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[1][TOP]
>UniRef100_UPI0001983B83 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001983B83
Length = 561
Score = 79.3 bits (194), Expect(2) = 7e-22
Identities = 41/65 (63%), Positives = 48/65 (73%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWY 181
KLLT +EES+LI QIQ L RLEEVK RLQS REPT+ EWA+ VGLSC LQ+QL S
Sbjct: 260 KLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGN 319
Query: 182 KKQGK 196
+ + K
Sbjct: 320 RSRQK 324
Score = 48.1 bits (113), Expect(2) = 7e-22
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
G RS++KLI+ANLRMVVH+AK Y GRGL+
Sbjct: 318 GNRSRQKLIYANLRMVVHIAKQYQGRGLN 346
[2][TOP]
>UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR
Length = 535
Score = 77.0 bits (188), Expect(2) = 1e-20
Identities = 38/65 (58%), Positives = 49/65 (75%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWY 181
+LLT +EE +LI+QIQ+L LE VK RL+SQFGREPT+ EWA VGLSC+ L+ QL S
Sbjct: 234 QLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGN 293
Query: 182 KKQGK 196
+ + K
Sbjct: 294 RSREK 298
Score = 46.2 bits (108), Expect(2) = 1e-20
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G RS+EKLI+ANLRMVVH+AK Y RGL
Sbjct: 292 GNRSREKLINANLRMVVHIAKRYQNRGL 319
[3][TOP]
>UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9S0J0_RICCO
Length = 548
Score = 70.5 bits (171), Expect(2) = 8e-20
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWY 181
+LLT +EES+LI Q+Q+L LE VK + + QFGR+PT+ EWAD VGLS +Q+QL S
Sbjct: 247 QLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGN 306
Query: 182 KKQGK 196
+ + K
Sbjct: 307 RSREK 311
Score = 50.1 bits (118), Expect(2) = 8e-20
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
G RS+EKLI+ANLRMVVH+AK Y GRGLS
Sbjct: 305 GNRSREKLINANLRMVVHIAKQYQGRGLS 333
[4][TOP]
>UniRef100_A7PT61 Chromosome chr8 scaffold_29, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PT61_VITVI
Length = 284
Score = 57.4 bits (137), Expect(2) = 2e-15
Identities = 28/46 (60%), Positives = 33/46 (71%)
Frame = +2
Query: 59 RLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYKKQGK 196
RLEEVK RLQS REPT+ EWA+ VGLSC LQ+QL S + + K
Sbjct: 2 RLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQK 47
Score = 48.1 bits (113), Expect(2) = 2e-15
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
G RS++KLI+ANLRMVVH+AK Y GRGL+
Sbjct: 41 GNRSRQKLIYANLRMVVHIAKQYQGRGLN 69
[5][TOP]
>UniRef100_Q9LD95 Sigma factor-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LD95_ARATH
Length = 547
Score = 60.8 bits (146), Expect(2) = 4e-15
Identities = 28/56 (50%), Positives = 44/56 (78%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LLT +EE++LIS IQ+L +LE+VK +L+SQ G EPT+ EWA+ +G+S L++ +
Sbjct: 246 QLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDI 301
Score = 43.9 bits (102), Expect(2) = 4e-15
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G S+EKLI ANLR+VVH+AK Y RGL+F
Sbjct: 304 GRSSREKLITANLRLVVHIAKQYQNRGLNF 333
[6][TOP]
>UniRef100_Q9SMV8 Putative sigma-like transcription factor (Fragment) n=1
Tax=Arabidopsis thaliana RepID=Q9SMV8_ARATH
Length = 487
Score = 60.8 bits (146), Expect(2) = 4e-15
Identities = 28/56 (50%), Positives = 44/56 (78%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LLT +EE++LIS IQ+L +LE+VK +L+SQ G EPT+ EWA+ +G+S L++ +
Sbjct: 186 QLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDI 241
Score = 43.9 bits (102), Expect(2) = 4e-15
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G S+EKLI ANLR+VVH+AK Y RGL+F
Sbjct: 244 GRSSREKLITANLRLVVHIAKQYQNRGLNF 273
[7][TOP]
>UniRef100_Q84LK8 Os08g0242800 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84LK8_ORYSJ
Length = 572
Score = 59.3 bits (142), Expect(2) = 3e-12
Identities = 28/58 (48%), Positives = 41/58 (70%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 175
+ LT +EE L S+IQ L ++EE +L+ Q GREPT+AEWA+ VG+S LQ+ +R+
Sbjct: 272 EFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRT 329
Score = 35.4 bits (80), Expect(2) = 3e-12
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 165 SFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
S G R +EK+ +N R+V+HVA+ Y G GL
Sbjct: 326 SIRTGRRCREKMARSNFRLVIHVARKYEGYGL 357
[8][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 50.4 bits (119), Expect(2) = 1e-10
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLR 172
KLLT EE L QIQ+L +LE +K L+ + GR T+ EW+ VG+ A + +L+
Sbjct: 275 KLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQNAFEARLK 331
Score = 38.9 bits (89), Expect(2) = 1e-10
Identities = 15/29 (51%), Positives = 25/29 (86%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
G +K+K++++NLR+VV +AKNY GRG++
Sbjct: 333 GRFAKDKMVNSNLRLVVSIAKNYQGRGMT 361
[9][TOP]
>UniRef100_A9RTR6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR6_PHYPA
Length = 583
Score = 50.1 bits (118), Expect(2) = 2e-10
Identities = 22/57 (38%), Positives = 38/57 (66%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLR 172
KLL+ EE L +IQ++ +LE+++ LQ GREPT++EW+ V L +L+ +++
Sbjct: 282 KLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVSLDQTSLELRVK 338
