3 YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIPLTS+ + M++SRDC ++ C ++E L VKC D+T VT++D
Sbjct: 63 FIAHRVGLIPLTSDDIVDRMQYSRDCTCAEFCADC---AIELTLDVKCTDDQTRHVTTRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L SS+ VVPV + D ++ I+IVKLR+GQ
Sbjct: 120 LISSNPRVVPVTSRRAEDETAGYGEADDILIVKLRKGQ 157
[25][TOP]
>UniRef100_UPI000001AB34 UPI000001AB34 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI000001AB34
Length = 275
Score = 142 bits (358), Expect = 1e-32
Identities = 78/158 (49%), Positives = 110/158 (69%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P VKI EL D+ +F + +TD ++AN++RRV +SEVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPLTS+ + +++SRDC D +C SVE L V+C D+T VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTCDDFCSEC---SVELTLDVRCTEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQ 491
L S++ V+PV S D + V + I++VKLR+GQ
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQ 157
[26][TOP]
>UniRef100_UPI00003AA556 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
RepID=UPI00003AA556
Length = 275
Score = 141 bits (356), Expect = 2e-32
Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + M++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQ 491
L S++ V+PV S D + V + I+IVKLR+GQ
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQ 157
[27][TOP]
>UniRef100_Q4SK90 Chromosome 13 SCAF14566, whole genome shotgun sequence. (Fragment)
n=1 Tax=Tetraodon nigroviridis RepID=Q4SK90_TETNG
Length = 275
Score = 141 bits (356), Expect = 2e-32
Identities = 78/158 (49%), Positives = 110/158 (69%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P VKI EL D+ +F + +TD ++AN++RRV +SEVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPLTS+ + +++SRDC D +C SVE L V+C D+T VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTCDDFCPEC---SVELTLDVRCTEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQ 491
L S++ V+PV S D + V + I++VKLR+GQ
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQ 157
[28][TOP]
>UniRef100_B5FZ64 Putative DNA directed RNA polymerase II polypeptide C n=1
Tax=Taeniopygia guttata RepID=B5FZ64_TAEGU
Length = 275
Score = 141 bits (356), Expect = 2e-32
Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + M++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQ 491
L S++ V+PV S D + V + I+IVKLR+GQ
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQ 157
[29][TOP]
>UniRef100_Q6P7Y7 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Xenopus
(Silurana) tropicalis RepID=Q6P7Y7_XENTR
Length = 275
Score = 141 bits (355), Expect = 3e-32
Identities = 81/158 (51%), Positives = 111/158 (70%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIPLTS+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQ 491
L S++ V+PV S D + V + I+IVKLR+GQ
Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQ 157
[30][TOP]
>UniRef100_Q6IRR3 MGC81245 protein n=1 Tax=Xenopus laevis RepID=Q6IRR3_XENLA
Length = 275
Score = 140 bits (354), Expect = 3e-32
Identities = 80/158 (50%), Positives = 111/158 (70%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V++ EL D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIPLTS+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPEC---SVEFTLDVRCTEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQ 491
L S++ V+PV S D + V + I+IVKLR+GQ
Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQ 157
[31][TOP]
>UniRef100_C1BL52 DNA-directed RNA polymerase II 33 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BL52_OSMMO
Length = 275
Score = 140 bits (354), Expect = 3e-32
Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P VKI EL D+ +F + +TD ++AN++RRV +SEV TIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIPLTS+ + M++SRDC D +C SVE L V+C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPEC---SVELTLDVRCTEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQ 491
L S++ V+PV S D + V + II+VKLR+GQ
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDIILVKLRKGQ 157
[32][TOP]
>UniRef100_UPI0000D5785C PREDICTED: similar to DNA-directed RNA polymerase II subunit n=1
Tax=Tribolium castaneum RepID=UPI0000D5785C
Length = 274
Score = 140 bits (353), Expect = 4e-32
Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I +L DD +F + DTD S+AN++RRV+I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + +++ RDC +D +C SVEF L VKC D T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVQRLQYPRDCICTDFCHEC---SVEFTLDVKCTDDHTRHVTTAD 119
Query: 384 LYSSDHTVVPV--DFSPDTSSDSAVNKGIIIVKLRRGQ 491
L SSD V+P D SS+ I+I+KLR+GQ
Sbjct: 120 LKSSDPRVIPATSKHRDDESSEYGDTDEILIIKLRKGQ 157
[33][TOP]
>UniRef100_UPI00005EAD58 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C, 33kDa n=1 Tax=Monodelphis domestica
RepID=UPI00005EAD58
Length = 275
Score = 140 bits (353), Expect = 4e-32
Identities = 79/158 (50%), Positives = 107/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + SD I+IVKLR+GQ
Sbjct: 120 LISNTPRVIPVTSRSRDNDPSDYVEQDDILIVKLRKGQ 157
[34][TOP]
>UniRef100_C4WTK3 ACYPI001769 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WTK3_ACYPI
Length = 273
Score = 139 bits (351), Expect = 7e-32
Identities = 79/161 (49%), Positives = 108/161 (67%), Gaps = 6/161 (3%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I EL D +F++ DTD S+AN+LRRV I+E PT+AID V+++ NS+VL+DE
Sbjct: 3 YANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIA R+GLIPLTS+ + +++SRDC SD C SVEF+L VKC + T VT+ D
Sbjct: 63 FIASRIGLIPLTSDEIVDRLQYSRDCTCSDFCHDC---SVEFNLHVKCSEEMTRHVTTAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAVNK-----GIIIVKLRRGQ 491
L S++ VVPV + DS +N+ I+I+KLR+GQ
Sbjct: 120 LVSNNPRVVPV---TSRNQDSDINEYGEKDDILIIKLRKGQ 157
[35][TOP]
>UniRef100_Q3T0Q3 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Bos taurus
RepID=RPB3_BOVIN
Length = 275
Score = 139 bits (351), Expect = 7e-32
Identities = 78/158 (49%), Positives = 107/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I+IVKLR+GQ
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[36][TOP]
>UniRef100_A8PAX3 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Brugia malayi RepID=A8PAX3_BRUMA
Length = 275
Score = 139 bits (350), Expect = 1e-31
Identities = 78/158 (49%), Positives = 107/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I L D++ RF L DTD S+AN+LRR+ ++EVPT+AID V+IE NSSVL+DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + M+FSRDC ++ C+F +VE LRV+C + VT+ D
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTE---FCQFCAVEMRLRVRCDDEGIRAVTTAD 119
Query: 384 LYSSDHTVVPV--DFSPDTSSDSAVNKGIIIVKLRRGQ 491
L +S+ V P + +++ + I+IVKLR+GQ
Sbjct: 120 LETSNPDVAPACGVHIRNRNAEENASDDILIVKLRKGQ 157
[37][TOP]
>UniRef100_UPI000186DA34 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186DA34
Length = 275
Score = 139 bits (349), Expect = 1e-31
Identities = 77/158 (48%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I +L D+ +F++ DT+ S+AN++RRV I+E PT+AID V++E NS+VL DE
Sbjct: 3 YANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FI+HR+GLIPLTS+ + ++++RDC D +C SVEF L VKC D T VT+ D
Sbjct: 63 FISHRVGLIPLTSDEVVDRIQYTRDCTCLDFCPEC---SVEFTLDVKCTDDHTRHVTTAD 119
Query: 384 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQ 491
L SSD V+PV D +S+ I+IVKLR+GQ
Sbjct: 120 LKSSDPRVLPVTSRHREDDTSEYGEADEILIVKLRKGQ 157
[38][TOP]
>UniRef100_C1BXW0 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Esox lucius
RepID=C1BXW0_ESOLU
Length = 275
Score = 139 bits (349), Expect = 1e-31
Identities = 77/158 (48%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P VKI EL D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIPLTS+ + M++SRDC D +C SVE L V+C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPEC---SVELTLDVRCTEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDFS--PDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I++VKLR+GQ
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQ 157
[39][TOP]
>UniRef100_B5XBM8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5XBM8_SALSA
Length = 275
Score = 139 bits (349), Expect = 1e-31
Identities = 77/158 (48%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P VKI EL D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIPLTS+ + M++SRDC D +C SVE L V+C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPEC---SVELTLDVRCTEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDFS--PDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I++VKLR+GQ
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQ 157
[40][TOP]
>UniRef100_UPI00006A469F PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 n=1 Tax=Ciona intestinalis
RepID=UPI00006A469F
Length = 277
Score = 138 bits (348), Expect = 2e-31
Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
+A P V I EL +D +F + DTD S AN++RRV I+EVPT+AID ++IE NSSVLNDE
Sbjct: 3 FANQPTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F++HR+GLIPLTS+ + +++SRDC D C+ SVEF+L VKC + T VT++D
Sbjct: 63 FLSHRIGLIPLTSDDVVDKIQYSRDCMCDD---FCQDCSVEFYLDVKCTGEGTRQVTTRD 119
Query: 384 LYSSDHTVVPVDFSP--DTSSDSAVNKGIIIVKLRRGQ 491
L S + VVP+ D+S I+I KLR+GQ
Sbjct: 120 LISMNPKVVPITSRSRGDSSKSFGEQDDILIAKLRKGQ 157
[41][TOP]
>UniRef100_Q1HQ43 DNA-directed RNA polymerase II polypeptide n=1 Tax=Bombyx mori
RepID=Q1HQ43_BOMMO
Length = 275
Score = 138 bits (348), Expect = 2e-31
Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I EL D+ +F + DT+ S+AN++RRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + +R+SRDC D +C SVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSEC---SVEFTLDVKCTDEQTRHVTTAD 119
Query: 384 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQ 491
L SSD VVPV + +D I+I+KLR+GQ
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQ 157
[42][TOP]
>UniRef100_A7SI64 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SI64_NEMVE
Length = 274
Score = 138 bits (348), Expect = 2e-31
Identities = 81/158 (51%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P VKI EL D+ +F + T S+AN LRR+ I+E PTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGL+PLTS+ + M FSRDC D C+ S+EF L VKC D T VT++D
Sbjct: 63 FIAHRLGLVPLTSDEVVDRMTFSRDCTC---DEFCDDCSIEFTLDVKCTDDSTRHVTTQD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S++ VPV D S + I+IVKLR+GQ
Sbjct: 120 LISTNPRCVPVTSRNREDDSREYMEQDDILIVKLRKGQ 157
[43][TOP]
>UniRef100_UPI0000DC0B4D polymerase II polypeptide C n=1 Tax=Rattus norvegicus
RepID=UPI0000DC0B4D
Length = 330
Score = 138 bits (347), Expect = 2e-31
Identities = 77/158 (48%), Positives = 107/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I+IVKLR+GQ
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[44][TOP]
>UniRef100_UPI00016D3816 polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Mus
musculus RepID=UPI00016D3816
Length = 302
Score = 138 bits (347), Expect = 2e-31
Identities = 77/158 (48%), Positives = 107/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I+IVKLR+GQ
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[45][TOP]
>UniRef100_Q9DB22 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q9DB22_MOUSE
Length = 275
Score = 138 bits (347), Expect = 2e-31
Identities = 77/158 (48%), Positives = 107/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I+IVKLR+GQ
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[46][TOP]
>UniRef100_Q99M46 Polymerase (RNA) II (DNA directed) polypeptide C n=2 Tax=Murinae
RepID=Q99M46_MOUSE
Length = 275
Score = 138 bits (347), Expect = 2e-31
Identities = 77/158 (48%), Positives = 107/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I+IVKLR+GQ
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[47][TOP]
>UniRef100_Q3UUX3 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q3UUX3_MOUSE
Length = 332
Score = 138 bits (347), Expect = 2e-31
Identities = 77/158 (48%), Positives = 107/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I+IVKLR+GQ
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[48][TOP]
>UniRef100_O97183 RNA polymerase II 33kD subunit, isoform A n=1 Tax=Drosophila
melanogaster RepID=O97183_DROME
Length = 275
Score = 138 bits (347), Expect = 2e-31
Identities = 77/159 (48%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + ++++RDC D +C SVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPEC---SVEFTLDVKCSEEQTRHVTTAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQ 491
L SS+ V+PV D+ N I+I+KLR+GQ
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQ 158
[49][TOP]
>UniRef100_B4Q573 GD23930 n=1 Tax=Drosophila simulans RepID=B4Q573_DROSI
Length = 275
Score = 138 bits (347), Expect = 2e-31
Identities = 77/159 (48%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + ++++RDC D +C SVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPEC---SVEFTLDVKCSEEQTRHVTTAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQ 491
L SS+ V+PV D+ N I+I+KLR+GQ
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQ 158
[50][TOP]
>UniRef100_B4P3R0 GE18688 n=1 Tax=Drosophila yakuba RepID=B4P3R0_DROYA
Length = 275
Score = 138 bits (347), Expect = 2e-31
Identities = 77/159 (48%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + ++++RDC D +C SVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPEC---SVEFTLDVKCSEEQTRHVTTAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQ 491
L SS+ V+PV D+ N I+I+KLR+GQ
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQ 158
[51][TOP]
>UniRef100_B4HXA7 GM15286 n=1 Tax=Drosophila sechellia RepID=B4HXA7_DROSE
Length = 275
Score = 138 bits (347), Expect = 2e-31
Identities = 77/159 (48%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + ++++RDC D +C SVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPEC---SVEFTLDVKCSEEQTRHVTTAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQ 491
L SS+ V+PV D+ N I+I+KLR+GQ
Sbjct: 120 LKSSNAKVLPVTSRHQGEEDNEYGESNDEILIIKLRKGQ 158
[52][TOP]
>UniRef100_UPI0000D9F160 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 1 n=1 Tax=Macaca mulatta RepID=UPI0000D9F160
Length = 257
Score = 137 bits (345), Expect = 4e-31
Identities = 77/158 (48%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPL S+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I+IVKLR+GQ
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[53][TOP]
>UniRef100_B5X5T8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5X5T8_SALSA
Length = 275
Score = 137 bits (345), Expect = 4e-31
Identities = 76/158 (48%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P VKI EL D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIPLTS+ + M++SRDC D +C SVE L +C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPEC---SVELTLDARCTEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDFS--PDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I++VKLR+GQ
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQ 157
[54][TOP]
>UniRef100_Q7Q2H6 AGAP010321-PA n=1 Tax=Anopheles gambiae RepID=Q7Q2H6_ANOGA
Length = 273
Score = 137 bits (345), Expect = 4e-31
Identities = 77/159 (48%), Positives = 104/159 (65%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I EL D+ +F + DT+ S+AN+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + M++SRDC D +C SVEF L VKC + T VT+ D
Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLDFCNEC---SVEFTLDVKCNEEHTRHVTTAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAVNKG---IIIVKLRRGQ 491
L SSD V+PV D+ +G I+I+KLR+GQ
Sbjct: 120 LKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQ 158
[55][TOP]
>UniRef100_B4MVQ9 GK15011 n=1 Tax=Drosophila willistoni RepID=B4MVQ9_DROWI
Length = 275
Score = 137 bits (345), Expect = 4e-31
Identities = 77/159 (48%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + ++++RDC D +C SVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPEC---SVEFTLDVKCNEEQTRHVTTAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQ 491
L SS+ V+PV D+ N I+I+KLR+GQ
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQ 158
[56][TOP]
>UniRef100_B7Z6D1 cDNA FLJ57430, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z6D1_HUMAN
Length = 424
Score = 137 bits (345), Expect = 4e-31
Identities = 77/158 (48%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPL S+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I+IVKLR+GQ
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[57][TOP]
>UniRef100_P19387 DNA-directed RNA polymerase II subunit RPB3 n=2 Tax=Homo sapiens
RepID=RPB3_HUMAN
Length = 275
Score = 137 bits (345), Expect = 4e-31
Identities = 77/158 (48%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPL S+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I+IVKLR+GQ
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[58][TOP]
>UniRef100_Q16XU4 DNA-directed RNA polymerase II subunit n=1 Tax=Aedes aegypti
RepID=Q16XU4_AEDAE
Length = 275
Score = 137 bits (344), Expect = 5e-31
Identities = 77/159 (48%), Positives = 103/159 (64%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I EL D+ +F + DTD S+ N+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + M++SRDC D +C SVEF L VKC + T VT+ D
Sbjct: 63 FLAHRVGLIPLISDEVVERMQYSRDCTCLDFCTEC---SVEFTLDVKCNDEHTRHVTTAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAVNKG---IIIVKLRRGQ 491
L SSD V+PV D+ +G I+I+KLR+GQ
Sbjct: 120 LKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQ 158
[59][TOP]
>UniRef100_B4JCX9 GH11119 n=3 Tax=Drosophila RepID=B4JCX9_DROGR
Length = 275
Score = 137 bits (344), Expect = 5e-31
Identities = 76/159 (47%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + ++++RDC D +C SVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPEC---SVEFTLDVKCNEEQTRHVTTAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAVNKG---IIIVKLRRGQ 491
L SS+ V+PV D+ + I+I+KLR+GQ
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESTDEILIIKLRKGQ 158
[60][TOP]
>UniRef100_P97760 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Mus musculus
RepID=RPB3_MOUSE
Length = 275
Score = 137 bits (344), Expect = 5e-31
Identities = 77/158 (48%), Positives = 107/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L S+ V+PV + +D I+IVKLR+GQ
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[61][TOP]
>UniRef100_Q29K78 GA20659 n=2 Tax=pseudoobscura subgroup RepID=Q29K78_DROPS
Length = 275
Score = 136 bits (343), Expect = 6e-31
Identities = 75/159 (47%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPL S+ + ++++RDC D +C SVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPEC---SVEFTLDVKCSEEQTRHVTTAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAVNKG---IIIVKLRRGQ 491
