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[1][TOP]
>UniRef100_B9RZ59 RNA polymerase-associated protein RTF1, putative n=1 Tax=Ricinus
communis RepID=B9RZ59_RICCO
Length = 660
Score = 162 bits (410), Expect = 1e-38
Identities = 75/91 (82%), Positives = 83/91 (91%)
Frame = +2
Query: 8 DDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLC 187
DD GS+G +F DI+EITIRRSKLAKWFMEP+FEELIVGCFVRVGIGRSKSGPIYRLC
Sbjct: 261 DDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFEELIVGCFVRVGIGRSKSGPIYRLC 320
Query: 188 MVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
+V+NVDA+DPDR YKLENK TYKYLNV+WGN
Sbjct: 321 LVRNVDAADPDRPYKLENKTTYKYLNVIWGN 351
[2][TOP]
>UniRef100_UPI000198635D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI000198635D
Length = 585
Score = 160 bits (406), Expect = 3e-38
Identities = 76/92 (82%), Positives = 84/92 (91%)
Frame = +2
Query: 5 DDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRL 184
DDDR + GS+ +F+DIK ITIRRSKLAKWFMEPFFEELIVGCFVRVGIG+S+SGPIYRL
Sbjct: 186 DDDRGI-GSDVPTFEDIKSITIRRSKLAKWFMEPFFEELIVGCFVRVGIGKSRSGPIYRL 244
Query: 185 CMVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
CMV+NVDASDPDR Y+LENK TYKYLN VWGN
Sbjct: 245 CMVRNVDASDPDRHYQLENKTTYKYLNCVWGN 276
[3][TOP]
>UniRef100_A7QYP4 Chromosome undetermined scaffold_252, whole genome shotgun sequence
n=1 Tax=Vitis vinifera RepID=A7QYP4_VITVI
Length = 953
Score = 160 bits (406), Expect = 3e-38
Identities = 76/92 (82%), Positives = 84/92 (91%)
Frame = +2
Query: 5 DDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRL 184
DDDR + GS+ +F+DIK ITIRRSKLAKWFMEPFFEELIVGCFVRVGIG+S+SGPIYRL
Sbjct: 554 DDDRGI-GSDVPTFEDIKSITIRRSKLAKWFMEPFFEELIVGCFVRVGIGKSRSGPIYRL 612
Query: 185 CMVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
CMV+NVDASDPDR Y+LENK TYKYLN VWGN
Sbjct: 613 CMVRNVDASDPDRHYQLENKTTYKYLNCVWGN 644
[4][TOP]
>UniRef100_Q9C950 Putative uncharacterized protein T7P1.17 n=1 Tax=Arabidopsis
thaliana RepID=Q9C950_ARATH
Length = 643
Score = 155 bits (392), Expect = 1e-36
Identities = 74/92 (80%), Positives = 82/92 (89%)
Frame = +2
Query: 5 DDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRL 184
DDDR S+ +F+D+KE+TIRRSKLAKW MEPFFEELIVGCFVRVGIGRSKSGPIYRL
Sbjct: 255 DDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGPIYRL 310
Query: 185 CMVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
C VKNVDA+DPD+ YKLENK T+KYLNVVWGN
Sbjct: 311 CWVKNVDATDPDKTYKLENKTTHKYLNVVWGN 342
[5][TOP]
>UniRef100_Q8RWR3 At1g61040/T7P1_17 n=1 Tax=Arabidopsis thaliana RepID=Q8RWR3_ARATH
Length = 643
Score = 155 bits (392), Expect = 1e-36
Identities = 74/92 (80%), Positives = 82/92 (89%)
Frame = +2
Query: 5 DDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRL 184
DDDR S+ +F+D+KE+TIRRSKLAKW MEPFFEELIVGCFVRVGIGRSKSGPIYRL
Sbjct: 255 DDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGPIYRL 310
Query: 185 CMVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
C VKNVDA+DPD+ YKLENK T+KYLNVVWGN
Sbjct: 311 CWVKNVDATDPDKTYKLENKTTHKYLNVVWGN 342