Score = 38.9 bits (89), Expect(2) = 2e-10
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
G +K+KL+++NLR+VV + KNY GRG++
Sbjct: 340 GRSAKDKLVNSNLRLVVSIVKNYQGRGMT 368
[10][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 45.1 bits (105), Expect(2) = 2e-10
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R+ +G R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 146 RYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 181
Score = 43.9 bits (102), Expect(2) = 2e-10
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LL +EE +L +I +L LE V+ RLQ Q REP EWA+ V + A + +L
Sbjct: 94 RLLRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQIPLPAFRYRL 149
[11][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 45.4 bits (106), Expect(2) = 5e-10
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R+ VG R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 144 RYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 179
Score = 42.0 bits (97), Expect(2) = 5e-10
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LL +EE +L +I +L LE V+ RL Q R+P +EWA+ V L A + +L
Sbjct: 92 RLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRL 147
[12][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 43.9 bits (102), Expect(2) = 6e-10
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LL EEE +L +I +L LE ++ +L+ GR P+ EWA+ VG+ A Q +L
Sbjct: 79 RLLRAEEEIELARKIADLLELERLREKLRRSLGRYPSDKEWAEQVGMELPAFQRRL 134
Score = 43.1 bits (100), Expect(2) = 6e-10
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +3
Query: 174 VGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+G R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 136 LGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 166
[13][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 43.1 bits (100), Expect(2) = 1e-09
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LL EEE +L +I +L LE ++ +L+ GR P+ EWA VG+ A Q +L
Sbjct: 80 RLLRAEEEIELARKIADLLELERLREKLRRNLGRYPSDKEWAQQVGMELPAFQRRL 135
Score = 43.1 bits (100), Expect(2) = 1e-09
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +3
Query: 174 VGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+G R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 137 LGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 167
[14][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 47.0 bits (110), Expect(2) = 2e-09
Identities = 20/56 (35%), Positives = 38/56 (67%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LLT EE +L IQ+L +L+ ++ + + + G+EPT+A+WA+ +G+ L+ +L
Sbjct: 293 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRL 348
Score = 38.5 bits (88), Expect(2) = 2e-09
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 174 VGTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
VG S +K+I+ NLR+V+ VAKNY RGLS
Sbjct: 350 VGRDSFDKIINCNLRLVISVAKNYQNRGLS 379
[15][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 47.0 bits (110), Expect(2) = 2e-09
Identities = 20/56 (35%), Positives = 38/56 (67%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LLT EE +L IQ+L +L+ ++ + + + G+EPT+A+WA+ +G+ L+ +L
Sbjct: 196 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRL 251
Score = 38.5 bits (88), Expect(2) = 2e-09
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 174 VGTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
VG S +K+I+ NLR+V+ VAKNY RGLS
Sbjct: 253 VGRDSFDKIINCNLRLVISVAKNYQNRGLS 282
[16][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 45.4 bits (106), Expect(2) = 2e-09
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R +G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 135 RQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 170
Score = 40.0 bits (92), Expect(2) = 2e-09
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LL +EE +L +I +L LE ++ RL Q REP EWA V + A + +L
Sbjct: 83 RLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEMELPAFRQRL 138
[17][TOP]
>UniRef100_Q9ZPL0 Sigma factor SIG6 n=1 Tax=Zea mays RepID=Q9ZPL0_MAIZE
Length = 541
Score = 65.5 bits (158), Expect = 2e-09
Identities = 31/58 (53%), Positives = 42/58 (72%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 175
+ LT +EE Q+ SQIQNL +LE + LQ+Q GREPT+ EWA VG+SC LQ+ +R+
Sbjct: 240 EFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRT 297
[18][TOP]
>UniRef100_B4FJ30 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FJ30_MAIZE
Length = 541
Score = 65.5 bits (158), Expect = 2e-09
Identities = 31/58 (53%), Positives = 42/58 (72%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 175
+ LT +EE Q+ SQIQNL +LE + LQ+Q GREPT+ EWA VG+SC LQ+ +R+
Sbjct: 240 EFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRT 297
[19][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 48.1 bits (113), Expect(2) = 2e-09
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
KLLT EE +L + IQ+L +LE ++ L + GR+PT A+WA G+ +L+ ++
Sbjct: 273 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRI 328
Score = 37.0 bits (84), Expect(2) = 2e-09
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
GT K+K+I +N+R+V+ +AKNY G G++
Sbjct: 331 GTLCKDKMIKSNIRLVISIAKNYQGAGMN 359