L +S+ V+PV D+ + I+I+KLR+GQ
Sbjct: 120 LKTSNPKVLPVTSRNQGEEDNEYGESSDEILIIKLRKGQ 158
[62][TOP]
>UniRef100_B3RV95 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3RV95_TRIAD
Length = 274
Score = 136 bits (342), Expect = 8e-31
Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA PRV I +L ++ +F L +TD S+AN+LRR+ I+ VPT+AID V+ N+SVL+DE
Sbjct: 3 YASQPRVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLT + + +++SRDC+ + +C SVEF L V+C D+T VT++D
Sbjct: 63 FIAHRLGLIPLTCDEVIDRLQYSRDCNCVEHCPEC---SVEFTLDVRCNDDQTRHVTTRD 119
Query: 384 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQ 491
L SSD VVPV + D + I+I KLRRGQ
Sbjct: 120 LISSDSRVVPVTTRYGEDDTVYGDQEDDILIAKLRRGQ 157
[63][TOP]
>UniRef100_UPI000051A16D PREDICTED: similar to RNA polymerase II 33kD subunit CG7885-PA,
isoform A n=1 Tax=Apis mellifera RepID=UPI000051A16D
Length = 276
Score = 135 bits (340), Expect = 1e-30
Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I +L ++ +F++ DT+ S+AN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+G+IPL S+ + ++++RDC D +C SVEF L VKC D+T VT+ D
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPEC---SVEFTLDVKCTEDQTRHVTTAD 119
Query: 384 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQ 491
SSD V+PV D +S+ I+IVKLR+GQ
Sbjct: 120 FKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQ 157
[64][TOP]
>UniRef100_Q4R533 Brain cDNA, clone: QccE-21516, similar to human polymerase (RNA) II
(DNA directed) polypeptide C, 33kDa(POLR2C), transcript
variant gamma, n=1 Tax=Macaca fascicularis
RepID=Q4R533_MACFA
Length = 251
Score = 135 bits (340), Expect = 1e-30
Identities = 76/158 (48%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPL S+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L + V+PV + +D I+IVKLR+GQ
Sbjct: 120 LIPNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 157
[65][TOP]
>UniRef100_UPI00015B59AE PREDICTED: similar to DNA-directed RNA polymerase II polypeptide
n=1 Tax=Nasonia vitripennis RepID=UPI00015B59AE
Length = 276
Score = 134 bits (337), Expect = 3e-30
Identities = 73/158 (46%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V I EL ++ +F++ DT+ S+AN++RRV I+E PT+AID V+IE NS+VL+DE
Sbjct: 3 YANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+G+IPL S+ + ++++RDC D +C VEF L VKC + T VT+ D
Sbjct: 63 FLAHRIGMIPLISDEVVDRIQYTRDCQCMDFCPEC---CVEFTLDVKCSDETTRHVTTAD 119
Query: 384 LYSSDHTVVPV--DFSPDTSSDSAVNKGIIIVKLRRGQ 491
L SS+ VVPV D +++ I+IVKLR+GQ
Sbjct: 120 LKSSEQRVVPVTSKHRDDDANEYGETDEILIVKLRKGQ 157
[66][TOP]
>UniRef100_UPI000194E98D PREDICTED: hypothetical protein, partial n=1 Tax=Taeniopygia
guttata RepID=UPI000194E98D
Length = 129
Score = 130 bits (328), Expect = 3e-29
Identities = 69/130 (53%), Positives = 94/130 (72%), Gaps = 1/130 (0%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPLTS+ + M++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVP 413
L S++ V+P
Sbjct: 120 LISNNPRVIP 129
[67][TOP]
>UniRef100_Q9P5U3 Probable DNA-directed RNA polymerase II chain RPB3 n=1
Tax=Neurospora crassa RepID=Q9P5U3_NEUCR
Length = 337
Score = 130 bits (326), Expect = 6e-29
Identities = 75/151 (49%), Positives = 96/151 (63%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P VKI + + +FEL +T+ S AN+LRRVM++E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL +E + +SRDCD D CE SV +L KC D+ + V ++DL
Sbjct: 76 RLGLIPLNAEGIEQLLYSRDCDC---DEYCEHCSVTLNLHAKCTGDDIMQVCARDLVPVG 132
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
V V SP + +G +I+KLR GQ
Sbjct: 133 DRVNQVLGSPIINDPE--GQGPLILKLRHGQ 161
[68][TOP]
>UniRef100_Q2GNN7 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2GNN7_CHAGB
Length = 338
Score = 129 bits (325), Expect = 8e-29
Identities = 74/151 (49%), Positives = 94/151 (62%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P VKI + +FEL + D + AN+LRRVM+ E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAH 75
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL ++ + F+RDCD DG CE SV L KC DE + V ++DL +
Sbjct: 76 RLGLIPLNADGVEGLLFARDCDC---DGCCEHCSVRLTLHAKCTGDENMHVFARDLVPTG 132
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ V +P S + G +I+KLR GQ
Sbjct: 133 ERINQVLGTPVVSDSEGL--GALILKLRPGQ 161
[69][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 127 bits (320), Expect = 3e-28
Identities = 82/179 (45%), Positives = 103/179 (57%), Gaps = 20/179 (11%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
+G R P + ++E+ +D +F L TD SIANALRRV+I+EVPTIAIDLVE+ NSS
Sbjct: 5 DGDPRQRRPNIVVQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSC 64
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
L DEFIAHRLGLIPL S +A M F D D V LRVKC++D+T DVT
Sbjct: 65 LCDEFIAHRLGLIPLVSHKAADMEFPYDYAGDDE----TVTDVPIELRVKCVSDQTEDVT 120
Query: 375 SKDL-----YSSDHTVVPVDFSP------DTSSDSAVNKG---------IIIVKLRRGQ 491
S DL Y+ TV PV + P D ++ A G I+I+KLR+ Q
Sbjct: 121 SNDLLINGDYTQYDTVKPVHYRPSGRAFGDATASGAPADGSQADGDKHPILILKLRKNQ 179
[70][TOP]
>UniRef100_B7Z377 cDNA FLJ57937, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z377_HUMAN
Length = 155
Score = 127 bits (320), Expect = 3e-28
Identities = 68/131 (51%), Positives = 93/131 (70%), Gaps = 1/131 (0%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHRLGLIPL S+ + +++SRDC + +C SVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTFEEFCPEC---SVEFTLDVRCNEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPV 416
L S+ V+PV
Sbjct: 120 LISNSPRVIPV 130
[71][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 126 bits (317), Expect = 6e-28
Identities = 71/149 (47%), Positives = 95/149 (63%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
V + L+D F L+ D S+ANALRRVMI++VPT+AIDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHRL 70
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GLIPL+S++ + + D V L V+C+T++ +DVTS+D+ S D
Sbjct: 71 GLIPLSSKKVSELFKPYEYMGEDDSAT----DVHLELNVRCLTEQAMDVTSEDMVSYDER 126
Query: 405 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
V P+ F T SD+A GI+IVKLR Q
Sbjct: 127 VKPITFQ-GTVSDAAKPGGILIVKLRNKQ 154
[72][TOP]
>UniRef100_Q93338 Protein C36B1.3, partially confirmed by transcript evidence n=1
Tax=Caenorhabditis elegans RepID=Q93338_CAEEL
Length = 282
Score = 126 bits (317), Expect = 6e-28
Identities = 73/164 (44%), Positives = 108/164 (65%), Gaps = 9/164 (5%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P +++ EL +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 207 FIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIP S+ M+++RDC+ ++ +C S+ F L++KC + TL VT++
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDEC---SIPFILQMKCKDEATLAVTTEH 119
Query: 384 L---YSSDHTVVP-----VDFSPDTSSDSAVNKGIIIVKLRRGQ 491
L ++ D TV P + T + + I+IVKLR+GQ
Sbjct: 120 LMPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQ 163
[73][TOP]
>UniRef100_UPI0000E48A01 PREDICTED: hypothetical protein isoform 1, partial n=1
Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A01
Length = 246
Score = 125 bits (314), Expect = 1e-27
Identities = 69/129 (53%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Frame = +3
Query: 108 IANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCD 284
+AN++RR +++EVPTIAID VEI+ NSSVL+DEFI+HR+GLIPLTS+ + + F+RDC
Sbjct: 1 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDCG 60
Query: 285 ASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGI 464
+ C SVE L VKC D+T VTS+DL SS+ VVPV SSD I
Sbjct: 61 CEEFCSDC---SVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQESSDYGEVDDI 117
Query: 465 IIVKLRRGQ 491
+IVKLR+GQ
Sbjct: 118 LIVKLRKGQ 126
[74][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 125 bits (313), Expect = 2e-27
Identities = 78/173 (45%), Positives = 97/173 (56%), Gaps = 20/173 (11%)
Frame = +3
Query: 33 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 212
R P + ++EL + RF L TD S+ANALRRV+I+EVPT+AIDLV++ N+S L DEFI
Sbjct: 10 RSPSIVVQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEFI 69
Query: 213 AHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVK-CMTDETLDVTSKDLY 389
AHRLGLIPL SE+A+ M F D D V F L C + ET+DVTS DL
Sbjct: 70 AHRLGLIPLLSEKAVEMEFPYDYAGDDE----SVTDVHFELNTGICASAETVDVTSNDLV 125
Query: 390 SSDHTVVPVDFSPDTS-------------------SDSAVNKGIIIVKLRRGQ 491
D V PV++ P S D G++IVKLRRGQ
Sbjct: 126 CYDPRVAPVNYHPGESIKGKGGAMEFEAQAAARGPDDGPDIPGVVIVKLRRGQ 178
[75][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
Length = 275
Score = 124 bits (312), Expect = 2e-27
Identities = 75/156 (48%), Positives = 96/156 (61%), Gaps = 2/156 (1%)
Frame = +3
Query: 30 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 209
+R P + +R L+ D FEL++TD S ANALRR M++EVPTIAIDLVE+E N++VLNDEF
Sbjct: 10 SRKPTISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEF 69
Query: 210 IAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL- 386
+AHRLGLIPL S A+ + + G + F L V C + +DVTS DL
Sbjct: 70 LAHRLGLIPLVSRNAVYWK-----RPFEWSGDNDIIETAFSLDVMCEQEGVMDVTSNDLV 124
Query: 387 -YSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
D VVPV++ SA K I+I KLRRGQ
Sbjct: 125 PLEPDAGVVPVNY------HSATEKPIVICKLRRGQ 154
[76][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 124 bits (312), Expect = 2e-27
Identities = 71/149 (47%), Positives = 93/149 (62%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
V + L+D+ F+L+ D S+ANALRR+MI++VPT++IDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRL 70
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GLIPL S +A + + D V L V+C +D+T DVTS DL S D
Sbjct: 71 GLIPLDSTKASELVKPYEYTGDDDTAT----DVHLELNVRCQSDQTRDVTSDDLISHDER 126
Query: 405 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
V PV F T SA + GI+I KLR+ Q
Sbjct: 127 VKPVSFG-GTGGGSAKSGGILIAKLRKNQ 154
[77][TOP]
>UniRef100_C4QNG7 DNA-directed rna polymerase II subunit, putative n=1
Tax=Schistosoma mansoni RepID=C4QNG7_SCHMA
Length = 266
Score = 123 bits (308), Expect = 7e-27
Identities = 71/156 (45%), Positives = 95/156 (60%), Gaps = 1/156 (0%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V + ++ +F L +TD S+ANA+RRV I+EVPT+AID V+IE N+++LNDE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIA R+GLIPLT + + M + R+C + QC SVE L V C TD VT D
Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCREFCEQC---SVELTLDVCCTTDAPRHVTGAD 119
Query: 384 LYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
L SS+ V PV S + I+IVK+R+GQ
Sbjct: 120 LISSNRDVQPVPSRDADESSYVGQESILIVKMRKGQ 155
[78][TOP]
>UniRef100_UPI0000123F31 Hypothetical protein CBG12350 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI0000123F31
Length = 399
Score = 122 bits (307), Expect = 9e-27
Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 8/163 (4%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P +++ EL +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 207 FIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIP S+ M+++R+C+ ++ +C S+ F L+ KC + TL VT+ D
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTRECECAEFCDEC---SIPFILQTKCTDEATLAVTTAD 119
Query: 384 L--YSSDHTVVP-----VDFSPDTSSDSAVNKGIIIVKLRRGQ 491
L + TV P + + + I+IVKLR+GQ
Sbjct: 120 LRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQ 162
[79][TOP]
>UniRef100_A7EJ53 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7EJ53_SCLS1
Length = 335
Score = 120 bits (301), Expect = 5e-26
Identities = 73/156 (46%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+VKI E FEL + D S AN+LRR ++SEVPTIAID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLY--- 389
RLGLIPL S+ + ++RDCD DG CE SV L +C DE + V ++DL
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---DGNCELCSVTLTLHARCTGDEIMKVYARDLVVDP 131
Query: 390 --SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
++ PV PD G +I KLR+GQ
Sbjct: 132 QRANKWVGNPVITDPD-------GLGPVIAKLRKGQ 160
[80][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G229_PHATR
Length = 320
Score = 119 bits (298), Expect = 1e-25
Identities = 74/170 (43%), Positives = 102/170 (60%), Gaps = 15/170 (8%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
Y R PRV+I ++ +F L ++D S+AN LRR+MI+EVPT+AIDLVE NS+VLNDE
Sbjct: 3 YQRFPRVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDE 62
Query: 207 FIAHRLGLIPLTSERAMAMRFS---------RDCDASDGDGQCEFGSVEFHLRV--KCMT 353
+IAHR+GLIP+ + A +++ S R+C + +C SVEF L + K
Sbjct: 63 YIAHRMGLIPVRYQPAESLKGSDCSDAFLPHRECVCYEHCMRC---SVEFELDITYKVTG 119
Query: 354 DE----TLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+E L VTSKDL S++ V P F D A ++G+ IVKL GQ
Sbjct: 120 EEDVLAPLTVTSKDLVSNNELVQPAHFLSQDEQDEAQDEGVAIVKLGPGQ 169
[81][TOP]
>UniRef100_C4XY52 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY52_CLAL4
Length = 307
Score = 119 bits (297), Expect = 1e-25
Identities = 72/154 (46%), Positives = 94/154 (61%), Gaps = 3/154 (1%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
PRV IR+ + D F LR D S+AN+LRR M+SEVPT+AIDLVEI+VN+SVL DE ++H
Sbjct: 10 PRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTSVLADELLSH 69
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL---Y 389
RLGLIPL SE + +SRDC D C SV+ L KC +D T++V S DL +
Sbjct: 70 RLGLIPLNSEGIENLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMNVYSSDLAKFH 126
Query: 390 SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ PV P ++G +I KLR+ Q
Sbjct: 127 NGSKLGDPVIRDP-------AHRGPLICKLRKHQ 153
[82][TOP]
>UniRef100_B8PBS2 Predicted protein (Fragment) n=1 Tax=Postia placenta Mad-698-R
RepID=B8PBS2_POSPM
Length = 265
Score = 119 bits (297), Expect = 1e-25
Identities = 67/153 (43%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P V+IREL+ D F + + D ++AN+LRRVM++++PT+AID+VEIE N++VL DEFIAH
Sbjct: 4 PIVRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAH 63
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLG+IPL S MR++RDC C+F +VE L V C +DVTS L S
Sbjct: 64 RLGMIPLVSSNCDEGMRYTRDCTCL---SWCQFCAVELTLHVACHDGVAMDVTSMHLDVS 120
Query: 396 DHTVV-PVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
D P +F ++I K+R+GQ
Sbjct: 121 DELAKRPENFGHPVGKFDPSVSPVLIAKIRKGQ 153
[83][TOP]
>UniRef100_A6S2E5 RNA polymerase II subunit 3 n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6S2E5_BOTFB
Length = 336
Score = 119 bits (297), Expect = 1e-25
Identities = 72/156 (46%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+VKI E FEL + D S AN+LRR ++SEVPTIAID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLY--- 389
RLGLIPL S+ + ++RDCD +G CE SV L +C DE + V ++DL
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---EGNCELCSVTLTLHARCTGDEIMKVYARDLVVDP 131
Query: 390 --SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
++ PV PD G +I KLR+GQ
Sbjct: 132 QRANKWVGNPVITDPD-------GLGPVIAKLRKGQ 160
[84][TOP]
>UniRef100_B2B158 Predicted CDS Pa_3_9390 n=1 Tax=Podospora anserina
RepID=B2B158_PODAN
Length = 334
Score = 118 bits (296), Expect = 2e-25
Identities = 74/156 (47%), Positives = 95/156 (60%), Gaps = 5/156 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P VKI + +FEL++ D S AN+LRRVM++E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAH 75
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL +E + +SRDCD + CE SV+ L KC E + V+++DL
Sbjct: 76 RLGLIPLNAEGVEHLLYSRDCDCEE---YCENCSVKLTLHAKCTGYENMSVSARDL---- 128
Query: 399 HTVVPVDFSPDTSSDSAV-----NKGIIIVKLRRGQ 491
VPV + S + V G +I+KLR Q
Sbjct: 129 ---VPVGERINQSLGTPVINDKDGTGPLILKLRPEQ 161
[85][TOP]
>UniRef100_A3GF98 45 kDa subunit of RNA polymerase II n=1 Tax=Pichia stipitis
RepID=A3GF98_PICST
Length = 315
Score = 118 bits (296), Expect = 2e-25
Identities = 62/116 (53%), Positives = 80/116 (68%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P V IRE + D F LRD D ++AN++RRVM++EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIRESERDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL 386
RLGL+PL SE + +SRDC D C SV L KC TD T++V + DL
Sbjct: 69 RLGLVPLVSEGIENLTYSRDCTC---DNYCPKCSVRLELTAKCDTDSTMNVYATDL 121
[86][TOP]
>UniRef100_Q6BUW0 DEHA2C07546p n=1 Tax=Debaryomyces hansenii RepID=Q6BUW0_DEBHA
Length = 311
Score = 118 bits (295), Expect = 2e-25
Identities = 72/151 (47%), Positives = 92/151 (60%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
PRV IR + F L+D D ++AN++RR M++EVPT+AIDLVEIEVN+SVL DEFI+H
Sbjct: 11 PRVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISH 70
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL SE + +SRDC D C SV+ L KC TD T+ V S DL +
Sbjct: 71 RLGLIPLNSEGIDNLSYSRDCTC---DQYCANCSVKLELTAKCDTDSTMSVYSSDL-AKF 126
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
H + D + KG +I KLR+ Q
Sbjct: 127 HNGSKLG---DPVARDNHRKGPLICKLRKHQ 154
[87][TOP]
>UniRef100_A8XFM5 C. briggsae CBR-RPB-3 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XFM5_CAEBR
Length = 280
Score = 117 bits (293), Expect = 4e-25
Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 8/163 (4%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P +++ EL +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 207 FIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
FIAHR+GLIP S+ M+++R C+ ++ +C S+ F L+ KC + TL VT+ D
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTR-CECAEFCDEC---SIPFILQTKCTDEATLAVTTAD 118
Query: 384 L--YSSDHTVVP-----VDFSPDTSSDSAVNKGIIIVKLRRGQ 491
L + TV P + + + I+IVKLR+GQ
Sbjct: 119 LRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQ 161
[88][TOP]
>UniRef100_C5MDV1 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MDV1_CANTT
Length = 327
Score = 117 bits (293), Expect = 4e-25
Identities = 68/151 (45%), Positives = 90/151 (59%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P V IR + D F LR+ D S+AN++RR M++EVPT++IDLVEIE N+SVL DEF++H
Sbjct: 9 PGVTIRTAEKDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIEKNTSVLADEFLSH 68
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL SE + +SRDC D C SV L C + T++V + DL +
Sbjct: 69 RLGLIPLVSEGIKDLTYSRDCTC---DNYCTKCSVTLQLLASCTAETTMNVYASDLLKTT 125
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
HT + D N+G II KLR+ Q
Sbjct: 126 HTGSKLG---DPVFRDPRNRGPIICKLRKDQ 153
[89][TOP]
>UniRef100_A5E4Q9 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5E4Q9_LODEL
Length = 336
Score = 117 bits (293), Expect = 4e-25
Identities = 69/153 (45%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P V +R+ + D F L+ D S+AN+LRR M++EVPT+AIDLVEI+VN+SVL DEF+AH
Sbjct: 7 PSVIMRDAEKDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL S+ + +SRDC D C SV L KC +D T++V + DL +
Sbjct: 67 RLGLIPLDSQGIENLLYSRDCAC---DNYCSKCSVTLELTAKCDSDSTMNVCASDLLKLN 123
Query: 399 HTVV--PVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
