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[1][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 207 bits (526), Expect(2) = e-104
Identities = 100/101 (99%), Positives = 100/101 (99%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK
Sbjct: 223 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 263
Score = 194 bits (494), Expect(2) = e-104
Identities = 96/96 (100%), Positives = 96/96 (100%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI
Sbjct: 70 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF
Sbjct: 130 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 165
[2][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 186 bits (472), Expect(2) = 2e-89
Identities = 89/98 (90%), Positives = 92/98 (93%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+FMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
FIPFLHAEEE LNFENN+HKVTLPLFT HD L K KL+
Sbjct: 226 FIPFLHAEEENLNFENNQHKVTLPLFTFHDRLLKDKLR 263
Score = 167 bits (424), Expect(2) = 2e-89
Identities = 83/95 (87%), Positives = 86/95 (90%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE +HEILMNLKEIVLKSNLYG RDASICFKGPGYVTAQ+IILPPSV I
Sbjct: 70 IPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VDNTQHIAN+TEPI LCI LQIER RGYRI TL N
Sbjct: 130 VDNTQHIANLTEPINLCIELQIERKRGYRIKTLNN 164
[3][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 184 bits (466), Expect(2) = 2e-89
Identities = 88/101 (87%), Positives = 92/101 (91%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K FQDGSY IDA FMPVRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
IDLFIPFLHAEE+ N ENN+HKVTLPLFT HD+LAK KL+
Sbjct: 223 IDLFIPFLHAEEDNFNLENNQHKVTLPLFTFHDILAKEKLR 263
Score = 169 bits (429), Expect(2) = 2e-89
Identities = 82/96 (85%), Positives = 89/96 (92%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTI+GI+E VHEILMNLKEIVL+SNLYG RDASICFKGPGYVTAQ+IILPPSV I
Sbjct: 70 IPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIANVTEP+ LCI L+IER+RGYRI TLKNF
Sbjct: 130 VDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNF 165
[4][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 184 bits (466), Expect(2) = 2e-89
Identities = 88/101 (87%), Positives = 92/101 (91%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K FQDGSY IDA FMPVRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
IDLFIPFLHAEE+ N ENN+HKVTLPLFT HD+LAK KL+
Sbjct: 223 IDLFIPFLHAEEDNFNLENNQHKVTLPLFTFHDILAKEKLR 263
Score = 169 bits (429), Expect(2) = 2e-89
Identities = 82/96 (85%), Positives = 89/96 (92%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTI+GI+E VHEILMNLKEIVL+SNLYG RDASICFKGPGYVTAQ+IILPPSV I
Sbjct: 70 IPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIANVTEP+ LCI L+IER+RGYRI TLKNF
Sbjct: 130 VDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNF 165
[5][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 175 bits (443), Expect(2) = 6e-84
Identities = 84/101 (83%), Positives = 90/101 (89%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K FQDGSY+IDA FMPVRN N+SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS+NL
Sbjct: 163 KNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
IDLFIPFLHAEEE N E +HKVTLPLFT HD+L K KL+
Sbjct: 223 IDLFIPFLHAEEENFNLEKKKHKVTLPLFTFHDILVKDKLR 263
Score = 160 bits (405), Expect(2) = 6e-84
Identities = 77/96 (80%), Positives = 86/96 (89%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTI+GI+E VHEI MNLKEIVLKSN+YG +DASI FKGPGY+TAQ+IILPPSV I
Sbjct: 70 IPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGTQDASISFKGPGYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDN QHIANVTEP+ LCI L+IER+RGYRI TLKNF
Sbjct: 130 VDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNF 165
[6][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 173 bits (438), Expect(2) = 6e-84
Identities = 82/101 (81%), Positives = 91/101 (90%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K FQDGSY+IDA FMPVRN N+SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS+NL
Sbjct: 163 KNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
I+LFIPFLHAEE+ + E N+HKVTLPLFT HD+L K KL+
Sbjct: 223 IELFIPFLHAEEDNFHLEKNQHKVTLPLFTFHDILVKDKLR 263
Score = 162 bits (410), Expect(2) = 6e-84
Identities = 78/96 (81%), Positives = 87/96 (90%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTI+GI+E VHEI MNLKEIVLKSN+YGI+DASI FKGPGY+TAQ+IILPPSV I
Sbjct: 70 IPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGIQDASISFKGPGYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDN QHIANVTEP+ LCI L+IER+RGYRI TLKNF
Sbjct: 130 VDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNF 165
[7][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 177 bits (450), Expect(2) = 1e-83
Identities = 83/90 (92%), Positives = 87/90 (96%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+FMPVRNANHSIHSYVNGN+KQEILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 165 QDGSYTIDAVFMPVRNANHSIHSYVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDL 224
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHD 25
FIPFLHAEEE LNFENN+HK+TLPLFT HD
Sbjct: 225 FIPFLHAEEENLNFENNQHKMTLPLFTFHD 254
Score = 157 bits (396), Expect(2) = 1e-83
Identities = 78/95 (82%), Positives = 85/95 (89%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE +HEILMNLKEIVL+SNLYG R+ASICFKGPGYVTAQ+IIL PSV +
Sbjct: 70 IPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTREASICFKGPGYVTAQDIIL-PSVEV 128
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
+DNTQHIAN+TEPI LCI LQIER RGYRI TL N
Sbjct: 129 IDNTQHIANLTEPINLCIELQIERKRGYRIKTLNN 163
[8][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 173 bits (438), Expect(2) = 2e-83
Identities = 83/98 (84%), Positives = 88/98 (89%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QD SY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDL
Sbjct: 166 QDESYTIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
FIPFLHAEE+KLN ENN+ KVTLPLFT HD K KL+
Sbjct: 226 FIPFLHAEEDKLNLENNQQKVTLPLFTFHDRFVKDKLR 263
Score = 160 bits (405), Expect(2) = 2e-83
Identities = 78/95 (82%), Positives = 86/95 (90%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE +HEILMNLKEIVL+SNLYG RDASICFKGPG VTAQ+IILPPSV I
Sbjct: 70 IPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGSVTAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VDNTQHIAN+TEPI LC+ L++ER+RGYRI TL N
Sbjct: 130 VDNTQHIANLTEPINLCMELKLERNRGYRIKTLNN 164
[9][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 174 bits (441), Expect(2) = 1e-82
Identities = 84/99 (84%), Positives = 90/99 (90%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K FQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 163 KNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLFIPFLHAEEE L+ ENN++KVTLP FT HD LAK +
Sbjct: 223 IDLFIPFLHAEEENLHLENNQYKVTLPFFTFHDRLAKLR 261
Score = 157 bits (396), Expect(2) = 1e-82
Identities = 79/96 (82%), Positives = 85/96 (88%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R+ASIC KGPG VTAQ+IILP SV I
Sbjct: 70 IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQDIILPTSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQ+IAN+TEPI LCIGLQIER+RGY I T KNF
Sbjct: 130 VDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNF 165
[10][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 168 bits (425), Expect(2) = 2e-80
Identities = 81/99 (81%), Positives = 87/99 (87%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+
Sbjct: 165 FQDGSYPIDAVFMPVQNANHSIHSYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLHAEEEK ENN+HKVTLP F HD LAK + K
Sbjct: 225 LFIPFLHAEEEKFYLENNQHKVTLPFFPFHDRLAKLRKK 263
Score = 155 bits (393), Expect(2) = 2e-80
Identities = 78/96 (81%), Positives = 84/96 (87%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+SNLYG RDA IC KGPGYVTAQ+I+LPPSV I
Sbjct: 70 IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAFICVKGPGYVTAQDIVLPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI L IGLQIER+RGY I T NF
Sbjct: 130 VDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNF 165
[11][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 168 bits (425), Expect(2) = 2e-80
Identities = 84/101 (83%), Positives = 90/101 (89%), Gaps = 2/101 (1%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQD SY +DAIFMPVRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNF--ENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLHAEEEK NF +NN+ KVTLPLFT H+ LAK + K
Sbjct: 225 LFIPFLHAEEEKENFHLKNNKKKVTLPLFTFHEKLAKLRKK 265
Score = 155 bits (392), Expect(2) = 2e-80
Identities = 78/96 (81%), Positives = 83/96 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+SNLYG RDASIC KGPG VTAQ+IILPPSV I
Sbjct: 70 IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIAN+ EPI LCI L+IER+RGY I T NF
Sbjct: 130 VDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNF 165
[12][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 164 bits (415), Expect(2) = 4e-80
Identities = 82/96 (85%), Positives = 86/96 (89%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ+IILPPSV I
Sbjct: 70 IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIAN+TEPI LCI LQIER+RGYRI T NF
Sbjct: 130 VDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNF 165
Score = 158 bits (400), Expect(2) = 4e-80
Identities = 78/97 (80%), Positives = 84/97 (86%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQ+GSY IDA+FMPVRNANHSIHSYVNGNE QEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQNGSYPIDAVFMPVRNANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPF HAEE + ENN+HK TLPLF H LAK +
Sbjct: 225 LFIPFFHAEE---HLENNQHKGTLPLFNFHGRLAKPR 258
[13][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 162 bits (411), Expect(2) = 5e-80
Identities = 79/100 (79%), Positives = 87/100 (87%), Gaps = 2/100 (2%)
Frame = -3
Query: 294 QDGSYNIDA--IFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 121
QDGSY ID +FMPV +AN+SIHSY+N NEKQEILFLEIWTNGSLTPKEALYEA+RNLI
Sbjct: 166 QDGSYTIDVDPVFMPVIHANYSIHSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLI 225
Query: 120 DLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
DLFIPFLHAEEE +FENN+HKVTLPLF HD L K KL+
Sbjct: 226 DLFIPFLHAEEENFHFENNQHKVTLPLFAFHDRLVKDKLR 265
Score = 159 bits (403), Expect(2) = 5e-80
Identities = 78/95 (82%), Positives = 85/95 (89%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE +HEILMNLK+IVL+SNLYG RDASICFKGPGYVTA++IILPPSV I
Sbjct: 70 IPHEYSTIVGIQESIHEILMNLKQIVLRSNLYGTRDASICFKGPGYVTARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VDNTQHIAN+TEPI LCI LQIER RGYR T+ N
Sbjct: 130 VDNTQHIANLTEPINLCIELQIERARGYRKKTIDN 164
[14][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 162 bits (410), Expect(2) = 2e-79
Identities = 79/101 (78%), Positives = 83/101 (82%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K F DGSY IDA+FMPVRNANHSIH Y N NEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 165 KNFHDGSYPIDAVFMPVRNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNL 224
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
IDLFIPFLH EEE L+ ENN+H VTLP F HD L K K
Sbjct: 225 IDLFIPFLHTEEENLHLENNQHDVTLPFFPFHDRLVKLTKK 265
Score = 158 bits (400), Expect(2) = 2e-79
Identities = 78/96 (81%), Positives = 85/96 (88%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+ NLYG R+A IC KGPGYVTAQ+IILPPSV I
Sbjct: 72 IPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEI 131
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQH+A++TEPI LCIGLQIER+RGY I T KNF
Sbjct: 132 VDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNF 167
[15][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 164 bits (414), Expect(2) = 8e-79
Identities = 78/99 (78%), Positives = 84/99 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F DGSY ID +FMPVRN NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 167 FHDGSYPIDVVFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 226
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLHAEEE + EN++HKVTLP F HD L K + K
Sbjct: 227 LFIPFLHAEEENSHLENSQHKVTLPFFPFHDKLTKLRKK 265
Score = 154 bits (390), Expect(2) = 8e-79
Identities = 77/96 (80%), Positives = 83/96 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I GIQE VHEILMNLKEIVL+SNLYG R+A IC KGPGYVTAQ+IILPPSV I
Sbjct: 72 IPHEYSIIAGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQDIILPPSVEI 131
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI LCIGLQIER+RGY I T NF
Sbjct: 132 VDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNF 167
[16][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 172 bits (437), Expect(2) = 3e-78
Identities = 81/99 (81%), Positives = 89/99 (89%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K FQDGSY+IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 163 KNFQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLFIPFLHAEEE + E N+HK+TLPLF HD LAK +
Sbjct: 223 IDLFIPFLHAEEENFHLEKNQHKITLPLFAFHDRLAKLR 261
Score = 144 bits (362), Expect(2) = 3e-78
Identities = 71/96 (73%), Positives = 81/96 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HE+STI GIQE +HEILMNLKEIVL+SNLYG DASIC KGPG VTAQ+IILPPSV I
Sbjct: 70 IPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHDASICVKGPGCVTAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA++ EPI L IGL+IER+RGY + KNF
Sbjct: 130 IDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNF 165
[17][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 169 bits (428), Expect(2) = 5e-78
Identities = 81/97 (83%), Positives = 87/97 (89%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLHAEEE L+ E N+HKVTLPLFT H L K +
Sbjct: 225 LFIPFLHAEEENLHLEINQHKVTLPLFTFHGRLTKLR 261
Score = 146 bits (369), Expect(2) = 5e-78
Identities = 72/96 (75%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HE+STI GIQE +HEILMNLK +VLKSNLYG DASI KGPGYVTAQ+IILPP V I
Sbjct: 70 IPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA++TE I LCIGLQIER+RGYRI NF
Sbjct: 130 IDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNF 165
[18][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 165 bits (418), Expect(2) = 8e-78
Identities = 80/97 (82%), Positives = 86/97 (88%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY NGNE+QEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDAVFMPVRNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLHAEEE L+ E N+HK TLP T HD LAK +
Sbjct: 225 LFIPFLHAEEETLHLEYNQHKSTLPPLTFHDRLAKLR 261
Score = 149 bits (377), Expect(2) = 8e-78
Identities = 75/96 (78%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ+II PPSV I
Sbjct: 70 IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA + EPI LCIGLQIER+RGY I NF
Sbjct: 130 VDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNF 165
[19][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 165 bits (418), Expect(2) = 8e-78
Identities = 80/97 (82%), Positives = 86/97 (88%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY NGNE+QEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 159 FQDGSYPIDAVFMPVRNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLID 218
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLHAEEE L+ E N+HK TLP T HD LAK +
Sbjct: 219 LFIPFLHAEEETLHLEYNQHKSTLPPLTFHDRLAKLR 255
Score = 149 bits (377), Expect(2) = 8e-78
Identities = 75/96 (78%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ+II PPSV I
Sbjct: 64 IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEI 123
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA + EPI LCIGLQIER+RGY I NF
Sbjct: 124 VDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNF 159
[20][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 172 bits (437), Expect(2) = 1e-77
Identities = 81/99 (81%), Positives = 89/99 (89%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K FQDGSY+IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 163 KNFQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLFIPFLHAEEE + E N+HK+TLPLF HD LAK +
Sbjct: 223 IDLFIPFLHAEEESFHLEKNQHKITLPLFAFHDRLAKLR 261
Score = 142 bits (357), Expect(2) = 1e-77
Identities = 70/96 (72%), Positives = 81/96 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HE+STI GIQE +HEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ+IILPPSV I
Sbjct: 70 IPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHNASICVKGPGCVTAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA++ EPI L IGL+IER+RGY + KNF
Sbjct: 130 IDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNF 165
[21][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 164 bits (414), Expect(2) = 1e-77
Identities = 78/96 (81%), Positives = 86/96 (89%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDL
Sbjct: 166 QDGSYPIDAVFMPVRNANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHA+EE + E+N++ VTLP FT HD LAK +
Sbjct: 226 FIPFLHAQEENILLEDNQNGVTLPFFTFHDRLAKIR 261
Score = 150 bits (379), Expect(2) = 1e-77
Identities = 73/95 (76%), Positives = 82/95 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGI+E VHEILMNLKEIVL+SNLYG R+ASIC +GPGYVTAQ+II PPSV
Sbjct: 70 IPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRNASICIRGPGYVTAQDIISPPSVET 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VDNTQHIAN+TEPI CI L+IER+RGYR+ T N
Sbjct: 130 VDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNN 164
[22][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 163 bits (412), Expect(2) = 2e-77
Identities = 79/98 (80%), Positives = 86/98 (87%), Gaps = 2/98 (2%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY+IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 168 QDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDF 227
Query: 114 FIPFLHAEEEKLN--FENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHAEEE L+ E N+HKVTLPLF HD L K +
Sbjct: 228 FIPFLHAEEENLHLEIEKNQHKVTLPLFCFHDKLTKLR 265
Score = 150 bits (379), Expect(2) = 2e-77
Identities = 73/96 (76%), Positives = 82/96 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HE+STI GIQE +HEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ+IILPP V I
Sbjct: 70 IPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQDIILPPFVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA++T+ I LCIGLQIER+RGYRI NF
Sbjct: 130 IDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNF 165
[23][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 159 bits (401), Expect(2) = 4e-77
Identities = 76/96 (79%), Positives = 83/96 (86%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
+DGSY IDA+FMPVRNANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDL
Sbjct: 167 KDGSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDL 226
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLH EEE L+ NN+H V LP FT HD L K +
Sbjct: 227 FIPFLHTEEENLHLANNQHMVPLPPFTFHDKLDKLR 262
Score = 154 bits (388), Expect(2) = 4e-77
Identities = 75/98 (76%), Positives = 86/98 (87%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYST+VGIQE VH+ILMNLKEIVL+SNLYG DASIC +GPGYVTAQ+IILPP V +
Sbjct: 70 IPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEV 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFSR 290
VDNTQHIA++TEPI+LCIGLQIER+RGY I T N S+
Sbjct: 130 VDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSK 167
[24][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 162 bits (409), Expect(2) = 5e-77
Identities = 78/97 (80%), Positives = 85/97 (87%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LF+PFLHAEEE L+ NN++ VT PLFT H LAK +
Sbjct: 225 LFLPFLHAEEENLHLGNNKYNVTFPLFTFHKKLAKLR 261
Score = 150 bits (379), Expect(2) = 5e-77
Identities = 74/96 (77%), Positives = 83/96 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ+I+LPPSV I
Sbjct: 70 IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA++ EPI LCIGLQIER+RGY I + NF
Sbjct: 130 IDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNF 165
[25][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 159 bits (402), Expect(2) = 7e-77
Identities = 77/95 (81%), Positives = 83/95 (87%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
LFIPFLH EE+ L ++N+H V L FT HD LAK
Sbjct: 225 LFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
Score = 152 bits (385), Expect(2) = 7e-77
Identities = 73/96 (76%), Positives = 83/96 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GIQE VHEI+MNLKEIVL+SNLYG +AS+C KGPGYVTAQ+IILPP V I
Sbjct: 70 VPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTSEASVCVKGPGYVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI CIGLQIER+RGY I T +NF
Sbjct: 130 VDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNF 165
[26][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 157 bits (397), Expect(2) = 7e-77
Identities = 75/95 (78%), Positives = 83/95 (87%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILF+EIWTNGSLTPKEAL++ASRNLID
Sbjct: 165 FQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
LFIPFLH EE+ L ++N+H V L FT HD LAK
Sbjct: 225 LFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