[20][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 48.1 bits (113), Expect(2) = 2e-09
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
KLLT EE +L + IQ+L +LE ++ L + GR+PT A+WA G+ +L+ ++
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRI 326
Score = 37.0 bits (84), Expect(2) = 2e-09
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
GT K+K+I +N+R+V+ +AKNY G G++
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMN 357
[21][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 48.1 bits (113), Expect(2) = 2e-09
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
KLLT EE +L + IQ+L +LE ++ L + GR+PT A+WA G+ +L+ ++
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRI 326
Score = 37.0 bits (84), Expect(2) = 2e-09
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
GT K+K+I +N+R+V+ +AKNY G G++
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMN 357
[22][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 45.1 bits (105), Expect(2) = 2e-09
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R+ +G R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 145 RYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 180
Score = 40.0 bits (92), Expect(2) = 2e-09
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LL +EE +L +I +L LE V+ RL + R+P +EWA+ V L A + +L
Sbjct: 93 RLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRL 148
[23][TOP]
>UniRef100_B8BC85 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BC85_ORYSI
Length = 537
Score = 49.3 bits (116), Expect(2) = 3e-09
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 16/74 (21%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQN----------------LFRLEEVKIRLQSQFGREPTMAEWADG 133
+ LT +EE L S+IQ L ++EE +L+ Q GREPT+AEWA+
Sbjct: 221 EFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREPTLAEWAEA 280
Query: 134 VGLSCYALQTQLRS 175
VG+S LQ+ +R+
Sbjct: 281 VGMSSKELQSSIRT 294
Score = 35.4 bits (80), Expect(2) = 3e-09
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 165 SFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
S G R +EK+ +N R+V+HVA+ Y G GL
Sbjct: 291 SIRTGRRCREKMARSNFRLVIHVARKYEGYGL 322
[24][TOP]
>UniRef100_A3BR19 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BR19_ORYSJ
Length = 497
Score = 49.3 bits (116), Expect(2) = 3e-09
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 16/74 (21%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQN----------------LFRLEEVKIRLQSQFGREPTMAEWADG 133
+ LT +EE L S+IQ L ++EE +L+ Q GREPT+AEWA+
Sbjct: 181 EFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREPTLAEWAEA 240
Query: 134 VGLSCYALQTQLRS 175
VG+S LQ+ +R+
Sbjct: 241 VGMSSKELQSSIRT 254
Score = 35.4 bits (80), Expect(2) = 3e-09
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 165 SFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
S G R +EK+ +N R+V+HVA+ Y G GL
Sbjct: 251 SIRTGRRCREKMARSNFRLVIHVARKYEGYGL 282
[25][TOP]
>UniRef100_Q2JT33 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JT33_SYNJA
Length = 364
Score = 45.8 bits (107), Expect(2) = 3e-09
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
LL +EE L ++Q+ +L +V++RLQ + GREPT+AEWA
Sbjct: 58 LLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWA 98
Score = 38.9 bits (89), Expect(2) = 3e-09
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3
Query: 174 VGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
+G R+KE +I ANLR+VV VAK Y RGL
Sbjct: 121 IGKRAKEHMIKANLRLVVSVAKKYQNRGL 149
[26][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 47.4 bits (111), Expect(2) = 5e-09
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +3
Query: 141 LAVMPCRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+ V+ R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 205 MPVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 246
Score = 36.6 bits (83), Expect(2) = 5e-09
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + +S GREP EWA
Sbjct: 159 RLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWA 200
[27][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 47.0 bits (110), Expect(2) = 5e-09
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +3
Query: 141 LAVMPCRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+ V+ R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 174 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 215
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ I+ +S+ G P+ EWA
Sbjct: 128 RLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWA 169
[28][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 44.7 bits (104), Expect(2) = 6e-09
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQ--NLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLR 172
KLLT EE L +IQ +L LE+VK LQ + GREP++ EW+ VG+ A + +++
Sbjct: 287 KLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRAVGMEQNAFELRVK 345
Score = 38.9 bits (89), Expect(2) = 6e-09
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
G SK+K++++NLR+VV + KNY GRG++
Sbjct: 347 GRYSKDKMVNSNLRLVVSIVKNYQGRGMT 375
[29][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 46.2 bits (108), Expect(2) = 6e-09