[6][TOP]
>UniRef100_B9H268 PAF1 complex component n=1 Tax=Populus trichocarpa
RepID=B9H268_POPTR
Length = 662
Score = 154 bits (388), Expect = 4e-36
Identities = 69/90 (76%), Positives = 82/90 (91%)
Frame = +2
Query: 8 DDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLC 187
D+ GS+G +++DIKEITIRR+KLAKWFMEP+FEELI+GCFVRVGIGRSKSGP+YRLC
Sbjct: 262 DEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFVRVGIGRSKSGPVYRLC 321
Query: 188 MVKNVDASDPDRQYKLENKITYKYLNVVWG 277
MV+NVDA++PD+ YKLENK TYKYLNV WG
Sbjct: 322 MVRNVDAAEPDKPYKLENKSTYKYLNVTWG 351
[7][TOP]
>UniRef100_B9HYK9 PAF1 complex component n=1 Tax=Populus trichocarpa
RepID=B9HYK9_POPTR
Length = 664
Score = 152 bits (383), Expect = 1e-35
Identities = 68/90 (75%), Positives = 81/90 (90%)
Frame = +2
Query: 8 DDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLC 187
D+ GS G +++DIKEITIRR+KLAKWFMEP+FEELI+GCFVRVGIGRSK+GP+YRLC
Sbjct: 264 DEDGDPGSRGPTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFVRVGIGRSKTGPVYRLC 323
Query: 188 MVKNVDASDPDRQYKLENKITYKYLNVVWG 277
MV+NVDA++PD+ YKLENK TYKYLNV WG
Sbjct: 324 MVRNVDAAEPDKPYKLENKSTYKYLNVTWG 353
[8][TOP]
>UniRef100_C5YPC0 Putative uncharacterized protein Sb08g017010 n=1 Tax=Sorghum
bicolor RepID=C5YPC0_SORBI
Length = 656
Score = 135 bits (339), Expect = 2e-30
Identities = 63/91 (69%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Frame = +2
Query: 11 DRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-PIYRLC 187
D + S + L F D+K IT+RRSKL KWFMEPFF++LI GCFVR+GIG++KSG P YRLC
Sbjct: 262 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFDDLISGCFVRLGIGKTKSGNPRYRLC 321
Query: 188 MVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
+V+NVDASDPDR+YKLE+ TYKYLNVVWG+
Sbjct: 322 IVRNVDASDPDRKYKLESYSTYKYLNVVWGS 352
[9][TOP]
>UniRef100_Q2QPB7 cDNA clone:J023020J22, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q2QPB7_ORYSJ
Length = 522
Score = 131 bits (330), Expect = 2e-29
Identities = 62/91 (68%), Positives = 74/91 (81%), Gaps = 1/91 (1%)
Frame = +2
Query: 11 DRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-PIYRLC 187
D + S + L F D+K IT+RRSKL KWFMEPFFE+L+ GCFVR+GIG+SKSG P YRLC
Sbjct: 128 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKSKSGTPDYRLC 187
Query: 188 MVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
+V+NVDA+DPDR+YKLE T KYLNVVW N
Sbjct: 188 IVRNVDANDPDRKYKLEGYTTCKYLNVVWDN 218
[10][TOP]
>UniRef100_Q0IMW0 Os12g0535900 protein (Fragment) n=1 Tax=Oryza sativa Japonica Group
RepID=Q0IMW0_ORYSJ
Length = 599
Score = 131 bits (330), Expect = 2e-29
Identities = 62/91 (68%), Positives = 74/91 (81%), Gaps = 1/91 (1%)
Frame = +2
Query: 11 DRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-PIYRLC 187
D + S + L F D+K IT+RRSKL KWFMEPFFE+L+ GCFVR+GIG+SKSG P YRLC
Sbjct: 205 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKSKSGTPDYRLC 264
Query: 188 MVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
+V+NVDA+DPDR+YKLE T KYLNVVW N
Sbjct: 265 IVRNVDANDPDRKYKLEGYTTCKYLNVVWDN 295