Score = 154 bits (390), Expect(2) = 7e-77
Identities = 76/96 (79%), Positives = 82/96 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ+IILPP V I
Sbjct: 70 VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI CIGLQIER+RGY I T NF
Sbjct: 130 VDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNF 165
[27][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 160 bits (404), Expect(2) = 2e-76
Identities = 76/97 (78%), Positives = 84/97 (86%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLID
Sbjct: 166 FQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLID 225
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLH EEE L+ +N+H V LP FT H+ L K +
Sbjct: 226 LFIPFLHTEEENLHLADNQHTVPLPPFTFHEKLTKLR 262
Score = 150 bits (379), Expect(2) = 2e-76
Identities = 74/95 (77%), Positives = 81/95 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYST+VGIQE VHEILMNLKEI+LKSNLYG DASIC +GPGYVTAQ+II PP V I
Sbjct: 70 IPHEYSTLVGIQESVHEILMNLKEIILKSNLYGTCDASICIRGPGYVTAQDIISPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VDNTQHIA++ EPI LCIGLQIER+RGY I T N
Sbjct: 130 VDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNN 164
[28][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 157 bits (397), Expect(2) = 2e-76
Identities = 75/95 (78%), Positives = 83/95 (87%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILF+EIWTNGSLTPKEAL++ASRNLID
Sbjct: 165 FQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
LFIPFLH EE+ L ++N+H V L FT HD LAK
Sbjct: 225 LFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
Score = 153 bits (386), Expect(2) = 2e-76
Identities = 75/96 (78%), Positives = 82/96 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GIQE VHEILMNLKEIVL+SNLYG +ASIC KGPGYVTAQ+IILPP V I
Sbjct: 70 VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI CIGLQIER+RGY I T NF
Sbjct: 130 VDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNF 165
[29][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 159 bits (403), Expect(2) = 3e-76
Identities = 77/97 (79%), Positives = 84/97 (86%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LF+PFLHAEEE L+ N++ VT PLFT H LAK +
Sbjct: 225 LFLPFLHAEEENLHLGKNKYNVTFPLFTFHKKLAKLR 261
Score = 150 bits (379), Expect(2) = 3e-76
Identities = 74/96 (77%), Positives = 83/96 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ+I+LPPSV I
Sbjct: 70 IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA++ EPI LCIGLQIER+RGY I + NF
Sbjct: 130 IDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNF 165
[30][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 159 bits (402), Expect(2) = 3e-76
Identities = 77/95 (81%), Positives = 83/95 (87%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
LFIPFLH EE+ L ++N+H V L FT HD LAK
Sbjct: 225 LFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
Score = 150 bits (380), Expect(2) = 3e-76
Identities = 74/96 (77%), Positives = 81/96 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GIQE VHEILMNLKEI+L+SNLYG DASIC KGPG VTAQ+IILPP V I
Sbjct: 70 VPHEYSTITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI CIGLQIER+RGY I T NF
Sbjct: 130 VDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNF 165
[31][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 159 bits (402), Expect(2) = 3e-76
Identities = 77/95 (81%), Positives = 83/95 (87%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
LFIPFLH EE+ L ++N+H V L FT HD LAK
Sbjct: 225 LFIPFLHIEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
Score = 150 bits (379), Expect(2) = 3e-76
Identities = 74/96 (77%), Positives = 82/96 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI+GIQE VHEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ+IILPP V I
Sbjct: 70 VPHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TE I CIGLQI+R+RGY I T NF
Sbjct: 130 VDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNF 165
[32][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 159 bits (401), Expect(2) = 6e-76
Identities = 76/96 (79%), Positives = 84/96 (87%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
Q+GSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QNGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHAEEE +NF+ N+++ TLP+FT D L K
Sbjct: 226 FIPFLHAEEEDINFKENKNRFTLPIFTFQDRLTNLK 261
Score = 150 bits (378), Expect(2) = 6e-76
Identities = 71/95 (74%), Positives = 81/95 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI+GI+E VHEIL+NLKEIVL+SN+YG+RDASIC +GP YVTAQ+II PPSV I
Sbjct: 70 VPHEYSTIIGIEESVHEILLNLKEIVLRSNIYGVRDASICARGPKYVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIAN+TEPI LCIGLQI RDRGYR N
Sbjct: 130 VDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTN 164
[33][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 160 bits (404), Expect(2) = 1e-75
Identities = 77/96 (80%), Positives = 84/96 (87%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDG Y IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDL
Sbjct: 166 QDGRYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHA EE ++N++KV LPLFT HD LAK +
Sbjct: 226 FIPFLHANEENFILKDNQNKVALPLFTFHDRLAKQR 261
Score = 148 bits (373), Expect(2) = 1e-75
Identities = 72/95 (75%), Positives = 82/95 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS IVGI+E VHEILMNLKEIVL+SNLYG RDASIC +GP +VTAQ+II PPSV I
Sbjct: 70 IPHEYSNIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRHVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
+D TQHIA++TEPI LCIGLQIER+RGY + T KN
Sbjct: 130 IDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKN 164
[34][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 155 bits (393), Expect(2) = 1e-75
Identities = 75/96 (78%), Positives = 83/96 (86%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
Q+ SY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWT+GSLTPKEALYEASRNLIDL
Sbjct: 166 QERSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHAEE+ E+N+ +VTLP FT HD L K +
Sbjct: 226 FIPFLHAEEQDTKLEDNQSRVTLPFFTFHDGLDKVR 261
Score = 152 bits (384), Expect(2) = 1e-75
Identities = 76/95 (80%), Positives = 83/95 (87%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGI+E VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ+II PPSV I
Sbjct: 70 IPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIA++TEPI LCI LQIER+RGYR+ T N
Sbjct: 130 VDITQHIASLTEPIDLCIELQIERNRGYRMKTPNN 164
[35][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 157 bits (397), Expect(2) = 2e-75
Identities = 76/96 (79%), Positives = 84/96 (87%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRNANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDL
Sbjct: 166 QDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHAEEE +NFE N+++ T+P FT D LA K
Sbjct: 226 FIPFLHAEEEDINFEENQNRFTVPPFTFPDRLANLK 261
Score = 150 bits (378), Expect(2) = 2e-75
Identities = 72/95 (75%), Positives = 82/95 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E VHEILMNLKEIVL+SNLYG RDASIC +GP VTAQ+II PPSV +
Sbjct: 70 VPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEV 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIA++TEPI LCIGLQI+RDRGYR+ T KN
Sbjct: 130 VDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKN 164
[36][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 157 bits (397), Expect(2) = 2e-75
Identities = 76/96 (79%), Positives = 84/96 (87%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRNANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDL
Sbjct: 166 QDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHAEEE +NFE N+++ T+P FT D LA K
Sbjct: 226 FIPFLHAEEEDINFEENQNRFTVPPFTFPDRLANLK 261
Score = 150 bits (378), Expect(2) = 2e-75
Identities = 72/95 (75%), Positives = 82/95 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E VHEILMNLKEIVL+SNLYG RDASIC +GP VTAQ+II PPSV +
Sbjct: 70 VPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEV 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIA++TEPI LCIGLQI+RDRGYR+ T KN
Sbjct: 130 VDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKN 164
[37][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 157 bits (397), Expect(2) = 2e-75
Identities = 79/100 (79%), Positives = 86/100 (86%), Gaps = 1/100 (1%)
Frame = -3
Query: 297 FQDGS-YNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 121
FQDG+ Y IDA+FMPVRNANHSI SY NGNEKQEILFLEIWTNGSLTPKEAL+EASR+LI
Sbjct: 165 FQDGNCYPIDAVFMPVRNANHSIQSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLI 224
Query: 120 DLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
DLFIPFL AE+E L ENN++KVTLP FT HD LAK K
Sbjct: 225 DLFIPFLQAEDENLPLENNQYKVTLPFFTFHDRLAKLTKK 264
Score = 150 bits (378), Expect(2) = 2e-75
Identities = 75/96 (78%), Positives = 81/96 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLK+IVL+SNLYG DA IC KGPGYVTAQ+I+LPPSV I
Sbjct: 70 IPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI L IGLQIER RGY I T F
Sbjct: 130 VDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTF 165
[38][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 158 bits (400), Expect(2) = 3e-75
Identities = 78/96 (81%), Positives = 85/96 (88%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+ NLYG R+A IC KGPGYVTAQ+IILPPSV I
Sbjct: 72 IPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEI 131
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQH+A++TEPI LCIGLQIER+RGY I T KNF
Sbjct: 132 VDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNF 167
Score = 148 bits (373), Expect(2) = 3e-75
Identities = 72/89 (80%), Positives = 77/89 (86%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K F DGSY IDA+FMPVRNANHSIH Y N NEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 165 KNFHDGSYPIDAVFMPVRNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNL 224
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLF 37
IDLFI FLHA+EE L+ ENN+H VTL F
Sbjct: 225 IDLFIHFLHAKEENLHLENNQHDVTLHFF 253
[39][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 159 bits (402), Expect(2) = 4e-75
Identities = 77/96 (80%), Positives = 82/96 (85%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHAEEE +NFE N+++ TLP T D L K
Sbjct: 226 FIPFLHAEEEDINFEENKNRFTLPFLTFQDRLTNLK 261
Score = 147 bits (370), Expect(2) = 4e-75
Identities = 71/95 (74%), Positives = 82/95 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI+GI+E VHEIL+NLKEIVL+SNLYG+RDASIC +GP YVTAQ+IILPPSV I
Sbjct: 70 VPHEYSTIIGIEESVHEILLNLKEIVLRSNLYGVRDASICVRGPRYVTAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIAN+TEPI L I LQI+RDRGYR+ N
Sbjct: 130 VDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNN 164
[40][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 154 bits (389), Expect(2) = 4e-75
Identities = 74/97 (76%), Positives = 85/97 (87%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDGSY ID +FMPVRNANHSIHSY NG EKQEILFLEIWTNGSLTPKEALYEASRNLI+
Sbjct: 165 YQDGSYPIDTVFMPVRNANHSIHSYGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLHAEE+++ E++E+ T+PLFT H+ LA K
Sbjct: 225 LFIPFLHAEEQEILLEDSENISTVPLFTFHNELANLK 261
Score = 152 bits (383), Expect(2) = 4e-75
Identities = 74/96 (77%), Positives = 83/96 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYSTIVGI+E VHEILMNLKEIVL+SNLYG DASIC +GP VTAQ+II PPSV I
Sbjct: 70 VTHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTLDASICVRGPRSVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD TQHIAN+TEPI LCIGLQIERDRGYR+ T N+
Sbjct: 130 VDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNY 165
[41][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 160 bits (406), Expect(2) = 5e-75
Identities = 78/97 (80%), Positives = 87/97 (89%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGS+ IDA+FMPVRN NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLID
Sbjct: 165 FQDGSFPIDALFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
L IPFLHA EE +N E+N+HKV+LPLFT H+ LA+ +
Sbjct: 225 LLIPFLHA-EENVNLEDNQHKVSLPLFTFHNRLAEIR 260
Score = 145 bits (365), Expect(2) = 5e-75
Identities = 72/96 (75%), Positives = 81/96 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GP VTAQ+IILPP V I
Sbjct: 70 IPHEYSTILGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRGVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI LCIGLQ+ER+RGY I NF
Sbjct: 130 VDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNF 165
[42][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 155 bits (392), Expect(2) = 5e-75
Identities = 76/97 (78%), Positives = 81/97 (83%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EA RNLID
Sbjct: 139 FQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLID 198
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLH EEE L E+N+H V L T HD L K +
Sbjct: 199 LFIPFLHKEEENLPLEDNQHTVPLSPLTFHDKLDKLR 235
Score = 150 bits (379), Expect(2) = 5e-75
Identities = 74/96 (77%), Positives = 82/96 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC +GPGYVTAQ+IILPP V I
Sbjct: 44 VPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEI 103
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI LCIGLQI+R+RGY I NF
Sbjct: 104 VDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNF 139
[43][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 163 bits (413), Expect(2) = 8e-75
Identities = 79/98 (80%), Positives = 88/98 (89%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
Q+GSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDL
Sbjct: 166 QNGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
FIPFLHAEE+ + E+N+++VTLP FT HD LAK K K
Sbjct: 226 FIPFLHAEEQDIILEDNQNRVTLPFFTFHDGLAKLKKK 263
Score = 141 bits (356), Expect(2) = 8e-75
Identities = 70/92 (76%), Positives = 79/92 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGI+E VHEILMNLKEIVL+SNLYG DASIC KGP +TA++II PPSV I
Sbjct: 70 IPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTCDASICVKGPINITAKDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINT 308
VD TQHIA++TEP LCIGLQIER+RGYR+ T
Sbjct: 130 VDTTQHIASLTEPFDLCIGLQIERNRGYRMKT 161
[44][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 159 bits (401), Expect(2) = 1e-74
Identities = 77/96 (80%), Positives = 83/96 (86%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHAEEE +NFE N+++ LPLFT + L K
Sbjct: 226 FIPFLHAEEEDINFEENKNRFPLPLFTFQNRLTNLK 261
Score = 145 bits (367), Expect(2) = 1e-74
Identities = 69/95 (72%), Positives = 82/95 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYSTIVGI+E VHEIL+NLKEI+L+SNLYG+ DASIC +GP YVTAQ+II PP V I
Sbjct: 70 VAHEYSTIVGIEESVHEILLNLKEIILRSNLYGVIDASICVRGPRYVTAQDIISPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIAN+TEPI LCI LQI+RDRGYR+ + N
Sbjct: 130 VDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANN 164
[45][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 152 bits (384), Expect(2) = 1e-74
Identities = 74/95 (77%), Positives = 82/95 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGI+E VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ+II PPSV I
Sbjct: 70 IPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIA++TEP+ CIGLQIE +RGYR+ T N
Sbjct: 130 VDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNN 164
Score = 152 bits (383), Expect(2) = 1e-74
Identities = 76/97 (78%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
Q GSY IDA+FMPVRNANHSIHSY NGNE QEILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QKGSYPIDAVFMPVRNANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNE-HKVTLPLFTCHDLLAKTK 7
FIPFLHAEE+ N ++N+ + VTLP FT HD K K
Sbjct: 226 FIPFLHAEEQDQNLKDNQKNGVTLPFFTFHDGFDKLK 262
[46][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 162 bits (410), Expect(2) = 2e-74
Identities = 78/96 (81%), Positives = 84/96 (87%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLHAEEE +NFE N++K TLP T D L+ K
Sbjct: 226 FVPFLHAEEEDINFEENKNKFTLPPLTFQDRLSNLK 261
Score = 141 bits (355), Expect(2) = 2e-74
Identities = 68/95 (71%), Positives = 80/95 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYST+VGI+E VHEIL NLKEIVL+SNLY IRDASIC +GP YVTAQ+II PP V I
Sbjct: 70 VPHEYSTVVGIEESVHEILFNLKEIVLRSNLYEIRDASICVRGPRYVTAQDIISPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQ+IAN+TEPI LCI L+I+RDRGYR+ + N
Sbjct: 130 VDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITN 164
[47][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 155 bits (392), Expect(2) = 3e-74
Identities = 74/97 (76%), Positives = 83/97 (85%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+DGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FEDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLH EEE L+ E+ EH + L + HD +AK +
Sbjct: 225 LFIPFLHMEEENLHLEDGEHTIPLSPLSFHDKVAKLR 261
Score = 147 bits (372), Expect(2) = 3e-74
Identities = 74/94 (78%), Positives = 80/94 (85%)
Frame = -2
Query: 577 HEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVD 398
HEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC KGPG VTA++IILPPSV IVD
Sbjct: 72 HEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGCVTAEDIILPPSVEIVD 131
Query: 397 NTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
NTQHIA +TEPI CIGLQIER+RGY + T NF
Sbjct: 132 NTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNF 165
[48][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 155 bits (391), Expect(2) = 4e-74
Identities = 76/99 (76%), Positives = 84/99 (84%), Gaps = 2/99 (2%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGN--EKQEILFLEIWTNGSLTPKEALYEASRNL 124
FQDGSY IDA+FMP+RNANHSIHSY NGN +KQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 166 FQDGSYPIDAVFMPIRNANHSIHSYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNL 225
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLFIPFLH EEE L+ +N+H V LP FT HD L K +
Sbjct: 226 IDLFIPFLHTEEENLHLADNQHMVPLPPFTFHDNLDKLR 264
Score = 147 bits (372), Expect(2) = 4e-74
Identities = 73/95 (76%), Positives = 82/95 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYST+VGIQE VH+ILMNLKEIVL+SNLYG DASIC +GPGYVTAQ+IILPP V +
Sbjct: 70 IPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEV 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VDNTQHIA++TEPI+L IGLQIER RGY I T N
Sbjct: 130 VDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNN 164
[49][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 158 bits (399), Expect(2) = 4e-74
Identities = 73/91 (80%), Positives = 82/91 (90%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGS TPKEALYEASRNLID
Sbjct: 165 YQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 25
LF+PFLHAEE+ +N E+N+++ T PLFT HD
Sbjct: 225 LFLPFLHAEEQDINVEDNQNRATAPLFTFHD 255
Score = 144 bits (364), Expect(2) = 4e-74
Identities = 71/96 (73%), Positives = 81/96 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E VHEILMNLKEIV +S+LYG R ASIC +GP YVTAQ+II PPSV I
Sbjct: 70 VPHEYSTIVGIEESVHEILMNLKEIVFRSHLYGTRGASICVRGPRYVTAQDIISPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD TQ+IA++TEPI LCI LQIERDRGYRI T N+
Sbjct: 130 VDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNY 165
[50][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 157 bits (396), Expect(2) = 4e-74
Identities = 75/99 (75%), Positives = 84/99 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE ENN+H+VTLPLF H+ L + K
Sbjct: 225 LFIPFLHVEEETFYLENNQHQVTLPLFPFHNRLVNLRKK 263
Score = 145 bits (367), Expect(2) = 4e-74
Identities = 69/96 (71%), Positives = 81/96 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA +TEPI LCIGL+IER+RGY + NF
Sbjct: 130 IDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNF 165
[51][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 157 bits (396), Expect(2) = 4e-74
Identities = 75/99 (75%), Positives = 84/99 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE ENN+H+VTLPLF H+ L + K
Sbjct: 225 LFIPFLHVEEETFYLENNQHQVTLPLFPFHNRLVNLRKK 263
Score = 145 bits (367), Expect(2) = 4e-74
Identities = 69/96 (71%), Positives = 81/96 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA +TEPI LCIGL+IER+RGY + NF
Sbjct: 130 IDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNF 165
[52][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 157 bits (396), Expect(2) = 5e-74
Identities = 74/99 (74%), Positives = 84/99 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+D SY IDA+FMPV+NANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE ENN+H+VTLP+F H+ L + K
Sbjct: 225 LFIPFLHVEEETFYLENNQHQVTLPVFPFHNKLVNLRQK 263
Score = 145 bits (366), Expect(2) = 5e-74
Identities = 70/96 (72%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL EIVLKSNLYG R+ IC +GPGY+TA++IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNPFICVQGPGYITARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA +TEPI LCIGL+IER+RGY + NF
Sbjct: 130 VDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNF 165
[53][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 157 bits (396), Expect(2) = 5e-74