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 226 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 261
Score = 37.4 bits (85), Expect(2) = 6e-09
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + +S GREP EWA
Sbjct: 174 RLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWA 215
[30][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 47.4 bits (111), Expect(2) = 8e-09
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
RH +G R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 133 RHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 168
Score = 35.8 bits (81), Expect(2) = 8e-09
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LL +EE +L +I +L LE ++ +L + REP EWA V + + + +L
Sbjct: 81 RLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVDMPLQSFRHRL 136
[31][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 46.2 bits (108), Expect(2) = 1e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 234 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 269
Score = 36.6 bits (83), Expect(2) = 1e-08
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + +S GREP EWA
Sbjct: 182 RLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWA 223
[32][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 46.2 bits (108), Expect(2) = 1e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 206 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 241
Score = 36.6 bits (83), Expect(2) = 1e-08
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + +S GREP EWA
Sbjct: 154 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWA 195
[33][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 46.2 bits (108), Expect(2) = 1e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 206 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 241
Score = 36.6 bits (83), Expect(2) = 1e-08
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + +S GREP EWA
Sbjct: 154 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWA 195
[34][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 46.2 bits (108), Expect(2) = 1e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 213 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 248
Score = 36.2 bits (82), Expect(2) = 1e-08
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + +S GREP EWA
Sbjct: 161 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWA 202
[35][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 43.9 bits (102), Expect(2) = 1e-08
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++ R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 193 RRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSF 228
Score = 38.5 bits (88), Expect(2) = 1e-08
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ I+ +S+ G PT EWA
Sbjct: 141 RLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWA 182
[36][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 46.2 bits (108), Expect(2) = 1e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 190 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 225
Score = 36.2 bits (82), Expect(2) = 1e-08
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + +S GREP EWA
Sbjct: 138 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWA 179
[37][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 48.5 bits (114), Expect(2) = 1e-08
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Frame = +3
Query: 138 VLAVMPC---RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
VLA MP R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 163 VLADMPLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 208
Score = 33.9 bits (76), Expect(2) = 1e-08
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L +LEE + +S+ G P++ EWA
Sbjct: 121 RLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWA 162
[38][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 48.5 bits (114), Expect(2) = 1e-08
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Frame = +3
Query: 138 VLAVMPC---RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
VLA MP R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 163 VLADMPLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 208
Score = 33.9 bits (76), Expect(2) = 1e-08
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L +LEE + +S+ G P++ EWA
Sbjct: 121 RLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWA 162
[39][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 45.8 bits (107), Expect(2) = 1e-08
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+ ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 141 KRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 176
Score = 36.6 bits (83), Expect(2) = 1e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL 142
+LL +EE +L +I +L LE ++ L REP ++EWA+ V +
Sbjct: 89 RLLRADEEIELARKIADLLELERIREELIYHLDREPQVSEWANAVDM 135
[40][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 46.2 bits (108), Expect(2) = 2e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 152 RRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 187
Score = 35.8 bits (81), Expect(2) = 2e-08
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWAD 130