[11][TOP]
>UniRef100_B8BMA9 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BMA9_ORYSI
Length = 780
Score = 131 bits (330), Expect = 2e-29
Identities = 62/91 (68%), Positives = 74/91 (81%), Gaps = 1/91 (1%)
Frame = +2
Query: 11 DRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-PIYRLC 187
D + S + L F D+K IT+RRSKL KWFMEPFFE+L+ GCFVR+GIG+SKSG P YRLC
Sbjct: 386 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKSKSGTPDYRLC 445
Query: 188 MVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
+V+NVDA+DPDR+YKLE T KYLNVVW N
Sbjct: 446 IVRNVDANDPDRKYKLEGYTTCKYLNVVWDN 476
[12][TOP]
>UniRef100_A3CI27 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3CI27_ORYSJ
Length = 653
Score = 131 bits (330), Expect = 2e-29
Identities = 62/91 (68%), Positives = 74/91 (81%), Gaps = 1/91 (1%)
Frame = +2
Query: 11 DRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-PIYRLC 187
D + S + L F D+K IT+RRSKL KWFMEPFFE+L+ GCFVR+GIG+SKSG P YRLC
Sbjct: 259 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKSKSGTPDYRLC 318
Query: 188 MVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
+V+NVDA+DPDR+YKLE T KYLNVVW N
Sbjct: 319 IVRNVDANDPDRKYKLEGYTTCKYLNVVWDN 349
[13][TOP]
>UniRef100_A9S430 Paf1 complex protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9S430_PHYPA
Length = 568
Score = 131 bits (329), Expect = 3e-29
Identities = 66/103 (64%), Positives = 75/103 (72%), Gaps = 11/103 (10%)
Frame = +2
Query: 5 DDDRALSGSEGLSFQD----------IKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIG 154
DDDR+ G G +D IK+I IRRSKLAKWFMEPFFEE+IVGCFVR+GIG
Sbjct: 171 DDDRSDVGGSGDELEDKGEPEATEDEIKDIVIRRSKLAKWFMEPFFEEIIVGCFVRIGIG 230
Query: 155 RSKSG-PIYRLCMVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
S SG IYR+C VKNVDA DPD+QYK EN +TYKYLN WG+
Sbjct: 231 VSSSGQSIYRVCQVKNVDAKDPDKQYKFENFMTYKYLNCFWGD 273
[14][TOP]
>UniRef100_C0P8E4 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C0P8E4_MAIZE
Length = 650
Score = 129 bits (325), Expect = 8e-29
Identities = 61/89 (68%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Frame = +2
Query: 11 DRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-PIYRLC 187
D + S + L F D+K IT+RRSKL KWFMEPFF++LI GCFVR+GIG++K+G P YRLC
Sbjct: 256 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFDDLISGCFVRLGIGKTKNGTPSYRLC 315
Query: 188 MVKNVDASDPDRQYKLENKITYKYLNVVW 274
+V+NVDASDPDR YKLEN T KYLNVVW
Sbjct: 316 IVRNVDASDPDRNYKLENYSTCKYLNVVW 344
[15][TOP]
>UniRef100_B7ZX72 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B7ZX72_MAIZE
Length = 647
Score = 127 bits (318), Expect = 5e-28
Identities = 60/89 (67%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Frame = +2
Query: 11 DRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-PIYRLC 187
D + S + L F D+K IT+RRSKL KWFMEPFF++LI GCFVR+GIG++K+G P YRLC
Sbjct: 253 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFDDLISGCFVRLGIGQTKNGTPRYRLC 312
Query: 188 MVKNVDASDPDRQYKLENKITYKYLNVVW 274
+V+NVDASDPDR YKLE+ T KYLNVVW