++ P+ P N+G +I KLRR Q
Sbjct: 124 TELLGKPIIRDPQ-------NRGPLICKLRRHQ 149
[90][TOP]
>UniRef100_Q4P8L3 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P8L3_USTMA
Length = 329
Score = 116 bits (291), Expect = 7e-25
Identities = 68/167 (40%), Positives = 98/167 (58%), Gaps = 16/167 (9%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P++ +R+L D A F L + D S AN+LRR+MI+++PT+AID+VEI N++VL DE +AH
Sbjct: 12 PKITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAH 71
Query: 219 RLGLIPLTS-ERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLG++PL S + A A+ RDC DG +C SVE LR +C T L+VTS+DL S
Sbjct: 72 RLGMVPLLSMDCAKALVDHRDCACEDGCDRC---SVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 396 DHTVVPVDFSPDTSSDSAVNK---------------GIIIVKLRRGQ 491
D + D ++ A K I++VK+ +GQ
Sbjct: 129 DTIENATIYDDDAMAEPAAPKHPDFGRPVGHDGSIAPIMLVKMSKGQ 175
[91][TOP]
>UniRef100_C7YWI1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YWI1_NECH7
Length = 335
Score = 116 bits (290), Expect = 9e-25
Identities = 72/151 (47%), Positives = 89/151 (58%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+VKI FEL T+ + ANALRRV+ +EVPTIAIDLVEIE+NSSVL DEFIAH
Sbjct: 15 PQVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIAH 74
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL S+ + SRDCD + CE SV +L KC +DE + V ++DL
Sbjct: 75 RLGLIPLDSKGVGELNNSRDCDC---EQYCEQCSVTLNLHAKCTSDEIMKVYARDLVVDG 131
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
V T + G +I KLR+ Q
Sbjct: 132 RHANSVGSPVITDPE---GYGCLIAKLRKDQ 159
[92][TOP]
>UniRef100_Q5A462 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
albicans RepID=Q5A462_CANAL
Length = 318
Score = 115 bits (288), Expect = 1e-24
Identities = 66/151 (43%), Positives = 90/151 (59%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P V IRE + D F L++ D ++AN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL SE + +SRDC D C SV L C T+ T++V + DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLIANCATESTMNVYASDLQKMS 125
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
H + D +G +I KLR+ Q
Sbjct: 126 HNGSKLG---DPVIRDPQARGPLICKLRKHQ 153
[93][TOP]
>UniRef100_B9WGL5 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Candida
dubliniensis CD36 RepID=B9WGL5_CANDC
Length = 313
Score = 115 bits (288), Expect = 1e-24
Identities = 66/151 (43%), Positives = 90/151 (59%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P V IRE + D F L++ D ++AN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL SE + +SRDC D C SV L C T+ T++V + DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLVANCATESTMNVYASDLQKMS 125
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
H + D +G +I KLR+ Q
Sbjct: 126 HNGSKLG---DPVIRDPQARGPLICKLRKHQ 153
[94][TOP]
>UniRef100_Q0CYF6 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Aspergillus terreus NIH2624 RepID=Q0CYF6_ASPTN
Length = 331
Score = 115 bits (287), Expect = 2e-24
Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F+L D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 13 PQVTVREAEPYRVDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAH 72
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL--- 386
RLGLIPL S+ + ++RDC+ D +C SV L +C D+ + V ++DL
Sbjct: 73 RLGLIPLNSKNCDQDLEYTRDCECEDHCARC---SVTLQLHARCTGDDIMRVYARDLAVA 129
Query: 387 --YSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
++D PV P+ KG +I KLRRGQ
Sbjct: 130 GERANDWVGTPVITDPE-------GKGPLICKLRRGQ 159
[95][TOP]
>UniRef100_UPI000023DAEE hypothetical protein FG01447.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023DAEE
Length = 337
Score = 114 bits (286), Expect = 3e-24
Identities = 72/155 (46%), Positives = 90/155 (58%), Gaps = 4/155 (2%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+VKI FEL T+ S ANA+RRV+ +EVPTIAIDLVEIE NSSVL DEFIAH
Sbjct: 15 PQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAH 74
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLY--- 389
RLGLIPL S+ + +SRDCD + CE SV L KC +DE + V ++DL
Sbjct: 75 RLGLIPLDSKGVAELNYSRDCDC---EQYCEQCSVTLTLHAKCTSDEIMKVYARDLVVDG 131
Query: 390 -SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ P+ P+ G +I KLR+ Q
Sbjct: 132 RHGNSVGSPMIMDPE-------GYGCLIAKLRKHQ 159
[96][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BWN8_THAPS
Length = 297
Score = 114 bits (285), Expect = 3e-24
Identities = 73/163 (44%), Positives = 95/163 (58%), Gaps = 10/163 (6%)
Frame = +3
Query: 33 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 212
R P+V+I + +F L +TD S+AN LRR+MI+EVPT+AIDLVE NSSVLNDE+I
Sbjct: 2 RFPKVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYI 61
Query: 213 AHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHL----------RVKCMTDET 362
AHRLGL+P+ R MA ++C D +C VEF L R D
Sbjct: 62 AHRLGLVPI---RFMAEGSLKECVCYD---RCPRCCVEFELDVNFDKVNQTRPDTERDLA 115
Query: 363 LDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
L VTS+DL S++ V P F + D + ++GI IVKL GQ
Sbjct: 116 LTVTSRDLISNNMLVSPAHFLNEEEQDESHDEGISIVKLGPGQ 158
[97][TOP]
>UniRef100_A1C6Y7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus clavatus
RepID=A1C6Y7_ASPCL
Length = 333
Score = 114 bits (285), Expect = 3e-24
Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYHVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAH 71
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLY-- 389
RLGLIPL S+ + ++RDCD D +C SV L +C DE + V ++DL
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCDCEDRCARC---SVTLTLHARCTGDEIMPVYARDLVVT 128
Query: 390 ---SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+++ PV P+ KG +I KLRRGQ
Sbjct: 129 GERANEWVGTPVLTDPE-------GKGSLICKLRRGQ 158
[98][TOP]
>UniRef100_C1H5R6 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H5R6_PARBA
Length = 352
Score = 113 bits (283), Expect = 6e-24
Identities = 67/152 (44%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 219 RLGLIPLTSERAMA-MRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ A M +SRDCD G +C V L V+C ++ + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDCEGGCARC---IVMLSLNVRCTGEDVMKVYARDLIIV 130
Query: 396 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
SP + A KG +I KL RGQ
Sbjct: 131 GDRANEWVGSPVIT--DAEGKGPVICKLSRGQ 160
[99][TOP]
>UniRef100_C1GI99 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GI99_PARBD
Length = 352
Score = 113 bits (283), Expect = 6e-24
Identities = 67/152 (44%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 219 RLGLIPLTSERAMA-MRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ A M +SRDCD G +C V L V+C ++ + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDCEGGCARC---VVMLSLNVRCTGEDVMKVYARDLIIV 130
Query: 396 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
SP + A KG +I KL RGQ
Sbjct: 131 GDRANEWVGSPVIT--DAEGKGPVICKLSRGQ 160
[100][TOP]
>UniRef100_C0SC71 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SC71_PARBP
Length = 283
Score = 113 bits (283), Expect = 6e-24
Identities = 67/152 (44%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 219 RLGLIPLTSERAMA-MRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ A M +SRDCD G +C V L V+C ++ + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDCEGGCARC---VVMLSLNVRCTGEDVMKVYARDLIIV 130
Query: 396 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
SP + A KG +I KL RGQ
Sbjct: 131 GDRANEWVGSPVIT--DAEGKGPVICKLSRGQ 160
[101][TOP]
>UniRef100_A1DHL4 RNA polymerase II subunit 3 n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1DHL4_NEOFI
Length = 336
Score = 113 bits (283), Expect = 6e-24
Identities = 66/152 (43%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ + ++RDC+ D +C SV L +C DE + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECEDHCARC---SVTLTLHARCTGDEIMPVYARDLVVS 128
Query: 396 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
++ D KG +I KLRRGQ
Sbjct: 129 GERA--NEWVGDPVITDPEGKGPLICKLRRGQ 158
[102][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CSH3_CRYPV
Length = 355
Score = 113 bits (282), Expect = 7e-24
Identities = 65/154 (42%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Frame = +3
Query: 33 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 212
R P+ +I EL + RF L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 213 AHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYS 392
HR+GLIPL S F C+ + +C SVE+ L V C T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFKDRCECQERCNKC---SVEYLLDVTCEGGATRNVTHYDIQP 124
Query: 393 -SDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ T+VP+ S +N GI+I KL GQ
Sbjct: 125 VATSTLVPMPVPKKDDSVDGMNNGILIAKLGPGQ 158
[103][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
RepID=Q5CNH1_CRYHO
Length = 355
Score = 113 bits (282), Expect = 7e-24
Identities = 65/154 (42%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Frame = +3
Query: 33 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 212
R P+ +I EL + RF L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 213 AHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYS 392
HR+GLIPL S F C+ + +C SVE+ L V C T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFKDRCECQERCNKC---SVEYLLDVTCEGGATRNVTHYDIQP 124
Query: 393 -SDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ T+VP+ S +N GI+I KL GQ
Sbjct: 125 VATSTLVPMPVPKKDDSVDGMNNGILIAKLGPGQ 158
[104][TOP]
>UniRef100_B0D0L9 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D0L9_LACBS
Length = 304
Score = 113 bits (282), Expect = 7e-24
Identities = 72/171 (42%), Positives = 98/171 (57%), Gaps = 20/171 (11%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P V+IRELK D F L + D + AN+LRRVM++++PT+AID+VEIE+N++VL DEFIAH
Sbjct: 9 PTVRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAH 68
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLG++PL S A+R +RDC G C F ++ L V C D T++VTS L
Sbjct: 69 RLGMVPLLSSNCDEAIRSTRDCTCLAG---CSFCAIMLVLNVGCHDDTTMEVTSAHL--- 122
Query: 396 DHTVVPVDFSPDTSSDSA-------------VNKG------IIIVKLRRGQ 491
V+P +SDS V K I+I K+R+GQ
Sbjct: 123 --DVIPYPEENLDTSDSGEELSKRGEYFGHPVGKNEPGVAPILICKIRKGQ 171
[105][TOP]
>UniRef100_A2QC01 Catalytic activity: N nucleoside triphosphate <=> N diphosphate +
(RNA)(N) n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QC01_ASPNC
Length = 338
Score = 113 bits (282), Expect = 7e-24
Identities = 67/157 (42%), Positives = 92/157 (58%), Gaps = 6/157 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F+L D + AN+LRRVM+SE+PT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ + ++RDC+ D +C SV L +C D+ + V ++DL S
Sbjct: 72 RLGLIPLISKNCDQDVEYTRDCECEDHCARC---SVTLSLHARCTGDDIMRVYARDLVVS 128
Query: 396 DHTV-----VPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
PV P+ G +I KLRRGQ
Sbjct: 129 GERANEWVGNPVILDPE-------GNGPLICKLRRGQ 158
[106][TOP]
>UniRef100_B6K2N9 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6K2N9_SCHJY
Length = 308
Score = 112 bits (281), Expect = 1e-23
Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 5/156 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P V I+ + + F L +TD S+AN+LRRV++ E+PT+AIDLVEI VN+SV+ DEF+AH
Sbjct: 5 PNVTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAH 64
Query: 219 RLGLIPLTSER-----AMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
RLG+IPL S + + ++R+CD D C SVE L KC D T++V ++D
Sbjct: 65 RLGMIPLNSNNIDEPPPVGLEYTRNCDC---DQYCNKCSVELSLNAKCTGDGTMEVYARD 121
Query: 384 LYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
L ++ + D S G +I+KLR+ Q
Sbjct: 122 LVVDSNSTLGQPVLADARS-----HGPLILKLRKEQ 152
[107][TOP]
>UniRef100_Q1DX59 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
RepID=Q1DX59_COCIM
Length = 345
Score = 112 bits (280), Expect = 1e-23
Identities = 69/156 (44%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ + M ++R+CD G +C + L KC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDCEGGCSRC---VITLQLHAKCTGEGVMVVYARDL--- 126
Query: 396 DHTVVPVDFSPDTSSDSAVN----KGIIIVKLRRGQ 491
VV D + + + +N KG II KLRRGQ
Sbjct: 127 ---VVVGDRANEWVGNPVINDPAGKGPIICKLRRGQ 159
[108][TOP]
>UniRef100_C5P0B5 DNA-directed RNA polymerase II 45 kDa polypeptide, putative n=1
Tax=Coccidioides posadasii C735 delta SOWgp
RepID=C5P0B5_COCP7
Length = 345
Score = 112 bits (280), Expect = 1e-23
Identities = 69/156 (44%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ + M ++R+CD G +C + L KC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDCEGGCSRC---LITLQLHAKCTGEGVMVVYARDL--- 126
Query: 396 DHTVVPVDFSPDTSSDSAVN----KGIIIVKLRRGQ 491
VV D + + + +N KG II KLRRGQ
Sbjct: 127 ---VVVGDRANEWVGNPVINDPAGKGPIICKLRRGQ 159
[109][TOP]
>UniRef100_C5GT99 RNA polymerase II subunit 3 n=2 Tax=Ajellomyces dermatitidis
RepID=C5GT99_AJEDR
Length = 346
Score = 112 bits (280), Expect = 1e-23
Identities = 69/156 (44%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F L D + AN+LRR +++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 219 RLGLIPLTSERAMA-MRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ A M +SRDCD G +C V L+ +C ++ + V ++DL
Sbjct: 73 RLGLIPLNSKNCDADMYYSRDCDCEGGCARC---VVTLSLQARCTGEDIMKVYARDL--- 126
Query: 396 DHTVVPVDFSPDTSSD----SAVNKGIIIVKLRRGQ 491
VV D + + + A KG +I KLRRGQ
Sbjct: 127 ---VVVGDRANEWVGNPVITDAEGKGPLICKLRRGQ 159
[110][TOP]
>UniRef100_C0NSH0 DNA-directed RNA polymerase II polypeptide n=1 Tax=Ajellomyces
capsulatus G186AR RepID=C0NSH0_AJECG
Length = 475
Score = 112 bits (280), Expect = 1e-23
Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F L D + AN+LRR +++E+PT+AID+VEIE N+SVL DEFI+H
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72
Query: 219 RLGLIPLTSERAMA-MRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ A M +SRDCD G +C V L+ +C ++ + V ++DL
Sbjct: 73 RLGLIPLNSKNCDADMEYSRDCDCEGGCARC---VVTLQLQARCTGEDIMKVYARDL--- 126
Query: 396 DHTVVPVDFSPDTSSD----SAVNKGIIIVKLRRGQ 491
VV D + + + A KG +I KLRRGQ
Sbjct: 127 ---VVVGDRANEWVGNPVIMDAEGKGPVICKLRRGQ 159
[111][TOP]
>UniRef100_A5DQ44 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DQ44_PICGU
Length = 305
Score = 112 bits (280), Expect = 1e-23
Identities = 59/115 (51%), Positives = 79/115 (68%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
RV IR+ + D F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 222 LGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL 386
LG+IPL SE + +SRDC D C SV+ L KC +D T+ V + DL
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMSVYATDL 120
[112][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
Length = 348
Score = 112 bits (279), Expect = 2e-23
Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Frame = +3
Query: 33 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 212
R P ++I E + +F L +TD S+ANALRR+M++E+PT+AIDLV I N+SVL+DEFI
Sbjct: 7 RTPHIEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFI 66
Query: 213 AHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYS 392
HRLGL+P+ S + F C + +C SV++ L +KC +VT D+YS
Sbjct: 67 VHRLGLLPIDSRQIRDFNFKDRCGCQERCNKC---SVDYTLDLKCEGPTVRNVTHLDIYS 123
Query: 393 S---DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ + +PV D + + N+GI+I KL GQ
Sbjct: 124 TLPVPNIPLPVPRKEDVTDPN--NEGILIAKLGPGQ 157
[113][TOP]
>UniRef100_C8V1J2 RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090) n=2
Tax=Emericella nidulans RepID=C8V1J2_EMENI
Length = 333
Score = 112 bits (279), Expect = 2e-23
Identities = 66/157 (42%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F+L D + AN+LRRVM++E+PT+AID+VE+E NSSVL DE +AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLY-- 389
RLGLIPL S+ + ++RDC+ D +C SV L +C +DE + V ++DL
Sbjct: 72 RLGLIPLDSKNCDQDVEYTRDCECEDHCARC---SVTLSLHARCTSDEIMRVYARDLVIT 128
Query: 390 ---SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+++ PV PD G +I KLRRGQ
Sbjct: 129 GERANEWVGNPVITDPD-------GNGPLICKLRRGQ 158
[114][TOP]
>UniRef100_P16370 DNA-directed RNA polymerase II subunit RPB3 n=6 Tax=Saccharomyces
cerevisiae RepID=RPB3_YEAST
Length = 318
Score = 111 bits (277), Expect = 3e-23
Identities = 68/151 (45%), Positives = 93/151 (61%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+VKIRE D F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL S + +SRDC D C+ SV L+ ++ T +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 122
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ ++ + D N G++I KLR+GQ
Sbjct: 123 N-LMGRNIGHPIIQDKEGN-GVLICKLRKGQ 151
[115][TOP]
>UniRef100_Q2UF63 RNA polymerase II n=1 Tax=Aspergillus oryzae RepID=Q2UF63_ASPOR
Length = 342
Score = 110 bits (275), Expect = 5e-23
Identities = 67/157 (42%), Positives = 91/157 (57%), Gaps = 6/157 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F+L D + AN+LRR M++EVPTIAIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ + ++RDC+ D +C SV L +C D+ + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECEDHCARC---SVTLTLHARCTGDDIMRVYARDLVVS 128
Query: 396 DHTV-----VPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
PV P+ G +I KLRRGQ
Sbjct: 129 GERANEWVGNPVITDPE-------GNGPLICKLRRGQ 158
[116][TOP]
>UniRef100_C4JV60 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JV60_UNCRE
Length = 345
Score = 110 bits (275), Expect = 5e-23
Identities = 68/156 (43%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +R+++ F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVRDVETHRVDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ + M ++RDCD G +C + L KC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARDCDCEGGCSRC---IITLQLHAKCTGEGVMVVYARDL--- 126
Query: 396 DHTVVPVDFSPDTSSDSAVN----KGIIIVKLRRGQ 491
VV D + + + +N KG II KLRR Q
Sbjct: 127 ---VVIGDRANEWVGNPVINDPAGKGPIICKLRRDQ 159
[117][TOP]
>UniRef100_B8NGG7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8NGG7_ASPFN
Length = 338
Score = 110 bits (275), Expect = 5e-23
Identities = 67/157 (42%), Positives = 91/157 (57%), Gaps = 6/157 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F+L D + AN+LRR M++EVPTIAIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLGLIPL S+ + ++RDC+ D +C SV L +C D+ + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECEDHCARC---SVTLTLHARCTGDDIMRVYARDLVVS 128
Query: 396 DHTV-----VPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
PV P+ G +I KLRRGQ
Sbjct: 129 GERANEWVGNPVITDPE-------GNGPLICKLRRGQ 158
[118][TOP]
>UniRef100_A8N5W0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N5W0_COPC7
Length = 366
Score = 110 bits (275), Expect = 5e-23
Identities = 60/128 (46%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P V++RE+K D F L + D + AN+ RRV+++++PT+AIDLVE E N+SVL DE+IAH