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+
Sbjct: 100 RLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAE 142
[41][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 46.2 bits (108), Expect(2) = 2e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 151 RRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 186
Score = 35.4 bits (80), Expect(2) = 2e-08
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWAD 130
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+
Sbjct: 99 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 141
[42][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 46.2 bits (108), Expect(2) = 2e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 149 RRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 184
Score = 35.4 bits (80), Expect(2) = 2e-08
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWAD 130
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+
Sbjct: 97 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 139
[43][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 46.2 bits (108), Expect(2) = 2e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 149 RRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 184
Score = 35.4 bits (80), Expect(2) = 2e-08
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWAD 130
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+
Sbjct: 97 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 139
[44][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 46.2 bits (108), Expect(2) = 2e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 148 RRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 183
Score = 35.4 bits (80), Expect(2) = 2e-08
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWAD 130
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+
Sbjct: 96 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 138
[45][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 46.2 bits (108), Expect(2) = 2e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 148 RRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 183
Score = 35.4 bits (80), Expect(2) = 2e-08
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWAD 130
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+
Sbjct: 96 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 138
[46][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 46.2 bits (108), Expect(2) = 2e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 148 RRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 183
Score = 35.4 bits (80), Expect(2) = 2e-08
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWAD 130
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+
Sbjct: 96 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 138
[47][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 44.3 bits (103), Expect(2) = 2e-08
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R +G R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 142 RRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 177
Score = 37.4 bits (85), Expect(2) = 2e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL 142
+LL +EE +L +I +L LE ++ +L + REP EWA+ V +
Sbjct: 90 RLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDM 136
[48][TOP]
>UniRef100_Q2JIA4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIA4_SYNJB
Length = 366
Score = 42.0 bits (97), Expect(2) = 4e-08
Identities = 17/40 (42%), Positives = 29/40 (72%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEW 124
LL +EE L ++Q+ +L ++++RLQ + GR+PT+AEW
Sbjct: 60 LLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEW 99
Score = 38.9 bits (89), Expect(2) = 4e-08
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3
Query: 174 VGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
+G R+KE +I ANLR+VV VAK Y RGL
Sbjct: 123 IGKRAKEHMIKANLRLVVSVAKKYQNRGL 151
[49][TOP]
>UniRef100_B0JU57 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JU57_MICAN
Length = 328
Score = 44.7 bits (104), Expect(2) = 4e-08
Identities = 25/57 (43%), Positives = 30/57 (52%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 175
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNLSENELDRALKT 88
Score = 36.2 bits (82), Expect(2) = 4e-08
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K K+I ANLR+VV +AK Y R + F
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
[50][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 43.1 bits (100), Expect(2) = 5e-08
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL 142
+LLT EE +L IQ+L +LE+++ L+ +FG +PT A+WA G+
Sbjct: 279 RLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGV 325
Score = 37.4 bits (85), Expect(2) = 5e-08
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
G R K+K+I +N+R+V+ +AKNY G G++
Sbjct: 337 GIRCKDKMIKSNIRLVISIAKNYQGAGMN 365
[51][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 44.3 bits (103), Expect(2) = 5e-08
Identities = 20/56 (35%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LLT EE++L + IQ+L +LE++ L+ +FG+ P+ +WA G+ L+ +L
Sbjct: 276 RLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRL 331
Score = 36.2 bits (82), Expect(2) = 5e-08