Sbjct: 313 IVRNVDASDPDRNYKLESYSTCKYLNVVW 341
[16][TOP]
>UniRef100_Q00WH0 Paf1/RNA polymerase II complex, RTF1 component (Involved in
regulation of TATA box-binding protein) (ISS) n=1
Tax=Ostreococcus tauri RepID=Q00WH0_OSTTA
Length = 430
Score = 60.5 bits (145), Expect = 6e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 5 DDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGP-IYR 181
DD + + ++ + +I+ ITIRR +L W EPFFE +VGC RVGIG +K G +YR
Sbjct: 20 DDFDSSTKNQPATKAEIESITIRRHQLESWISEPFFESAVVGCLTRVGIGLNKHGENVYR 79
Query: 182 LCMVKNVDASDPDRQYKLE 238
L + V A +QY L+
Sbjct: 80 LVEISGV-AEGKYKQYSLK 97
[17][TOP]
>UniRef100_B7G787 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G787_PHATR
Length = 1031
Score = 60.5 bits (145), Expect = 6e-08
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +2
Query: 11 DRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-PIYRLC 187
DR+ + + +D K++T+ R +LA+W EPFFE I+ CFVRV IG ++G +YRLC
Sbjct: 622 DRSGGSAVEATLEDFKKVTVPRRRLARWCNEPFFEAAILNCFVRVLIGEDENGDKVYRLC 681
Query: 188 MVKNV 202
+ +V
Sbjct: 682 EITDV 686
[18][TOP]
>UniRef100_B3SAD9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3SAD9_TRIAD
Length = 517
Score = 59.3 bits (142), Expect = 1e-07
Identities = 31/75 (41%), Positives = 42/75 (56%)
Frame = +2
Query: 53 IKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQYK 232
+ I + RSKL +W PFF E +VGCFVRVGIG + IYR+ + +D + R Y
Sbjct: 150 LSTIRLSRSKLERWVHMPFFAETVVGCFVRVGIGSHEGKQIYRVAEI--IDVIESGRVYN 207
Query: 233 LENKITYKYLNVVWG 277
L T K L++ G
Sbjct: 208 LNKTSTNKVLHLRHG 222
[19][TOP]
>UniRef100_UPI00017B30B7 UPI00017B30B7 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B30B7
Length = 650
Score = 58.9 bits (141), Expect = 2e-07
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ I + R KL +W PFF + + GCFVR+GIG S S P+YR+ + VD + +
Sbjct: 296 EELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSSSKPVYRVAEI--VDVVETAKV 353
Query: 227 YKLENKITYKYLNVVWG 277
Y+L + T K L + G
Sbjct: 354 YQLGSTRTNKGLQLRHG 370
[20][TOP]
>UniRef100_UPI00016E248B UPI00016E248B related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E248B
Length = 588
Score = 58.9 bits (141), Expect = 2e-07
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ I + R KL +W PFF + + GCFVR+GIG S S P+YR+ + VD + +
Sbjct: 234 EELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSSSKPVYRVAEI--VDVVETAKV 291
Query: 227 YKLENKITYKYLNVVWG 277
Y+L + T K L + G
Sbjct: 292 YQLGSTRTNKGLQLRHG 308
[21][TOP]
>UniRef100_Q4REC6 Chromosome 10 SCAF15123, whole genome shotgun sequence n=1
Tax=Tetraodon nigroviridis RepID=Q4REC6_TETNG
Length = 675
Score = 58.9 bits (141), Expect = 2e-07
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ I + R KL +W PFF + + GCFVR+GIG S S P+YR+ + VD + +
Sbjct: 321 EELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSSSKPVYRVAEI--VDVVETAKV 378
Query: 227 YKLENKITYKYLNVVWG 277
Y+L + T K L + G
Sbjct: 379 YQLGSTRTNKGLQLRHG 395
[22][TOP]
>UniRef100_B8A4N8 Rtf1, Paf1/RNA polymerase II complex component, homolog (S.