Sbjct: 8 PIVRVREVKKDKVNFVLENVDLAFANSFRRVVMADIPTVAIDLVEFEANTSVLPDEYIAH 67
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLG IPL S A+R++RDC QC + +V+ L V C D T++VTS L
Sbjct: 68 RLGQIPLISTNCDEAIRYTRDCTCL---SQCSYCAVQLRLDVACNDDTTMEVTSNHL--- 121
Query: 396 DHTVVPVD 419
VVP+D
Sbjct: 122 --EVVPLD 127
[119][TOP]
>UniRef100_UPI000151B3AC conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151B3AC
Length = 305
Score = 110 bits (274), Expect = 6e-23
Identities = 58/115 (50%), Positives = 78/115 (67%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
RV IR+ + D F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 222 LGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL 386
LG+IPL SE + +SRDC D C V+ L KC +D T+ V + DL
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCLVKLELTAKCDSDSTMSVYATDL 120
[120][TOP]
>UniRef100_Q6CQL6 KLLA0D16170p n=1 Tax=Kluyveromyces lactis RepID=Q6CQL6_KLULA
Length = 307
Score = 110 bits (274), Expect = 6e-23
Identities = 69/151 (45%), Positives = 91/151 (60%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+VKIRE D F L + D ++AN+LRRVMISE+PT+AID VEIE N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL S + + RDC D C+ SVE L ++ T +V +KDL +
Sbjct: 66 RLGLIPLQSADIDQVVYCRDCYCED---HCDRCSVELILHAIGESESTTNVYAKDLQITS 122
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ + D N G++I KLR+GQ
Sbjct: 123 -DLKGRNIGHPIIQDREAN-GVLICKLRKGQ 151
[121][TOP]
>UniRef100_Q6FPN4 Similar to uniprot|P16370 Saccharomyces cerevisiae YIL021w RPB3 n=1
Tax=Candida glabrata RepID=Q6FPN4_CANGA
Length = 312
Score = 109 bits (273), Expect = 8e-23
Identities = 66/151 (43%), Positives = 93/151 (61%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+VKIRE D F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEF+AH
Sbjct: 6 PQVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAH 65
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL S + +SRDC D C+ SV L+ ++ T +V +KDL
Sbjct: 66 RLGLIPLQSTDIEQLEYSRDCFCED---HCDKCSVVLTLQAVGESESTTNVYAKDLLIVS 122
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ ++ + D N G++I KLR+GQ
Sbjct: 123 N-LMGRNIGHPIIQDKEGN-GVLICKLRKGQ 151
[122][TOP]
>UniRef100_B6QC29 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC29_PENMQ
Length = 352
Score = 108 bits (270), Expect = 2e-22
Identities = 67/158 (42%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SVL DEF+AH
Sbjct: 12 PQVTVRETEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAH 71
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKC-MTDETLDVTSKDLY- 389
RLGLIPL S+ M ++RDC +C SV L +C D+ + V S+DL
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTCESWCSRC---SVRLTLHARCNQADDVMKVYSRDLVV 128
Query: 390 ----SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+++ PV P+ KG +I KL +GQ
Sbjct: 129 TGDRANEWVGNPVITDPE-------GKGPLIAKLIKGQ 159
[123][TOP]
>UniRef100_B0XTA3 RNA polymerase II subunit 3 n=2 Tax=Aspergillus fumigatus
RepID=B0XTA3_ASPFC
Length = 392
Score = 108 bits (270), Expect = 2e-22
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
Frame = +3
Query: 81 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 257
F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+
Sbjct: 82 FKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQ 141
Query: 258 AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTS 437
+ ++RDCD D +C SV L +C DE + V ++DL S ++ D
Sbjct: 142 DVEYTRDCDCEDHCARC---SVTLTLHARCTGDEIMPVYARDLVVSGERA--NEWVGDPV 196
Query: 438 SDSAVNKGIIIVKLRRGQ 491
KG +I KLRRGQ
Sbjct: 197 ITDPEGKGPLICKLRRGQ 214
[124][TOP]
>UniRef100_B8M3N2 RNA polymerase II subunit 3 n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8M3N2_TALSN
Length = 353
Score = 107 bits (268), Expect = 3e-22
Identities = 66/158 (41%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SV+ DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAH 71
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKC-MTDETLDVTSKDLY- 389
RLGLIPL S+ M ++RDC +C SV L +C D+ + V S+DL
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTCESWCSRC---SVRLTLHARCNQADDVMKVYSRDLVV 128
Query: 390 ----SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+++ PV P+ KG +I KL +GQ
Sbjct: 129 TGDRANEWVGNPVITDPE-------GKGPLIAKLIKGQ 159
[125][TOP]
>UniRef100_A9URC4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9URC4_MONBE
Length = 276
Score = 107 bits (266), Expect = 5e-22
Identities = 64/151 (42%), Positives = 86/151 (56%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
PR+++ E D F L+ D ++AN+ RRVMI+EVPT+AID V I N+SVL+DEF+AH
Sbjct: 11 PRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDEFLAH 70
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPLTSE A + RDC + C+ V L V+ T+E VT+ DL S
Sbjct: 71 RLGLIPLTSEAADKFYYPRDCTLCEMG--CDHCQVMLTLDVEGHTEEPTHVTTDDLISQA 128
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+S + I+I KL +GQ
Sbjct: 129 AGDFMAVKPISAREESNIRNPIVICKLAKGQ 159
[126][TOP]
>UniRef100_C5DHI5 KLTH0E04598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DHI5_LACTC
Length = 328
Score = 107 bits (266), Expect = 5e-22
Identities = 66/151 (43%), Positives = 92/151 (60%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+VKIRE D F L + D ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISH 65
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL S + + RDC D C+ SV L+ ++ T +V +KDL
Sbjct: 66 RLGLIPLQSSDINDLIYCRDCYCED---HCDRCSVVLTLQAVGESESTTNVYAKDLVIVS 122
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ ++ + D N G++I KLR+GQ
Sbjct: 123 N-LMGRNIGHPIIQDKDGN-GVLICKLRKGQ 151
[127][TOP]
>UniRef100_Q75B05 ADL120Cp n=1 Tax=Eremothecium gossypii RepID=Q75B05_ASHGO
Length = 311
Score = 106 bits (265), Expect = 7e-22
Identities = 66/151 (43%), Positives = 90/151 (59%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+VKIRE D F L + D S+AN+LRR+MI+E+PT+AID VEIE N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISH 65
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGL+PL S+ + + RDC D C+ SV L ++ T +V +KDL
Sbjct: 66 RLGLVPLQSKDIDQLVYCRDCFCED---HCDRCSVLLTLHAVGESESTTNVYAKDLQIVS 122
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ + D N G++I KLR+GQ
Sbjct: 123 -DLGGKNIGHPIIQDKEAN-GVLICKLRKGQ 151
[128][TOP]
>UniRef100_P37382 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces pombe RepID=RPB3_SCHPO
Length = 297
Score = 106 bits (265), Expect = 7e-22
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 5/154 (3%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
+ IR + + F L +T ++AN+LRRV+++E+PT+AIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 225 GLIPLTSER-----AMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLY 389
G+IPL S + + ++R+CD D C SVE L KC + T+++ ++DL
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123
Query: 390 SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
S ++ + D S +G +I KLR+ Q
Sbjct: 124 VSSNSSLGHPILADPKS-----RGPLICKLRKEQ 152
[129][TOP]
>UniRef100_B2W6Y7 DNA-directed RNA polymerase subunit D n=1 Tax=Pyrenophora
tritici-repentis Pt-1C-BFP RepID=B2W6Y7_PYRTR
Length = 334
Score = 106 bits (264), Expect = 9e-22
Identities = 62/149 (41%), Positives = 87/149 (58%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
V+ E A F +++ + AN+LRRVM+SE+PT+AID+VE+ N+SVL DEF+ HRL
Sbjct: 12 VRFLEANSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRL 71
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GL+PL+S+ + +SRDCD +G C+ +V L KC E + V ++DL T
Sbjct: 72 GLVPLSSKGVDDLIYSRDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVYARDLVIESRT 128
Query: 405 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
P D + G IVKLRRGQ
Sbjct: 129 --PNDEVGKPVITDSEGTGSCIVKLRRGQ 155
[130][TOP]
>UniRef100_C5FPK3 RNA polymerase II subunit 3 n=1 Tax=Microsporum canis CBS 113480
RepID=C5FPK3_NANOT
Length = 359
Score = 105 bits (263), Expect = 1e-21
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 6/143 (4%)
Frame = +3
Query: 81 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 257
F L D + AN+ RR +++E+PT+AID+VEIEVN+SVL DEFI+HRLGLIPL S+
Sbjct: 37 FRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDT 96
Query: 258 AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLY-----SSDHTVVPVDF 422
M +SRDCD +G C+ + L KC ++E + V ++DL +++ PV
Sbjct: 97 DMLYSRDCDC---EGGCQRCVINLSLHAKCTSEEIMKVYARDLVVVGDRANEWVGNPVLT 153
Query: 423 SPDTSSDSAVNKGIIIVKLRRGQ 491
P+ KG II KLRRGQ
Sbjct: 154 DPE-------GKGPIICKLRRGQ 169
[131][TOP]
>UniRef100_C4R7L2 RNA polymerase II third largest subunit B44, part of central core
n=1 Tax=Pichia pastoris GS115 RepID=C4R7L2_PICPG
Length = 304
Score = 105 bits (263), Expect = 1e-21
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 5/159 (3%)
Frame = +3
Query: 30 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 209
++ P+V I +DD L D + S+AN+LRR M++EVPT+AIDLVEI++N+SVL DEF
Sbjct: 2 SKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEF 61
Query: 210 IAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLY 389
I+HRLGLIPL SE M++SRDC D C+ SV L + +E + D+Y
Sbjct: 62 ISHRLGLIPLVSEDVEEMKYSRDCTCED---YCDECSVVLELSARHEGEE----GTTDVY 114
Query: 390 SSDHTVVPVDFSPDTSSDSAV-----NKGIIIVKLRRGQ 491
SS +++ V + + V ++GI++ KLR Q
Sbjct: 115 SS--SLIKVSGPGNLNVGEPVRRDDYDQGILLCKLRNHQ 151
[132][TOP]
>UniRef100_UPI000069DABC DNA-directed RNA polymerase II subunit RPB3 (RNA polymerase II
subunit B3) (RNA polymerase II subunit 3) (DNA-directed
RNA polymerase II subunit C) (DNA-directed RNA
polymerase II 33 kDa polypeptide) (RPB33) (RPB31). n=1
Tax=Xenopus (Silurana) tropicalis RepID=UPI000069DABC
Length = 275
Score = 105 bits (261), Expect = 2e-21
Identities = 66/159 (41%), Positives = 102/159 (64%), Gaps = 4/159 (2%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT--S 377
FIAHR+GLIPLTS+ + +++SR ++G C + +F + C+ + +T +
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRGNSVTEG---CRCAN-KFTGLLGCLPFPSFQITQVT 118
Query: 378 KDLYSSDHTVVPVDFSPDTSSDSAVNK-GIIIVKLRRGQ 491
K + ++ ++ S D + V + I+IVKLR+GQ
Sbjct: 119 KLVNTTFFSLQVTSRSRDNDPNDYVEQDDILIVKLRKGQ 157
[133][TOP]
>UniRef100_C5DWL5 ZYRO0D15796p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DWL5_ZYGRC
Length = 308
Score = 105 bits (261), Expect = 2e-21
Identities = 65/151 (43%), Positives = 91/151 (60%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+VKIRE + F L + ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFIAH
Sbjct: 6 PQVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAH 65
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGLIPL S + + RDC D C+ SV L+ ++ T +V +KDL
Sbjct: 66 RLGLIPLQSTDIEQLEYCRDCFCED---HCDKCSVVLTLQAIGESESTTNVYAKDLVIVS 122
Query: 399 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ ++ + D N G++I KLR+GQ
Sbjct: 123 N-LMGRNLGHPIIQDKEGN-GVLICKLRKGQ 151
[134][TOP]
>UniRef100_Q6C2S4 YALI0F05566p n=1 Tax=Yarrowia lipolytica RepID=Q6C2S4_YARLI
Length = 314
Score = 104 bits (260), Expect = 3e-21
Identities = 61/129 (47%), Positives = 82/129 (63%)
Frame = +3
Query: 105 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 284
++AN+LRRVM++E+PT+AIDLVEI N+SVL DEFI+HRLGLIPL S+ + +SRDC
Sbjct: 21 TLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVNDLEYSRDCV 80
Query: 285 ASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGI 464
D C+ SV L C D+T+D+ S+DL P + +D A KGI
Sbjct: 81 C---DEYCDKCSVVLMLDATCTGDDTMDIYSRDLMVHTTPERP-ELGKPIYTDPA-KKGI 135
Query: 465 IIVKLRRGQ 491
+I KLR+ Q
Sbjct: 136 LICKLRKNQ 144
[135][TOP]
>UniRef100_C4V9J5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4V9J5_NOSCE
Length = 233
Score = 104 bits (260), Expect = 3e-21
Identities = 58/123 (47%), Positives = 78/123 (63%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
++ I E D++ +F LRDT S ANALRR++ISEVPT+ IDLVEIE+N++ L DE I+HR
Sbjct: 2 KILIEESTDNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHR 61
Query: 222 LGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDH 401
LGL+PL +++ + R C D C+ SV L V TD + VT KDL S D
Sbjct: 62 LGLVPLYTKKDLVFRDDCAC-----DDICDKCSVSLTLNVSNNTDMPMVVTCKDLKSQDD 116
Query: 402 TVV 410
V+
Sbjct: 117 VVI 119
[136][TOP]
>UniRef100_A6RAE4 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus
NAm1 RepID=A6RAE4_AJECN
Length = 576
Score = 104 bits (260), Expect = 3e-21
Identities = 62/142 (43%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Frame = +3
Query: 81 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA 260
F L D + AN+LRR +++E+PT+AID+VEIE N+SVL DEFI+HRLGLIPL S+ A
Sbjct: 50 FRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDA 109
Query: 261 -MRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTS 437
M +SRDCD G +C V L+ +C ++ + V ++DL V+ D + +
Sbjct: 110 DMEYSRDCDCEGGCARC---VVTLQLQARCTGEDIMKVYARDL------VIVGDRANEWV 160
Query: 438 SD----SAVNKGIIIVKLRRGQ 491
+ A KG +I KLRRGQ
Sbjct: 161 GNPVIMDAEGKGPVICKLRRGQ 182
[137][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
GT1 RepID=B9PNQ8_TOXGO
Length = 484
Score = 103 bits (256), Expect = 8e-21
Identities = 57/127 (44%), Positives = 81/127 (63%)
Frame = +3
Query: 18 GVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 197
G S A P + ++E+ + +F L + D SIAN LRRVMISEVP++AIDLV + N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203
Query: 198 NDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTS 377
+DE+I+HRLGL+P+ S R DCD +D +C SV++ L V C D L VT
Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCADHCSRC---SVQYALDVVCERDSLL-VTH 259
Query: 378 KDLYSSD 398
+D+ + +
Sbjct: 260 RDIVADN 266
[138][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
RepID=B6KGB1_TOXGO
Length = 484
Score = 103 bits (256), Expect = 8e-21
Identities = 57/127 (44%), Positives = 81/127 (63%)
Frame = +3
Query: 18 GVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 197
G S A P + ++E+ + +F L + D SIAN LRRVMISEVP++AIDLV + N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203
Query: 198 NDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTS 377
+DE+I+HRLGL+P+ S R DCD +D +C SV++ L V C D L VT
Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCADHCSRC---SVQYALDVVCERDSLL-VTH 259
Query: 378 KDLYSSD 398
+D+ + +
Sbjct: 260 RDIVADN 266
[139][TOP]
>UniRef100_B3L2P7 Dna-directed rna polymerase II, putative n=1 Tax=Plasmodium
knowlesi strain H RepID=B3L2P7_PLAKH
Length = 334
Score = 103 bits (256), Expect = 8e-21
Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Frame = +3
Query: 30 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 209
A+ V+I +L D F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF
Sbjct: 10 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 69
Query: 210 IAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLY 389
+AHRLGLIP+ S F C + +C ++++ ++VKC +DVT D+
Sbjct: 70 LAHRLGLIPIDSRNVKNFEFREKCKCKETCSKC---TIQYLIQVKCNNVSKIDVTHYDIE 126
Query: 390 SSDH---TVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
S +H +PV F D ++ A + I IV L + Q
Sbjct: 127 SVEHEPNVPMPVPFE-DRNNKMAQSNAIPIVTLSKNQ 162
[140][TOP]
>UniRef100_Q0UL31 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UL31_PHANO
Length = 335
Score = 102 bits (254), Expect = 1e-20
Identities = 60/149 (40%), Positives = 86/149 (57%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
V+ E A F +++ + AN+LRRVM++E+PT+AID+VE+ N+SVL DEF+ HRL
Sbjct: 12 VRFLEANSQRANFIVQNFNLETANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHRL 71
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GLIPL+S + ++RDCD +G C+ +V L KC E + V ++DL +
Sbjct: 72 GLIPLSSRGVDDLLYARDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVFARDLVIESNR 128
Query: 405 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
P D + G IVKLRRGQ
Sbjct: 129 --PNDEVGRPVITDSEGTGSCIVKLRRGQ 155
[141][TOP]
>UniRef100_A4R7L3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4R7L3_MAGGR
Length = 330
Score = 102 bits (254), Expect = 1e-20
Identities = 63/157 (40%), Positives = 90/157 (57%), Gaps = 8/157 (5%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
VKI FEL + D S+AN++RRVM++E+PT+AID EI+ N+SVL DEFIAHRL
Sbjct: 17 VKIFHADSVHVNFELSNVDLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRL 76
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDE---TLDVTSKDLYSS 395
GL+PL++ A + ++RDCD + CE SV + KC +++ + V ++D+
Sbjct: 77 GLVPLSARGASELVYARDCDC---EQYCENCSVIITIHAKCESEDPNYVMKVYARDMVVD 133
Query: 396 DHTV-----VPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
V PV PD G+I+ KLRR Q
Sbjct: 134 GRRVNQSVGTPVITDPD-------GLGVILFKLRRNQ 163
[142][TOP]
>UniRef100_B6QC30 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC30_PENMQ
Length = 370
Score = 102 bits (253), Expect = 2e-20
Identities = 63/144 (43%), Positives = 87/144 (60%), Gaps = 7/144 (4%)
Frame = +3
Query: 81 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 257
F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SVL DEF+AHRLGLIPL S+
Sbjct: 44 FKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDN 103
Query: 258 AMRFSRDCDASDGDGQCEFGSVEFHLRVKC-MTDETLDVTSKDLY-----SSDHTVVPVD 419
M ++RDC +C SV L +C D+ + V S+DL +++ PV
Sbjct: 104 DMEYNRDCTCESWCSRC---SVRLTLHARCNQADDVMKVYSRDLVVTGDRANEWVGNPVI 160
Query: 420 FSPDTSSDSAVNKGIIIVKLRRGQ 491
P+ KG +I KL +GQ
Sbjct: 161 TDPE-------GKGPLIAKLIKGQ 177
[143][TOP]
>UniRef100_B6GWS8 Pc12g07350 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GWS8_PENCW
Length = 335
Score = 102 bits (253), Expect = 2e-20
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P+V +RE + F L D + AN+LRR +++EVPT+A+DL+EIE N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71
Query: 219 RLGLIPLTSERA-MAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
RLG+IPL S + ++RDCD D +C SV L +C + + V ++DL
Sbjct: 72 RLGMIPLNSYNCDQDLDYTRDCDCEDHCVRC---SVTLSLHARCGSG-IMSVYARDLIVV 127
Query: 396 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ P T+ NKG +I KLR+GQ
Sbjct: 128 GERINDKIGDPVTTDPE--NKGPLICKLRKGQ 157
[144][TOP]
>UniRef100_Q5CJZ9 DNA-directed RNA polymerase I n=1 Tax=Cryptosporidium hominis
RepID=Q5CJZ9_CRYHO
Length = 344
Score = 100 bits (250), Expect = 4e-20
Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 7/156 (4%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
+K+ ELK D F++ DASIANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDE---TLDVTSKDLYSS 395
GLIP+ + + D D ++ + C F L VKC D+ +TSK +YS
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170
Query: 396 DHTVVPVDFSP----DTSSDSAVNKGIIIVKLRRGQ 491
D +P+ + S V I+I KLR GQ
Sbjct: 171 DLVWIPLSDNQRKKFGKSPPKVVTDDILITKLRPGQ 206
[145][TOP]