Identities = 76/95 (80%), Positives = 84/95 (88%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
+GSY IDA+FMPVRNANHSIHSY NG+E+QEILFLEIWTNGSLTPKEAL+EASRNLIDLF
Sbjct: 158 NGSYPIDAVFMPVRNANHSIHSYGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLF 217
Query: 111 IPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IPFLHAEEE L+ E N+HK TLP T HD LAK +
Sbjct: 218 IPFLHAEEETLHLEYNQHKGTLPPLTFHDRLAKLR 252
Score = 145 bits (366), Expect(2) = 5e-74
Identities = 72/88 (81%), Positives = 77/88 (87%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ+II PPSV I
Sbjct: 70 IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGY 320
VDNTQHIA + EPI LCIGLQIER+RGY
Sbjct: 130 VDNTQHIARLMEPIDLCIGLQIERNRGY 157
[54][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 157 bits (396), Expect(2) = 7e-74
Identities = 75/99 (75%), Positives = 84/99 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE ENN+H+VTLPLF H+ L + K
Sbjct: 225 LFIPFLHVEEETFYLENNQHQVTLPLFPFHNRLVNLRKK 263
Score = 145 bits (365), Expect(2) = 7e-74
Identities = 69/96 (71%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TAQ+IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA + EPI LCIGL+IER+RGY + NF
Sbjct: 130 IDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNF 165
[55][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 156 bits (395), Expect(2) = 1e-73
Identities = 74/99 (74%), Positives = 85/99 (85%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+Q+GSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 YQNGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLHAEEE + E+N ++ +P FT HD LA T ++
Sbjct: 225 LFIPFLHAEEEGIRLEDNPNRFNIPFFTFHDGLANTNIR 263
Score = 144 bits (364), Expect(2) = 1e-73
Identities = 69/92 (75%), Positives = 80/92 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E +HEI MNLKEIVL+SNLYG R+ASIC +GP YVTAQ+II PPSV I
Sbjct: 70 VPHEYSTIVGIEESIHEIFMNLKEIVLRSNLYGTRNASICVRGPRYVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINT 308
VD TQHIA++TEPI LCI LQI+RDRGYR+ T
Sbjct: 130 VDTTQHIASLTEPIDLCIELQIQRDRGYRMKT 161
[56][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 157 bits (396), Expect(2) = 1e-73
Identities = 75/99 (75%), Positives = 84/99 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE ENN+H+VTLPLF H+ L + K
Sbjct: 225 LFIPFLHVEEETFYLENNQHQVTLPLFPFHNRLVNLRKK 263
Score = 144 bits (363), Expect(2) = 1e-73
Identities = 69/96 (71%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TAQ+IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA +TEPI LCI L+IER+RGY + NF
Sbjct: 130 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF 165
[57][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 151 bits (381), Expect(2) = 3e-73
Identities = 74/96 (77%), Positives = 82/96 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E VHEILMNLKEIVLKSNLYG RDASIC +GP YVTAQ+II PPSV I
Sbjct: 70 VPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD TQHIA++TEPI LCI LQIERDRGYR+ N+
Sbjct: 130 VDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNY 165
Score = 149 bits (375), Expect(2) = 3e-73
Identities = 73/99 (73%), Positives = 84/99 (84%), Gaps = 2/99 (2%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDGSY IDA+ MPVRNANHSIHSY +GNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 YQDGSYPIDAVSMPVRNANHSIHSYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEE--KLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLHAEE+ LN E+N+++ T+ FT HD L +
Sbjct: 225 LFIPFLHAEEQDIHLNLEDNQNRFTVSPFTLHDRLGNIR 263
[58][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 157 bits (396), Expect(2) = 3e-73
Identities = 75/98 (76%), Positives = 85/98 (86%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
+DGSY IDAIFMPVRNANHS+HSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 EDGSYPIDAIFMPVRNANHSVHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
FIPFLHAEE +++ E+N + V L LFT HD A T ++
Sbjct: 226 FIPFLHAEEREIHLEDNANGVPLALFTFHDEFAITNIR 263
Score = 142 bits (359), Expect(2) = 3e-73
Identities = 70/95 (73%), Positives = 80/95 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HE+STIVGI+E VHEI+MNLKEIVL+SNLYG DASIC +GP YVTAQ+IILPPSV I
Sbjct: 70 VPHEFSTIVGIEESVHEIVMNLKEIVLRSNLYGTLDASICIRGPRYVTAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIAN+TE + LCI LQIERDRGY + T N
Sbjct: 130 VDATQHIANLTERVDLCIKLQIERDRGYSMKTPHN 164
[59][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 152 bits (385), Expect(2) = 3e-73
Identities = 73/97 (75%), Positives = 82/97 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY IDA+FMP+RNAN+SIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLID
Sbjct: 165 FQDGSYPIDAVFMPIRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLH EE+ + ENN+H V L F HD L K +
Sbjct: 225 LFIPFLHMEEQNSHLENNQHTVPLAPFFFHDKLDKLR 261
Score = 147 bits (370), Expect(2) = 3e-73
Identities = 71/96 (73%), Positives = 81/96 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYSTI GIQE VHEILMNLKEIV +SNLYG DASIC +GPGYVTAQ+I+LPP V I
Sbjct: 70 VAHEYSTIAGIQESVHEILMNLKEIVFRSNLYGTCDASICVRGPGYVTAQDIVLPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA + EPI LCI L+IER+RGY I T +NF
Sbjct: 130 VDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNF 165
[60][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 155 bits (392), Expect(2) = 3e-73
Identities = 74/99 (74%), Positives = 84/99 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+D SY IDA+FMPV+NANHSIHSY NGN KQEILFLEIWTNGSLTPKEAL+EASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVQNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE + ENN+H+VTLPLF H+ L + K
Sbjct: 225 LFIPFLHVEEETFHLENNQHQVTLPLFPFHNRLVNLRKK 263
Score = 144 bits (363), Expect(2) = 3e-73
Identities = 70/96 (72%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA VTE I LCIGL+IER+RGY + NF
Sbjct: 130 VDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNF 165
[61][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 159 bits (401), Expect(2) = 4e-73
Identities = 75/97 (77%), Positives = 84/97 (86%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY ID +FMPVRN NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLID
Sbjct: 165 FQDGSYPIDVVFMPVRNVNHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFL+AE+E + E+N+ +VTLPLF HD L + +
Sbjct: 225 LFIPFLYAEKENFHLEDNQDRVTLPLFLFHDRLIELR 261
Score = 140 bits (353), Expect(2) = 4e-73
Identities = 72/96 (75%), Positives = 78/96 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGIQE VHEILMNLKEIVL+S YG DASIC +GPG VTAQ+II PP V I
Sbjct: 70 IPHEYSTIVGIQESVHEILMNLKEIVLRSTFYGTCDASICVRGPGGVTAQDIISPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD TQHIAN+TEPI L I LQ+ER+RGYRI T NF
Sbjct: 130 VDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNF 165
[62][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 154 bits (389), Expect(2) = 6e-73
Identities = 74/97 (76%), Positives = 84/97 (86%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDGSY IDA+ MPVRNANHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 YQDGSYPIDAVSMPVRNANHSIHSYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLHAEE+ + E+N ++ T+PLFT HD LA +
Sbjct: 225 LFIPFLHAEEQDIVLEDNPNRFTVPLFTFHDRLANIR 261
Score = 144 bits (364), Expect(2) = 6e-73
Identities = 71/96 (73%), Positives = 82/96 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ +EY TIVGI+E VHEILMNLKEIVL+S+LYG RDASIC +GP YVTAQ+II PPSV I
Sbjct: 70 VPNEYYTIVGIEESVHEILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQDIIPPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD TQHIA++TEPI LCI LQIERDRGYR+ T N+
Sbjct: 130 VDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNY 165
[63][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 159 bits (403), Expect(2) = 8e-73
Identities = 76/99 (76%), Positives = 85/99 (85%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNG+LTPKEAL+EASRNLI+
Sbjct: 165 FEDGSYPIDALFMPVQNANHSIHSYGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE ENN+HKVTLPLF H+ L K + K
Sbjct: 225 LFIPFLHVEEETFYLENNQHKVTLPLFPFHNRLVKLRKK 263
Score = 139 bits (349), Expect(2) = 8e-73
Identities = 67/96 (69%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL+EIVL+SNLYG +A IC +GPG +TA++IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGSITARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA +TEPI LCIGLQIER+RGY + +F
Sbjct: 130 IDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHF 165
[64][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 155 bits (393), Expect(2) = 8e-73
Identities = 74/99 (74%), Positives = 84/99 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE + ENN+H+VTLP F H+ L + K
Sbjct: 225 LFIPFLHVEEETVYLENNQHQVTLPFFPFHNRLVNLRKK 263
Score = 142 bits (359), Expect(2) = 8e-73
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA +TEPI LCI L+IER+RGY + NF
Sbjct: 130 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF 165
[65][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 159 bits (401), Expect(2) = 8e-73
Identities = 76/92 (82%), Positives = 83/92 (90%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+FMPVRNANHSI+SY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDL
Sbjct: 166 QDGSYPIDAVFMPVRNANHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLL 19
FIPFLHAEE+ +N E N+ + TLPLFT HD L
Sbjct: 226 FIPFLHAEEKDINLEENKSRFTLPLFTFHDKL 257
Score = 139 bits (351), Expect(2) = 8e-73
Identities = 68/95 (71%), Positives = 79/95 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E VHEILMNLKEIVL+SNLYG R+ASIC KGP +TA++IILP SV I
Sbjct: 70 VPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTREASICVKGPKTITAEDIILPASVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIA +TEP+ L IGLQI+RDRGYR+ N
Sbjct: 130 VDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNN 164
[66][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 155 bits (392), Expect(2) = 1e-72
Identities = 74/99 (74%), Positives = 83/99 (83%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE ENN+H+VTLP F H+ L + K
Sbjct: 225 LFIPFLHVEEETFYLENNQHQVTLPFFPFHNRLVNLRKK 263
Score = 142 bits (359), Expect(2) = 1e-72
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA +TEPI LCI L+IER+RGY + NF
Sbjct: 130 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF 165
[67][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 151 bits (382), Expect(2) = 1e-72
Identities = 75/95 (78%), Positives = 80/95 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEALYEASRNLID
Sbjct: 165 FQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEALYEASRNLID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
L IPFLH +EE LN E N+H V LP FT +D LAK
Sbjct: 223 LLIPFLHTKEENLNLEGNQHMVPLPPFTFYDKLAK 257
Score = 146 bits (368), Expect(2) = 1e-72
Identities = 72/96 (75%), Positives = 83/96 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
ISHEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+IILPP V I
Sbjct: 70 ISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA++TEPI+L IGLQIE++RGY I F
Sbjct: 130 LDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTF 165
[68][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 149 bits (376), Expect(2) = 2e-72
Identities = 74/95 (77%), Positives = 81/95 (85%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
L IPFLH +EE LN E+N+H V LP FT +D LAK
Sbjct: 223 LLIPFLHTKEENLNLEDNQHIVPLPPFTFYDKLAK 257
Score = 147 bits (372), Expect(2) = 2e-72
Identities = 73/96 (76%), Positives = 83/96 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
ISHEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+IILPP V I
Sbjct: 70 ISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTYEASICVRGPGYVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI+L IGLQIE++RGY I F
Sbjct: 130 VDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTF 165
[69][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 149 bits (377), Expect(2) = 3e-72
Identities = 73/95 (76%), Positives = 81/95 (85%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
L IPFLH +EE LN E+N+H + LP FT +D LAK
Sbjct: 223 LLIPFLHTKEENLNLEDNQHMIPLPPFTFYDKLAK 257
Score = 147 bits (370), Expect(2) = 3e-72
Identities = 73/96 (76%), Positives = 82/96 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
ISHEYSTI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+IILPP V I
Sbjct: 70 ISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA +TEPI+L IGLQIE++RGY I F
Sbjct: 130 VDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTF 165
[70][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 156 bits (395), Expect(2) = 4e-72
Identities = 76/96 (79%), Positives = 83/96 (86%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 164 QDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 223
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHAEE ++FE N+++ TLPLFT + L K
Sbjct: 224 FIPFLHAEEGDIHFEENKNRFTLPLFTFQNRLTNLK 259
Score = 139 bits (351), Expect(2) = 4e-72
Identities = 71/95 (74%), Positives = 79/95 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E VHEI +NLKEIVL NLYG+RDASIC +GP YVTAQ+II PPSV I
Sbjct: 70 VPHEYSTIVGIEESVHEIFINLKEIVL--NLYGVRDASICVRGPRYVTAQDIISPPSVEI 127
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIAN+TEPI L I LQI+RDRGYRIN N
Sbjct: 128 VDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNN 162
[71][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 153 bits (387), Expect(2) = 4e-72
Identities = 74/99 (74%), Positives = 82/99 (82%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+D SY IDA+FMPV+NANHSIHSY NGN KQEILFLEIWTNGSLTPKEAL+EASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVQNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE ENN+H VTLPLF H+ L + K
Sbjct: 225 LFIPFLHVEEETFYLENNQHHVTLPLFPFHNRLVNLRKK 263
Score = 142 bits (359), Expect(2) = 4e-72
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGARNAIICVQGPGYITARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA +TE I LCIGL+IER+RGY + L F
Sbjct: 130 IDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTF 165
[72][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 155 bits (392), Expect(2) = 5e-72
Identities = 75/99 (75%), Positives = 83/99 (83%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+DGSY IDA+FMPV+NANHSIHSY GNE QEILFLEIWTNG+LTPKEAL+EASRNLI+
Sbjct: 165 FEDGSYPIDALFMPVQNANHSIHSYGTGNENQEILFLEIWTNGNLTPKEALHEASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE ENNE KVTLPLF H+ L K + K
Sbjct: 225 LFIPFLHVEEETFYLENNEDKVTLPLFPFHNRLVKLRKK 263
Score = 140 bits (353), Expect(2) = 5e-72
Identities = 67/90 (74%), Positives = 79/90 (87%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL+EIVL+SNLYG +A IC +GPGY+TA++IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGYITARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+DNTQHIA +TEPI LCIGLQIER+RGY +
Sbjct: 130 MDNTQHIATLTEPIDLCIGLQIERNRGYSL 159
[73][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 155 bits (393), Expect(2) = 6e-72
Identities = 75/96 (78%), Positives = 85/96 (88%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYST+VGIQE VHEILMNLKEIVL+SNLYG DA+IC KGPGYVTAQ+II PP V I
Sbjct: 70 LPHEYSTLVGIQESVHEILMNLKEIVLRSNLYGTCDAAICVKGPGYVTAQDIISPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA++TEPI+LCIGLQIER+RGY I T KNF
Sbjct: 130 IDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNF 165
Score = 139 bits (351), Expect(2) = 6e-72
Identities = 65/82 (79%), Positives = 73/82 (89%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K FQDGSY IDA+FMPVRN NHSI+SY GN+K EILFLEIWTNGSLTPKEAL+EA+RNL
Sbjct: 163 KNFQDGSYPIDAVFMPVRNVNHSIYSYGTGNDKHEILFLEIWTNGSLTPKEALHEAARNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEH 58
IDLFIPFLH EEE L+ E+N+H
Sbjct: 223 IDLFIPFLHTEEENLDLEDNQH 244
[74][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 150 bits (380), Expect(2) = 1e-71
Identities = 71/90 (78%), Positives = 79/90 (87%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+L
Sbjct: 166 EDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHD 25
FIPFLH EEE ENN+H+VTLP F H+
Sbjct: 226 FIPFLHVEEETFYLENNQHQVTLPFFPFHN 255
Score = 144 bits (362), Expect(2) = 1e-71
Identities = 69/95 (72%), Positives = 80/95 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I
Sbjct: 70 IPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VDNTQHIA +TEPI LCIGL+IER+RGY + N
Sbjct: 130 VDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNN 164
[75][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 154 bits (388), Expect(2) = 2e-71
Identities = 73/99 (73%), Positives = 82/99 (82%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+D SY IDA+FMPV NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIN 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH EEE ENN+H+VTLP F H+ L + K
Sbjct: 225 LFIPFLHVEEETFYLENNQHQVTLPFFPFHNRLVNLRKK 263
Score = 140 bits (352), Expect(2) = 2e-71
Identities = 66/96 (68%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I H+YS I GIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPP+V I
Sbjct: 70 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQHIA +TEPI LCI L+IER+RGY + NF
Sbjct: 130 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF 165
[76][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 147 bits (371), Expect(2) = 2e-71
Identities = 73/95 (76%), Positives = 81/95 (85%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
L IPFLH +EE L+ E+N+H V LP FT +D LAK
Sbjct: 223 LLIPFLHTKEENLSLEDNQHIVPLPPFTFYDKLAK 257
Score = 146 bits (368), Expect(2) = 2e-71
Identities = 72/96 (75%), Positives = 83/96 (86%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
ISHEY+TI+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+IILPP V I
Sbjct: 70 ISHEYATIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI+L IGLQIE++RGY I F
Sbjct: 130 VDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTF 165
[77][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 148 bits (374), Expect(2) = 4e-71
Identities = 75/95 (78%), Positives = 82/95 (86%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI FKGPGYVTA++IILPP V IV
Sbjct: 71 SHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAEDIILPPHVEIV 130
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
D+TQHIA +TEPI LCIGL+IER+RGY I T NF
Sbjct: 131 DSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANF 165
Score = 144 bits (363), Expect(2) = 4e-71
Identities = 72/99 (72%), Positives = 82/99 (82%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH E+E L E+ +H + L FT + +AK K K
Sbjct: 223 LFIPFLHMEKENLPLEDADHTIPLSPFTVYYKVAKNKKK 261
[78][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 148 bits (374), Expect(2) = 4e-71
Identities = 75/95 (78%), Positives = 82/95 (86%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI FKGPGYVTA++IILPP V IV
Sbjct: 71 SHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAEDIILPPHVEIV 130
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
D+TQHIA +TEPI LCIGL+IER+RGY I T NF
Sbjct: 131 DSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANF 165
Score = 144 bits (363), Expect(2) = 4e-71
Identities = 72/99 (72%), Positives = 82/99 (82%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
LFIPFLH E+E L E+ +H + L FT + +AK K K
Sbjct: 223 LFIPFLHMEKENLPLEDADHTIPLSPFTVYYKVAKNKKK 261
[79][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 150 bits (378), Expect(2) = 5e-71
Identities = 73/97 (75%), Positives = 84/97 (86%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+DGSY IDA+FMPVRNANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FEDGSYPIDAVFMPVRNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLH EEE L+ E+ +H ++L FT +D +AK +
Sbjct: 223 LFIPFLHMEEENLHLEDADHTISLSPFTVYDKVAKLR 259
Score = 142 bits (358), Expect(2) = 5e-71
Identities = 72/95 (75%), Positives = 80/95 (84%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHEYSTI GIQE VHEI MNLKEIVL+SNLYG DASI KGPG+VTA++IILPP V IV
Sbjct: 71 SHEYSTIAGIQESVHEIFMNLKEIVLRSNLYGTCDASISIKGPGHVTAKDIILPPHVEIV 130
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
D+TQHIA +TEPI LCIGL+IER+RGY I T NF
Sbjct: 131 DSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNF 165
[80][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 158 bits (399), Expect(2) = 1e-70
Identities = 76/97 (78%), Positives = 83/97 (85%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLID
Sbjct: 165 YQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLHAEE+ +N E+N + T+P FT HD L K
Sbjct: 225 LFIPFLHAEEQDINIEDNLKRATVPFFTFHDGLDNMK 261
Score = 133 bits (334), Expect(2) = 1e-70
Identities = 65/96 (67%), Positives = 78/96 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E VHEILMNLK+IV +S+LYG DASIC +GP +VTAQ+II PPSV I
Sbjct: 70 VPHEYSTIVGIEESVHEILMNLKKIVFRSDLYGTLDASICVRGPRHVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD TQHIA +TEP+ LCI L+IER RGY + T N+