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
GT K+K+I +N+R+V+ +AKNY G G++
Sbjct: 334 GTFCKDKMIKSNVRLVISIAKNYQGSGMN 362
[52][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 43.9 bits (102), Expect(2) = 5e-08
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LLT EE +L + IQ+L +LE ++ L ++G +PT A+WA G+ L+ ++
Sbjct: 270 RLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRI 325
Score = 36.6 bits (83), Expect(2) = 5e-08
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
GT K+K+I +N+R+V+ +AKNY G G++
Sbjct: 328 GTICKDKMIKSNIRLVISIAKNYQGAGMN 356
[53][TOP]
>UniRef100_A8YCV8 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCV8_MICAE
Length = 328
Score = 44.3 bits (103), Expect(2) = 5e-08
Identities = 25/57 (43%), Positives = 30/57 (52%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 175
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNLSENELDRALKT 88
Score = 36.2 bits (82), Expect(2) = 5e-08
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K K+I ANLR+VV +AK Y R + F
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
[54][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 47.0 bits (110), Expect(2) = 7e-08
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +3
Query: 141 LAVMPCRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+ V+ R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 199 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 240
Score = 33.1 bits (74), Expect(2) = 7e-08
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + +S G+ P EWA
Sbjct: 153 RLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWA 194
[55][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 47.0 bits (110), Expect(2) = 7e-08
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +3
Query: 141 LAVMPCRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+ V+ R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 196 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 237
Score = 33.1 bits (74), Expect(2) = 7e-08
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + +S G+ P EWA
Sbjct: 150 RLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWA 191
[56][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 47.0 bits (110), Expect(2) = 7e-08
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +3
Query: 141 LAVMPCRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+ V+ R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 189 MPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 230
Score = 33.1 bits (74), Expect(2) = 7e-08
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + +S G+ P EWA
Sbjct: 143 RLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWA 184
[57][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 42.7 bits (99), Expect(2) = 9e-08
Identities = 17/30 (56%), Positives = 25/30 (83%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 136 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 165
Score = 37.0 bits (84), Expect(2) = 9e-08
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL 142
+LL EEE +L +I +L LE ++ +L R PT EWA+ G+
Sbjct: 78 RLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAGM 124
[58][TOP]
>UniRef100_B4W0H2 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0H2_9CYAN
Length = 352
Score = 41.2 bits (95), Expect(2) = 9e-08
Identities = 24/52 (46%), Positives = 28/52 (53%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 160
LLT E+E Q+Q + L E K L REPTM EWAD V L AL+
Sbjct: 57 LLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWADHVDLEESALK 108
Score = 38.5 bits (88), Expect(2) = 9e-08
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
GTR+K K+I ANLR+VV +AK Y R + F
Sbjct: 114 GTRAKRKMIEANLRLVVAIAKKYQKRNMEF 143
[59][TOP]
>UniRef100_A3YWT8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YWT8_9SYNE
Length = 349
Score = 45.1 bits (105), Expect(2) = 9e-08
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQF-GREPTMAEWADGVGLSCYALQTQLRS 175
LLT E+E L Q+Q L RLEE + L+ + G++P+ AEWA GLS L+ +L S
Sbjct: 50 LLTHEQEITLGRQVQELMRLEEAEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSS 107
Score = 34.7 bits (78), Expect(2) = 9e-08
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G R+KE+++ ANLR+VV VAK Y R +
Sbjct: 108 GRRAKERMVAANLRLVVSVAKKYTKRNM 135
[60][TOP]
>UniRef100_A3Z1L6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3Z1L6_9SYNE
Length = 330
Score = 45.1 bits (105), Expect(2) = 9e-08
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQF-GREPTMAEWADGVGLSCYALQTQLRS 175
LLT E+E L Q+Q L RLEE + L+ + G++P+ AEWA GLS L+ +L S
Sbjct: 34 LLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSS 91
Score = 34.7 bits (78), Expect(2) = 9e-08
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G R+KE+++ ANLR+VV VAK Y R +
Sbjct: 92 GRRAKERMVAANLRLVVSVAKKYTKRNM 119
[61][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 42.7 bits (99), Expect(2) = 1e-07
Identities = 17/30 (56%), Positives = 25/30 (83%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 160 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 189
Score = 36.6 bits (83), Expect(2) = 1e-07