>UniRef100_Q8I2S6 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8I2S6_PLAF7
Length = 335
Score = 99.8 bits (247), Expect = 8e-20
Identities = 56/151 (37%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
++ I +L D F L ++++ IANALRR+M+SE+PT+AID+V + N+S +DEFIAHR
Sbjct: 12 QINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFIAHR 71
Query: 222 LGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDH 401
LGLIP+ S F C + +C ++++ + VKC +DV+ D+ S +H
Sbjct: 72 LGLIPIDSRNVNNYEFREKCKCKETCSKC---TIQYIIEVKCNHSNKIDVSHYDIESLEH 128
Query: 402 TV-VPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
VP+ P + +S I IV L + Q
Sbjct: 129 EPNVPMPI-PHGNKNSVSENAIPIVTLSKNQ 158
[146][TOP]
>UniRef100_Q5CPY6 RNA polymerase III C5 subunit n=1 Tax=Cryptosporidium parvum Iowa
II RepID=Q5CPY6_CRYPV
Length = 344
Score = 99.8 bits (247), Expect = 8e-20
Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 7/156 (4%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
+K+ ELK D F++ DASIANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDE---TLDVTSKDLYSS 395
GLIP+ + + D D ++ + C F L VKC D+ +TSK +YS
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170
Query: 396 DHTVVPVDFSP----DTSSDSAVNKGIIIVKLRRGQ 491
D +P+ + + V I+I KLR GQ
Sbjct: 171 DLVWIPLSDNQRKKFGKTPPKVVTDDILITKLRPGQ 206
[147][TOP]
>UniRef100_UPI000155CFD6 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C n=1 Tax=Ornithorhynchus anatinus
RepID=UPI000155CFD6
Length = 352
Score = 99.4 bits (246), Expect = 1e-19
Identities = 61/125 (48%), Positives = 82/125 (65%), Gaps = 3/125 (2%)
Frame = +3
Query: 126 RVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCDASDGDG 302
R I P ++ID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++SRDC +
Sbjct: 113 RSPIQAPPILSIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCP 172
Query: 303 QCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVK 476
+C SVEF L V+C D+T VTS+DL S+ V+PV S D + V + I+IVK
Sbjct: 173 EC---SVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRSRDNDPNDYVEQDDILIVK 229
Query: 477 LRRGQ 491
LR+GQ
Sbjct: 230 LRKGQ 234
[148][TOP]
>UniRef100_A5K6U4 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium vivax
RepID=A5K6U4_PLAVI
Length = 333
Score = 99.4 bits (246), Expect = 1e-19
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Frame = +3
Query: 30 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 209
A+ V+I +L D F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF
Sbjct: 9 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 68
Query: 210 IAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLY 389
+AHRLGLIP+ S F C + +C ++++ ++VKC +++T D+
Sbjct: 69 LAHRLGLIPIDSTNVKNFEFREKCKCKETCSKC---TIQYLIQVKCNNVSKIEITHHDIE 125
Query: 390 SSDH---TVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
S +H +PV D ++ A + I IV L + Q
Sbjct: 126 SVEHEPNVPMPVPLE-DRNNQMAESNAIPIVTLSKNQ 161
[149][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5LCN7_9ALVE
Length = 336
Score = 99.0 bits (245), Expect = 1e-19
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Frame = +3
Query: 36 MPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 215
MP +++ L D+ +F + + + +IANALRR+MI+EVPT+AID V IE NSS L DEF+A
Sbjct: 12 MPVIEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVA 71
Query: 216 HRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
HRLGL+P+ S+ + +DC C +V++ L V DVT D+
Sbjct: 72 HRLGLLPINSKEVDSYSDPKDCQCYSSCPNC---TVKYTLDVIAEDHGVTDVTHLDIQPV 128
Query: 396 DH-TVVPVDFSP------DTSSDSAVNK--GIIIVKLRRGQ 491
D T +P P D + N+ GI+I KLRR Q
Sbjct: 129 DQGTSIPESRRPLPVPLWDRTKTEEENRRNGIVIAKLRRNQ 169
[150][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
RepID=Q4UFZ3_THEAN
Length = 354
Score = 98.6 bits (244), Expect = 2e-19
Identities = 58/160 (36%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P +++ +L+ D F L ++D S ANA+RRV++SE+P++AI++V + N+SVL+DE+I+H
Sbjct: 10 PSIEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISH 69
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGL+P+ S A F C +D +C +V++ L V C + VT D+ D
Sbjct: 70 RLGLLPIDSTLASEFEFRDRCQCTDKCAKC---TVDYTLDVSCNDSNSRLVTHFDIVPDD 126
Query: 399 ---------HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ +P+ + T+ + A + GI IVKL+RGQ
Sbjct: 127 THSKSIYGKNLPMPIPRADVTNFNGATD-GIPIVKLKRGQ 165
[151][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N9T5_THEPA
Length = 354
Score = 98.6 bits (244), Expect = 2e-19
Identities = 58/159 (36%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P ++I +L+ D F L ++D S ANA+RRV++SE+P++AI++V + N+SVL+DE+I+H
Sbjct: 10 PSIEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISH 69
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGL+P+ S A F C +D +C +V++ L V C ++ VT D+ D
Sbjct: 70 RLGLLPIDSTLASEFEFRDRCQCTDKCAKC---TVDYTLDVSCKDSDSRVVTHFDIVPDD 126
Query: 399 ---------HTVVPVDFSPDTSSDSAVNKGIIIVKLRRG 488
+ +P+ + T+ + A + GI IVKL+RG
Sbjct: 127 THSKSIYGKNLPMPIPRADVTNFNGATD-GIPIVKLKRG 164
[152][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
Length = 351
Score = 98.2 bits (243), Expect = 2e-19
Identities = 62/156 (39%), Positives = 87/156 (55%), Gaps = 7/156 (4%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
+KI EL D F+L DA++ANALRR+++ EVPT+AI+ V+I NS V+ DE +AHRL
Sbjct: 66 IKINELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRL 125
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCM---TDETLDVTSKDLYSS 395
GLIP + + + D D ++ + C F L V+C D+ +TSK +YS
Sbjct: 126 GLIPFNIDLDLIDFRAEDQDLNEKNSVC------FKLCVECNKYDIDDKNGITSKAIYSK 179
Query: 396 DHTVVPVDFSP----DTSSDSAVNKGIIIVKLRRGQ 491
D VP+ S + S V I+I KLR GQ
Sbjct: 180 DLIWVPMSESQKQIFEKKPPSVVYPDILITKLRPGQ 215
[153][TOP]
>UniRef100_Q4Z7P9 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium berghei
RepID=Q4Z7P9_PLABE
Length = 331
Score = 97.8 bits (242), Expect = 3e-19
Identities = 52/153 (33%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
+++I+ + + F L +++A++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR
Sbjct: 10 KIEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 69
Query: 222 LGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDH 401
+GLIP+ S + F C + +C +V++ + VKC ++V+ D+ + DH
Sbjct: 70 IGLIPIDSRNIKSYEFRERCKCKETCSRC---TVQYIIEVKCNNANKINVSHYDIEALDH 126
Query: 402 TV-VPVDFSPDTSSDS--AVNKGIIIVKLRRGQ 491
+P+ D +++ + I IV L + Q
Sbjct: 127 EPNIPMPIPNDNKNNNIEKMENAIPIVTLSKNQ 159
[154][TOP]
>UniRef100_B3NAC7 GG23887 n=1 Tax=Drosophila erecta RepID=B3NAC7_DROER
Length = 117
Score = 97.8 bits (242), Expect = 3e-19
Identities = 47/85 (55%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRD 278
F+AHR+GLIPL S+ + ++++RD
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRD 87
[155][TOP]
>UniRef100_Q6IP84 MGC78824 protein n=1 Tax=Xenopus laevis RepID=Q6IP84_XENLA
Length = 347
Score = 97.4 bits (241), Expect = 4e-19
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W + + R+ I +++DD+ F++ DASIANA RR+++SEVPT+A++ V + N+S
Sbjct: 40 WNQGRFEKNFRIDIVKMEDDILEFDMVGIDASIANAFRRILLSEVPTVAVEKVYVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R A D +G E +++F L VKC +
Sbjct: 100 IIQDEILAHRLGLIPIRAD----PRLFEYRSADDAEG-TEIDTLQFELNVKCTRNPRASK 154
Query: 372 TSKD---------LYSSDHTVVP----VDFSPDTSSDSAVNKGIIIVKLRRGQ 491
D +Y+ +P VD P+T V+K I+I +LR GQ
Sbjct: 155 DCSDPNELYLNHKVYTGHMKWLPQGNQVDLFPETDPPRPVHKDILIAQLRPGQ 207
[156][TOP]
>UniRef100_Q8SRR5 DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN n=1 Tax=Encephalitozoon
cuniculi RepID=Q8SRR5_ENCCU
Length = 240
Score = 97.4 bits (241), Expect = 4e-19
Identities = 60/152 (39%), Positives = 85/152 (55%)
Frame = +3
Query: 36 MPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 215
M + + EL + RF L +T ANALRR++ISEVPTIAID+VEIE N++VL DE +A
Sbjct: 1 MVALTVEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLA 60
Query: 216 HRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSS 395
HRLGLIP+ S+R +++ +C S G C SV F + V D V+++D+
Sbjct: 61 HRLGLIPIYSKR--ELKYKEECSCS---GFCSECSVVFEIDVVHTDDTLRTVSTRDIVCD 115
Query: 396 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ V+ + G +I KL R Q
Sbjct: 116 EEDVI-------------IKSGPVITKLARDQ 134
[157][TOP]
>UniRef100_Q8IP63 RNA polymerase II 33kD subunit, isoform B n=1 Tax=Drosophila
melanogaster RepID=Q8IP63_DROME
Length = 117
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSE 248
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[158][TOP]
>UniRef100_B3MN19 GF19666 n=1 Tax=Drosophila ananassae RepID=B3MN19_DROAN
Length = 125
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 207 FIAHRLGLIPLTSE 248
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[159][TOP]
>UniRef100_A9BL73 Rpb3 n=1 Tax=Cryptophyta RepID=A9BL73_9CRYP
Length = 307
Score = 95.9 bits (237), Expect = 1e-18
Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 6/157 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P ++I L + ++ L++T+ SI N+LRRVMI+EVPT AIDL+ IE+NSSV++DEF++H
Sbjct: 4 PSLEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSH 63
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFG------SVEFHLRVKCMTDETLDVTSK 380
RLGL+PL S A R++R+CD +C F + +F + T+D
Sbjct: 64 RLGLLPLFSNFAHEFRYTRECDCEQYCSKCSFKFSLDIYAEKFPQSIFSTDLNTIDKKEN 123
Query: 381 DLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
Y + P+ +S + ++ K I+I KL GQ
Sbjct: 124 FFYQQ---INPIHYS--SLKETLDQKPILIGKLGIGQ 155
[160][TOP]
>UniRef100_Q7RLX3 Conjugation stage-specific protein, putative n=1 Tax=Plasmodium
yoelii yoelii RepID=Q7RLX3_PLAYO
Length = 335
Score = 95.5 bits (236), Expect = 2e-18
Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 3/152 (1%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
++I+ + + F L ++++++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR+
Sbjct: 15 IEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 74
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GLIP+ S F C + +C +V++ + VKC +DV+ D+ + DH
Sbjct: 75 GLIPIDSRNIKNYEFRERCKCKETCSRC---TVQYIIEVKCNNANKIDVSHYDIEALDHE 131
Query: 405 V-VPVDFSPDTSSDS--AVNKGIIIVKLRRGQ 491
+P+ D +++ + I I+ L + Q
Sbjct: 132 PNIPMPIPNDNKNNNIEKMENAIPILTLSKNQ 163
[161][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
RepID=CNJC_TETTH
Length = 310
Score = 95.5 bits (236), Expect = 2e-18
Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 8/158 (5%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
++ + L++ F L + D S+AN+LRR++++E+ TIAI V++ N+S L DE+IAHR
Sbjct: 5 KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHR 64
Query: 222 LGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL-YSSD 398
LGLIPL S + + +C+ G+C+ ++ F LRV T+E L+VTS DL D
Sbjct: 65 LGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQD 121
Query: 399 HT----VVPVDFSPDTSSDSAVNK---GIIIVKLRRGQ 491
HT V P+ D NK GI I+KL +GQ
Sbjct: 122 HTDEDAVRPIKVY-SILRDEYGNKREVGIPIIKLSKGQ 158
[162][TOP]
>UniRef100_Q4XR41 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
chabaudi RepID=Q4XR41_PLACH
Length = 331
Score = 95.1 bits (235), Expect = 2e-18
Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 3/152 (1%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
++I+ + + F L +++ ++ANALRR+M+SEVPT+A+D+V + N+S +DEFIAHR+
Sbjct: 11 IEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRI 70
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GLIP+ S + F C + +C +V++ + VKC +DV+ D+ + DH
Sbjct: 71 GLIPIDSRNIKSYEFRERCKCKETCSRC---TVQYIIEVKCNNANKIDVSHYDIEALDHE 127
Query: 405 V-VPVDFSPDTSSDS--AVNKGIIIVKLRRGQ 491
+P+ D ++ ++ I IV L + Q
Sbjct: 128 PNIPMPIPNDNKHNNIDKMDTAIPIVTLSKNQ 159
[163][TOP]
>UniRef100_UPI0000E242AB PREDICTED: similar to RNA polymerase II subunit hRPB33 isoform 2
n=1 Tax=Pan troglodytes RepID=UPI0000E242AB
Length = 242
Score = 94.7 bits (234), Expect = 3e-18
Identities = 56/116 (48%), Positives = 76/116 (65%), Gaps = 3/116 (2%)
Frame = +3
Query: 153 IAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEF 329
+AID V+I+ NSSVL+DEFIAHRLGLIPL S+ + +++SRDC + +C SVEF
Sbjct: 12 LAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPEC---SVEF 68
Query: 330 HLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQ 491
L V+C D+T VTS+DL S+ V+PV + +D I+IVKLR+GQ
Sbjct: 69 TLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQ 124
[164][TOP]
>UniRef100_A4HH22 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
braziliensis RepID=A4HH22_LEIBR
Length = 337
Score = 94.4 bits (233), Expect = 4e-18
Identities = 57/137 (41%), Positives = 80/137 (58%)
Frame = +3
Query: 81 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA 260
F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A
Sbjct: 21 FQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKR 80
Query: 261 MRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSS 440
+ F +DC G C + L+V+C ++ SK ++ D + S +
Sbjct: 81 LNFPQDCGC--GGSGCPDCQITGSLKVQCPPNQ----HSKQVFIGDSLQID---SAEVYP 131
Query: 441 DSAVNKGIIIVKLRRGQ 491
SA GI +V L R Q
Sbjct: 132 VSAEEHGIWLVTLGRSQ 148
[165][TOP]
>UniRef100_C9SI18 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Verticillium albo-atrum VaMs.102 RepID=C9SI18_9PEZI
Length = 375
Score = 94.0 bits (232), Expect = 5e-18
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Frame = +3
Query: 6 N*WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 185
N W ++ RV+ +L + F L DASIANALRR++ISE+PT+AI+ V I N
Sbjct: 42 NSWSLDTFRENFRVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYIYNN 101
Query: 186 SSVLNDEFIAHRLGLIPLTSERAMAMRFSR----DCDASDGDGQCEFGSVEFHLRVKCM- 350
+SV+ DE +AHRLGL+P T+ +A F R + D + GD ++ +V+ LR++C
Sbjct: 102 TSVIQDEVLAHRLGLVPFTANKAGLRDFLRWRKKNPDGTPGD-IFDYNTVQLRLRIECTR 160
Query: 351 --------TDETLDVTSKDLYSSDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQ 491
D T + +++SD VP F ++ N I++ KLR GQ
Sbjct: 161 NPDAAPGEIDSTKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNPDILLAKLRPGQ 220
[166][TOP]
>UniRef100_UPI000180C3EB PREDICTED: similar to RNA polymerase 1-1 n=1 Tax=Ciona intestinalis
RepID=UPI000180C3EB
Length = 345
Score = 93.2 bits (230), Expect = 8e-18
Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 9/168 (5%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ +A + + EL D +F++ DA+IANA RR++I+EVPT+AI+ V I N++
Sbjct: 37 WDFQKFADNFCINVIELGPDSMQFDMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNNTT 96
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTD----- 356
V+ DE +AHRLGLIPLT++ + D D DG E ++EF L +KC +
Sbjct: 97 VIQDEVLAHRLGLIPLTADAKLFEYRQGD----DADGTPE-DTLEFELNIKCTKNLSAPK 151
Query: 357 --ETLDVTSK--DLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRG 488
LDV K +YS D +P+ D + V I++ KLR G
Sbjct: 152 DTTDLDVLYKHHKVYSKDIKWIPLGNQKDLLTVKPVYDDILVAKLRPG 199
[167][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
strain Friedlin RepID=Q4FY45_LEIMA
Length = 337
Score = 93.2 bits (230), Expect = 8e-18
Identities = 58/149 (38%), Positives = 82/149 (55%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
VK + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRL
Sbjct: 9 VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GL+PL SE+A + F +DC G C + L+V+C ++ SK ++ D
Sbjct: 69 GLVPLFSEKAKRLNFPQDCGC--GGSGCPDCQITGSLKVQCPPNQ----HSKQVFIGDSL 122
Query: 405 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ + SA GI +V L R Q
Sbjct: 123 QID---DAEVYPVSAEEHGIWLVTLGRSQ 148
[168][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
infantum RepID=A4I451_LEIIN
Length = 337
Score = 93.2 bits (230), Expect = 8e-18
Identities = 58/149 (38%), Positives = 82/149 (55%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
VK + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRL
Sbjct: 9 VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GL+PL SE+A + F +DC G C + L+V+C ++ SK ++ D
Sbjct: 69 GLVPLFSEKAKRLNFPQDCGC--GGSGCPDCQITGSLKVQCPPNQ----HSKQVFIGDSL 122
Query: 405 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ + SA GI +V L R Q
Sbjct: 123 QID---DAEVYPVSAEEHGIWLVTLGRSQ 148
[169][TOP]
>UniRef100_Q7SHT0 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Neurospora crassa RepID=Q7SHT0_NEUCR
Length = 378
Score = 92.4 bits (228), Expect = 1e-17
Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + RV + A+F L DASIANA RR+MI+++PT+AI+ + + N+S
Sbjct: 54 WDIEKFRESVRVVFHQNDPYEAQFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTS 113
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
V+ DE + HRLGLIP T + F + G+ C++ +VE L+VKC +E+
Sbjct: 114 VIQDEVLGHRLGLIPFTGGKEGLHNFLK--WYKKGETPCDYNTVELELKVKCENNESAPA 171
Query: 372 TSKD---LYSSDHTVV-PVDFSPD------TSSDSAV---NKGIIIVKLRRGQ 491
SKD LY + H + F P S ++A+ N I++ K+R GQ
Sbjct: 172 DSKDPKELYHNAHVYAKDIKFVPKGRQAKYFSGENAIRPTNPDILVAKMRPGQ 224
[170][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
RepID=A7AWB4_BABBO
Length = 382
Score = 91.3 bits (225), Expect = 3e-17
Identities = 50/116 (43%), Positives = 73/116 (62%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P + I L F L + D + AN+LRR+M+SE+P++AI++V + N+SVL+DE+IAH
Sbjct: 10 PSIDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTSVLHDEYIAH 69
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL 386
RLGL+P+ S A + C SD +C +VE+ L VKCM D+T VT D+
Sbjct: 70 RLGLLPIESSSARNFEYRDKCTCSDKCSRC---TVEYSLDVKCM-DDTRVVTHYDI 121
[171][TOP]
>UniRef100_UPI0000EDC949 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Ornithorhynchus anatinus RepID=UPI0000EDC949
Length = 346
Score = 90.5 bits (223), Expect = 5e-17
Identities = 56/172 (32%), Positives = 97/172 (56%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + ++++D F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQSRFEQGFRVDVVQMEEDSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+T++ R + D +G E +++F L+VKC + +
Sbjct: 100 IMQDEVLAHRLGLIPITAD----PRLFEYRNQGDEEG-TEIDTLQFQLKVKCTWNPSAAK 154
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +Y+ T VP+ D + A V+ I+I +LR GQ
Sbjct: 155 DSSDPNQLYLNHKVYTKHMTWVPLGNQADLFPEGAIRPVHDDILITQLRPGQ 206
[172][TOP]
>UniRef100_A4R0T4 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4R0T4_MAGGR
Length = 373
Score = 90.5 bits (223), Expect = 5e-17
Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ +++ ++ + +A F L DASIANA RR+MI+E+P++AI+ V I N+S
Sbjct: 44 WDVNEFSQHLNIQFHQNDPSLASFSLIGVDASIANAFRRIMIAEIPSLAIERVFITNNTS 103
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRD---CDASDGDGQCEFGSVEFHLRVKCM---- 350
V+ DE +A RLGL+PL + +F + + D +F +V L VKC
Sbjct: 104 VIQDEVLAQRLGLVPLKGSKEGLRKFMKPFKRTETGGFDNSFDFNTVNLRLNVKCTRNPD 163