Sbjct: 130 VDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNY 165
[81][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 147 bits (370), Expect(2) = 2e-70
Identities = 71/88 (80%), Positives = 78/88 (88%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GIQE VHEILMN KEIVL+SNLYG DASIC +GPGYVTAQ+IILPP V I
Sbjct: 70 VPHEYSTIAGIQESVHEILMNFKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGY 320
VDNTQHIA++TEPI LCIGLQIER+RGY
Sbjct: 130 VDNTQHIASLTEPIDLCIGLQIERNRGY 157
Score = 144 bits (362), Expect(2) = 2e-70
Identities = 71/96 (73%), Positives = 76/96 (79%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+FMPVRNANHSIHSY +GNEK EILFLEIWTNGSLTPKEAL+EA RNLIDL
Sbjct: 166 QDGSYPIDAVFMPVRNANHSIHSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLH EEE E+N H V L T HD K +
Sbjct: 226 FIPFLHKEEETSPLEDNHHTVPLSPLTFHDKADKLR 261
[82][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 147 bits (371), Expect(2) = 2e-70
Identities = 71/95 (74%), Positives = 78/95 (82%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
DGSY ID + MPVRNANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLIDL
Sbjct: 167 DGSYPIDIVSMPVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLL 226
Query: 111 IPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IPFLHAEEE +NF+ NE++ LP F+ D K
Sbjct: 227 IPFLHAEEEDMNFKENENRWNLPPFSFQDKFTNFK 261
Score = 143 bits (361), Expect(2) = 2e-70
Identities = 67/92 (72%), Positives = 81/92 (88%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E VHEIL+NLK+IVL+SNLYG+R+ASIC +GP Y+TAQ+II PPSV I
Sbjct: 70 VLHEYSTIAGIEESVHEILLNLKDIVLRSNLYGVRNASICVRGPKYITAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINT 308
VD TQHIAN+TEPI LCI LQI+RDRGYR+ +
Sbjct: 130 VDTTQHIANLTEPINLCIELQIKRDRGYRMKS 161
[83][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 146 bits (369), Expect(2) = 8e-70
Identities = 71/95 (74%), Positives = 80/95 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II PPSV I
Sbjct: 70 VPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIAN+TEPI LCI LQI+RDRGY KN
Sbjct: 130 VDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKN 164
Score = 142 bits (357), Expect(2) = 8e-70
Identities = 71/96 (73%), Positives = 77/96 (80%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI+S N NEK EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVSMPVRNVNYSIYSCGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
FIPFLHAEEE NFE N+++ TLPL T L K
Sbjct: 226 FIPFLHAEEEDTNFEENKNRFTLPLLTFQKRLTNLK 261
[84][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 144 bits (363), Expect(2) = 4e-69
Identities = 72/101 (71%), Positives = 80/101 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
IDLF+PFLHAEEE +FE N+++ T PLFT L LK
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLNLK 263
Score = 142 bits (357), Expect(2) = 4e-69
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD +Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNY 165
[85][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 143 bits (361), Expect(2) = 4e-69
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPKYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ +KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNY 165
Score = 142 bits (359), Expect(2) = 4e-69
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[86][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 143 bits (360), Expect(2) = 5e-69
Identities = 70/97 (72%), Positives = 82/97 (84%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLH E+E L+ E+ + + L FT +D +AK +
Sbjct: 223 LFIPFLHIEKENLHLEDADRTIPLSPFTVYDKVAKLR 259
Score = 142 bits (359), Expect(2) = 5e-69
Identities = 71/95 (74%), Positives = 80/95 (84%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI KGPGYVTA++IILPP V +V
Sbjct: 71 SHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAEDIILPPHVEVV 130
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
D+TQHIA + EPI LCIGL+IER+RGY + T NF
Sbjct: 131 DSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANF 165
[87][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 144 bits (362), Expect(2) = 8e-69
Identities = 72/98 (73%), Positives = 81/98 (82%), Gaps = 2/98 (2%)
Frame = -3
Query: 294 QDGSYNI--DAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 121
QDGSY I +A+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EAS NLI
Sbjct: 166 QDGSYPIPIEAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLI 225
Query: 120 DLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
DLFIPFLH EEE +N E++ ++ TLP FT D LA +
Sbjct: 226 DLFIPFLHGEEEDINLEDSLNRGTLPFFTFQDKLANLR 263
Score = 141 bits (355), Expect(2) = 8e-69
Identities = 71/95 (74%), Positives = 80/95 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYSTIVGI+E VH+ILMNLKEIVL+SNLYG DASI +GP VTAQ+II PPSV +
Sbjct: 70 IPHEYSTIVGIEESVHQILMNLKEIVLRSNLYGTCDASIFVRGPRCVTAQDIISPPSVKM 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQHIA++TEPI LCIGLQIERDRGYR+ T N
Sbjct: 130 VDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNN 164
[88][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 143 bits (360), Expect(2) = 8e-69
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVXMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 8e-69
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[89][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 142 bits (359), Expect(2) = 8e-69
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (358), Expect(2) = 8e-69
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[90][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNPK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[91][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[92][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[93][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[94][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[95][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[96][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[97][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[98][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[99][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[100][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[101][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[102][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[103][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 146 bits (368), Expect(2) = 1e-68
Identities = 72/97 (74%), Positives = 83/97 (85%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F+DGSY IDA+FMPVRNANHSI+SY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FEDGSYPIDALFMPVRNANHSINSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLH EEE L+ E+ +H + L FT +D +AK +
Sbjct: 223 LFIPFLHMEEENLHLEDADHTIPLSPFTVYDKVAKLR 259
Score = 138 bits (348), Expect(2) = 1e-68
Identities = 71/95 (74%), Positives = 78/95 (82%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASI KGPGYVTA++IILPP V IV
Sbjct: 71 SHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAEDIILPPHVEIV 130
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
D+TQHIA +TEPI IGL+IER+ GY I T NF
Sbjct: 131 DSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANF 165
[104][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 141 bits (356), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[105][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 141 bits (356), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[106][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 142 bits (359), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 141 bits (356), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNY 165
[107][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 142 bits (358), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNLNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[108][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 142 bits (358), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFKKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[109][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 142 bits (358), Expect(2) = 1e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFKKRLTNLK 261
Score = 142 bits (357), Expect(2) = 1e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[110][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 142 bits (359), Expect(2) = 4e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 140 bits (352), Expect(2) = 4e-68
Identities = 67/96 (69%), Positives = 78/96 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVET 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[111][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 144 bits (363), Expect(2) = 5e-68
Identities = 72/101 (71%), Positives = 80/101 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 168 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 227
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLK 1
IDLF+PFLHAEEE +FE N+++ T PLFT L LK
Sbjct: 228 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLNLK 268
Score = 138 bits (347), Expect(2) = 5e-68
Identities = 67/96 (69%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASI KGP Y+TAQ+IILPPSV I
Sbjct: 75 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASISVKGPRYITAQDIILPPSVEI 134
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD +Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 135 VDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNY 170
[112][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 142 bits (359), Expect(2) = 5e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
Score = 139 bits (351), Expect(2) = 5e-68
Identities = 67/96 (69%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI L+I+RDRGY+ KN+
Sbjct: 130 VDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNY 165
[113][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 142 bits (359), Expect(2) = 5e-68
Identities = 71/99 (71%), Positives = 79/99 (79%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLK 261
Score = 139 bits (351), Expect(2) = 5e-68
Identities = 67/96 (69%), Positives = 78/96 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+ EPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNY 165
[114][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 142 bits (357), Expect(2) = 5e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
Score = 140 bits (353), Expect(2) = 5e-68
Identities = 71/99 (71%), Positives = 78/99 (78%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAESMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[115][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 142 bits (357), Expect(2) = 7e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
Score = 140 bits (352), Expect(2) = 7e-68
Identities = 70/99 (70%), Positives = 78/99 (78%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T P FT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPPFTFQKRLTNLK 261
[116][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 142 bits (358), Expect(2) = 9e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
Score = 139 bits (350), Expect(2) = 9e-68
Identities = 70/99 (70%), Positives = 78/99 (78%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NG EK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGIEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[117][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 142 bits (357), Expect(2) = 9e-68
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
Score = 139 bits (351), Expect(2) = 9e-68
Identities = 70/99 (70%), Positives = 78/99 (78%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T P FT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPPFTFKKRLTNLK 261
[118][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 143 bits (361), Expect(2) = 2e-67
Identities = 72/94 (76%), Positives = 78/94 (82%)
Frame = -3
Query: 300 IFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 121
IFQD SY IDA+FMPVRN NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 149 IFQDRSYPIDAVFMPVRNVNHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLI 206
Query: 120 DLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLL 19
DLFIPFLH EEE L ENN+ V+ F+ H+ L
Sbjct: 207 DLFIPFLHKEEENLPLENNQDTVSFSPFSFHEKL 240
Score = 137 bits (344), Expect(2) = 2e-67
Identities = 68/92 (73%), Positives = 75/92 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GIQE V EILMNLKEIVL+SNLYG ASIC +GPGYVTAQ+IILPP V I
Sbjct: 55 VPHEYSTIAGIQESVPEILMNLKEIVLRSNLYGTCGASICARGPGYVTAQDIILPPCVEI 114
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINT 308
DNTQHIA +TEPI CIGL+IER RGY I +
Sbjct: 115 GDNTQHIARLTEPISFCIGLEIERSRGYLIKS 146
[119][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 140 bits (354), Expect(2) = 3e-67
Identities = 68/95 (71%), Positives = 78/95 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQ IAN+ EPI CI LQI+RDRGY KN
Sbjct: 130 VDTTQPIANLREPIDFCIELQIKRDRGYHTELRKN 164
Score = 139 bits (349), Expect(2) = 3e-67
Identities = 66/87 (75%), Positives = 75/87 (86%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFT 34
F+PF+H EEE +FE N++++T PL T
Sbjct: 226 FLPFIHTEEEGTSFEENKNRLTPPLLT 252
[120][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 142 bits (358), Expect(2) = 3e-67
Identities = 71/99 (71%), Positives = 78/99 (78%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTGFEENKNRFTPPLFTFQKRLTNRK 261
Score = 137 bits (345), Expect(2) = 3e-67
Identities = 66/96 (68%), Positives = 78/96 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP +TAQ+IILPPSV +
Sbjct: 70 VPHEYSTIAGIEESVQEILVNLKEIVLRSNLYGVRDASICVKGPRCITAQDIILPPSVEV 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNY 165
[121][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 140 bits (353), Expect(2) = 4e-67
Identities = 67/95 (70%), Positives = 78/95 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQ IAN+ EP+ CI LQI+RDRGY KN
Sbjct: 130 VDTTQPIANLREPVDFCIELQIKRDRGYHTELRKN 164
Score = 139 bits (349), Expect(2) = 4e-67
Identities = 66/87 (75%), Positives = 75/87 (86%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFT 34
F+PF+H EEE +FE N++++T PL T
Sbjct: 226 FLPFIHTEEEGTSFEENKNRLTPPLLT 252
[122][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 141 bits (356), Expect(2) = 6e-67
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 130 VDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
Score = 137 bits (345), Expect(2) = 6e-67
Identities = 69/99 (69%), Positives = 77/99 (77%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY IDA+ M VRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMXVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PL T L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLLTFQKRLTNLK 261
[123][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 140 bits (354), Expect(2) = 6e-67
Identities = 68/94 (72%), Positives = 78/94 (82%)
Frame = -2
Query: 577 HEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVD 398
HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD
Sbjct: 72 HEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVD 131
Query: 397 NTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
Q IAN+TEPI CI LQI+RDRGY+ KN+
Sbjct: 132 TXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
Score = 138 bits (347), Expect(2) = 6e-67
Identities = 69/99 (69%), Positives = 77/99 (77%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDGSY I + MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIXXVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
IDLF+PFLHAEEE +FE N+++ T PLFT L K
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 261
[124][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 140 bits (352), Expect(2) = 8e-67
Identities = 68/95 (71%), Positives = 77/95 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEPI CI LQI+RDRGY KN
Sbjct: 130 VDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKN 164
Score = 138 bits (348), Expect(2) = 8e-67
Identities = 69/96 (71%), Positives = 76/96 (79%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLHAEEE +FE N+++ T PL T L K
Sbjct: 226 FLPFLHAEEEGTSFEENKNRFTPPLLTFQKRLTNLK 261
[125][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 142 bits (358), Expect(2) = 1e-66
Identities = 67/92 (72%), Positives = 79/92 (85%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E VHEILMNLKEI+++S+LYG RDA IC +GP YVTAQ+II PPSV I
Sbjct: 70 VPHEYSTIVGIEESVHEILMNLKEIIVRSDLYGTRDAFICVRGPKYVTAQDIISPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINT 308
VD TQHIA++TEPI CIGL+IER+RGYR T
Sbjct: 130 VDTTQHIASITEPINFCIGLEIERNRGYRTRT 161
Score = 135 bits (341), Expect(2) = 1e-66
Identities = 67/93 (72%), Positives = 76/93 (81%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QD SY IDA+ MPVRNAN+SI Y N NEKQEILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 164 QDASYPIDAVSMPVRNANYSIQCYGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 223
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLA 16
FIPFLHAEE L+ +++++ T P F H+ LA
Sbjct: 224 FIPFLHAEERDLHLDDDQNIFTAPFFPFHEGLA 256
[126][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 139 bits (351), Expect(2) = 1e-66
Identities = 67/87 (77%), Positives = 75/87 (86%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFT 34
F+PFLH EEE +FE N++++T PL T
Sbjct: 226 FLPFLHTEEEGTSFEENKNRLTPPLLT 252
Score = 138 bits (347), Expect(2) = 1e-66
Identities = 66/95 (69%), Positives = 77/95 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD TQ IAN+ EP+ CI LQI+RDR Y KN
Sbjct: 130 VDTTQPIANLREPVDFCIELQIKRDRAYHTELRKN 164
[127][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 146 bits (368), Expect(2) = 2e-66
Identities = 73/99 (73%), Positives = 81/99 (81%), Gaps = 2/99 (2%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLID
Sbjct: 165 YQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 224
Query: 117 LFIPFLHAEEEKL--NFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLHAEE+ + N E+N + ++P F D L K
Sbjct: 225 LFIPFLHAEEQDINRNMEDNLKRASVPFFAFDDGLDNIK 263
Score = 131 bits (329), Expect(2) = 2e-66
Identities = 63/96 (65%), Positives = 77/96 (80%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYST+VGI+E VHEILMNLK++V +S+LYG DASIC +GP +VTAQ+II PPSV I
Sbjct: 70 VPHEYSTVVGIEESVHEILMNLKKMVFRSDLYGTLDASICVRGPRHVTAQDIISPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VD TQHIA +TEP+ LCI L+IER RGY T N+
Sbjct: 130 VDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNY 165
[128][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 139 bits (349), Expect(2) = 5e-66
Identities = 67/95 (70%), Positives = 77/95 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTIVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+ EPI CI LQI+RDRGY KN
Sbjct: 130 VDTAQPIANLREPIDFCIELQIKRDRGYHTELRKN 164
Score = 137 bits (344), Expect(2) = 5e-66
Identities = 65/87 (74%), Positives = 75/87 (86%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFT 34
F+PF+H EEE +FE +++++T PL T
Sbjct: 226 FLPFIHTEEEGTSFEESKNRLTPPLLT 252
[129][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 139 bits (350), Expect(2) = 6e-66
Identities = 68/95 (71%), Positives = 77/95 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEPI CI LQI+RDRGY KN
Sbjct: 130 VDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKN 164
Score = 136 bits (342), Expect(2) = 6e-66
Identities = 68/96 (70%), Positives = 75/96 (78%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVSMPVRNVNYSIFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLHAEEE +FE N+++ T PL T L K
Sbjct: 226 FLPFLHAEEEGTSFEENKNRFTPPLLTFQKKLTNLK 261
[130][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 138 bits (347), Expect(2) = 1e-63
Identities = 69/89 (77%), Positives = 77/89 (86%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHEYS I GIQE VH+ILMNLKEIVLKSNLYG DAS+ KGP YVTAQ+IILPP V IV
Sbjct: 71 SHEYSIIAGIQESVHDILMNLKEIVLKSNLYGTCDASLYIKGPRYVTAQDIILPPHVEIV 130
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGYRI 314
D+TQHIA++TEPI LCIGL+IER+RGY I
Sbjct: 131 DSTQHIASLTEPINLCIGLKIERNRGYLI 159
Score = 130 bits (326), Expect(2) = 1e-63
Identities = 62/95 (65%), Positives = 79/95 (83%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQ+ +Y++DA+FMPV N NHSI+SY GNEK+EILFLEIWTNGSLTPKEAL+EA++NL+D
Sbjct: 165 FQNETYSLDAVFMPVLNVNHSIYSY--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMD 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
LFIPFL EEE LN E+ EH++ FT +D ++K
Sbjct: 223 LFIPFLQMEEENLNLEDAEHQIPFSPFTFYDKVSK 257
[131][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 132 bits (332), Expect(2) = 2e-62
Identities = 65/95 (68%), Positives = 76/95 (80%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV I