cerevisiae) (Fragment) n=2 Tax=Danio rerio
RepID=B8A4N8_DANRE
Length = 700
Score = 58.9 bits (141), Expect = 2e-07
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +2
Query: 5 DDDRALSGSEGLSFQD-IKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYR 181
+ + A S+ +S D + I + R KL +W PFF + + GCFVR+GIG S + P+YR
Sbjct: 327 EKEEAPPKSQPVSLPDELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSSNKPVYR 386
Query: 182 LCMVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
+ + +D + + Y+L + T K L + GN
Sbjct: 387 VAEI--IDVVETAKIYQLGSTRTNKGLQLRHGN 417
[23][TOP]
>UniRef100_B6K856 RNA polymerase-associated protein Rtf1 n=1 Tax=Schizosaccharomyces
japonicus yFS275 RepID=B6K856_SCHJY
Length = 541
Score = 58.2 bits (139), Expect = 3e-07
Identities = 29/92 (31%), Positives = 43/92 (46%)
Frame = +2
Query: 2 GDDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYR 181
G R + ++ D+ I + R + K+ P FE VGCFVRV IG +YR
Sbjct: 202 GYSPRIVETQSAVTLDDVNTIRLGRKHIVKYMFHPLFESCTVGCFVRVKIGERHGESVYR 261
Query: 182 LCMVKNVDASDPDRQYKLENKITYKYLNVVWG 277
LC +K + S + Y++E +T L G
Sbjct: 262 LCQIKGI--SKGKKAYRVEGSLTNVMLECTHG 291
[24][TOP]
>UniRef100_UPI0001864849 hypothetical protein BRAFLDRAFT_124040 n=1 Tax=Branchiostoma
floridae RepID=UPI0001864849
Length = 572
Score = 56.6 bits (135), Expect = 8e-07
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +2
Query: 41 SFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPD 220
S DI I + R KL +W PFF++ + GC+VR+GIG P+YR+ + +D +
Sbjct: 300 SKDDINRIRLSRHKLERWCHMPFFKKAVAGCYVRIGIGNHNGKPVYRIAEI--IDVVETA 357
Query: 221 RQYKLENKITYKYLNV 268
+ Y+L + T K L +
Sbjct: 358 KVYQLGSTRTNKGLRL 373
[25][TOP]
>UniRef100_UPI000180CD23 PREDICTED: similar to mCG9728 n=1 Tax=Ciona intestinalis
RepID=UPI000180CD23
Length = 648
Score = 56.2 bits (134), Expect = 1e-06
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+D+ I + R K+ KW PFF E +GCFVR+GIG P+YR+ + +D + +
Sbjct: 301 EDLSIIRLSRFKMEKWVHLPFFRETCIGCFVRIGIGNHNGRPVYRIAEI--LDVVETAKV 358
Query: 227 YKLENKITYKYLNVVWG 277
Y+L T K L + G
Sbjct: 359 YQLGKTRTNKGLRLRHG 375
[26][TOP]
>UniRef100_UPI0001757F0E PREDICTED: similar to Rtf1 CG10955-PA n=1 Tax=Tribolium castaneum
RepID=UPI0001757F0E
Length = 650
Score = 56.2 bits (134), Expect = 1e-06
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +2
Query: 50 DIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQY 229
D+ I + R KL ++ PFF+ ++ GC+V++GIG+ + P+YR+ V NV + + Y
Sbjct: 312 DMNNIRLSRHKLERFVHMPFFDRIVKGCYVKIGIGQHNNMPVYRVAEVTNV--YETAKIY 369
Query: 230 KLENKITYKYLNVVWGN 280
L N T K L V GN
Sbjct: 370 NLGNTRTNKGLRVRHGN 386
[27][TOP]
>UniRef100_A8PU86 Plus-3 domain containing protein n=1 Tax=Brugia malayi
RepID=A8PU86_BRUMA
Length = 506
Score = 56.2 bits (134), Expect = 1e-06
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +2
Query: 50 DIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-PIYRLCMVKNVDASDPDRQ 226
D+ I + R K+++ PFF + ++GCFVR+GIGR+K G +YR + +D + +
Sbjct: 336 DLARIRLSRFKISRIVHAPFFNKTVIGCFVRIGIGRNKEGRSVYRAAQI--LDVVETAKV 393
Query: 227 YKLENKITYKYLNVVWG 277
Y+LEN T K L + G
Sbjct: 394 YQLENTRTNKGLKLKHG 410
[28][TOP]
>UniRef100_UPI000155DA3A PREDICTED: similar to RNA polymerase-associated protein RTF1
homolog n=1 Tax=Equus caballus RepID=UPI000155DA3A
Length = 696
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 343 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 400
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 401 YQLGGTRTNKGLQLRHGN 418
[29][TOP]
>UniRef100_UPI0000F2B1E8 PREDICTED: similar to KIAA0252 n=1 Tax=Monodelphis domestica
RepID=UPI0000F2B1E8
Length = 709
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 356 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 413
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 414 YQLGGTRTNKGLQLRHGN 431
[30][TOP]