Query: 351 -----TDETLDVTSKDLYSSDHTVVPVDFSPD-TSSDSA---VNKGIIIVKLRRGQ 491
D ++Y+SD VP D S D A VN I+I KLR GQ
Sbjct: 164 AKPGENDPNKAYIKPNVYASDIEFVPAGQQTDYFSGDGAIVPVNPDILIAKLRPGQ 219
[173][TOP]
>UniRef100_C1BKA8 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BKA8_OSMMO
Length = 351
Score = 89.7 bits (221), Expect = 9e-17
Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W + + R+ I E+ + F++ DA+IANA RR+M++EVPT+A++ V I N+S
Sbjct: 41 WNMQKFQKNFRIDIVEMDETTMEFDMVGIDAAIANAFRRIMLAEVPTMAVEKVYIYNNTS 100
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ + + + + +G E +++ L++KC +
Sbjct: 101 IIQDEILAHRLGLIPIKADPRLFEYRNIGEEGGEEEG-TEIDTIQLQLKIKCTRNPRAPK 159
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQ 491
S D +YS D VP+ D +D+ V+ I+I +LR GQ
Sbjct: 160 DSSDPRELYLNHMVYSKDMKWVPIGNQADVFADANIGPVHGDILIAQLRPGQ 211
[174][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
Length = 308
Score = 89.7 bits (221), Expect = 9e-17
Identities = 54/115 (46%), Positives = 73/115 (63%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
R++I EL D+ +F + D SIANA+RRVMI+EVP +AI V+I N+S L+DEF+A R
Sbjct: 13 RIEILELSDEKCKFSF-EGDLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 222 LGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL 386
LGLIPL S A + + + DA D Q V F LR K + D L++TS+ L
Sbjct: 72 LGLIPLVSYAADSKMYDWEADADSIDDQKT--KVVFTLRQKNLNDAPLEITSQHL 124
[175][TOP]
>UniRef100_Q6C4T2 YALI0E23947p n=1 Tax=Yarrowia lipolytica RepID=Q6C4T2_YARLI
Length = 339
Score = 89.4 bits (220), Expect = 1e-16
Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 9/169 (5%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + +VKI L D+ + F+L D S+ANA RR+MI+++PTIA++ V I N+S
Sbjct: 36 WDLDKFDKNLQVKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFIHANTS 95
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGL+PL R DAS+ + + S F LR+ + D
Sbjct: 96 IIQDEVLAHRLGLVPLVINPERINALPRGLDASEIEDYYD-DSNTFVLRLNVTCERLADG 154
Query: 372 TSKD--LYSSDHTVVPVDFSPDTSSDSAV-------NKGIIIVKLRRGQ 491
T K+ +Y+ D T P+ D + N I+I KLR Q
Sbjct: 155 TMKNAHIYARDITFDPMGNQCQWVKDEGLENVFKVANPDILIAKLRPNQ 203
[176][TOP]
>UniRef100_C1BYW4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Esox
lucius RepID=C1BYW4_ESOLU
Length = 263
Score = 88.6 bits (218), Expect = 2e-16
Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W + + R+ + ++ + F++ DASIANA RR++++EVPT+A++ V I N+S
Sbjct: 41 WSLQKFQKNFRIDVVQMDETCMEFDMVGIDASIANAFRRILLAEVPTMAVEKVFIYNNTS 100
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +A RLGLIP+ ++ R +A D +G E +++ L++KC +
Sbjct: 101 IIQDEVLAQRLGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNHQATK 155
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQ 491
S D +YS D T VP+ D +D+ V+ I++ KLR GQ
Sbjct: 156 DSADPQELYLNHMVYSKDMTWVPIGNQADVVADANIGPVHGDILLAKLRPGQ 207
[177][TOP]
>UniRef100_O08521 Homologous to 40kD subunit of RNA-polymerase I and III (Fragment)
n=1 Tax=Cricetulus griseus RepID=O08521_CRIGR
Length = 347
Score = 88.6 bits (218), Expect = 2e-16
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Frame = +3
Query: 6 N*WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 185
N W+ + + +V I L + FE+ DASIANA RR++I+E+PT+A + V I N
Sbjct: 34 NIWDLDKFKKNLKVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINN 93
Query: 186 SSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETL 365
+S++ DE ++HR+GL+P++++ M F + ++ +V F L KC ++
Sbjct: 94 TSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNA 152
Query: 366 DVTSKD---------LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQ 491
KD +YS D P + +D+ VN I++ KLR GQ
Sbjct: 153 ATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQ 206
[178][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
Length = 363
Score = 88.6 bits (218), Expect = 2e-16
Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Frame = +3
Query: 42 RVKIRELKD------DMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 203
+VKI + K + F+L + D S AN LRRVM++EVP + I+ V I N+SVL D
Sbjct: 28 KVKILDCKKHEHSAGETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPD 87
Query: 204 EFIAHRLGLIPLTSERAMAMRFSRDC-DASDGDGQCEFGSVEFHLRVKCMTDE-TLDVTS 377
E IAHR+GL+PL S +A M+++RDC G G+C+ + L+V C +++ +L V
Sbjct: 88 EMIAHRIGLVPLYSMKARRMQYARDCLCGGSGCGECQ---INGELKVSCPSNKHSLQVFM 144
Query: 378 KDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
L D V PV S+ G+ ++ L R Q
Sbjct: 145 DSLKIDDEEVYPV---------SSEEHGVWLLTLGRSQ 173
[179][TOP]
>UniRef100_C0SF50 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SF50_PARBP
Length = 345
Score = 88.6 bits (218), Expect = 2e-16
Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 19/158 (12%)
Frame = +3
Query: 75 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 248
A F L DASIANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 29 ASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 88
Query: 249 RAMAMRFSR---DCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD---------LYS 392
+R+ R + D S G ++ ++ HL VKC + +D +Y+
Sbjct: 89 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVKCKKNPKASPDEQDPLKLYSHAHVYA 148
Query: 393 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQ 491
D T PV F N I++ KLR GQ
Sbjct: 149 KDITFQPVGRQEAYFPEPDGGIRPTNPDILLAKLRPGQ 186
[180][TOP]
>UniRef100_B2A971 Predicted CDS Pa_1_8610 n=1 Tax=Podospora anserina
RepID=B2A971_PODAN
Length = 372
Score = 88.6 bits (218), Expect = 2e-16
Identities = 64/176 (36%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + R V+ + A F L DASIANA RR+MI++VPT+AI+ V + N+S
Sbjct: 43 WDIERFKRGFSVEFHQNDPHEASFSLIGIDASIANAFRRIMIADVPTLAIENVFVWNNTS 102
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSR--DCDASDGDGQC-EFGSVEFHLRVKCMTDET 362
V+ DE +AHRLGLIP T R F + A+ +C +F +V L VKC +E
Sbjct: 103 VIQDEVLAHRLGLIPFTGGREGLTDFLKWYRKPANGDPAECKDFNTVALELNVKCEHNEN 162
Query: 363 LDVTSKD---------LYSSDHTVVP----VDFSPDTSSDSAVNKGIIIVKLRRGQ 491
D D +Y+ D P VD+ VN I+I KLR GQ
Sbjct: 163 ADPNETDPTKLYHHAHVYAKDIVFKPIGRQVDYFSGEDIIRPVNPDILIAKLRPGQ 218
[181][TOP]
>UniRef100_O94616 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAC1_SCHPO
Length = 348
Score = 88.6 bits (218), Expect = 2e-16
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Frame = +3
Query: 6 N*WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 185
N W+ + + +V I L + FE+ DASIANA RR++I+E+PT+A + V I N
Sbjct: 35 NIWDLDKFKKNLKVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINN 94
Query: 186 SSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETL 365
+S++ DE ++HR+GL+P++++ M F + ++ +V F L KC ++
Sbjct: 95 TSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNA 153
Query: 366 DVTSKD---------LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQ 491
KD +YS D P + +D+ VN I++ KLR GQ
Sbjct: 154 ATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQ 207
[182][TOP]
>UniRef100_Q9AW23 DNA-directed RNA polymerase II n=1 Tax=Guillardia theta
RepID=Q9AW23_GUITH
Length = 299
Score = 88.2 bits (217), Expect = 3e-16
Identities = 56/151 (37%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
+K+ ++ D + + AN++RR+M++E+PT+AID V IE N+S DEFIAHRL
Sbjct: 1 MKVEKISDFEIKINFNNFPIVYANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRL 60
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GLIP+ SE A +++SR+CD + +CE S+ F L V E +S S+
Sbjct: 61 GLIPIFSENADLIKYSRECDC---ENECEKCSILFTLDVHANETEKTITSSMVKCSTACY 117
Query: 405 VVPVDFSPDTSSDSA--VNKGIIIVKLRRGQ 491
+ F + S +S + III KL GQ
Sbjct: 118 PLKTFFIINNSGNSRNYDDYAIIIAKLNPGQ 148
[183][TOP]
>UniRef100_C1GK69 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GK69_PARBD
Length = 380
Score = 88.2 bits (217), Expect = 3e-16
Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 19/158 (12%)
Frame = +3
Query: 75 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 248
A F L DASIANA RR++ISE+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 64 ASFSLIGVDASIANAFRRILISEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 123
Query: 249 RAMAMRFSR---DCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD---------LYS 392
+R+ R + D S G ++ ++ HL V+C + +D +Y+
Sbjct: 124 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPDEQDPLKLYSHAHVYA 183
Query: 393 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQ 491
D T PV F N I++ KLR GQ
Sbjct: 184 KDITFQPVGRQEAYFPEPDGGIRPTNPDILLAKLRPGQ 221
[184][TOP]
>UniRef100_UPI00016E11AB UPI00016E11AB related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AB
Length = 347
Score = 87.8 bits (216), Expect = 3e-16
Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + ++ + L + F++ DA+I NA RR++++EVPT+AI+ V I N+S
Sbjct: 37 WDMAKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTS 96
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLD 368
++ DE +AHRLGLIP+ ++ R R S D +A++ +G E +++ L++ C +
Sbjct: 97 IVQDEVLAHRLGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASS 154
Query: 369 VTSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +YS D VP+ D ++ + V+ I+I +LR GQ
Sbjct: 155 KDSSDPRELYLNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQ 207
[185][TOP]
>UniRef100_UPI00016E11AA UPI00016E11AA related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AA
Length = 351
Score = 87.8 bits (216), Expect = 3e-16
Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + ++ + L + F++ DA+I NA RR++++EVPT+AI+ V I N+S
Sbjct: 41 WDMAKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTS 100
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLD 368
++ DE +AHRLGLIP+ ++ R R S D +A++ +G E +++ L++ C +
Sbjct: 101 IVQDEVLAHRLGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASS 158
Query: 369 VTSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +YS D VP+ D ++ + V+ I+I +LR GQ
Sbjct: 159 KDSSDPRELYLNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQ 211
[186][TOP]
>UniRef100_B3S4F3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S4F3_TRIAD
Length = 349
Score = 87.8 bits (216), Expect = 3e-16
Identities = 58/172 (33%), Positives = 97/172 (56%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W S+ + +++I ++ ++ F++ DASIANA RR+M+SEVP +AI+ V I N+S
Sbjct: 38 WSLNSFRKNFKIEIIKVDNEEMEFDMIGIDASIANAYRRIMLSEVPAMAIEKVVIHNNTS 97
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETL-- 365
++ DE +AHRLGLIP+ ++ + F + GD S+ F L++KC+ + +
Sbjct: 98 IIQDEVLAHRLGLIPIAADPKLFDNF------NPGDTPTNKNSITFTLQIKCIRNRSAHS 151
Query: 366 DVTS-KDLY-SSDHTVVPVDFSPDTSSDSA--------VNKGIIIVKLRRGQ 491
D T ++LY +S T + + D+A V++ I+I KLR GQ
Sbjct: 152 DATDPEELYINSKVTTKDLKLKYNEDQDNAIPNKDIRPVHEDILIAKLRPGQ 203
[187][TOP]
>UniRef100_B6JXY4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6JXY4_SCHJY
Length = 349
Score = 87.8 bits (216), Expect = 3e-16
Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Frame = +3
Query: 6 N*WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 185
N W + + +KI L D F++ DASI NA RR++I+E+PT+AI+ V I N
Sbjct: 35 NSWNLEEFKKKLNIKITSLDDLNMTFDISGIDASIVNAFRRILIAEIPTLAIEFVYIINN 94
Query: 186 SSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKC------ 347
+S+L DE ++HRLGLIPL ++ M F R + ++ +V F L VKC
Sbjct: 95 TSILQDEVLSHRLGLIPLKADPDMFKWFVRPGPGMEAT-HTDYDTVVFSLNVKCDFNKEA 153
Query: 348 ---MTDETLDVTSKDLYSSDHTVVPVDFSPDTSSD---SAVNKGIIIVKLRRGQ 491
TD + ++ S + P + +D + VN I++ KLR GQ
Sbjct: 154 APGETDPKKLYLNSEVLSGELVWKPQGRQAERFADNPLTVVNPNIVVAKLRPGQ 207
[188][TOP]
>UniRef100_UPI00004DA7E9 DNA-directed RNA polymerases I and III subunit RPAC1 (RNA
polymerases I and III subunit AC1) (DNA-directed RNA
polymerase I subunit C) (DNA- directed RNA polymerases I
and III 40 kDa polypeptide) (RPA40) (RPA39) (RPC40)
(AC40). n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI00004DA7E9
Length = 347
Score = 87.0 bits (214), Expect = 6e-16
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 13/163 (7%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
R+ I +++ D F++ DASIANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RIDIVKMEGDTLEFDMVGIDASIANAFRRILLAEVPTMAVEKVYVYNNTSIIQDEILAHR 109
Query: 222 LGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD------ 383
LGLIP+ + R A +G+G E +++F L VKC + D
Sbjct: 110 LGLIPIRVD----PRLFEYRSAEEGEG-TEIDTLQFELNVKCTRNPRASKDCSDPNELYL 164
Query: 384 ---LYSSDHTVVP----VDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+Y+S +P D P+T V+ I+I +LR GQ
Sbjct: 165 NHKVYTSHMKWLPQGNQSDLFPETDPPRPVHGDILIAQLRPGQ 207
[189][TOP]
>UniRef100_C8TDY9 Rna polymerase ii b3 subunit n=1 Tax=Eimeria tenella
RepID=C8TDY9_EIMTE
Length = 147
Score = 87.0 bits (214), Expect = 6e-16
Identities = 42/67 (62%), Positives = 55/67 (82%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
+++ EL + + RF L + DASIANALRRVMISEVPT+AIDLV + N+SVL+DE+I HRL
Sbjct: 44 IRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHRL 103
Query: 225 GLIPLTS 245
GL+P+ S
Sbjct: 104 GLLPIDS 110
[190][TOP]
>UniRef100_A6R4R6 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Ajellomyces capsulatus NAm1 RepID=A6R4R6_AJECN
Length = 380
Score = 86.7 bits (213), Expect = 7e-16
Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W + R +V + + A F L DA+IANA RR+MI+E+P++AI+ V I N+S
Sbjct: 43 WSIDEFKRNLKVTFHKNEPYEASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTS 102
Query: 192 VLNDEFIAHRLGLIPLT--SERAMAMRFSR---DCDASDGDGQCEFGSVEFHLRVKCMTD 356
V+ DE +AHRLGL+PLT SE +R+ R + G ++ +V HL V+C +
Sbjct: 103 VIQDEVLAHRLGLVPLTGSSEGINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNN 162
Query: 357 ETLDVTSKD---------LYSSDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQ 491
D +Y+ D T PV F + N I++ KLR GQ
Sbjct: 163 PKASANEDDPQKRYNHAHVYAKDITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQ 221
[191][TOP]
>UniRef100_UPI0000F2C148 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Monodelphis domestica RepID=UPI0000F2C148
Length = 346
Score = 86.3 bits (212), Expect = 1e-15
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + R RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQSRFEREFRVDVVHMDENSLEFDMIGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R + D DG E +++F L+VKC +
Sbjct: 100 IVQDEILAHRLGLIPIRAD----PRLFEYRNQGDEDG-TEIDTLQFQLKVKCTRNPQAAK 154
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +Y+ T +P+ D + V+ I+I +LR GQ
Sbjct: 155 DSSDPNELYLNHKVYTKHMTWIPLGNQADVFPEGTIRPVHDDILIAQLRPGQ 206
[192][TOP]
>UniRef100_UPI00005A0224 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0224
Length = 72
Score = 86.3 bits (212), Expect = 1e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGL 230
FIAHRLGL
Sbjct: 63 FIAHRLGL 70
[193][TOP]
>UniRef100_Q6DRM8 RNA polymerase I 140 kDa subunit n=1 Tax=Danio rerio
RepID=Q6DRM8_DANRE
Length = 343
Score = 86.3 bits (212), Expect = 1e-15
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + R++I ++ F++ DA+IANA RR++++EVPT+AI+ V I N+S
Sbjct: 37 WDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTS 96
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLD 368
++ DE +AHRLGL+P+ ++ R R S D + + E +++ L+VKC +
Sbjct: 97 IIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGT------EIDTIQLQLKVKCTRNPRAP 150
Query: 369 VTSKD---------LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQ 491
S D +YS D +P+ D +D+ V+ I++ ++R GQ
Sbjct: 151 KDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQ 203
[194][TOP]
>UniRef100_A2ATX1 Polymerase (RNA) I polypeptide C n=2 Tax=Danio rerio
RepID=A2ATX1_DANRE
Length = 362
Score = 86.3 bits (212), Expect = 1e-15
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + R++I ++ F++ DA+IANA RR++++EVPT+AI+ V I N+S
Sbjct: 56 WDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTS 115
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLD 368
++ DE +AHRLGL+P+ ++ R R S D + + E +++ L+VKC +
Sbjct: 116 IIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGT------EIDTIQLQLKVKCTRNPRAP 169
Query: 369 VTSKD---------LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQ 491
S D +YS D +P+ D +D+ V+ I++ ++R GQ
Sbjct: 170 KDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQ 222
[195][TOP]
>UniRef100_C1H4P1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H4P1_PARBA
Length = 380
Score = 86.3 bits (212), Expect = 1e-15
Identities = 57/158 (36%), Positives = 81/158 (51%), Gaps = 19/158 (12%)
Frame = +3
Query: 75 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 248
A F L DASIANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 64 ASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 123
Query: 249 RAMAMRFSR---DCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD---------LYS 392
+R+ R + D S G ++ ++ HL V+C + D +Y+
Sbjct: 124 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPNELDPLKLYSHAHVYA 183
Query: 393 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQ 491
D T PV F N I++ KLR GQ
Sbjct: 184 KDITFQPVGRQEAYFPEPDGGIRPTNPDILLAKLRPGQ 221
[196][TOP]
>UniRef100_C0NBQ0 DNA-directed RNA polymerase I and III polypeptide n=1
Tax=Ajellomyces capsulatus G186AR RepID=C0NBQ0_AJECG
Length = 380
Score = 86.3 bits (212), Expect = 1e-15
Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W + R ++ + + A F L DA+IANA RR+MI+E+P++AI+ V I N+S
Sbjct: 43 WSIDEFKRNLKITFHKNEPYEASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTS 102
Query: 192 VLNDEFIAHRLGLIPLT--SERAMAMRFSR---DCDASDGDGQCEFGSVEFHLRVKCMTD 356
V+ DE +AHRLGL+PLT SE +R+ R + G ++ +V HL V+C +
Sbjct: 103 VIQDEVLAHRLGLVPLTGSSEGINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNN 162
Query: 357 ETLDVTSKD---------LYSSDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQ 491
D +Y+ D T PV F + N I++ KLR GQ
Sbjct: 163 PKASANEDDPQKRYNHAHVYAKDITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQ 221
[197][TOP]
>UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2
Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG
Length = 337
Score = 85.9 bits (211), Expect = 1e-15
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Frame = +3
Query: 81 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA 260
F+L + D S AN LRRV+++EVP + ++ V I N+SVL DE IAHR+GL+PL S+RA
Sbjct: 21 FKLNEVDNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLYSKRAKQ 80
Query: 261 MRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDE-TLDVTSKDLYSSDHTVVPVDFSPDTS 437
M+F DC G C + L+V+C +++ +L V + L D V PV
Sbjct: 81 MQFFHDCLC--GGTGCIECQITGELKVRCPSNQHSLQVFADSLKIDDEGVYPV------- 131
Query: 438 SDSAVNKGIIIVKLRRGQ 491
S+ +G+ ++ L R Q
Sbjct: 132 --SSEERGVWLLTLGRSQ 147
[198][TOP]