Sbjct: 50 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 109
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP+ I L+I+RDRGY KN
Sbjct: 110 VDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKN 144
Score = 131 bits (330), Expect(2) = 2e-62
Identities = 65/96 (67%), Positives = 73/96 (76%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 146 QDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDL 205
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 206 FLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 241
[132][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 133 bits (334), Expect(2) = 2e-62
Identities = 67/96 (69%), Positives = 78/96 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GIQE VHEILMNLKEIVL+SNLYG +ASIC KGPGYVTAQ+II PP V I
Sbjct: 70 VPHEYSTIRGIQESVHEILMNLKEIVLRSNLYGTCEASICVKGPGYVTAQDIISPPYVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
VDNTQHIA++TEPI+L I LQIE++R ++ F
Sbjct: 130 VDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTF 165
Score = 130 bits (327), Expect(2) = 2e-62
Identities = 67/97 (69%), Positives = 77/97 (79%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
FQDGSY I A+ MPVR+ N+SIHS +GN KQEILFLEIWTNGSLTPKEAL+EA RNLID
Sbjct: 165 FQDGSYAIGAVLMPVRHMNYSIHS--SGNGKQEILFLEIWTNGSLTPKEALHEACRNLID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLH EE N ENN+ ++ P FT +D L+K K
Sbjct: 223 LFIPFLHKEEG--NLENNQDRIPFPSFTFYDKLSKLK 257
[133][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 132 bits (331), Expect(2) = 5e-62
Identities = 65/96 (67%), Positives = 73/96 (76%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 146 QDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDL 205
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 206 FLPFLHTEEEGTRFQENQNRFTSPLLSFQKRLTNLK 241
Score = 130 bits (327), Expect(2) = 5e-62
Identities = 64/95 (67%), Positives = 75/95 (78%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 50 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEI 109
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 110 VDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKN 144
[134][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 131 bits (330), Expect(2) = 7e-62
Identities = 65/96 (67%), Positives = 73/96 (76%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 146 QDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDL 205
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 206 FLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 241
Score = 130 bits (327), Expect(2) = 7e-62
Identities = 64/95 (67%), Positives = 75/95 (78%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 50 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEI 109
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 110 VDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKN 144
[135][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 135 bits (341), Expect(2) = 9e-62
Identities = 69/87 (79%), Positives = 75/87 (86%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHEYSTI GIQE VHEILMNLKEIVL+SNLYG DASIC KGP +VTAQ+IILPP V IV
Sbjct: 71 SHEYSTIGGIQESVHEILMNLKEIVLRSNLYGTCDASICIKGPRHVTAQDIILPPHVQIV 130
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGY 320
DNTQHIA +TEPI IGL+IER+RGY
Sbjct: 131 DNTQHIAWLTEPIDFFIGLKIERNRGY 157
Score = 125 bits (315), Expect(2) = 9e-62
Identities = 63/95 (66%), Positives = 72/95 (75%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F DG Y IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EA+R LID
Sbjct: 165 FDDGIYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEAARILID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
FIPF H EEE L + EH + L ++ + K
Sbjct: 223 FFIPFFHMEEENLYLADAEHTIPLSSLIFYNKVTK 257
[136][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 131 bits (330), Expect(2) = 1e-61
Identities = 65/96 (67%), Positives = 73/96 (76%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 146 QDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDL 205
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 206 FLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 241
Score = 129 bits (325), Expect(2) = 1e-61
Identities = 64/95 (67%), Positives = 75/95 (78%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 50 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEI 109
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 110 VDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKN 144
[137][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 130 bits (327), Expect(2) = 3e-61
Identities = 64/96 (66%), Positives = 73/96 (76%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 275 QDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDL 334
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 335 FLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 370
Score = 129 bits (325), Expect(2) = 3e-61
Identities = 64/95 (67%), Positives = 74/95 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 179 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEI 238
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 239 VDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKN 273
[138][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 130 bits (327), Expect(2) = 3e-61
Identities = 64/96 (66%), Positives = 73/96 (76%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 254 QDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDL 313
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 314 FLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 349
Score = 129 bits (325), Expect(2) = 3e-61
Identities = 64/95 (67%), Positives = 74/95 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 158 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEI 217
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 218 VDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKN 252
[139][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 130 bits (327), Expect(2) = 3e-61
Identities = 64/96 (66%), Positives = 73/96 (76%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 226 FLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 261
Score = 129 bits (325), Expect(2) = 3e-61
Identities = 64/95 (67%), Positives = 74/95 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 130 VDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKN 164
[140][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 130 bits (327), Expect(2) = 3e-61
Identities = 64/96 (66%), Positives = 73/96 (76%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 166 QDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 226 FLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 261
Score = 129 bits (325), Expect(2) = 3e-61
Identities = 64/95 (67%), Positives = 74/95 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 70 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 130 VDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKN 164
[141][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 130 bits (327), Expect(2) = 3e-61
Identities = 64/96 (66%), Positives = 73/96 (76%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 146 QDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDL 205
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 206 FLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 241
Score = 129 bits (325), Expect(2) = 3e-61
Identities = 64/95 (67%), Positives = 74/95 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 50 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEI 109
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 110 VDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKN 144
[142][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 129 bits (325), Expect(2) = 6e-61
Identities = 64/95 (67%), Positives = 74/95 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 179 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEI 238
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 239 VDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKN 273
Score = 129 bits (324), Expect(2) = 6e-61
Identities = 63/96 (65%), Positives = 73/96 (76%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI + NGN + EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 275 QDGSYPIDAVSMPVRNVNYSIFACGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDL 334
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 335 FLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 370
[143][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 129 bits (325), Expect(2) = 1e-60
Identities = 64/95 (67%), Positives = 74/95 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 50 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEI 109
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 110 VDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKN 144
Score = 128 bits (321), Expect(2) = 1e-60
Identities = 63/96 (65%), Positives = 72/96 (75%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTP EALYEASRNLIDL
Sbjct: 146 QDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDL 205
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
F+PFLH EEE F+ N+++ T PL + L K
Sbjct: 206 FLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLK 241
[144][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 132 bits (332), Expect(2) = 2e-60
Identities = 68/87 (78%), Positives = 74/87 (85%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHEYSTI GIQE VHEILMNLKEIVL+SNLY DASIC KGP +VTAQ+IILPP V IV
Sbjct: 71 SHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQDIILPPHVQIV 130
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGY 320
DNTQHIA +TEPI IGL+IER+RGY
Sbjct: 131 DNTQHIAWLTEPIDFFIGLKIERNRGY 157
Score = 124 bits (312), Expect(2) = 2e-60
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+E++R LID
Sbjct: 165 FDDGSYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLP 43
FIPF EEE L + +H + LP
Sbjct: 223 FFIPFFQMEEENLYLADAKHTIXLP 247
[145][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 132 bits (332), Expect(2) = 2e-60
Identities = 68/87 (78%), Positives = 74/87 (85%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHEYSTI GIQE VHEILMNLKEIVL+SNLY DASIC KGP +VTAQ+IILPP V IV
Sbjct: 71 SHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQDIILPPHVQIV 130
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGY 320
DNTQHIA +TEPI IGL+IER+RGY
Sbjct: 131 DNTQHIAWLTEPIDFFIGLKIERNRGY 157
Score = 124 bits (312), Expect(2) = 2e-60
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
F DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+E++R LID
Sbjct: 165 FDDGSYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILID 222
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLP 43
FIPF EEE L + +H + LP
Sbjct: 223 FFIPFFQMEEENLYLADAKHTIPLP 247
[146][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 140 bits (353), Expect(2) = 5e-60
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEY+T+VGIQE V+EI+MNLKEIVL+SNLYG RDASIC +GP VTAQ+IILPPSV I
Sbjct: 70 IPHEYTTLVGIQESVYEIVMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSVAI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGY 320
VDNTQHI +TEPI C+GLQIER+RGY
Sbjct: 130 VDNTQHIVTLTEPIDFCVGLQIERNRGY 157
Score = 115 bits (288), Expect(2) = 5e-60
Identities = 56/81 (69%), Positives = 66/81 (81%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
D Y IDA+FMPV+N NHSIH+Y NG+ E+LF EIWTNGSLTPKEAL EASR LI+LF
Sbjct: 170 DRGYPIDAVFMPVKNVNHSIHAYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLF 227
Query: 111 IPFLHAEEEKLNFENNEHKVT 49
IPFLHAEEE + ENN+++ T
Sbjct: 228 IPFLHAEEENSHLENNQNQHT 248
[147][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 132 bits (332), Expect(2) = 8e-60
Identities = 65/88 (73%), Positives = 74/88 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEY+TIVGIQE ++EILMNLKEIVL+SNL G RDASIC +GP VTAQ+IILP S I
Sbjct: 70 IPHEYTTIVGIQESIYEILMNLKEIVLRSNLDGTRDASICVRGPRDVTAQDIILPNSAAI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGY 320
VDNTQHI +TEPI CIGLQI+R+RGY
Sbjct: 130 VDNTQHIVTLTEPIDFCIGLQIDRNRGY 157
Score = 122 bits (307), Expect(2) = 8e-60
Identities = 62/89 (69%), Positives = 70/89 (78%), Gaps = 2/89 (2%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
D Y IDA+F+PV+N NHSIHSY NG+ E+LFLEIWTNGSLTPKEAL EASR LI+LF
Sbjct: 170 DRGYPIDAVFLPVKNVNHSIHSYENGSH--EMLFLEIWTNGSLTPKEALREASRKLINLF 227
Query: 111 IPFLHAEEEKLNFEN--NEHKVTLPLFTC 31
IPFLHAEEE +FEN NEH LP+ C
Sbjct: 228 IPFLHAEEENFHFENNQNEHTDELPIDLC 256
[148][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 130 bits (326), Expect(2) = 1e-59
Identities = 62/96 (64%), Positives = 78/96 (81%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K +QDG + IDA+FMPVRNAN+SIHSY NGN+ QEILFLEIWTNGSL P+EALY ASRNL
Sbjct: 163 KNYQDGIFPIDAVFMPVRNANYSIHSYGNGNDIQEILFLEIWTNGSLAPREALYRASRNL 222
Query: 123 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLA 16
IDLFIPFL AEE+ ++ +N++ +P F+ ++ A
Sbjct: 223 IDLFIPFLRAEEQNIDGMDNQNGSNMPSFSFSNISA 258
Score = 124 bits (311), Expect(2) = 1e-59
Identities = 61/96 (63%), Positives = 78/96 (81%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYS I+GI+E VH+IL+NLKEIVL+S+ YG R+ASIC GP VTAQ+IILPPSV I
Sbjct: 70 VTHEYSAIIGIEESVHDILINLKEIVLRSDPYGTREASICIVGPRNVTAQDIILPPSVRI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA++T+ I I L IE+DRGYRI + KN+
Sbjct: 130 IDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNY 165
[149][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 135 bits (339), Expect(2) = 3e-59
Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEY+T VGIQE V+EI+MNLKEIVL+S+LYG RDASIC +GP VTAQ+IILPPSV I
Sbjct: 70 IPHEYTTRVGIQESVYEIVMNLKEIVLRSSLYGTRDASICVRGPRDVTAQDIILPPSVSI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGY--RINTLKN 299
VDNTQHI +TEPI+ C+ LQIER+RGY RI T N
Sbjct: 130 VDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNN 166
Score = 118 bits (295), Expect(2) = 3e-59
Identities = 57/76 (75%), Positives = 66/76 (86%)
Frame = -3
Query: 282 YNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF 103
Y IDA+FMPV+N NHSIHSY NG+ E+LF EIWTNGSLTPKEAL EASR LI+LFIPF
Sbjct: 173 YPIDAVFMPVKNVNHSIHSYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPF 230
Query: 102 LHAEEEKLNFENNEHK 55
LHAEEEK +FENN+++
Sbjct: 231 LHAEEEKPHFENNQNE 246
[150][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 135 bits (341), Expect(2) = 1e-58
Identities = 65/90 (72%), Positives = 76/90 (84%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEY+T+VGIQE ++EILMNLKEIVL+S+LYG RDASIC +GP VTAQ+IILP S I
Sbjct: 70 IPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTAQDIILPTSATI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
VDNTQHI +TEPI C+GLQIER+RGY I
Sbjct: 130 VDNTQHIVTITEPIDFCVGLQIERNRGYFI 159
Score = 115 bits (288), Expect(2) = 1e-58
Identities = 59/92 (64%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Frame = -3
Query: 300 IFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 121
+ D Y ID++FMPV+N NHSIHSY NG +LFLEIWTNGSLTPKEAL EASR L
Sbjct: 167 LHDDRGYPIDSVFMPVKNVNHSIHSYENGIHA--MLFLEIWTNGSLTPKEALREASRKLS 224
Query: 120 DLFIPFLHAEEEKLNFEN--NEHKVTLPLFTC 31
+LFIPFLHAEE+ +FEN NEH LP+ C
Sbjct: 225 NLFIPFLHAEEQNFHFENNQNEHTDELPIDFC 256
[151][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 129 bits (325), Expect(2) = 6e-58
Identities = 64/95 (67%), Positives = 74/95 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV I
Sbjct: 179 VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEI 238
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
VD Q IAN+TEP I L+I+RDRGY KN
Sbjct: 239 VDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKN 273
Score = 119 bits (298), Expect(2) = 6e-58
Identities = 58/74 (78%), Positives = 62/74 (83%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 275 QDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDL 334
Query: 114 FIPFLHAEEEKLNF 73
F+PFLH EEE F
Sbjct: 335 FLPFLHTEEEGTRF 348
[152][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 128 bits (321), Expect(2) = 7e-58
Identities = 61/97 (62%), Positives = 76/97 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
LFIPFLH EE+ ++ NN+ + F +L T+
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDTR 261
Score = 120 bits (301), Expect(2) = 7e-58
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[153][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 127 bits (319), Expect(2) = 7e-58
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 121 bits (303), Expect(2) = 7e-58
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNY 165
[154][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 127 bits (319), Expect(2) = 1e-57
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 120 bits (301), Expect(2) = 1e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[155][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 127 bits (319), Expect(2) = 1e-57
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 120 bits (301), Expect(2) = 1e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[156][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 127 bits (319), Expect(2) = 1e-57
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 120 bits (301), Expect(2) = 1e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPKNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[157][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 127 bits (319), Expect(2) = 1e-57
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 120 bits (301), Expect(2) = 1e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[158][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 129 bits (324), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN +P F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNRKGSNMPPFPLSHVLTDT 260
Score = 118 bits (295), Expect(2) = 2e-57
Identities = 59/96 (61%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YG+R+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGVREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I L+IE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNY 165
[159][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 127 bits (318), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F LL T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 120 bits (300), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[160][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 127 bits (318), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F LL T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 120 bits (300), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[161][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 127 bits (318), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F LL T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 120 bits (300), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[162][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 127 bits (318), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F LL T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 120 bits (300), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[163][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 127 bits (318), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F LL T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 120 bits (300), Expect(2) = 2e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[164][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 135 bits (340), Expect(2) = 2e-57
Identities = 65/90 (72%), Positives = 75/90 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEY+TI GI+E ++EILMNLKEIVL+SNLYG RDASIC +GP VTAQ+IILPPS I
Sbjct: 70 IPHEYTTIAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSTAI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
VDNTQHI +TEPI C+GL+IER RGY I
Sbjct: 130 VDNTQHIFTLTEPIDFCVGLKIERGRGYSI 159
Score = 111 bits (278), Expect(2) = 2e-57
Identities = 59/90 (65%), Positives = 69/90 (76%), Gaps = 3/90 (3%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
D +Y IDA+FMPVRN NHSIHSY G+ E+LFLEIWTNGSLTPKEAL EASR LI+L
Sbjct: 171 DSAYPIDAVFMPVRNVNHSIHSYERGSH--EMLFLEIWTNGSLTPKEALREASRKLINLL 228
Query: 111 IPFLHAEEEKLNF-ENNEHKVT--LPLFTC 31
+PFLHAEEE ENN+++ T LP+ C
Sbjct: 229 MPFLHAEEENFYLVENNQNQDTEELPIDLC 258
[165][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 127 bits (320), Expect(2) = 4e-57
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTK 7
L IPFLH EE+ ++ NN +P F +L T+
Sbjct: 225 LLIPFLHGEEQNIDGMNNRKGSNMPPFPLSHVLTDTR 261
Score = 118 bits (296), Expect(2) = 4e-57
Identities = 60/96 (62%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I L+IE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNY 165