>UniRef100_UPI0000D9B89E PREDICTED: similar to Paf1/RNA polymerase II complex component n=1
Tax=Macaca mulatta RepID=UPI0000D9B89E
Length = 711
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 358 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 415
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 416 YQLGGTRTNKGLQLRHGN 433
[31][TOP]
>UniRef100_Q6DEX0 MGC89486 protein n=2 Tax=Xenopus (Silurana) tropicalis
RepID=Q6DEX0_XENTR
Length = 590
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 44/78 (56%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ ++ + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 237 EELNKVRLSRHKLERWCHMPFFAKTVSGCFVRIGIGNHNSKPVYRVAEITGV--VETGKV 294
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 295 YQLGGTRTNKGLQLRHGN 312
[32][TOP]
>UniRef100_UPI0001B7B452 UPI0001B7B452 related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7B452
Length = 715
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 419
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 420 YQLGGTRTNKGLQLRHGN 437
[33][TOP]
>UniRef100_UPI000154DBA6 Rtf1, Paf1/RNA polymerase II complex component, homolog n=1
Tax=Rattus norvegicus RepID=UPI000154DBA6
Length = 429
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 76 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 133
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 134 YQLGGTRTNKGLQLRHGN 151
[34][TOP]
>UniRef100_UPI0000DA227D UPI0000DA227D related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0000DA227D
Length = 715
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 419
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 420 YQLGGTRTNKGLQLRHGN 437
[35][TOP]
>UniRef100_Q92541 RNA polymerase-associated protein RTF1 homolog n=2 Tax=Homo sapiens
RepID=RTF1_HUMAN
Length = 670
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 317 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 374
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 375 YQLGGTRTNKGLQLRHGN 392
[36][TOP]
>UniRef100_UPI00005A5133 PREDICTED: similar to Paf1/RNA polymerase II complex component
isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A5133
Length = 714
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 361 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 418
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 419 YQLGGTRTNKGLQLRHGN 436
[37][TOP]
>UniRef100_Q3UXG8 Putative uncharacterized protein (Fragment) n=1 Tax=Mus musculus
RepID=Q3UXG8_MOUSE
Length = 391
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 51 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 108
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 109 YQLGGTRTNKGLQLRHGN 126
[38][TOP]
>UniRef100_A2AQ19 Rtf1 Paf1/RNA polymerase II complex component homolog (S.
cerevisiae) n=2 Tax=Mus musculus RepID=A2AQ19_MOUSE
Length = 715
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 419
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 420 YQLGGTRTNKGLQLRHGN 437
[39][TOP]
>UniRef100_Q5RAD5 RNA polymerase-associated protein RTF1 homolog n=1 Tax=Pongo abelii
RepID=RTF1_PONAB
Length = 630
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 317 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 374
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + GN
Sbjct: 375 YQLGGTRTNKGLQLRHGN 392
[40][TOP]
>UniRef100_UPI00005845E4 PREDICTED: similar to Rtf1, Paf1/RNA polymerase II complex
component, homolog (S. cerevisiae) n=1
Tax=Strongylocentrotus purpuratus RepID=UPI00005845E4
Length = 690
Score = 55.5 bits (132), Expect = 2e-06
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Frame = +2
Query: 5 DDDRALSGSEGLSF-----QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG 169
D DR E ++ +++ I + R+K+ KW PFF +GCFVR+GIG++
Sbjct: 309 DSDRDSDDEEQMTIFVSTKEELNRIRLSRNKIEKWVHMPFFPRTTIGCFVRIGIGQNNGR 368