>UniRef100_B5X7Z3 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Salmo
salar RepID=B5X7Z3_SALSA
Length = 353
Score = 85.1 bits (209), Expect = 2e-15
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W + + R+ + ++ + F++ DA+IANA RR++++EVPT+A++ V I N+S
Sbjct: 47 WNLQKFQKNFRIDVVQMDETSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLIYNNTS 106
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R +A D +G E +++ L++KC +
Sbjct: 107 IIQDEILAHRLGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNPRATK 161
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQ 491
S D +YS D P+ D +D+ V+ I++ +LR GQ
Sbjct: 162 DSADPRELYLNHMVYSKDMKWAPIGNQADVFADANIGPVHGDILLAQLRPGQ 213
[199][TOP]
>UniRef100_Q5KG24 RNA polymerase II subunit 3, putative n=1 Tax=Filobasidiella
neoformans RepID=Q5KG24_CRYNE
Length = 377
Score = 85.1 bits (209), Expect = 2e-15
Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
PR+ +R L + A F L + + AN+LRRVM+++VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 219 RLGLIPLTSER-AMAMRFSRDCDASDGDGQCEFGSVEFHLRV 341
RLGLIPL S + +R++RDCD +G C + V L+V
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKV 123
[200][TOP]
>UniRef100_Q55RL9 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q55RL9_CRYNE
Length = 377
Score = 85.1 bits (209), Expect = 2e-15
Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
PR+ +R L + A F L + + AN+LRRVM+++VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 219 RLGLIPLTSER-AMAMRFSRDCDASDGDGQCEFGSVEFHLRV 341
RLGLIPL S + +R++RDCD +G C + V L+V
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKV 123
[201][TOP]
>UniRef100_C6HA00 DNA-directed RNA polymerase I and III n=1 Tax=Ajellomyces
capsulatus H143 RepID=C6HA00_AJECH
Length = 380
Score = 85.1 bits (209), Expect = 2e-15
Identities = 57/158 (36%), Positives = 81/158 (51%), Gaps = 19/158 (12%)
Frame = +3
Query: 75 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SE 248
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSE 123
Query: 249 RAMAMRFSR---DCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD---------LYS 392
+R+ R + G ++ +V HL V+C + D +Y+
Sbjct: 124 GINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYA 183
Query: 393 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQ 491
D T PV F + N I++ KLR GQ
Sbjct: 184 KDITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQ 221
[202][TOP]
>UniRef100_B6GYD0 Pc12g12250 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GYD0_PENCW
Length = 374
Score = 85.1 bits (209), Expect = 2e-15
Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 18/157 (11%)
Frame = +3
Query: 75 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 248
A F L DA++ANA RR++++E+PTIAI+ I N+SV+ DE +A RLGLIPL + E
Sbjct: 64 ASFSLIGLDAAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLASRLGLIPLKGSIE 123
Query: 249 RAMAMRFSRDCD---ASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD---------LYS 392
M + + + + DG C+F ++ HL V+C +E D +D +Y+
Sbjct: 124 GINWMHWFKKASEDGSEEEDGPCDFNTIVLHLDVECYKNEYADKDEQDPRKLYTNAHVYA 183
Query: 393 SDHTVVPV----DFSPDTSSDSAVNKGIIIVKLRRGQ 491
D +PV + + + VN I+I KLR GQ
Sbjct: 184 KDLMYMPVGRQEQYFVGDGAIAPVNPDILIAKLRPGQ 220
[203][TOP]
>UniRef100_UPI000194C203 PREDICTED: polymerase (RNA) I polypeptide C, 30kDa n=1
Tax=Taeniopygia guttata RepID=UPI000194C203
Length = 346
Score = 84.7 bits (208), Expect = 3e-15
Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + RV + ++D F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQRRFEEAFRVDVIREEEDALEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R + D +G E +++F L++KC +
Sbjct: 100 IVQDEILAHRLGLIPIRAD----PRLFEYRNQGDQEG-TEIDTLQFQLKIKCKRNPQAAK 154
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQ 491
S D +YS T VP+ D D+ V+ I+I LR GQ
Sbjct: 155 ESSDPDELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDDILIALLRPGQ 206
[204][TOP]
>UniRef100_UPI0000E468FB PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E468FB
Length = 335
Score = 84.7 bits (208), Expect = 3e-15
Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 13/163 (7%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
R+ + L F++ D ++ANA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 35 RIDVISLTHSELEFDMVGVDPAVANAFRRILLAEVPTMAIEKVSIFNNTSIIQDEILAHR 94
Query: 222 LGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCM--TDETLDVTSKD-LY 389
LGLIP+ ++ R R D G G+ ++EF L+VKC + + D T D LY
Sbjct: 95 LGLIPIKADPRIFEYREEGD---ETGTGE---DTIEFQLKVKCTKNPNASKDATDPDELY 148
Query: 390 SSDHTV------VPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
+ +P++ +T A VNK I+I KLR GQ
Sbjct: 149 KNAKVTTEHFKWIPLENQEETYGPKAFAPVNKDILIAKLRPGQ 191
[205][TOP]
>UniRef100_UPI00003ACD10 PREDICTED: similar to RNA polymerase I subunit hRPA39 isoform 2 n=1
Tax=Gallus gallus RepID=UPI00003ACD10
Length = 346
Score = 84.3 bits (207), Expect = 4e-15
Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + RV + +D + F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQRRFEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R + D +G E +++F L++KC +
Sbjct: 100 IVQDEILAHRLGLIPIRAD----PRLFEYRNQGDEEG-TEIDTLQFQLKIKCSRNPQAAK 154
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQ 491
S D +YS T VP+ D D+ V+ I+I LR GQ
Sbjct: 155 ESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDDILIALLRPGQ 206
[206][TOP]
>UniRef100_Q32L22 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Bos
taurus RepID=RPAC1_BOVIN
Length = 346
Score = 84.0 bits (206), Expect = 5e-15
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLD 368
++ DE +AHRLGLIP+ ++ R R D +G E +++F L+V+C +
Sbjct: 100 IVQDEILAHRLGLIPIHADPRLFEYRNQGD------EGGTEIDTLQFRLQVRCTRNPHAA 153
Query: 369 VTSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +Y+ T VP+ D + A V+ I+I +LR GQ
Sbjct: 154 KDSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQ 206
[207][TOP]
>UniRef100_UPI000175846B PREDICTED: similar to CG3756 CG3756-PA n=1 Tax=Tribolium castaneum
RepID=UPI000175846B
Length = 338
Score = 83.6 bits (205), Expect = 6e-15
Identities = 55/170 (32%), Positives = 96/170 (56%), Gaps = 11/170 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ ++ + RV I +++ F+L +AN RR+M+S+VPT+AI+ V I N+S
Sbjct: 34 WDLKTFKKRFRVVIVRSEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHILNNTS 93
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMT--DET 362
++ DE +AHRLGLIPL ++ R M+ R ++G Q ++EF L++KC D +
Sbjct: 94 IIQDEVLAHRLGLIPLKADPRLFEMKTDRKSSTAEGTEQ---DTLEFALKIKCTNNKDSS 150
Query: 363 LD-VTSKDLYSSDHTV------VPVDFSPDTSSD-SAVNKGIIIVKLRRG 488
D + ++D+Y +++ VP+ + SD ++ I+I K+R G
Sbjct: 151 KDSLRAEDMYKNNNVYSKHIKWVPIGKQKERFSDVGPIHPDILIAKMRPG 200
[208][TOP]
>UniRef100_C5GBG6 DNA-directed RNA polymerase I and III polypeptide n=2
Tax=Ajellomyces dermatitidis RepID=C5GBG6_AJEDR
Length = 380
Score = 83.6 bits (205), Expect = 6e-15
Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W + R +V + + A F L DA+IANA RR+MI+E+P++AI+ V I N+S
Sbjct: 43 WSIDVFKRNLKVTFHKNEPYEASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTS 102
Query: 192 VLNDEFIAHRLGLIPLT--SERAMAMRFSRDCDASDGDGQCEF---GSVEFHLRVKCMTD 356
V+ DE +AHRLGL+PLT +E +R+ R D E ++ HL V+C +
Sbjct: 103 VIQDEVLAHRLGLVPLTGAAEGINWLRWFRQPTEGKPDSGSELSDSNTIVLHLSVECTKN 162
Query: 357 ETLDVTSKD---------LYSSDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQ 491
+D +Y+ D T PV F + + N I++ KLR GQ
Sbjct: 163 PKASANEEDPQKLYNHAHVYAKDITFHPVGRQEAYFPEPYGAIRSANPDILLAKLRPGQ 221
[209][TOP]
>UniRef100_A1L3C2 Polr1c protein n=2 Tax=Mus musculus RepID=A1L3C2_MOUSE
Length = 347
Score = 83.2 bits (204), Expect = 8e-15
Identities = 52/172 (30%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + ++ +D F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 41 WDQNRFEKNFRVDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 100
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R + + +G E +++F L+V+C +
Sbjct: 101 IVQDEILAHRLGLIPILAD----PRLFEYRNQGEEEG-TEIDTLQFRLQVRCTRNPNAAK 155
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +Y+ T VP+ D + V+ I+I +LR GQ
Sbjct: 156 DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQ 207
[210][TOP]
>UniRef100_Q2HFB1 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2HFB1_CHAGB
Length = 374
Score = 83.2 bits (204), Expect = 8e-15
Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ S+ R RV+ + A F L DASIANA RR+MI+++PT+AI+ V I N+S
Sbjct: 43 WDIESFRRGFRVEFHQNDPYEASFSLIGIDASIANAFRRIMIADIPTLAIETVFINNNTS 102
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRF----SRDCDASD-GDGQCEFGSVEFHLRVKCMTD 356
V+ DE ++HRLGLIP +F + D S+ + + +V L V+C +
Sbjct: 103 VIQDEVLSHRLGLIPFKGGHEGLHKFLKWWRKPTDESEINNSYYDNNTVSLRLEVQCEHN 162
Query: 357 ETLDVTSKD---LYSSDHTVV-PVDFSPDTSSD---------SAVNKGIIIVKLRRGQ 491
E D LY + H ++F P D + VN I+I KLR GQ
Sbjct: 163 EKAAAGETDPTKLYKNAHVYARDIEFCPVGRQDKYFSGADAIAPVNPDILIAKLRPGQ 220
[211][TOP]
>UniRef100_A7AQ72 DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein n=1 Tax=Babesia bovis
RepID=A7AQ72_BABBO
Length = 319
Score = 82.4 bits (202), Expect = 1e-14
Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 6/155 (3%)
Frame = +3
Query: 45 VKIRELKDDM--ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
VKI+ LK+ A E+ + +IANA+RR++++EVPT+AI+ V I N+ V+ DE +AH
Sbjct: 34 VKIKFLKNTRYHAIAEIEGLNVAIANAIRRILLAEVPTLAIESVHIYQNTGVIQDEVLAH 93
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
RLGL+P + + + + D SD + C FHL+V+C + T+ +Y+ D
Sbjct: 94 RLGLVPFDCNPDL-IPYRDNEDLSDKNSVC------FHLKVECKKESLAGRTNLPVYAGD 146
Query: 399 HTVVPV-DFSPDTSSDS---AVNKGIIIVKLRRGQ 491
VP+ D + D+ ++K I++ KL GQ
Sbjct: 147 MKWVPLSDEQAELFKDNPPKPIHKDILLTKLSPGQ 181
[212][TOP]
>UniRef100_Q4PBM5 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4PBM5_USTMA
Length = 320
Score = 82.4 bits (202), Expect = 1e-14
Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
+V + L D F+L DASIANA+RRV+++EVPT+AI+ V I N+S++ DE ++HR
Sbjct: 94 KVIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 153
Query: 222 LGLIPLT-SERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETL--DVTSKDLYS 392
LGL+PL + +AMR GD + +V FHL+ KC + + T D
Sbjct: 154 LGLVPLAINPDKVAMRM-------PGDEADDSNTVVFHLKAKCERNRSAARGETDPDKLY 206
Query: 393 SDHTVVPVDFSPDT----------SSDSAVNKGIIIVKLRRGQ 491
H V D S V I+I KLR GQ
Sbjct: 207 IGHNVYSEQLRWDAKGGQEKDFADSPPRPVQDKILIAKLRPGQ 249
[213][TOP]
>UniRef100_UPI00005A26F8 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 6 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F8
Length = 328
Score = 82.0 bits (201), Expect = 2e-14
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLD 368
++ DE +AHRLGLIP+ ++ R R D D E +++F L+V+C +
Sbjct: 100 IVQDEILAHRLGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRCTRNPHAA 153
Query: 369 VTSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +YS T VP+ D + V+ I+I +LR GQ
Sbjct: 154 KDSSDPNELYVNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQ 206
[214][TOP]
>UniRef100_UPI00005A26F7 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 5 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F7
Length = 338
Score = 82.0 bits (201), Expect = 2e-14
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLD 368
++ DE +AHRLGLIP+ ++ R R D D E +++F L+V+C +
Sbjct: 100 IVQDEILAHRLGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRCTRNPHAA 153
Query: 369 VTSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +YS T VP+ D + V+ I+I +LR GQ
Sbjct: 154 KDSSDPNELYVNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQ 206
[215][TOP]
>UniRef100_UPI00005A26F6 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 4 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F6
Length = 296
Score = 82.0 bits (201), Expect = 2e-14
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLD 368
++ DE +AHRLGLIP+ ++ R R D D E +++F L+V+C +
Sbjct: 100 IVQDEILAHRLGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRCTRNPHAA 153
Query: 369 VTSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +YS T VP+ D + V+ I+I +LR GQ
Sbjct: 154 KDSSDPNELYVNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQ 206
[216][TOP]
>UniRef100_UPI00005A26F4 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 2 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F4
Length = 281
Score = 82.0 bits (201), Expect = 2e-14
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLD 368
++ DE +AHRLGLIP+ ++ R R D D E +++F L+V+C +
Sbjct: 100 IVQDEILAHRLGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRCTRNPHAA 153
Query: 369 VTSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +YS T VP+ D + V+ I+I +LR GQ
Sbjct: 154 KDSSDPNELYVNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQ 206
[217][TOP]
>UniRef100_UPI00004A557E PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 1 n=1 Tax=Canis
lupus familiaris RepID=UPI00004A557E
Length = 346
Score = 82.0 bits (201), Expect = 2e-14
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLD 368
++ DE +AHRLGLIP+ ++ R R D D E +++F L+V+C +
Sbjct: 100 IVQDEILAHRLGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRCTRNPHAA 153
Query: 369 VTSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +YS T VP+ D + V+ I+I +LR GQ
Sbjct: 154 KDSSDPNELYVNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQ 206
[218][TOP]
>UniRef100_B8NHK8 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=2
Tax=Aspergillus RepID=B8NHK8_ASPFN
Length = 373
Score = 82.0 bits (201), Expect = 2e-14
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 17/154 (11%)
Frame = +3
Query: 81 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSERA 254
F L DASIANA RR++++EVP++AI+ V + N+SV+ DE +A RLGLIPL + +
Sbjct: 66 FSLIGVDASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVDGI 125
Query: 255 MAMRFSRDCDASDGDGQ--CEFGSVEFHLRVKCMTDETLDVTSKD---------LYSSDH 401
MR+ + D +G ++ ++ L ++C + D T D +Y+ D
Sbjct: 126 NWMRWFKKATEDDPEGSDPSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYARDI 185
Query: 402 TVVPV----DFSPDTSSDSAVNKGIIIVKLRRGQ 491
T PV F + VN I+I KLR GQ
Sbjct: 186 TFHPVGRQEQFFTGEDAIQPVNPDILIAKLRPGQ 219
[219][TOP]
>UniRef100_UPI00017F0A34 PREDICTED: RNA polymerase I subunit hRPA39 n=1 Tax=Sus scrofa
RepID=UPI00017F0A34
Length = 346
Score = 81.6 bits (200), Expect = 2e-14
Identities = 52/172 (30%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R + D +G E +++F L+V+C + +
Sbjct: 100 IVQDEILAHRLGLIPIHAD----PRLFEYRNLGDEEG-TEIDTLQFRLQVRCTRNPSAAK 154
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +Y+ T VP+ D + V+ I+I +LR GQ
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQ 206
[220][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
histolytica HM-1:IMSS RepID=C4M554_ENTHI
Length = 283
Score = 81.6 bits (200), Expect = 2e-14
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
Y R P + E K++ F + TD S+ N LRRV+++E PTIAI LV + NSS L DE
Sbjct: 6 YNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDE 65
Query: 207 FIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL 386
FIAHRLGLIP+ S + + D L+ + +++ + VTS DL
Sbjct: 66 FIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKEENNSNQLVVVTSNDL 111
Query: 387 YS-SDHTVVPVDFSPD 431
S D V PV++ D
Sbjct: 112 VSIGDKRVAPVNYKND 127
[221][TOP]
>UniRef100_B0W725 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Culex
quinquefasciatus RepID=B0W725_CULQU
Length = 335
Score = 81.6 bits (200), Expect = 2e-14
Identities = 43/134 (32%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + R ++ + +++ F++ +IANA RR+M+SEVP++AI+ V I N+S
Sbjct: 35 WDFERFKRQLQIVVVRYEENELEFDMIGVSPAIANAFRRLMLSEVPSMAIEKVHIYNNTS 94
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKC--MTDETL 365
++ DE +AHRLGLIPL ++ + + ++GD ++EF L+VKC ++
Sbjct: 95 IIQDEVLAHRLGLIPLKADPRLF-----EYKTNEGDAANAQDTLEFELKVKCTKKNKDST 149
Query: 366 DVTSKDLYSSDHTV 407
+VT+ D +H++
Sbjct: 150 EVTNNDSMYKNHSI 163
[222][TOP]
>UniRef100_B2WCA1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Pyrenophora tritici-repentis Pt-1C-BFP
RepID=B2WCA1_PYRTR
Length = 376
Score = 81.6 bits (200), Expect = 2e-14
Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 23/162 (14%)
Frame = +3
Query: 75 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 254
A+F L D S+ANA RR+++SE+PT+AI+ V I N+S++ DE +AHRLGLIPL +RA
Sbjct: 62 AQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRA 121
Query: 255 MAMR---FSRDCDASDGD-GQCEFGSVEFHLRVKCM-------------TDETLDVTSKD 383
R +++ D +G G +V L+ KC TD +
Sbjct: 122 TLRRMKWYAKPTDEDEGSGGPTSENTVALTLKTKCTWQPGGVARAVAGETDPDRLYVGHN 181
Query: 384 LYSSDHTVVPVDFSPDTSSDS------AVNKGIIIVKLRRGQ 491
+Y+ D P + S++ + N I+I K+R GQ
Sbjct: 182 VYAKDMRFEPNGNQAENLSEAEGKHIRSTNPDILICKMRPGQ 223
[223][TOP]
>UniRef100_A8N510 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N510_COPC7
Length = 356
Score = 81.6 bits (200), Expect = 2e-14
Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W + + +V+I L F+L DASIANA RR+MI+EVPTIAI+ V + N+S
Sbjct: 37 WSLSKFKKNLKVQITRLSQHTIEFDLVGVDASIANAFRRIMIAEVPTIAIEHVYVWDNTS 96
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETL-- 365
V+ DE +AHR+GL+PL ++ S D +D D ++ F L V C +
Sbjct: 97 VIVDEVLAHRIGLVPLNVNPSIMDSRSPQNDPTDRD------TLIFKLDVTCTRNPNAPK 150
Query: 366 DVTSKDLYSSDHTVVPVD--FSP--------DTSSDSAVNKGIIIVKLRRGQ 491
T+ D +H V+ D +SP + + +N I++ KLR GQ
Sbjct: 151 GSTNPDELYINHEVLSRDLVWSPVGQQAEVFEGCPPAPINPNIVLTKLRPGQ 202
[224][TOP]
>UniRef100_B7Q825 Transferase, putative n=1 Tax=Ixodes scapularis RepID=B7Q825_IXOSC
Length = 344
Score = 81.3 bits (199), Expect = 3e-14
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + R ++ I L D F++ + +IANA+RR++++EVPT+A D V + N+S
Sbjct: 37 WDLKKFERNFQIGIVSLDDMTMEFDMIGVNPAIANAIRRILLAEVPTMAPDKVFMYNNTS 96
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETL-- 365
++ DE +AHR+GL+P + M +D + S D +VEF L+VKC +
Sbjct: 97 IVQDEVLAHRIGLVPFNIDPRMFDYREKDSEGSPED------TVEFELKVKCTRNPQAPK 150
Query: 366 DVTSKDLYSSDHTV-------VPVDFSPD---TSSDSAVNKGIIIVKLRRGQ 491
D T+ D DH V P+ + V II+ KLR GQ
Sbjct: 151 DATTPDELYKDHVVYTRHLTWTPIGSQAEIFGNKPPKPVYDDIILAKLRPGQ 202
[225][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
dispar SAW760 RepID=B0EHR6_ENTDI
Length = 283
Score = 81.3 bits (199), Expect = 3e-14
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
Y R P + E K++ F + TD S+ N LRRV+++E PTIAI LV + NSS L DE
Sbjct: 6 YNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDE 65
Query: 207 FIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDL 386
FIAHRLGLIP+ S + + D L+ + +++ + VTS DL