[166][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 125 bits (315), Expect(2) = 4e-57
Identities = 60/96 (62%), Positives = 74/96 (77%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+ N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDVNYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 120 bits (301), Expect(2) = 4e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[167][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 125 bits (313), Expect(2) = 6e-57
Identities = 60/96 (62%), Positives = 74/96 (77%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ N + + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNKKKGSNMLPFPLSHVLTDT 260
Score = 120 bits (301), Expect(2) = 6e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[168][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 125 bits (313), Expect(2) = 6e-57
Identities = 60/96 (62%), Positives = 74/96 (77%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ N + + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNKKKGSNMLPFPLSHVLTDT 260
Score = 120 bits (301), Expect(2) = 6e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[169][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 125 bits (313), Expect(2) = 6e-57
Identities = 60/96 (62%), Positives = 74/96 (77%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ N + + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNKKKGSNMLPFPLSHVLTDT 260
Score = 120 bits (301), Expect(2) = 6e-57
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[170][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 131 bits (330), Expect(2) = 8e-57
Identities = 63/90 (70%), Positives = 75/90 (83%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEY+T+VGIQE ++EILMNLKEIVL+S+LYG RDASIC +GP VT+Q+IILP I
Sbjct: 70 IPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTSQDIILPTFATI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
VDNTQHI +TEPI C+GLQIER+RGY I
Sbjct: 130 VDNTQHIVTLTEPIDFCVGLQIERNRGYFI 159
Score = 113 bits (283), Expect(2) = 8e-57
Identities = 56/84 (66%), Positives = 66/84 (78%)
Frame = -3
Query: 300 IFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 121
+ D Y IDA+FMPV+N NHSIHSY NG +LFLEIWTNGSLTPKEAL ASR LI
Sbjct: 167 LHDDRGYPIDAVFMPVKNVNHSIHSYENGIHA--MLFLEIWTNGSLTPKEALRGASRKLI 224
Query: 120 DLFIPFLHAEEEKLNFENNEHKVT 49
+LFIPFLHAEE+ +FENN+++ T
Sbjct: 225 NLFIPFLHAEEQNCHFENNQNEHT 248
[171][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 125 bits (315), Expect(2) = 1e-56
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 118 bits (296), Expect(2) = 1e-56
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[172][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 125 bits (315), Expect(2) = 1e-56
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 118 bits (296), Expect(2) = 1e-56
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[173][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 125 bits (315), Expect(2) = 1e-56
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 118 bits (296), Expect(2) = 1e-56
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[174][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 123 bits (308), Expect(2) = 2e-56
Identities = 62/96 (64%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR ASIC GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIRGASICIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
Score = 120 bits (302), Expect(2) = 2e-56
Identities = 58/96 (60%), Positives = 73/96 (76%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EAL EASR LI+
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALSEASRILIE 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN +P F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNRKGSNMPPFPLSHVLTDT 260
[175][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 132 bits (331), Expect(2) = 2e-56
Identities = 63/90 (70%), Positives = 74/90 (82%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEY+T+ GI+E ++EILMNLKEIVL+SNLYG RDASIC +GP VTAQ+IILPPS I
Sbjct: 70 IPHEYTTMAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSTAI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
VDNTQHI +TEPI C+ L+IER RGY I
Sbjct: 130 VDNTQHIVTLTEPIDFCVELKIERGRGYSI 159
Score = 111 bits (278), Expect(2) = 2e-56
Identities = 58/85 (68%), Positives = 66/85 (77%), Gaps = 3/85 (3%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH 97
IDA+FMPVRN NHSI+SY G+ +EILFLEIWTNGSLTPKEAL EASR LI+LFIPFLH
Sbjct: 178 IDAVFMPVRNVNHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLH 235
Query: 96 AEEEK---LNFENNEHKVTLPLFTC 31
AEEE L N+H LP+ +C
Sbjct: 236 AEEENFYLLENNQNQHTEELPIDSC 260
[176][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 124 bits (311), Expect(2) = 4e-56
Identities = 59/96 (61%), Positives = 74/96 (77%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+ N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDVNYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 118 bits (296), Expect(2) = 4e-56
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[177][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 127 bits (318), Expect(2) = 5e-56
Identities = 61/96 (63%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F LL T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 115 bits (288), Expect(2) = 5e-56
Identities = 59/96 (61%), Positives = 74/96 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLK IVL+S+ YGI +ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKXIVLRSDSYGIXEASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[178][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 125 bits (315), Expect(2) = 5e-56
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 10
LFIPFLH EE+ ++ NN+ + F +L T
Sbjct: 225 LFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 116 bits (291), Expect(2) = 5e-56
Identities = 59/96 (61%), Positives = 74/96 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+IILPPSV
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKT 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I LQIE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNY 165
[179][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 122 bits (307), Expect(2) = 7e-56
Identities = 56/78 (71%), Positives = 68/78 (87%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENN 64
FIPFLH EE+ ++ NN
Sbjct: 225 FFIPFLHGEEQNIDGINN 242
Score = 119 bits (298), Expect(2) = 7e-56
Identities = 60/96 (62%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I L+IE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNY 165
[180][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 122 bits (306), Expect(2) = 9e-56
Identities = 56/78 (71%), Positives = 68/78 (87%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID
Sbjct: 165 YQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNFENN 64
L IPFLH EE+ ++ NN
Sbjct: 225 LLIPFLHGEEQNIDGMNN 242
Score = 119 bits (298), Expect(2) = 9e-56
Identities = 60/96 (62%), Positives = 76/96 (79%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 IKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D TQHIA +T+ I I L+IE++RGY I++ N+
Sbjct: 130 IDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNY 165
[181][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 118 bits (296), Expect(2) = 7e-53
Identities = 56/80 (70%), Positives = 69/80 (86%), Gaps = 1/80 (1%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
DG ++IDAIFMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLF
Sbjct: 167 DGYFSIDAIFMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLF 226
Query: 111 IPFLHAE-EEKLNFENNEHK 55
IPFLH E +E +N E+K
Sbjct: 227 IPFLHTEKKETINGLKTEYK 246
Score = 113 bits (283), Expect(2) = 7e-53
Identities = 56/90 (62%), Positives = 71/90 (78%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYSTIVGIQE H+IL+NLKEIVLKSN Y + A + GP +TAQ+IILPPSV I
Sbjct: 70 VTHEYSTIVGIQESAHDILINLKEIVLKSNSYETQKAFLSILGPKKITAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+D TQ+IA +T+PI L I L+I++D GYRI
Sbjct: 130 IDTTQYIATITKPIHLDIELEIDKDCGYRI 159
[182][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 115 bits (288), Expect(2) = 6e-52
Identities = 52/70 (74%), Positives = 64/70 (91%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
DG + IDAIFMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLF
Sbjct: 167 DGYFPIDAIFMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLF 226
Query: 111 IPFLHAEEEK 82
IPFLH E+++
Sbjct: 227 IPFLHPEKKE 236
Score = 113 bits (283), Expect(2) = 6e-52
Identities = 58/90 (64%), Positives = 71/90 (78%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYSTIVGIQE VH+IL+NLKEIVLKSN + A I GP +TAQ+IILPPSV I
Sbjct: 70 VTHEYSTIVGIQESVHDILINLKEIVLKSNSSETQKAFISILGPKKITAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+D TQ+IA +T+PI L I L+IE+D GYRI
Sbjct: 130 IDTTQYIATITKPIHLDIELEIEKDCGYRI 159
[183][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 117 bits (294), Expect(2) = 7e-52
Identities = 57/94 (60%), Positives = 73/94 (77%), Gaps = 2/94 (2%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
DG + IDAIFMP+RNAN+S+HS+ + N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLF
Sbjct: 167 DGHFPIDAIFMPIRNANYSVHSFEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLF 226
Query: 111 IPFLHAEEEKL--NFENNEHKVTLPLFTCHDLLA 16
IPFLHAE++++ EN + F+ LA
Sbjct: 227 IPFLHAEKKEIINGLENKYESNNMSYFSSFSPLA 260
Score = 110 bits (276), Expect(2) = 7e-52
Identities = 57/90 (63%), Positives = 70/90 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYSTI GIQE VH+IL+NLKEIVL+SN Y + A I GP VTAQ+IILPPSV I
Sbjct: 70 VTHEYSTIAGIQESVHDILINLKEIVLRSNSYETQKAFISILGPKKVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+D TQ+IA +T+ I L I L+IE+D GYRI
Sbjct: 130 IDTTQYIATLTKTIHLDIELEIEKDCGYRI 159
[184][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 120 bits (300), Expect(2) = 2e-51
Identities = 56/93 (60%), Positives = 75/93 (80%), Gaps = 1/93 (1%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
DG++ +DA+FMP+RN N+S+HS+ NGNE QEILFLEIWTNGS+TPKEALYEASR+LI+LF
Sbjct: 167 DGNFPVDAVFMPIRNVNYSVHSFENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLF 226
Query: 111 IPFLHAEEEKLNFE-NNEHKVTLPLFTCHDLLA 16
IPFLHAE+++ + N ++ + F+ L A
Sbjct: 227 IPFLHAEKKEFIYGLKNTYESNMSYFSSPSLSA 259
Score = 107 bits (266), Expect(2) = 2e-51
Identities = 55/90 (61%), Positives = 70/90 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYSTI+GIQE VH++L+NL EIVL+S+ Y + A I GP VTAQ+IILPPSV I
Sbjct: 70 VTHEYSTILGIQESVHDVLINLGEIVLRSDSYETQKAFISILGPKKVTAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+D TQ+IA VT+ I L I L+IE+D GYRI
Sbjct: 130 IDTTQYIATVTKAIHLDIELKIEKDFGYRI 159
[185][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 118 bits (295), Expect(2) = 1e-50
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
+DG ++ DA+ MPVRNAN+SIHSY NGNE QEILF EIWTNGSL P EALYEASRNLIDL
Sbjct: 166 RDGIFSTDAVSMPVRNANYSIHSYGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLF 37
FIPF+ AEE+ ++ +N + + LF
Sbjct: 226 FIPFMRAEEQNIDGIDNWNGYNMSLF 251
Score = 106 bits (265), Expect(2) = 1e-50
Identities = 56/95 (58%), Positives = 72/95 (75%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYS I+GI+E VH+I +NL+ IVL+S+ YGIR+ASI GP VTAQ+IILPPSV I
Sbjct: 70 MTHEYSAIMGIEESVHDISINLRGIVLQSDPYGIREASIYSVGPRDVTAQDIILPPSVRI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
+D TQHIA++ E I I QI +DRGYRI + N
Sbjct: 130 IDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNN 164
[186][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 119 bits (298), Expect(2) = 2e-50
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
IS+EYS I+GI+E +HEILMNLKEIVL+S+ YGIR+ SI GP VTAQ+I+LPPSV I
Sbjct: 70 ISNEYSVIIGIEESIHEILMNLKEIVLRSDAYGIREGSIHVVGPKKVTAQDIMLPPSVRI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFS 293
+D TQHIAN+ + I L I LQIE+ RGY I N++
Sbjct: 130 IDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYN 166
Score = 104 bits (260), Expect(2) = 2e-50
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = -3
Query: 282 YNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF 103
+ IDA F PV+N N+SIHSY + NE QEILFLEIWTNG L PKEALYEASRNLID F+PF
Sbjct: 180 FPIDAAFAPVQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPF 239
Query: 102 LHAEEEKLNFENN 64
L+A+EE + N+
Sbjct: 240 LNAKEENSDGTNS 252
[187][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 114 bits (286), Expect(2) = 2e-48
Identities = 52/78 (66%), Positives = 66/78 (84%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
Q G + IDA+FMP+R AN+S+HS+ N + QEILF+EIWT+GSLTPKEALYEASRNLIDL
Sbjct: 166 QAGEFFIDAVFMPIRKANYSVHSFGNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDL 225
Query: 114 FIPFLHAEEEKLNFENNE 61
F+PFLH EEE++ + +E
Sbjct: 226 FLPFLHTEEEEIISDRDE 243
Score = 102 bits (254), Expect(2) = 2e-48
Identities = 48/94 (51%), Positives = 71/94 (75%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI+GI+E +++IL+N KEIVL+S+ Y + A I GP +TA++I+LPPSV
Sbjct: 70 VIHEYSTIIGIEESINDILINFKEIVLRSDSYETQKAYISITGPKDITAEDILLPPSVQA 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 302
+D++QHIA +T+ I L I ++I++DRGYRI K
Sbjct: 130 IDDSQHIATITKDITLDIEIEIQKDRGYRIQDSK 163
[188][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 110 bits (275), Expect(2) = 3e-48
Identities = 54/90 (60%), Positives = 70/90 (77%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYSTI+GIQE VH+IL+NLKEIVLKSN Y ++ASI GP VTA++I+LP SV +
Sbjct: 70 VTHEYSTIMGIQESVHDILINLKEIVLKSNSYKTQEASISILGPKRVTAEDIVLPSSVEV 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+D TQHIA +T+ + I L I +DRGYRI
Sbjct: 130 IDATQHIATITKAVYFNIKLGIRKDRGYRI 159
Score = 106 bits (264), Expect(2) = 3e-48
Identities = 46/74 (62%), Positives = 64/74 (86%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
++DG++ ++A F P+RNAN+S+HS+ N EKQEILF+E+WTNGSLTPKEAL EAS++LI+
Sbjct: 165 YEDGNFAVNAAFTPIRNANYSVHSFENEKEKQEILFIEVWTNGSLTPKEALREASQSLIN 224
Query: 117 LFIPFLHAEEEKLN 76
LFIP LH ++E+ N
Sbjct: 225 LFIPLLHEKKEREN 238
[189][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 122 bits (306), Expect(2) = 3e-48
Identities = 54/77 (70%), Positives = 69/77 (89%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
DG +++DA+F P+RNAN+S+HS+ N NE QEILF+EIWTNGS+TPKEALYEASR+LIDLF
Sbjct: 170 DGYFSVDAVFTPIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLF 229
Query: 111 IPFLHAEEEKLNFENNE 61
IPFLHAE+E++ + NE
Sbjct: 230 IPFLHAEKEEVMHDKNE 246
Score = 94.4 bits (233), Expect(2) = 3e-48
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKS--NLYGIRDASICFKGPGYVTAQNIILPPSV 410
++HEYSTI+GIQE V +IL+NLKEIVLKS N + A + GP VTA++II PPSV
Sbjct: 71 VTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVTARDIIFPPSV 130
Query: 409 VIVDNTQHIANVTEPIQLCIGLQIERDRGYR 317
++D TQ+IA +T+ I L I L+IE+D GYR
Sbjct: 131 EVIDTTQYIATLTKAIHLDIELKIEKDCGYR 161
[190][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 114 bits (285), Expect(2) = 3e-48
Identities = 54/77 (70%), Positives = 68/77 (88%), Gaps = 1/77 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH 97
IDAIFMP+RNAN+S+HS+ N N+ QE+LF+EIWTNGS+TPK+ALYEASR+LIDLFIPFLH
Sbjct: 172 IDAIFMPIRNANYSVHSFENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLH 231
Query: 96 AE-EEKLNFENNEHKVT 49
AE E +N NE+K++
Sbjct: 232 AERREIINELENEYKLS 248
Score = 102 bits (253), Expect(2) = 3e-48
Identities = 53/90 (58%), Positives = 67/90 (74%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYSTI GIQE VH+I +N KEIVL+SN + A I GP +TAQ+IILPPSV I
Sbjct: 70 VTHEYSTIAGIQESVHDISINSKEIVLESNSSETQKAFISILGPKKITAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+D Q+IA +T+ IQL I L+IE+D GYRI
Sbjct: 130 IDGKQYIATLTKAIQLDIELEIEKDYGYRI 159
[191][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 118 bits (296), Expect(2) = 5e-47
Identities = 52/71 (73%), Positives = 66/71 (92%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
DG +++DA+F P+RNAN+S+HS+ N NE QEILF+EIWTNGS+TPKEALYEASR+LIDLF
Sbjct: 170 DGYFSVDAVFTPIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLF 229
Query: 111 IPFLHAEEEKL 79
IPFLHAE+E++
Sbjct: 230 IPFLHAEKEEV 240
Score = 94.0 bits (232), Expect(2) = 5e-47
Identities = 50/91 (54%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKS--NLYGIRDASICFKGPGYVTAQNIILPPSV 410
++HEYSTI+GIQE V +IL+NLKEIVLKS N + A + GP VTA++I+ PPSV
Sbjct: 71 VTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVTARDIVFPPSV 130
Query: 409 VIVDNTQHIANVTEPIQLCIGLQIERDRGYR 317
++D TQ+IA +T+ I L I L+IE+D GYR
Sbjct: 131 EVIDTTQYIATLTKAIHLDIELKIEKDCGYR 161
[192][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 101 bits (251), Expect(2) = 5e-44
Identities = 49/96 (51%), Positives = 70/96 (72%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYST+ GIQE +H+IL+NLKEIVL+S+ G + A + GP VTA +I LPPSV +
Sbjct: 70 VAHEYSTVAGIQETIHDILVNLKEIVLRSDSDGNQKAILSVTGPKRVTAGDISLPPSVKV 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D++Q+I +T+PI + I L IE D GYRI +L +
Sbjct: 130 IDDSQYIVTITQPISVNIELNIECDCGYRIESLNEY 165
Score = 101 bits (251), Expect(2) = 5e-44
Identities = 45/89 (50%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
++DG + +DA+FMPVRN N+S+H + +G E +EILF+E+WTNGSLTP EA+ +AS++ ID
Sbjct: 165 YRDGEFPVDAVFMPVRNVNYSVHPFGSGKEMREILFIEVWTNGSLTPTEAISKASKSSID 224
Query: 117 LFIPFLHAEEEKL-NFENNEHKVTLPLFT 34
L PFLH + E + +FE+N +L F+
Sbjct: 225 LLSPFLHTKHEDIPDFESNRDSSSLMKFS 253
[193][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 102 bits (253), Expect(2) = 6e-44
Identities = 53/94 (56%), Positives = 69/94 (73%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYST+VGI+E +H+IL+NLKEIVL+S+ Y + ASI GP VTA +I+LP SV I
Sbjct: 70 VVHEYSTLVGIKESIHDILINLKEIVLQSDSYETQKASISILGPRDVTAGDILLPTSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 302
+D +QHIA +T I L + L+IERD GYR LK
Sbjct: 130 IDASQHIATITTAIPLDVELRIERDCGYRTLNLK 163
Score = 100 bits (248), Expect(2) = 6e-44
Identities = 50/80 (62%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
Q G + IDA+F P+RNAN+SIHS+ + N+ +EILFLE+WTNGSLTP AL EASR+LIDL
Sbjct: 166 QSGEFFIDALFTPIRNANYSIHSFESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDL 225
Query: 114 FIPFLHAEEEK--LNFENNE 61
FI FL+ E+E+ ENNE
Sbjct: 226 FIIFLNMEKEESIKEIENNE 245
[194][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 110 bits (274), Expect(2) = 2e-43
Identities = 48/75 (64%), Positives = 67/75 (89%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+Q+G + +DA+FMP+RNAN+S+HS+ + + +EILFLEIWT+GSLTPKEALYEASRNLID
Sbjct: 165 YQEGLFPVDAVFMPIRNANYSVHSFESEKKIKEILFLEIWTDGSLTPKEALYEASRNLID 224
Query: 117 LFIPFLHAEEEKLNF 73
LFIP +++E+++ NF
Sbjct: 225 LFIPLINSEKKEKNF 239
Score = 90.1 bits (222), Expect(2) = 2e-43
Identities = 47/96 (48%), Positives = 65/96 (67%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI+G+QE +H+IL+NLKEIVLKS + + A I GP +TAQ+I P + I
Sbjct: 70 VKHEYSTIIGLQESIHDILINLKEIVLKSESFEPQKAYISVLGPKKITAQDIKGPSCIKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+ Q+IA + + I L I L IE+DRGYRI L+ +
Sbjct: 130 MIIAQYIATLNKDILLEIELNIEKDRGYRIENLQKY 165
[195][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 109 bits (273), Expect(2) = 4e-43
Identities = 54/88 (61%), Positives = 69/88 (78%)
Frame = -2
Query: 577 HEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVD 398
H+YST+ GI+E VH+IL+NLKEIVLKS LYGI ASIC GP VTAQ+IILP S+ I+D
Sbjct: 73 HDYSTMSGIKESVHDILLNLKEIVLKSELYGIHKASICTVGPRNVTAQDIILPSSIKIID 132
Query: 397 NTQHIANVTEPIQLCIGLQIERDRGYRI 314
TQHIA++T+ + + L IER++GY I
Sbjct: 133 GTQHIASLTKSVPFNVMLTIERNQGYAI 160
Score = 89.7 bits (221), Expect(2) = 4e-43
Identities = 47/94 (50%), Positives = 59/94 (62%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
++G + IDA MPVRN N SIHSY + N+ +E+L EIWTNG LTP+EA YEA LIDL
Sbjct: 169 KNGLFPIDAPCMPVRNVNFSIHSYKSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDL 228
Query: 114 FIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAK 13
+P LH EE+ + LP+ T D L K
Sbjct: 229 IVPLLHMEED---MNGAKDFFALPILTRMDKLGK 259
[196][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 112 bits (281), Expect(2) = 8e-41
Identities = 55/94 (58%), Positives = 74/94 (78%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS+I+GI+E VH+ILMNLK+IVL+S LYGI +ASIC GP VTAQ+IILP S+ I
Sbjct: 71 ILHEYSSIIGIKESVHDILMNLKQIVLRSELYGIHEASICTVGPKNVTAQDIILPSSIQI 130
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 302
+D+TQHIA++T+ I + L+IE+ + Y I +K
Sbjct: 131 IDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMK 164
Score = 79.0 bits (193), Expect(2) = 8e-41
Identities = 38/80 (47%), Positives = 54/80 (67%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
+D + ID + +PV+N N SIHSY + + QE+L EIWTNG LTP+E +YEA +L+DL