Query: 170 PIYRLCMVKNVDASDPDRQYKLENKITYKYLNVVWGN 280
P+YR+ + +D + + Y L T K L + + +
Sbjct: 369 PVYRVAEI--IDVVETAKIYPLGATRTNKGLKLKYAS 403
[41][TOP]
>UniRef100_A7RWY6 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis
RepID=A7RWY6_NEMVE
Length = 532
Score = 54.7 bits (130), Expect = 3e-06
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +2
Query: 50 DIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNV 202
D++ I + R K+ +W PFF + + GCFVR+GIG P+YR+ +K+V
Sbjct: 184 DLERIRLSRHKMERWVHMPFFAKTLAGCFVRIGIGNHDGRPVYRVAEIKDV 234
[42][TOP]
>UniRef100_UPI000194C585 PREDICTED: Rtf1, Paf1/RNA polymerase II complex component, homolog
(S. cerevisiae) n=1 Tax=Taeniopygia guttata
RepID=UPI000194C585
Length = 647
Score = 53.9 bits (128), Expect = 5e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 294 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 351
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + G+
Sbjct: 352 YQLGGTRTNKGLQLRHGS 369
[43][TOP]
>UniRef100_UPI000179E440 PREDICTED: Rtf1, Paf1/RNA polymerase II complex component, homolog
(S. cerevisiae) isoform 1 n=1 Tax=Bos taurus
RepID=UPI000179E440
Length = 670
Score = 53.9 bits (128), Expect = 5e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 317 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 374
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + G+
Sbjct: 375 YQLGGTRTNKGLQLRHGS 392
[44][TOP]
>UniRef100_Q5ZKE3 Putative uncharacterized protein (Fragment) n=3 Tax=Gallus gallus
RepID=Q5ZKE3_CHICK
Length = 585
Score = 53.9 bits (128), Expect = 5e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V + +
Sbjct: 317 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 374
Query: 227 YKLENKITYKYLNVVWGN 280
Y+L T K L + G+
Sbjct: 375 YQLGGTRTNKGLQLRHGS 392
[45][TOP]
>UniRef100_UPI0001925F63 PREDICTED: hypothetical protein n=1 Tax=Hydra magnipapillata
RepID=UPI0001925F63
Length = 682
Score = 53.5 bits (127), Expect = 7e-06
Identities = 30/91 (32%), Positives = 47/91 (51%)
Frame = +2
Query: 5 DDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRL 184
++D+ +S E L I + R KL KW PFF ++ GCFVR+GIG P+YR+
Sbjct: 288 EEDKPISSREQLEI-----IRLSRFKLEKWVHLPFFPRVVTGCFVRMGIGNHDGKPVYRV 342
Query: 185 CMVKNVDASDPDRQYKLENKITYKYLNVVWG 277
+ + ++ + Y L + T K L + G
Sbjct: 343 GEI--IGVTETPKVYNLGSTRTNKGLKIRHG 371
[46][TOP]
>UniRef100_UPI00015B49BD PREDICTED: similar to ENSANGP00000016650 n=1 Tax=Nasonia
vitripennis RepID=UPI00015B49BD
Length = 639
Score = 53.5 bits (127), Expect = 7e-06
Identities = 27/77 (35%), Positives = 44/77 (57%)
Frame = +2
Query: 47 QDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRQ 226
+D+ +I + R K+ ++ PFFE + GCFVR+GIG + P+YR+ + V + +
Sbjct: 331 EDLNKIRLSRHKIERFVHLPFFERVAQGCFVRIGIGNNNGRPVYRVAEISGV--CETAKI 388
Query: 227 YKLENKITYKYLNVVWG 277
Y+L N T K L + G
Sbjct: 389 YQLGNTKTNKGLKLRHG 405
[47][TOP]
>UniRef100_A4SAP2 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4SAP2_OSTLU
Length = 576
Score = 53.5 bits (127), Expect = 7e-06
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Frame = +2
Query: 50 DIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGP-IYRLCMVKNVDASDPDRQ 226
+I +T++R +L +W EP+FE + C RVGIG +K G +YRL + V A +Q
Sbjct: 180 EIASVTVKRHQLEQWVNEPYFEAAVTNCLTRVGIGLNKEGQNVYRLVEIAGV-ADGKYKQ 238
Query: 227 YKLE------NK-ITYKYLNVVWG 277
Y L+ NK T K+L + WG
Sbjct: 239 YSLKKYEYLANKPPTQKWLILRWG 262
[48][TOP]
>UniRef100_C4QGL9 Expressed protein n=1 Tax=Schistosoma mansoni RepID=C4QGL9_SCHMA
Length = 717
Score = 53.5 bits (127), Expect = 7e-06
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = +2
Query: 41 SFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPD 220
S + + I + R K+ KW PFF++LI GCFVR+ IG + PIYR + VD +
Sbjct: 297 SVEHLSRIRLSRFKMEKWVHMPFFDDLIKGCFVRINIGLHQGVPIYRCAEI--VDVVETP 354
Query: 221 RQYKLENKITYK 256
+ Y L + T K
Sbjct: 355 KIYDLGDTRTNK 366