Sbjct: 66 FIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKKENNSNQLVVVTSNDL 111
Query: 387 YS-SDHTVVPVDFSPD 431
S D V PV++ D
Sbjct: 112 VSIGDKRVAPVNYRND 127
[226][TOP]
>UniRef100_Q8SSL9 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi
RepID=Q8SSL9_ENCCU
Length = 305
Score = 81.3 bits (199), Expect = 3e-14
Identities = 53/149 (35%), Positives = 79/149 (53%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
++I E + F+L + D SIANALRR++ SEVPT+A+ + ++ N SV DEFIAHRL
Sbjct: 32 IRITEYSSEKLEFDLINVDCSIANALRRILSSEVPTMAVRDIFLKENESVFPDEFIAHRL 91
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GL+PL + M + D E S+ F L V+ ++ L+V YS D
Sbjct: 92 GLVPLEVDPEMFEFAGEELD--------ERNSLRFTLDVRNESEGVLNV-----YSDDIR 138
Query: 405 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
PV + D + +++ +L RGQ
Sbjct: 139 WNPVGSQREIFRDVKFSSRVLMFRLARGQ 167
[227][TOP]
>UniRef100_UPI000023F302 hypothetical protein FG00365.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F302
Length = 381
Score = 80.9 bits (198), Expect = 4e-14
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 18/158 (11%)
Frame = +3
Query: 72 MARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 251
++ F L DAS+ANA RR+++SE+PT+A++ V IE N+SV+ DE +AHRLGLIP R
Sbjct: 70 LSSFSLVGIDASLANAFRRILLSEIPTLAVENVYIENNTSVIQDEVLAHRLGLIPFKGGR 129
Query: 252 A---MAMRFSRDCDASDGD--GQCEFGSVEFHLRVKCMTDETLDVTSKD---------LY 389
+++ + +A D G ++ +V L V C +E T D +Y
Sbjct: 130 EGLHNFLKWHKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEDASPTENDPLKAYHNAHVY 189
Query: 390 SSDHTVVP----VDFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ D VP ++ ++ + N I+I KLR Q
Sbjct: 190 ARDIVFVPTGRQAEYFSGENAIAPTNPDILIAKLRPRQ 227
[228][TOP]
>UniRef100_B0EJB9 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Entamoeba dispar SAW760 RepID=B0EJB9_ENTDI
Length = 291
Score = 80.9 bits (198), Expect = 4e-14
Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
+KI E + F+ D S+AN LRR+MI+EVPT+AI++V +E NSS + DE + HRL
Sbjct: 8 IKISE-SPEKVEFDAMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHRL 66
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GLIP+ ++ +F +D +D E ++ F L V C D + + +YSSD
Sbjct: 67 GLIPILAD-PRKFKFPKDRHFTD---PTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLI 122
Query: 405 VVPVDFSPDTSSDSAVN---KGIIIVKLRRGQ 491
P T +D + I+I +L+ Q
Sbjct: 123 WEPQGEQETTFADCPIKPVFDDILIAELQPHQ 154
[229][TOP]
>UniRef100_B8D6F8 DNA-directed RNA polymerase subunit D n=1 Tax=Desulfurococcus
kamchatkensis 1221n RepID=B8D6F8_DESK1
Length = 280
Score = 80.9 bits (198), Expect = 4e-14
Identities = 52/126 (41%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
+ I E + LRD + N+LRR ++SEVPT+A+D V I NSSV DE+I+HRL
Sbjct: 3 IDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRL 62
Query: 225 GLIPLTSERAM-AMRFSRDC-DASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSD 398
GLIPL S A+ + +C +A D + V L + L V S+DL SSD
Sbjct: 63 GLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDLVSSD 122
Query: 399 HTVVPV 416
VVPV
Sbjct: 123 PDVVPV 128
[230][TOP]
>UniRef100_P52432 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Mus
musculus RepID=RPAC1_MOUSE
Length = 346
Score = 80.9 bits (198), Expect = 4e-14
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + ++ +D F++ DA+IANA RR++++ VPT+A++ V + N+S
Sbjct: 40 WDQNRFEKNFRVGVVQMDEDTLEFDMVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R + + +G E +++F L+V+C +
Sbjct: 100 IVQDEILAHRLGLIPILAD----PRLFEYRNQGEEEG-TEIDTLQFRLQVRCTRNPNAAK 154
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +Y+ T VP+ D + V+ I+I +LR GQ
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQ 206
[231][TOP]
>UniRef100_Q5RJK9 Polymerase (RNA) I polypeptide C n=2 Tax=Rattus norvegicus
RepID=Q5RJK9_RAT
Length = 346
Score = 80.5 bits (197), Expect = 5e-14
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + + F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDESTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R + + +G E +++F L+V+C + +
Sbjct: 100 IVQDEILAHRLGLIPILAD----PRLFEYRNPGEEEG-TEIDTLQFRLQVRCTRNPSAAK 154
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +Y+ T VP+ D + V+ I+I +LR GQ
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHDDILIAQLRPGQ 206
[232][TOP]
>UniRef100_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
n=1 Tax=Trichomonas vaginalis G3 RepID=A2F4R6_TRIVA
Length = 322
Score = 80.5 bits (197), Expect = 5e-14
Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Frame = +3
Query: 39 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 218
P++ + + F L + ANALRRVMI+EVPT+A+D VE N+S L DE+IAH
Sbjct: 13 PQIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAH 72
Query: 219 RLGLIPLTSERAMAMRFSRDCDASDGD--GQCEFGSVEFHLRVKC--MTDETLDVTSKDL 386
RL LIP SE A + C+ DG G C +V + + C +D ++VTS DL
Sbjct: 73 RLALIPFVSEDADKFFYHSQCNC-DGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDL 131
[233][TOP]
>UniRef100_A2SSV7 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanocorpusculum
labreanum Z RepID=A2SSV7_METLZ
Length = 275
Score = 80.5 bits (197), Expect = 5e-14
Identities = 53/119 (44%), Positives = 69/119 (57%)
Frame = +3
Query: 60 LKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 239
L D +ARF + + ANALRR MI EVPT+AI+ + I N+SVL DE +AHRLGLIP+
Sbjct: 8 LDDSVARFTIHGATPAFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIPI 67
Query: 240 TSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV 416
++ + + S + S G C +V F L V + VTS DL S D VVPV
Sbjct: 68 KTDLSQYVPRS---ECSCGGEGCPHCTVMFTLSV----EGPKMVTSGDLISMDENVVPV 119
[234][TOP]
>UniRef100_Q7PPN8 AGAP008771-PA (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7PPN8_ANOGA
Length = 261
Score = 80.1 bits (196), Expect = 7e-14
Identities = 51/167 (30%), Positives = 92/167 (55%), Gaps = 12/167 (7%)
Frame = +3
Query: 24 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 203
S+ R ++ + ++ F++ +IAN RR+M+SEVP++AI+ V I N+S++ D
Sbjct: 1 SFKRKLQIVVVRYDENELEFDMIGVSCAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQD 60
Query: 204 EFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKC--MTDETLDVTS 377
E +AHRLGLIPL ++ M + A++ D ++EF L+VKC ++ +VT+
Sbjct: 61 EVLAHRLGLIPLRADPRMF-----EYKANETDPPSALDTLEFELKVKCTRKNKDSTEVTN 115
Query: 378 KDLYSSDHTV-------VPVDFSPDTSSDSAV---NKGIIIVKLRRG 488
+ +H++ VP+ +++AV + I+I K+R G
Sbjct: 116 NENMYKNHSIYSGQIKWVPIGNQATIYTEAAVGPIDDDILISKMRPG 162
[235][TOP]
>UniRef100_Q5JTE4 Polymerase (RNA) I polypeptide C, 30kDa n=1 Tax=Homo sapiens
RepID=Q5JTE4_HUMAN
Length = 314
Score = 80.1 bits (196), Expect = 7e-14
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R + D +G E +++F L+V+C +
Sbjct: 100 IVQDEILAHRLGLIPIHAD----PRLFEYRNQGDEEG-TEIDTLQFRLQVRCTRNPHAAK 154
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +Y+ T +P+ D + V+ I+I +LR GQ
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQ 206
[236][TOP]
>UniRef100_A2QD13 Complex: RCP40 of S. cerevisiae associates with RCP19 of S.
cerevisiae n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QD13_ASPNC
Length = 359
Score = 80.1 bits (196), Expect = 7e-14
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 24/184 (13%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMAR-------FELRDTDASIANALRRVMISEVPTIAIDLV 170
W G S+ +LK D R F L DASIANA RR++++EVP+IAI+ V
Sbjct: 36 WPGESHEWSLAKFKNDLKIDFHRNERFESSFSLIGVDASIANAFRRILMAEVPSIAIEYV 95
Query: 171 EIEVNSSVLNDEFIAHRLGLIPL--TSERAMAMRFSR--DCDASDGDGQCEFGSVEFHLR 338
+ N+SV+ DE +A RLGLIPL + E MR+ + D +G ++ ++ L
Sbjct: 96 FVHNNTSVIQDEVLAQRLGLIPLKGSVEGINWMRWFKKPTDDDPNGSSPADYNTIVLRLD 155
Query: 339 VKCMTDETLDVTSKD---------LYSSDHTVVPV----DFSPDTSSDSAVNKGIIIVKL 479
V+C + D D +Y+ D T PV F + VN I++ KL
Sbjct: 156 VECTKNPNADPEETDPRKLYKNAHVYAKDITFHPVGRQEQFFAGDDAIQPVNPDILVAKL 215
Query: 480 RRGQ 491
R GQ
Sbjct: 216 RPGQ 219
[237][TOP]
>UniRef100_Q12ZR3 DNA-directed RNA polymerase subunit D n=1 Tax=Methanococcoides
burtonii DSM 6242 RepID=Q12ZR3_METBU
Length = 267
Score = 80.1 bits (196), Expect = 7e-14
Identities = 61/149 (40%), Positives = 79/149 (53%)
Frame = +3
Query: 45 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 224
+ I EL D A+F L +T A+ AN +RR M+++VPT+AID V I N+SVL DE +A RL
Sbjct: 3 IDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLALRL 62
Query: 225 GLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKDLYSSDHT 404
GLIPLT+ + +D DG G C +V L V+ V S D+ SSD
Sbjct: 63 GLIPLTT--SFDDFVPQDKCTCDGAG-CPACTVSLTLSVETDESGQTIVHSGDIVSSDPN 119
Query: 405 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQ 491
V P D K I I+ LR GQ
Sbjct: 120 VQPAD------------KNIPIIDLRVGQ 136
[238][TOP]
>UniRef100_O15160-2 Isoform 2 of DNA-directed RNA polymerases I and III subunit RPAC1
n=1 Tax=Homo sapiens RepID=O15160-2
Length = 342
Score = 80.1 bits (196), Expect = 7e-14
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R + D +G E +++F L+V+C +
Sbjct: 100 IVQDEILAHRLGLIPIHAD----PRLFEYRNQGDEEG-TEIDTLQFRLQVRCTRNPHAAK 154
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +Y+ T +P+ D + V+ I+I +LR GQ
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQ 206
[239][TOP]
>UniRef100_O15160 DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Homo
sapiens RepID=RPAC1_HUMAN
Length = 346
Score = 80.1 bits (196), Expect = 7e-14
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S
Sbjct: 40 WDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTS 99
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDV 371
++ DE +AHRLGLIP+ ++ R + D +G E +++F L+V+C +
Sbjct: 100 IVQDEILAHRLGLIPIHAD----PRLFEYRNQGDEEG-TEIDTLQFRLQVRCTRNPHAAK 154
Query: 372 TSKD---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
S D +Y+ T +P+ D + V+ I+I +LR GQ
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQ 206
[240][TOP]
>UniRef100_C1MRA1 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MRA1_9CHLO
Length = 410
Score = 79.3 bits (194), Expect = 1e-13
Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
++++ L D+ FE++ +IANA RR++I+EVPT+AI+ V + N+SV+ DE AHR
Sbjct: 80 KLEVTHLDDEKVEFEMQGLSPAIANAFRRILIAEVPTMAIEKVFMVNNTSVIQDEVFAHR 139
Query: 222 LGLIPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LGLIP+ ++ R +R +GD E ++ F + VKC ++T D T
Sbjct: 140 LGLIPIRADPRLFDLR-------GEGDTPTEKNTIVFKMCVKCTREKTTDGT 184
[241][TOP]
>UniRef100_Q171Q8 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
RepID=Q171Q8_AEDAE
Length = 335
Score = 79.3 bits (194), Expect = 1e-13
Identities = 48/171 (28%), Positives = 93/171 (54%), Gaps = 12/171 (7%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + + ++ I +++ F++ + +IANA RR+M+SEVP++AI+ V I N+S
Sbjct: 35 WDFERFKQQLQIVIVRYEENELEFDMVGVNPAIANAFRRLMLSEVPSMAIEKVHIYNNTS 94
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKC--MTDETL 365
++ DE +AHRLGLIPL ++ + + ++ D ++EF L+VKC ++
Sbjct: 95 IIQDEVLAHRLGLIPLRADPRLF-----EYKTNENDPPNALDTLEFELKVKCTKKNKDST 149
Query: 366 DVTSKDLYSSDHTV-------VPVDFSPDTSSDS---AVNKGIIIVKLRRG 488
++T+ D +H++ +PV ++ ++ I+I K+R G
Sbjct: 150 EITNNDSMYKNHSIYSGQIKWIPVGNQASIYKEADVGPIDDDILISKMRPG 200
[242][TOP]
>UniRef100_Q5KIG6 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q5KIG6_CRYNE
Length = 350
Score = 79.3 bits (194), Expect = 1e-13
Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Frame = +3
Query: 51 IRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 230
++ L F+L DASIANALRR +I+EVPT+AI+ V + N+S++ DE + HR+GL
Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110
Query: 231 IPLTSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD-------- 383
+PL + R++ R S + + D +V F LRV+C +D + D
Sbjct: 111 VPLKIDPRSLRYRPSANSQPHEHD------TVVFDLRVRCDRRPNVDRSETDPKKMYFDS 164
Query: 384 -LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
+YS VP A VN I++VKLR GQ
Sbjct: 165 NVYSGMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQ 204
[243][TOP]
>UniRef100_B8MRS0 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MRS0_TALSN
Length = 373
Score = 79.3 bits (194), Expect = 1e-13
Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W ++ RV + + A F L DASIANA RR++I+EVPT+A++ V I N+S
Sbjct: 43 WSVENFQNNFRVDFHKNEPLDASFSLVGLDASIANAFRRILIAEVPTLAVEYVYIINNTS 102
Query: 192 VLNDEFIAHRLGLIPL--TSERAMAMRFSRDCDASD--GDGQCEFGSVEFHLRVKCMTDE 359
V+ DE +A RLGLIPL + E M++ + D G +F +V L V+C +E
Sbjct: 103 VIQDEVLASRLGLIPLKGSIEGLNWMQWFKKPTEEDPKGSEPSDFNTVVLRLNVECSVNE 162
Query: 360 TLDVTSKD---------LYSSDHTVVP----VDFSPDTSSDSAVNKGIIIVKLRRGQ 491
++D +Y+ D T P ++ VN I+I KLR GQ
Sbjct: 163 KAPPGAEDPRIRYHNAHIYARDITFHPQGRQTNYFTGDGEIQPVNPDILIAKLRPGQ 219
[244][TOP]
>UniRef100_B3LK74 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=3
Tax=Saccharomyces cerevisiae RepID=B3LK74_YEAS1
Length = 335
Score = 79.3 bits (194), Expect = 1e-13
Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 12/174 (6%)
Frame = +3
Query: 6 N*WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 185
N W + + V I L A F+L + D SIANA RR+MISEVP++A + V N
Sbjct: 29 NEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNN 88
Query: 186 SSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETL 365
+SV+ DE +AHR+GL+PL + M D + D + + ++ L VKC +
Sbjct: 89 TSVIQDEVLAHRIGLVPLKVDPDMLTWV--DSNLPDDEKFTDENTIVLSLNVKCTRNPDA 146
Query: 366 DVTS---KDLYSSDHTVV-PVDFSPD-----TSSDSAV---NKGIIIVKLRRGQ 491
S K+LY++ H + F P T +D V + I++ KLR GQ
Sbjct: 147 PKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQ 200
[245][TOP]
>UniRef100_A7TPZ5 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TPZ5_VANPO
Length = 320
Score = 79.3 bits (194), Expect = 1e-13
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%)
Frame = +3
Query: 6 N*WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 185
N W+ + + I ++ + +L + D SIANALRR+MISEVP++A + + I N
Sbjct: 15 NIWDANKFRENLEINISKVGERETNLDLINVDTSIANALRRIMISEVPSVAAEYIYILNN 74
Query: 186 SSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKC------ 347
+SV+ DE IA R+GLIPL + + D + + + ++ L VKC
Sbjct: 75 TSVIQDEVIAQRIGLIPLKVDPDRLTWLNN--DLPEDEKFTDENTIVLSLNVKCTRNLDA 132
Query: 348 ---MTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQ 491
TD ++ + +Y+ D P +T +DS V + I+I KLR GQ
Sbjct: 133 PKDCTDPSILYHNAHIYARDLKFEPQGKQEETFADSPVVSADPDILIAKLRPGQ 186
[246][TOP]
>UniRef100_P07703 DNA-directed RNA polymerases I and III subunit RPAC1 n=3
Tax=Saccharomyces cerevisiae RepID=RPAC1_YEAST
Length = 335
Score = 79.3 bits (194), Expect = 1e-13
Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 12/174 (6%)
Frame = +3
Query: 6 N*WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 185
N W + + V I L A F+L + D SIANA RR+MISEVP++A + V N
Sbjct: 29 NEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNN 88
Query: 186 SSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETL 365
+SV+ DE +AHR+GL+PL + M D + D + + ++ L VKC +
Sbjct: 89 TSVIQDEVLAHRIGLVPLKVDPDMLTWV--DSNLPDDEKFTDENTIVLSLNVKCTRNPDA 146
Query: 366 DVTS---KDLYSSDHTVV-PVDFSPD-----TSSDSAV---NKGIIIVKLRRGQ 491
S K+LY++ H + F P T +D V + I++ KLR GQ
Sbjct: 147 PKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQ 200
[247][TOP]
>UniRef100_Q2HPH1 RNA polymerase subunit I (Fragment) n=1 Tax=Bos taurus
RepID=Q2HPH1_BOVIN
Length = 250
Score = 79.0 bits (193), Expect = 2e-13
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 13/157 (8%)
Frame = +3
Query: 60 LKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 239
+ ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+
Sbjct: 3 MDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI 62
Query: 240 TSE-RAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD---------LY 389
++ R R D +G E +++F L+V+C + S D +Y
Sbjct: 63 HADPRLFEYRNQGD------EGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVY 116
Query: 390 SSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQ 491
+ T VP+ D + A V+ I+I +LR GQ
Sbjct: 117 TRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQ 153
[248][TOP]
>UniRef100_Q6FXP6 Strain CBS138 chromosome B complete sequence n=1 Tax=Candida
glabrata RepID=Q6FXP6_CANGA
Length = 334
Score = 79.0 bits (193), Expect = 2e-13
Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 20/182 (10%)
Frame = +3
Query: 6 N*WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 185
N W+ + +++ ++ F++ D S+ANA RR+MI+EVP +A + V I+ N
Sbjct: 29 NAWDVERFRETFDIQVSSHEERELNFDMIGIDTSLANAFRRIMIAEVPAVAPEYVYIQNN 88
Query: 186 SSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFH--------LRV 341
+SV+ DE +AHR+GL+PL + R D SD D ++EFH L V
Sbjct: 89 TSVIQDEVLAHRIGLVPLKVDPEKLERL----DTSDPD------NLEFHDKNTIVMTLNV 138
Query: 342 KC---------MTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRR 485
KC TD T+ + +Y+ D P +T +D V + I++ KLR
Sbjct: 139 KCTRNPDAPKDCTDPTILYNNAHVYARDLKFEPHSSQVETFADCPVVPCDPDILLAKLRP 198
Query: 486 GQ 491
GQ
Sbjct: 199 GQ 200
[249][TOP]
>UniRef100_C8VNX6 DNA-directed RNA polymerase I and III subunit Rpc40, putative
(AFU_orthologue; AFUA_2G13720) n=2 Tax=Emericella
nidulans RepID=C8VNX6_EMENI
Length = 373
Score = 79.0 bits (193), Expect = 2e-13
Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 18/168 (10%)
Frame = +3
Query: 42 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 221
RV + K A F L DASIANA RR++++EVPT+AI+ V I N+SV+ DE +A R
Sbjct: 53 RVDFHQNKKFEASFSLIGLDASIANAFRRIVMAEVPTLAIEWVYIHNNTSVIQDEVLAQR 112
Query: 222 LGLIPL--TSERAMAMR-FSRDCDASDGDGQ--CEFGSVEFHLRVKCM---------TDE 359
LGLIPL + E M+ +++ + G G ++ +V L V+C TD
Sbjct: 113 LGLIPLQGSVEGLNWMQWYNKGSEDEPGSGSDLADYNTVVLRLDVECTKNPNASRDETDP 172
Query: 360 TLDVTSKDLYSSDHTVVPV----DFSPDTSSDSAVNKGIIIVKLRRGQ 491
+ +Y+ D PV +F + AVN I++ KLR GQ
Sbjct: 173 RKLYKNAHVYAKDIVFHPVGRQEEFFTGEGAIRAVNPDILVAKLRPGQ 220
[250][TOP]
>UniRef100_C4XY85 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY85_CLAL4
Length = 333
Score = 79.0 bits (193), Expect = 2e-13
Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 12/172 (6%)
Frame = +3
Query: 12 WEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 191
W+ + R + I+ + A F+LR D SIANA RR+MI+EVP++A + V + N+S
Sbjct: 30 WDIEKFKRTFDIDIKYIAGRNANFDLRHIDTSIANAFRRIMIAEVPSVAAETVYVFNNTS 89
Query: 192 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKC-------- 347
V+ DE +AHR+GLIPL + + D A + + + ++ L V C
Sbjct: 90 VIQDEVLAHRIGLIPLNVDPDALVWI--DPAADEAERFNDTNTIVMSLDVSCTRNPHAPA 147
Query: 348 -MTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQ 491
TD L + +Y+ D P + DS V + I++ KLR GQ
Sbjct: 148 GTTDPKLLYRNSSVYARDLKFEPQGRQAELFKDSPVVPCDPDILLAKLRPGQ 199