Sbjct: 167 KDIFFPIDGVSLPVQNVNFSIHSYKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDL 226
Query: 114 FIPFLHAEEEKLNFENNEHK 55
IP L E+ N +N++ K
Sbjct: 227 IIPLLCVEQ---NIKNSQKK 243
[197][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 100 bits (248), Expect(2) = 1e-40
Identities = 46/79 (58%), Positives = 63/79 (79%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
+++G + IDA+FMP+RNAN+S+HS+ + + +EIL LEIWTNGSLTP++ALYEASRNLID
Sbjct: 166 YREGFFPIDAVFMPIRNANYSVHSFGSREKTKEILLLEIWTNGSLTPEKALYEASRNLID 225
Query: 117 LFIPFLHAEEEKLNFENNE 61
LFIP ++ E+ N E
Sbjct: 226 LFIPSMNPGGEEKNSGTKE 244
Score = 90.9 bits (224), Expect(2) = 1e-40
Identities = 45/96 (46%), Positives = 65/96 (67%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEYS I GI+E +H+IL+NLKEI+L+S+ + A IC GP VTA++I + +
Sbjct: 71 IKHEYSAINGIRESIHDILINLKEIILRSDSPEPQKAYICVSGPSEVTARDIQGSSLIHV 130
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+DNTQ++A +T I L I L IE+DRGYR+ + +
Sbjct: 131 IDNTQYVATITGKISLDIELDIEKDRGYRMENSRKY 166
[198][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 98.6 bits (244), Expect(2) = 1e-39
Identities = 46/89 (51%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 118
++DG + +DA+ MPVRN N+S+H + +G E +EI F+EIWTNGS TP EAL EAS+NLID
Sbjct: 165 YRDGEFPVDAVPMPVRNVNYSVHPFGSGREMREISFIEIWTNGSPTPNEALCEASKNLID 224
Query: 117 LFIPFLHAEEEKL-NFENNEHKVTLPLFT 34
L IPFLH + E + +FE+ + L + +
Sbjct: 225 LLIPFLHMKHEDVPHFEDEQDSSDLTILS 253
Score = 89.4 bits (220), Expect(2) = 1e-39
Identities = 44/96 (45%), Positives = 64/96 (66%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ HEYSTI GIQE +H+I +NLKE V +S+ ++A + GP VTA + LPPSV I
Sbjct: 70 VIHEYSTITGIQETIHDISVNLKETVPRSDSNDSKEAFLSVTGPKRVTAGDTSLPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 296
+D++Q+I +T+PI + I +IE+D GYRI +
Sbjct: 130 IDDSQYIVTITQPISVNIESRIEKDCGYRIEEFNGY 165
[199][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 97.4 bits (241), Expect(2) = 2e-39
Identities = 48/94 (51%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLY-GIRDASICFKGPGYVTAQNIILPPSVV 407
+ HEYSTI G+QE +H++L+NLKEIVL+ + I++A + GP VTA ++ LPP V
Sbjct: 70 VVHEYSTITGLQETIHDVLVNLKEIVLRGDSKEDIQEAFLSVTGPKEVTAGDLSLPPGVE 129
Query: 406 IVDNTQHIANVTEPIQLCIGLQIERDRGYRINTL 305
+DN+Q+IA +T+PI L I L+IE+D GYRI L
Sbjct: 130 AIDNSQYIATITQPISLTIELEIEKDCGYRIENL 163
Score = 89.7 bits (221), Expect(2) = 2e-39
Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = -3
Query: 288 GSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFI 109
G + IDA+FMPVRN N+SIH + +G QEILF+EIWTNGSLTP EAL +AS L+DL
Sbjct: 169 GQFPIDAVFMPVRNVNYSIHLFGSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLT 228
Query: 108 PFLHAEEEKLN-FENNEHKVTL 46
FL+ ++ FEN E + L
Sbjct: 229 TFLYVRGGDVSLFENGEDSLDL 250
[200][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 94.7 bits (234), Expect(2) = 2e-39
Identities = 50/89 (56%), Positives = 64/89 (71%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I+HEYST+ GIQE VH+IL+N KEIVLKS + A I GP VTAQ+I LP SV +
Sbjct: 73 ITHEYSTMDGIQESVHDILINSKEIVLKSKSSEAQKAFISIVGPRRVTAQDIELPTSVEV 132
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
+D QHIA +T+ ++L I L+IE+D GYR
Sbjct: 133 IDPMQHIATITKKVKLNIELKIEKDSGYR 161
Score = 92.0 bits (227), Expect(2) = 2e-39
Identities = 39/81 (48%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEK--QEILFLEIWTNGSLTPKEALYEASRNL 124
++DG++ +DA+F P+R+ N+SIH + + ++ +E+L EIW+NGS+TP+EA+YEASR+
Sbjct: 168 YKDGNFTVDAVFTPIRSVNYSIHCFESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSS 227
Query: 123 IDLFIPFLHAEEEKLNFENNE 61
I+LF+PFL AE+EK +F+ +
Sbjct: 228 INLFLPFLQAEKEKEDFKGED 248
[201][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 100 bits (249), Expect(2) = 1e-36
Identities = 49/81 (60%), Positives = 66/81 (81%), Gaps = 2/81 (2%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
DG + ID++FMPVRNAN+S+HSY + + QEILFLEIWTNGS+TP+EAL+EA+R LIDL
Sbjct: 279 DGRFYIDSVFMPVRNANYSVHSYESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDL 338
Query: 114 FIPFLHAEEEKL-NFENNEHK 55
F+PFLH +++++ N HK
Sbjct: 339 FLPFLHPKKKEVTNSATKMHK 359
Score = 77.4 bits (189), Expect(2) = 1e-36
Identities = 39/90 (43%), Positives = 61/90 (67%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ EY+ + G++E +IL+NLKE+V++S+ + A I GPG VTA +I+LPPS+ +
Sbjct: 182 VKSEYAAMKGVEETPMDILVNLKELVIRSDSDEPQKAIISAIGPGPVTAGDIVLPPSLEV 241
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
D TQHIA +T+ + L I L +E+ GYR+
Sbjct: 242 TDPTQHIAYLTKEVSLDIELDVEKGCGYRM 271
[202][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 98.6 bits (244), Expect(2) = 6e-35
Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGI-RDASICFKGPGYVTAQNIILPPSVV 407
I+HEY+ I G++E VH+ILMNLKEIVLK+N + ++A I GP VTAQ+I+LPPSV
Sbjct: 70 INHEYTAIAGVRESVHDILMNLKEIVLKTNPFSAAQEAHIPIVGPRKVTAQDIVLPPSVG 129
Query: 406 IVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFSRWKL 281
+D TQHIA +T I IGL++ER G+R + + + L
Sbjct: 130 TMDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSL 171
Score = 73.6 bits (179), Expect(2) = 6e-35
Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVN--GNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
+Q GS DA+FMP+R+AN+SIH + G +E+L LE T+GS TP+EA+YEASRNL
Sbjct: 166 YQKGSLPPDAVFMPIRHANYSIHRLGSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNL 225
Query: 123 IDLFIPFLH 97
+LF PF H
Sbjct: 226 ANLFSPFPH 234
[203][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 87.4 bits (215), Expect(2) = 1e-32
Identities = 42/85 (49%), Positives = 60/85 (70%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHEYST+ GI+E +H+IL+NLK+IV KS+ ++ + F GPG VTAQ+I LPP V +V
Sbjct: 68 SHEYSTLKGIRESIHDILLNLKDIVFKSDTLERQEGILLFNGPGIVTAQHIKLPPVVQVV 127
Query: 400 DNTQHIANVTEPIQLCIGLQIERDR 326
DNTQ+IA + P + I + +E +
Sbjct: 128 DNTQYIARLEMPTSIEIHITLENTK 152
Score = 77.0 bits (188), Expect(2) = 1e-32
Identities = 39/78 (50%), Positives = 51/78 (65%)
Frame = -3
Query: 288 GSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFI 109
G + +DA PVRN N+SIHS G+ +QE+L LE+WTNGSLTP+E + +AS+NL DL
Sbjct: 165 GRFILDAALKPVRNMNYSIHSLGEGDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLK 224
Query: 108 PFLHAEEEKLNFENNEHK 55
P L E + N HK
Sbjct: 225 PLLKV-ERYFQAKQNIHK 241
[204][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 79.3 bits (194), Expect(2) = 8e-31
Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 7/82 (8%)
Frame = -3
Query: 285 SYNIDAIFMPVRNANHSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFI 109
S++IDAIFMP+RN N+SIH G+ K E+L LEIWTNGS+TPKEA ++AS ++++F+
Sbjct: 166 SFSIDAIFMPIRNVNYSIHPVEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFL 225
Query: 108 PFLHAEEEKL------NFENNE 61
++ + ++ NFE E
Sbjct: 226 SLSNSSDNQIQEKSTKNFEEKE 247
Score = 79.0 bits (193), Expect(2) = 8e-31
Identities = 39/98 (39%), Positives = 59/98 (60%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEY T+ G++E + +IL+NLKEIV K + I KGP +TA +I + P + I
Sbjct: 67 IKHEYCTLTGVRESIQDILLNLKEIVFKGVCDKTQKGFIFVKGPKKITASDIQIEPCIEI 126
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFSR 290
+D+ Q IA++TEPI + L IE+ G+R+ S+
Sbjct: 127 LDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISK 164
[205][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 80.5 bits (197), Expect(2) = 1e-30
Identities = 37/67 (55%), Positives = 54/67 (80%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
+G + ID++FMPV AN+S+HS+ + +EILFLEI+TNGS++P+EAL EA+R+LIDL
Sbjct: 355 NGRFYIDSVFMPVVQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLL 414
Query: 111 IPFLHAE 91
+P L +E
Sbjct: 415 LPLLESE 421
Score = 77.0 bits (188), Expect(2) = 1e-30
Identities = 38/90 (42%), Positives = 59/90 (65%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEY + GIQE V +IL+N++++ + SN + + A I GP V A +I+ PPS+V+
Sbjct: 258 IVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVV 317
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
D +Q+IA VT I + +++E+D GYRI
Sbjct: 318 PDPSQNIALVTAAIPFNVEIEVEKDVGYRI 347
[206][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 80.5 bits (197), Expect(2) = 1e-30
Identities = 37/67 (55%), Positives = 54/67 (80%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
+G + ID++FMPV AN+S+HS+ + +EILFLEI+TNGS++P+EAL EA+R+LIDL
Sbjct: 268 NGRFYIDSVFMPVVQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLL 327
Query: 111 IPFLHAE 91
+P L +E
Sbjct: 328 LPLLESE 334
Score = 77.0 bits (188), Expect(2) = 1e-30
Identities = 38/90 (42%), Positives = 59/90 (65%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HEY + GIQE V +IL+N++++ + SN + + A I GP V A +I+ PPS+V+
Sbjct: 171 IVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVV 230
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
D +Q+IA VT I + +++E+D GYRI
Sbjct: 231 PDPSQNIALVTAAIPFNVEIEVEKDVGYRI 260
[207][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 94.4 bits (233), Expect(2) = 2e-30
Identities = 47/94 (50%), Positives = 68/94 (72%)
Frame = -2
Query: 568 STIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQ 389
STI+GI+E VH+I+MNL+EIV + L+GI A I GP VTAQ+IILPP + IVD TQ
Sbjct: 79 STILGIEESVHDIIMNLREIVFRCELHGIHKAYIYTVGPKNVTAQDIILPPFIQIVDGTQ 138
Query: 388 HIANVTEPIQLCIGLQIERDRGYRINTLKNFSRW 287
HIA++T+PI L + L+IE++ G ++ +++
Sbjct: 139 HIASITKPIHLHVTLKIEKNWGETTESIHPITKY 172
Score = 62.4 bits (150), Expect(2) = 2e-30
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = -3
Query: 273 DAIFMPVRNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
+ +MPVR+ ++++ Y + + +IL E+WTNG LTPKEALYEA LIDL IP L
Sbjct: 180 EIFYMPVRSVTYNVYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLL 239
Query: 99 HAEEEKLNFENNEHKVTLPL 40
+ L+ E + K ++PL
Sbjct: 240 --DVPLLHVEGSGVKESIPL 257
[208][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 77.0 bits (188), Expect(2) = 3e-29
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
+HEYST+ GIQE +H+IL+NLK++++K+ + + I GP VTA +I L ++ I
Sbjct: 73 AHEYSTLEGIQESIHDILLNLKQVIIKNKICEFQKCLISIIGPKKVTAADIELSQNITIS 132
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+ HIA +T+PI+ + L I + RGY I
Sbjct: 133 NPYHHIATITKPIRFQVELIINKGRGYLI 161
Score = 75.9 bits (185), Expect(2) = 3e-29
Identities = 37/70 (52%), Positives = 49/70 (70%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
QDG + +DA+F PVRN N SIH+ E+QE L LEIWTNG++TP +AL + S NLI L
Sbjct: 168 QDGYFPVDALFNPVRNVNFSIHNLA---EQQEALILEIWTNGAITPLDALRQGSENLIHL 224
Query: 114 FIPFLHAEEE 85
F+P E++
Sbjct: 225 FLPPFGLEDD 234
[209][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 77.0 bits (188), Expect(2) = 3e-29
Identities = 32/72 (44%), Positives = 52/72 (72%)
Frame = -3
Query: 294 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
+ G + +D +F+P+R+ N+SIHS+ + +E L +E+WTNGS+ PKEA+ EAS NL++L
Sbjct: 166 KQGFFLVDPVFIPIRSVNYSIHSFEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNL 225
Query: 114 FIPFLHAEEEKL 79
F P + E ++L
Sbjct: 226 FTPLVSQEYQQL 237
Score = 75.9 bits (185), Expect(2) = 3e-29
Identities = 39/93 (41%), Positives = 61/93 (65%)
Frame = -2
Query: 577 HEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVD 398
HEYS++ G+QE VH+IL+NLK+I+L S+ GI + + GP V A ++ LP + IV+
Sbjct: 72 HEYSSLSGVQESVHDILINLKKIILSSSFSGIFEGFLSVVGPKTVLASDLNLPSFIKIVN 131
Query: 397 NTQHIANVTEPIQLCIGLQIERDRGYRINTLKN 299
Q+IA V +PI + + I++ +GY +LKN
Sbjct: 132 PDQYIATVNKPINFNLQIYIQKGKGY---SLKN 161
[210][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 108 bits (269), Expect(2) = 5e-29
Identities = 56/94 (59%), Positives = 70/94 (74%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HEYSTI+GIQE VH+IL+N KEIVLKSN Y + A I GP +TAQ+IILPPSV I
Sbjct: 70 VTHEYSTILGIQESVHDILINSKEIVLKSNSYETQKAFISILGPKKITAQDIILPPSVKI 129
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 302
+D TQ+IA +T+ I L I +IE+D GYRI K
Sbjct: 130 IDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSK 163
Score = 43.9 bits (102), Expect(2) = 5e-29
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHSYVNGNE 208
DG + +DA+FMP+RNAN+SIHS+ N N+
Sbjct: 167 DGLFFVDAVFMPIRNANYSIHSFENKNK 194
[211][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 75.1 bits (183), Expect(2) = 2e-24
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE+ST+ G++E V EIL+N+KE+VL+SN + + +GPG VTA+ + LP V +
Sbjct: 79 VTHEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQGPGEVTAEKLQLPSEVEV 138
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
++ HIA + E L + I R RGYR
Sbjct: 139 INPRHHIATLAEGAILEMEFMIGRGRGYR 167
Score = 61.6 bits (148), Expect(2) = 2e-24
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
ID++FMPVR N+++ + G +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 184 IDSVFMPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSP 241
[212][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 68.9 bits (167), Expect(2) = 3e-24
Identities = 37/89 (41%), Positives = 55/89 (61%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E V EIL+NLKEIVL S + + +GP VTA + LP V +
Sbjct: 61 VNHEFATIPGVREDVLEILLNLKEIVLNSYSNQRQIGRLLVQGPATVTAGHFDLPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
VD Q+IA ++ L + Q+E+ GYR
Sbjct: 121 VDKNQYIATLSPGSTLEMEFQVEKGTGYR 149
Score = 67.4 bits (163), Expect(2) = 3e-24
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
IDA+FMPVR N+++ + V G+ +++ L L+IWTNGSLTP+EAL +A+ L+DLF+P
Sbjct: 166 IDAVFMPVRKVNYTVEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLK 225
Query: 99 HAEEEKLNFENNE 61
E + + +
Sbjct: 226 DITLESIKTDQTD 238
[213][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 72.4 bits (176), Expect(2) = 3e-23
Identities = 34/89 (38%), Positives = 57/89 (64%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+SHE++T+ G++E V EI+M +KE++LKS + + GP +TA + LP V +
Sbjct: 61 VSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
+D TQ++A + E +L + +IER +GYR
Sbjct: 121 IDPTQYVATIAEGGKLEMEFRIERGKGYR 149
Score = 60.5 bits (145), Expect(2) = 3e-23
Identities = 29/58 (50%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
ID+IFMPVR N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 166 IDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[214][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 72.4 bits (176), Expect(2) = 3e-23
Identities = 34/89 (38%), Positives = 57/89 (64%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+SHE++T+ G++E V EI+M +KE++LKS + + GP +TA + LP V +
Sbjct: 61 VSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
+D TQ++A + E +L + +IER +GYR
Sbjct: 121 IDPTQYVATIAEGGKLEMEFRIERGKGYR 149
Score = 60.5 bits (145), Expect(2) = 3e-23
Identities = 29/58 (50%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
ID+IFMPVR N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 166 IDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[215][TOP]
>UniRef100_Q33616 Orf protein (Fragment) n=1 Tax=Musa balbisiana RepID=Q33616_MUSBA
Length = 67
Score = 111 bits (278), Expect = 4e-23
Identities = 53/67 (79%), Positives = 60/67 (89%)
Frame = -2
Query: 529 LMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIANVTEPIQLCI 350
L+NLKEIVL+SN+YG+RDASIC +GP YVTAQ+II PPSV IVD TQHIAN+TEPI LCI
Sbjct: 1 LLNLKEIVLRSNIYGVRDASICARGPKYVTAQDIISPPSVEIVDTTQHIANLTEPIDLCI 60
Query: 349 GLQIERD 329
GLQI RD
Sbjct: 61 GLQIRRD 67
[216][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 67.0 bits (162), Expect(2) = 5e-23
Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 8/90 (8%)
Frame = -2
Query: 577 HEYSTIVGIQEPVHEILMNLKEIVLKSNL--------YGIRDASICFKGPGYVTAQNIIL 422
HEYST+ G++E V EIL+NLK+IV+K + ASI +GPG VTA++I
Sbjct: 72 HEYSTLDGVRESVDEILLNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGVVTAEHIKF 131
Query: 421 PPSVVIVDNTQHIANVTEPIQLCIGLQIER 332
P S++ VD Q IA + QLCI L I +
Sbjct: 132 PSSILAVDPDQSIATLLNETQLCIELFIRQ 161
Score = 65.1 bits (157), Expect(2) = 5e-23
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF----I 109
IDA F PV+ AN SIHS + Q++L LEIWTN +LTP EALY+A +L++LF
Sbjct: 179 IDANFTPVQKANFSIHSVGDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISP 238
Query: 108 PFLHAE 91
P LH E
Sbjct: 239 PLLHKE 244
[217][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 66.6 bits (161), Expect(2) = 5e-23
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
IDAIFMPVR N+ + ++ +E +E L LEIW NGS+TP++++ +A+ L++LF PF
Sbjct: 165 IDAIFMPVRKVNYMVEEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPF- 223
Query: 99 HAEEEKLNFENNE 61
+K+NFEN +
Sbjct: 224 ----KKINFENTD 232
Score = 65.5 bits (158), Expect(2) = 5e-23
Identities = 36/90 (40%), Positives = 54/90 (60%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE+ +I G++E V E+L+NLK IVLKS + + +G VT N LP V I
Sbjct: 61 VNHEFCSIPGVKEDVLELLLNLKNIVLKSYTNEPQIGRLKIQGACKVTTANFELPSEVEI 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+ TQ++A V E L + +IE+ RGY+I
Sbjct: 121 IHGTQYVATVAENAILEMEFKIEKGRGYKI 150
[218][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 68.9 bits (167), Expect(2) = 5e-23
Identities = 32/89 (35%), Positives = 55/89 (61%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++T+ G++E V E+++N+KEI+LKS + + GP V A LP V I
Sbjct: 61 VNHEFATVQGVREDVMELMLNMKEIILKSYTNQTQIGRLVATGPATVVAAQFDLPSEVEI 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
VD Q++A + E +L + ++E+ +GYR
Sbjct: 121 VDRNQYVATLAEGAKLEMEFRVEKGKGYR 149
Score = 63.2 bits (152), Expect(2) = 5e-23
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF- 103
ID+IFMPV N+S+ + + ++ L LEIWTNGS+ PKEAL +A+ L++LF P
Sbjct: 166 IDSIFMPVTKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLK 225
Query: 102 -LHAEEEKLNFENNE 61
L+A E NF++ E
Sbjct: 226 DLNALESSSNFDDQE 240
[219][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 70.5 bits (171), Expect(2) = 8e-23
Identities = 37/89 (41%), Positives = 54/89 (60%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI GI+E V EIL+N+KE+VLKS G + GP V + LP V
Sbjct: 61 VNHEFATIAGIREDVLEILLNMKEVVLKSYTPGPHIGRVMITGPSTVRSAQFDLPSDVEF 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
VD Q+IA + + +L + +IER +GYR
Sbjct: 121 VDPGQYIATLADGAKLEMEFRIERGKGYR 149
Score = 60.8 bits (146), Expect(2) = 8e-23
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
+DA+FMPV N+S+ + V+G+ +++ L L++WTNGS++P+EAL +A+ L+DLF P
Sbjct: 166 LDAVFMPVTKVNYSVEDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLK 225
Query: 99 HAE 91
E
Sbjct: 226 DIE 228
[220][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 70.5 bits (171), Expect(2) = 1e-22
Identities = 35/89 (39%), Positives = 56/89 (62%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE+ST+ G++E V EIL+N+KE+VL+S+ + + +GPG VTA+ + LP V +
Sbjct: 81 VTHEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEV 140
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
++ HIA + E L + I R GYR
Sbjct: 141 INPRHHIATLAEGAILEMEFMIGRGHGYR 169
Score = 60.5 bits (145), Expect(2) = 1e-22
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
ID++FMPVR N+++ + G +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 186 IDSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAP 243
[221][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 68.6 bits (166), Expect(2) = 1e-22
Identities = 35/89 (39%), Positives = 56/89 (62%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E V E+++N+KEI LKS + + GP VTA LP V I
Sbjct: 61 VNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAGQFDLPSEVEI 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
VD +Q++A + E +L + +IE+ +GYR
Sbjct: 121 VDPSQYVATLAEGSKLEMEFRIEKGKGYR 149
Score = 62.4 bits (150), Expect(2) = 1e-22
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
ID++FMPV N+S+ V+G ++ L +EIWTNGS+ PKEAL EA+ ++DLF P
Sbjct: 166 IDSVFMPVTKVNYSVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLR 225
Query: 99 HAEE 88
E
Sbjct: 226 DLNE 229
[222][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 69.7 bits (169), Expect(2) = 2e-22
Identities = 34/89 (38%), Positives = 57/89 (64%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+SHE++T+ G++E V EILM +KE++LK+ + + GP VTA + LP V +
Sbjct: 61 VSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVNGPVTVTAAHFDLPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
+D TQ++A + + +L + +IER +GYR
Sbjct: 121 IDPTQYVATIADGGKLEMEFRIERGKGYR 149
Score = 60.5 bits (145), Expect(2) = 2e-22
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
ID++FMPVR N+S+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 166 IDSVFMPVRKVNYSVEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 222
[223][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 67.8 bits (164), Expect(2) = 2e-22
Identities = 32/89 (35%), Positives = 54/89 (60%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++T+ G++E V E+++N+KEI LKS + + GP V A LP V I
Sbjct: 61 VNHEFATVEGVREDVMELMLNMKEITLKSYTNQTQIGRLVATGPATVVAAQFDLPSEVEI 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
VD Q++A + E +L + ++E+ +GYR
Sbjct: 121 VDRNQYVATLAEGAKLEMEFRVEKGKGYR 149
Score = 62.4 bits (150), Expect(2) = 2e-22
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF- 103
ID+IFMPV N+S+ + + ++ L LEIWTNGS+ PKEAL +A+ L++LF P
Sbjct: 166 IDSIFMPVTKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLK 225
Query: 102 -LHAEEEKLNFENNE 61
L+A E NF++ E
Sbjct: 226 DLNALESSGNFDDQE 240
[224][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 67.4 bits (163), Expect(2) = 2e-22
Identities = 39/90 (43%), Positives = 53/90 (58%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ E+STI GI+E + EIL+NLK IVLKS ++ + KGP VTA I LP V I
Sbjct: 61 VRDEFSTIPGIREDILEILLNLKGIVLKSKTNDLKFGRLKIKGPAVVTANCIQLPSEVEI 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
V+ +IA +T L I +IE GY++
Sbjct: 121 VNPNHYIATITTSNVLEIEFKIESGTGYKL 150
Score = 62.4 bits (150), Expect(2) = 2e-22
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
IDAIFMPV+ + I + Y N N+ E LFL+IWTNGS++P+EA+ ASR +I F L
Sbjct: 165 IDAIFMPVQKVDFKIENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLL 224
Query: 99 HAEEEKLNFENNE 61
E KL E E
Sbjct: 225 ---ENKLPQETKE 234
[225][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 69.7 bits (169), Expect(2) = 3e-22
Identities = 37/89 (41%), Positives = 56/89 (62%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E V EI++N+KEIVLKS + + G VTA N LP V +
Sbjct: 63 VNHEFATIPGVREDVLEIMLNMKEIVLKSYSDQAQIGRLVATSAGTVTAANFELPSEVEV 122
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
VD TQ++A +TE +L + +IE GY+
Sbjct: 123 VDPTQYVATLTEGSKLEMEFRIETGTGYK 151
Score = 59.7 bits (143), Expect(2) = 3e-22
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGN--EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
IDA+FMPV N+ + + G E Q+ L LEIWTNGS PKEAL EA+ ++DLF P
Sbjct: 168 IDAVFMPVTKVNYIVED-IRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[226][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 70.1 bits (170), Expect(2) = 3e-22
Identities = 36/89 (40%), Positives = 56/89 (62%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E V EI++NLKE VLKS+ Y + + +GP VT + LP V +
Sbjct: 61 VNHEFATIEGVREDVLEIMLNLKEAVLKSHTYQKQIGRLLVQGPATVTVGHFDLPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
V+ Q+IA ++ L + QIE+ GYR
Sbjct: 121 VNKNQYIATLSPGATLEMECQIEKGTGYR 149
Score = 59.3 bits (142), Expect(2) = 3e-22
Identities = 29/56 (51%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLF 112
IDAIFMPVR N+++ +G +++ L LEIWT+GSLTP+EA+ +A+ L+DLF
Sbjct: 166 IDAIFMPVRKVNYTVEDARDGGSLEKDRLTLEIWTSGSLTPQEAISQAAAILVDLF 221
[227][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 71.6 bits (174), Expect(2) = 3e-22
Identities = 35/89 (39%), Positives = 57/89 (64%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E EI++N+KEI+LKS + + + GPG VTA LP V +
Sbjct: 61 VNHEFATIPGVREDALEIILNMKEIILKSYTHQPQIGRLTATGPGQVTAAQFDLPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
VD TQ+IA + + +L + +IE+ + YR
Sbjct: 121 VDPTQYIATLADGAKLEMEFRIEKGKSYR 149
Score = 57.8 bits (138), Expect(2) = 3e-22
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
IDA+FMPV N+S+ S + G+ ++ L LEIWTNGS+ P+EAL +A+ ++LF P
Sbjct: 166 IDAVFMPVTKVNYSVDSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNPLK 225
Query: 99 HAEEEKLNFENNE 61
E + E E
Sbjct: 226 DLTLEAIQDELQE 238
[228][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 71.2 bits (173), Expect(2) = 4e-22
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++T+ GI+E V +IL+N+KE+VL+S I+ + +GP VTA ++ LP V +
Sbjct: 61 VNHEFATMKGIREDVLDILLNMKELVLRSYTSDIQIGRLAVQGPKRVTAADLELPTEVQV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
V +IA + E QL + QIER +GYR
Sbjct: 121 VHPRHYIATLAEDGQLEMEFQIERGKGYR 149
Score = 57.8 bits (138), Expect(2) = 4e-22
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = -3
Query: 279 NIDAIFMPVRNANHSIHSYVNG-NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
+IDAIFMPVR N ++ S + N +Q+ L LEIWT+GSL+P+EAL +A++ L+D P
Sbjct: 165 SIDAIFMPVRKVNWTVESERSAANVEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRP 223
[229][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 65.9 bits (159), Expect(2) = 5e-22
Identities = 30/89 (33%), Positives = 57/89 (64%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E V E+++N+KEI LKS + + GP VTA +P + +
Sbjct: 61 VNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAAQFDVPSEIEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
VD +Q++A +++ +L + ++E+ +GYR
Sbjct: 121 VDPSQYVATLSDGSKLEMEFRVEKGKGYR 149
Score = 62.8 bits (151), Expect(2) = 5e-22
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
ID++FMPV N+S+ V+G ++ L LEIWTNGS+ PKEAL EA+ ++DLF P
Sbjct: 166 IDSVFMPVTKVNYSVEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLK 225
Query: 99 HAEE 88
E
Sbjct: 226 DLNE 229
[230][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 70.1 bits (170), Expect(2) = 5e-22
Identities = 37/98 (37%), Positives = 62/98 (63%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I+HE+ST+ G++E V EIL+NLK IVLK N+ + + +GP VT+ I P + +
Sbjct: 65 INHEFSTVKGVKEDVLEILLNLKNIVLKGNVLKNQIGRLKVQGPAIVTSGQIEFPLDITV 124
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFSR 290
VD Q+IA ++ L + L++E+ GY++ ++ FS+
Sbjct: 125 VDPCQYIATISGNDYLEMELKVEKSSGYKL--VETFSK 160
Score = 58.5 bits (140), Expect(2) = 5e-22
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
ID+IFMPV+ N+ + ++ E L LE+WTNGSL+P++++ AS NL+ LF P
Sbjct: 169 IDSIFMPVKKVNYYVEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[231][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 69.7 bits (169), Expect(2) = 7e-22
Identities = 33/89 (37%), Positives = 57/89 (64%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+SHE++T+ G++E V EILM +KE++LK+ + + GP +TA + LP V +
Sbjct: 61 VSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVSGPTTITAAHFDLPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
+D TQ++A + E +L + +IE+ +GYR
Sbjct: 121 IDPTQYVATIAEGGKLEMEFRIEKGKGYR 149
Score = 58.5 bits (140), Expect(2) = 7e-22
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
ID+IFMPVR N+S+ S G ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 166 IDSIFMPVRKVNYSVEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[232][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 70.9 bits (172), Expect(2) = 7e-22
Identities = 35/90 (38%), Positives = 58/90 (64%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI+G++E V EI++N+KE+VLKS + + GPG VTA +P V +
Sbjct: 61 VNHEFATILGVREDVLEIMLNMKELVLKSYTDQPQIGRLTAIGPGTVTAAQFEVPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+D Q+IA + E +L + ++ER GYR+
Sbjct: 121 IDPNQYIATLAEGAKLEMEFRVERGVGYRV 150
Score = 57.4 bits (137), Expect(2) = 7e-22
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
ID++FMPV N+++ +G ++ L L+IWTNGS+ P+EAL EAS + +LFIP
Sbjct: 166 IDSVFMPVTKVNYTVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLK 225
Query: 99 HAEE 88
E
Sbjct: 226 DLNE 229
[233][TOP]
>UniRef100_Q6B8X4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gracilaria
tenuistipitata var. liui RepID=RPOA_GRATL
Length = 314
Score = 67.8 bits (164), Expect(2) = 7e-22
Identities = 34/90 (37%), Positives = 56/90 (62%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I+HE+STI G++E V EIL+NLK++VLKS+ + I +GP +T +PP ++I
Sbjct: 61 INHEFSTITGVREDVLEILLNLKKVVLKSHSDTPQIGRIRLQGPAIITTGLFEVPPEILI 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+D Q+IA + + +IE+ GY++
Sbjct: 121 IDPQQYIATICNNTIFEMEFRIEKGSGYKL 150
Score = 60.5 bits (145), Expect(2) = 7e-22
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
IDA+FMPV N+++ ++ QE LFLE+WTNGSL+P+EA+ E ++ L LF P
Sbjct: 165 IDAVFMPVTKFNYTVEEKKISPILIQEKLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLT 224
Query: 99 HAEEEKLNFENNEHK 55
+ + N +NE++
Sbjct: 225 NLNFQNANNTDNEYE 239
[234][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 70.1 bits (170), Expect(2) = 1e-21
Identities = 38/90 (42%), Positives = 54/90 (60%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+SHE+STI GI+E V EIL+NLKEIV L + +GP VTA++ LPP + +
Sbjct: 61 VSHEFSTINGIREDVLEILLNLKEIVFSGQLQESTIGRLTVQGPAIVTARSFELPPEIKL 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+D Q+IA + L + +IE GY+I
Sbjct: 121 IDPEQYIATICGNNTLEMEFKIEVGSGYKI 150
Score = 57.4 bits (137), Expect(2) = 1e-21
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
+D++FMPV+ N I N E L L+IWTNGS++ KEA+ A+ NLI+LF P
Sbjct: 165 VDSVFMPVKKVNFRIEETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLK 224
Query: 99 HAE-EEKLNFENNE 61
+ E + ++E NE
Sbjct: 225 TIDGESETDYETNE 238
[235][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 73.6 bits (179), Expect(2) = 1e-21
Identities = 38/98 (38%), Positives = 56/98 (57%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I+HEY I G++E VHE MNLKEI L ++ ++A I GPG V A++ + P S+ I
Sbjct: 69 INHEYPAIAGVRESVHETSMNLKEIALTAHPSAAQEAHIPIVGPGKVAARDTVPPSSIGI 128
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFSR 290
+ QH A VT I+ G ++E GYR + + +
Sbjct: 129 IYPAQHAATVTRKIRSSTGSRVEGGCGYRRRNMVEYQK 166
Score = 53.9 bits (128), Expect(2) = 1e-21
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYV--NGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
+Q GS DA+ MP+RNAN+SIH +G +E+ E T+GS TP EA YEASR+
Sbjct: 164 YQKGSPPPDAVSMPIRNANYSIHRLESHSGGIMKEMPPPEARTDGSPTPGEATYEASRDS 223
Query: 123 IDLFIP 106
+LF P
Sbjct: 224 ANLFSP 229
[236][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 70.1 bits (170), Expect(2) = 1e-21
Identities = 34/90 (37%), Positives = 59/90 (65%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE+STI G++E V +IL+NLKEIVLK+ + + +GP V A+++ LP S+ +
Sbjct: 66 VNHEFSTIHGVREAVLDILLNLKEIVLKTQSQETQRGHLSVQGPSTVLARDLQLPSSIEL 125
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
VD Q+IA ++ + L + +E +GY++
Sbjct: 126 VDPDQYIATISGRVSLNMEFTVEVGKGYQL 155
Score = 57.0 bits (136), Expect(2) = 1e-21
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = -3
Query: 303 KIFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 124
K FQ IDA+FMPV N+++ G+ QE + +E+WTNGS+ ++A+ + +
Sbjct: 162 KTFQVDVLPIDAVFMPVTKVNYTVEENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKI 221
Query: 123 IDLFIP 106
I+LF P
Sbjct: 222 INLFSP 227
[237][TOP]
>UniRef100_B4WHD8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7335 RepID=B4WHD8_9SYNE
Length = 315
Score = 67.0 bits (162), Expect(2) = 2e-21
Identities = 36/88 (40%), Positives = 55/88 (62%)
Frame = -2
Query: 580 SHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIV 401
SHE+STI G++E V +IL+N+KE VLKS + + +GP VTA N LP V ++
Sbjct: 62 SHEFSTIPGVREDVLDILLNMKETVLKSYSAQPQIGRLVVQGPAKVTAANFDLPSEVELI 121
Query: 400 DNTQHIANVTEPIQLCIGLQIERDRGYR 317
++IA+V +L + +IER +GY+
Sbjct: 122 STDRYIASVAAGHKLEMEFRIERGKGYK 149
Score = 59.3 bits (142), Expect(2) = 2e-21
Identities = 27/58 (46%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
IDA+FMPVR N+S+ ++++ ++ L +EIWTNGSLT ++A+ EA+ L+D+F P
Sbjct: 166 IDAVFMPVRKVNYSVENFIDPEGFPKDRLVMEIWTNGSLTAQQAMSEAAALLVDMFNP 223
[238][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 65.1 bits (157), Expect(2) = 2e-21
Identities = 31/88 (35%), Positives = 57/88 (64%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E V +IL+N+K++VL+S+ + + +GP VT + LP V I
Sbjct: 61 VNHEFATIPGVREDVLDILLNMKQVVLRSHTNDPQIGRLFVQGPATVTTDDFELPTEVEI 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGY 320
V+ TQ++A ++ L + +IE+ +GY
Sbjct: 121 VNPTQYVATLSSDATLEMEFRIEQGKGY 148
Score = 61.2 bits (147), Expect(2) = 2e-21
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
IDAI+MPVR N+ + + V G +++ L L+IWTNG+LTP+E+L +A+ L+DLF P
Sbjct: 166 IDAIYMPVRRVNYEVEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLK 225
Query: 99 HAE---EEKLNFENNEHKVTLPL 40
A E + E + +P+
Sbjct: 226 DATFNVVEDIELEEEDETNQIPI 248
[239][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 65.5 bits (158), Expect(2) = 3e-21
Identities = 36/88 (40%), Positives = 55/88 (62%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E V EI++N+KEIVLKS + + G +VTA LP V +
Sbjct: 61 VNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFELPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGY 320
V+ TQ IA +TE +L + +IE+ GY
Sbjct: 121 VNPTQPIATLTEGAKLEMEFRIEKGVGY 148
Score = 60.5 bits (145), Expect(2) = 3e-21
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
IDA+FMPV N+S+ S + G E + + L LEIWTNGS PKEAL +A+ L+DLF P
Sbjct: 166 IDAVFMPVTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[240][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 65.1 bits (157), Expect(2) = 5e-21
Identities = 35/88 (39%), Positives = 55/88 (62%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E V EI++N+KEIVLKS + + G +VTA LP V +
Sbjct: 61 VNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFDLPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGY 320
++ TQ IA +TE +L + +IE+ GY
Sbjct: 121 INPTQPIATLTEGAKLEMEFRIEKGVGY 148
Score = 60.1 bits (144), Expect(2) = 5e-21
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
IDA+FMPV N+S+ S + G E + + L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 166 IDAVFMPVTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[241][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 64.7 bits (156), Expect(2) = 7e-21
Identities = 35/88 (39%), Positives = 55/88 (62%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E V EI++N+KEIVLKS + + G +VTA LP V +
Sbjct: 61 VNHEFATIPGVREDVLEIMLNMKEIVLKSYTDQPQIGRLVATGAAHVTAGQFDLPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGY 320
++ TQ IA +TE +L + +IE+ GY
Sbjct: 121 INPTQPIATLTEGAKLEMEFRIEKGVGY 148
Score = 60.1 bits (144), Expect(2) = 7e-21
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
IDA+FMPV N+S+ S + G E + + L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 166 IDAVFMPVTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[242][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 67.0 bits (162), Expect(2) = 7e-21
Identities = 35/90 (38%), Positives = 57/90 (63%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
I HE++TI G++E + EIL+NLK IV+KS+ I+ + +GP +TA +I LP + I
Sbjct: 61 IRHEFATIPGVREDILEILLNLKGIVIKSDTTEIKFGRLKVQGPLVLTADSIDLPSGIKI 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
V+ +IA ++ I L + +IE GY++
Sbjct: 121 VNPNHYIATISTSINLELEFKIEHGIGYKL 150
Score = 57.8 bits (138), Expect(2) = 7e-21
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Frame = -3
Query: 303 KIFQDGSYN---IDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEA 136
++F D + N ID+IFMPV+ N I + Y N E L LEIWTNGS+ P EAL +A
Sbjct: 153 QLFNDENKNFLQIDSIFMPVQKVNFKIENLYDADNSISERLILEIWTNGSIEPIEALKKA 212
Query: 135 SRNLIDLFIPFLHAE--EEKLNFENNEHKVTLPLFT 34
+ +I+ F L + +E +N K+T+ +T
Sbjct: 213 CKIIINCFNSLLKTQNTKETTKKTSNNRKLTIEPYT 248
[243][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 69.3 bits (168), Expect(2) = 1e-20
Identities = 33/89 (37%), Positives = 56/89 (62%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+SHE++T+ G++E V EILM +KE++L+S + + GP VT + LP V +
Sbjct: 61 VSHEFATVPGVREDVLEILMKMKEVILRSYSSQPQIGRLLVNGPATVTVAHFDLPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
+D TQ++A + E +L + +IE+ +GYR
Sbjct: 121 IDQTQYVATLAEGGKLEMEFRIEKGKGYR 149
Score = 54.7 bits (130), Expect(2) = 1e-20
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
ID++FMPVR N+S+ + ++ L LE+WTNGS++P+EAL A+ L++LF P
Sbjct: 166 IDSVFMPVRKVNYSVEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNP 223
[244][TOP]
>UniRef100_A6MW22 DNA-directed RNA polymerase subunit alpha n=1 Tax=Rhodomonas salina
RepID=RPOA_RHDSA
Length = 314
Score = 70.5 bits (171), Expect(2) = 1e-20
Identities = 38/90 (42%), Positives = 54/90 (60%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+SHE+STI GI+E V EIL+NLKE+VLKS + +GP VT N+ LP V +
Sbjct: 61 VSHEFSTIPGIREDVLEILLNLKEVVLKSQTKNPSVGRLRVQGPAIVTTSNLELPSEVEL 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
+D Q+IA + L + +IE +GY +
Sbjct: 121 IDPNQYIATICGNNILEMEFRIETGKGYHL 150
Score = 53.5 bits (127), Expect(2) = 1e-20
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
+DAIFMPV+ N+ N N QE L LE+WTNGS+ P++A+ + + L +L P
Sbjct: 165 VDAIFMPVKKVNYLTKDIRSNDNLLQEQLLLEVWTNGSIDPQDAVSQGGKILTELLHPL- 223
Query: 99 HAEEEKLNFENNE 61
+++NF+++E
Sbjct: 224 ----KEINFKSDE 232
[245][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 102 bits (255), Expect = 2e-20
Identities = 45/61 (73%), Positives = 56/61 (91%)
Frame = -3
Query: 264 FMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 85
FMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+L DLFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
Query: 84 K 82
+
Sbjct: 61 E 61
[246][TOP]
>UniRef100_Q6J223 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cylindrotheca
fusiformis RepID=Q6J223_CYLFU
Length = 291
Score = 61.6 bits (148), Expect(2) = 2e-20
Identities = 34/92 (36%), Positives = 53/92 (57%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+SHE+STI G++E + EIL+NLK IVLKS + + +GP VTA I LP + I
Sbjct: 53 VSHEFSTIPGVREDILEILLNLKGIVLKSKTQTAQFGRLKIQGPTVVTADLIQLPSDLEI 112
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRINT 308
V+ ++ ++ L I + E GY++ +
Sbjct: 113 VNPNHYLMTISTSNVLEIEFKFEYGTGYKLTS 144
Score = 61.6 bits (148), Expect(2) = 2e-20
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = -3
Query: 291 DGSYNIDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 115
D +D IFMPV+ N I + Y N N E +FL+IWTNGS++P EAL A++ IDL
Sbjct: 152 DNYLQLDTIFMPVQKVNFKIENVYDNNNNITEQVFLDIWTNGSISPNEALKSAAQITIDL 211
Query: 114 FIPFLHAEEEKLNFENNEHKVT 49
F L +E K E N+ + T
Sbjct: 212 FELLLKNKETK---EKNKLEAT 230
[247][TOP]
>UniRef100_Q110D1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Trichodesmium
erythraeum IMS101 RepID=RPOA_TRIEI
Length = 314
Score = 65.1 bits (157), Expect(2) = 3e-20
Identities = 33/89 (37%), Positives = 56/89 (62%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E V EIL+N+KE+VLKS + + +GP VTA +P V +
Sbjct: 61 VNHEFATIKGVREDVLEILLNMKEVVLKSYSEQPQIGRLRVEGPATVTADRFDVPSEVEV 120
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
+D +Q+IA ++ L + +IE+ GY+
Sbjct: 121 IDRSQYIATLSPGSILEMEFRIEKGTGYK 149
Score = 57.8 bits (138), Expect(2) = 3e-20
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 106
IDAIFMPVR N++I +++ + +Q+ L ++IWTNGS TP++AL A+ L+ LF P
Sbjct: 166 IDAIFMPVRKVNYTIEDAHIGSSLEQDRLIMDIWTNGSYTPQDALSNAAGILMSLFEP 223
[248][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 65.9 bits (159), Expect(2) = 3e-20
Identities = 35/90 (38%), Positives = 54/90 (60%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
+ E+S I GI+E + EIL+NLK +V+KS I + KGP VTA +I LPP++ I
Sbjct: 63 VQDEFSIIPGIREDILEILLNLKGVVVKSATPDISFGRLKIKGPAVVTADSIQLPPNIEI 122
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYRI 314
++ +IA ++ L I + ER GY++
Sbjct: 123 INPNHYIATISTSNVLEIEFKFERGTGYKL 152
Score = 56.6 bits (135), Expect(2) = 3e-20
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 100
IDAIFMP++ + I + Y N N E LFL+IWTNGS++P +A+ AS+ +I+ F L
Sbjct: 167 IDAIFMPIQKVDFKIENVYDNSNSITERLFLDIWTNGSISPDDAISYASKFIIEFFNSLL 226
Query: 99 HAEEEKLNFENNEHKVTLPLFTCHDLLAKTKL 4
E+K+T L D + T+L
Sbjct: 227 ------------ENKITQNLEIIEDTNSLTQL 246
[249][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 62.8 bits (151), Expect(2) = 1e-19
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Frame = -3
Query: 276 IDAIFMPVRNANHSIHSYVNGN-EKQEILFLEIWTNGSLTPKEALYEASRNLIDLF---- 112
IDAIFMPVR N+++ +G +++ L LEIWTNGSLTP+EAL + + L+DLF
Sbjct: 165 IDAIFMPVRKVNYTVEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLK 224
Query: 111 -IPFLHAEEEKLNFENNEHKVTL 46
+PF +E E+ +++ +
Sbjct: 225 DVPFRSSEPSHSTEEDETNQIPI 247
Score = 58.2 bits (139), Expect(2) = 1e-19
Identities = 29/89 (32%), Positives = 54/89 (60%)
Frame = -2
Query: 583 ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 404
++HE++TI G++E +IL+ +KE+VL+S + + +GP VTA N + P V +
Sbjct: 60 VNHEFATIPGVREDALDILLRMKELVLRSYSPDPQIGRLFIQGPATVTAINFEVSPDVEV 119
Query: 403 VDNTQHIANVTEPIQLCIGLQIERDRGYR 317
++ +IA ++ L + +IE+ +GYR
Sbjct: 120 INLDHYIATLSADATLEMEFKIEQGKGYR 148
[250][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 86.3 bits (212), Expect(2) = 2e-19
Identities = 39/55 (70%), Positives = 47/55 (85%)
Frame = -3
Query: 297 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS 133
FQDGSY ID +FM V+NANH+IH Y N NE+QEILFL++WTN +LTPKEA +EAS
Sbjct: 94 FQDGSYPIDTVFMSVQNANHNIHFYGNVNERQEILFLKLWTNKNLTPKEAFHEAS 148
Score = 33.9 bits (76), Expect(2) = 2e-19
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = -2
Query: 523 NLKEIVLKSNLYG-IRDASICFKGPGYVTAQNIILPPSVVIVDNTQH----IANVTEPIQ 359
N K + + S+ G + D + K GY + L + ++ N + IA + +PI
Sbjct: 14 NNKMLFVTSSFVGWLIDHILFMKWSGYDKILLLDLMYLLDLISNNNYSTILIARLKKPID 73
Query: 358 LCIGLQIERDRGYRINTLKNF 296
LCIGLQI+R+ Y + NF
Sbjct: 74 LCIGLQIKRNCKYSMKRPNNF 94