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGV 136
+LL +EE +L QI +L LE ++ L Q R P+ AEWA V
Sbjct: 102 RLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAV 146
[62][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 42.7 bits (99), Expect(2) = 1e-07
Identities = 17/30 (56%), Positives = 25/30 (83%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 160 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 189
Score = 36.6 bits (83), Expect(2) = 1e-07
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGV 136
+LL +EE +L QI +L LE ++ L Q R P+ AEWA V
Sbjct: 102 RLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAV 146
[63][TOP]
>UniRef100_B8HQG4 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HQG4_CYAP4
Length = 327
Score = 43.1 bits (100), Expect(2) = 1e-07
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYK 184
LLT E+E L Q+Q L L E + +L + R PT EWA+ LS L T +R +
Sbjct: 32 LLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEWAEQANLSVADLNTAVRRGQR 91
Query: 185 KQGK 196
+ K
Sbjct: 92 AKQK 95
Score = 36.2 bits (82), Expect(2) = 1e-07
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G R+K+K+I ANLR+VV VAK Y R L
Sbjct: 89 GQRAKQKMIEANLRLVVSVAKKYQKRNL 116
[64][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 44.7 bits (104), Expect(2) = 1e-07
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LL+ EE +L IQ+L +LE ++ L+ +FG EP+ A+WA G+ L+ +L
Sbjct: 268 RLLSATEEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRL 323
Score = 34.3 bits (77), Expect(2) = 1e-07
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLS 263
G K+K+I +N+R+V+ +AKNY G G++
Sbjct: 326 GILCKDKMIKSNVRLVISIAKNYQGTGMN 354
[65][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 46.2 bits (108), Expect(2) = 2e-07
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 258 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 293
Score = 32.3 bits (72), Expect(2) = 2e-07
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L +LEE+ + ++ G P EWA
Sbjct: 206 RLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWA 247
[66][TOP]
>UniRef100_Q5N3S3 Group2 RNA polymerase sigma factor RpoD3 n=1 Tax=Synechococcus
elongatus PCC 6301 RepID=Q5N3S3_SYNP6
Length = 326
Score = 41.6 bits (96), Expect(2) = 2e-07
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFG-REPTMAEWADGVGLSCYALQTQ 166
LLT EEE L ++Q +L+E++ LQS+ G R+P+ EWA GLS L+ Q
Sbjct: 30 LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQ 84
Score = 37.0 bits (84), Expect(2) = 2e-07
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 141 LAVMPCRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
L++ R +G ++K K+I ANLR+VV VAK YL R +
Sbjct: 76 LSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNM 115
[67][TOP]
>UniRef100_Q31QG5 RNA polymerase sigma factor rpoD3 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD3_SYNE7
Length = 320
Score = 41.6 bits (96), Expect(2) = 2e-07
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFG-REPTMAEWADGVGLSCYALQTQ 166
LLT EEE L ++Q +L+E++ LQS+ G R+P+ EWA GLS L+ Q
Sbjct: 24 LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQ 78
Score = 37.0 bits (84), Expect(2) = 2e-07
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 141 LAVMPCRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
L++ R +G ++K K+I ANLR+VV VAK YL R +
Sbjct: 70 LSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNM 109
[68][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 46.2 bits (108), Expect(2) = 2e-07
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 216 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 251
Score = 32.0 bits (71), Expect(2) = 2e-07
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + S G P EWA
Sbjct: 164 RLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWA 205
[69][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 46.2 bits (108), Expect(2) = 2e-07
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 199 RRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 234
Score = 32.0 bits (71), Expect(2) = 2e-07
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + S G P EWA
Sbjct: 147 RLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWA 188
[70][TOP]
>UniRef100_B4WG00 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WG00_9SYNE
Length = 319
Score = 45.1 bits (105), Expect(2) = 3e-07
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 160
LLT E+E L +Q L +LE ++ L REPT+AEWA+ LS AL+
Sbjct: 23 LLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEALK 74
Score = 33.1 bits (74), Expect(2) = 3e-07
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 174 VGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
+G ++K+K++ +NLR+VV +AK Y G L
Sbjct: 79 IGQQAKDKMMRSNLRLVVSIAKKYRGSKL 107
[71][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 40.0 bits (92), Expect(2) = 3e-07
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEW 124
+LL EEE QL +I L E VKI L+ + REPT +EW
Sbjct: 143 RLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEW 183
Score = 37.7 bits (86), Expect(2) = 3e-07
Identities = 15/27 (55%), Positives = 23/27 (85%)
Frame = +3
Query: 183 RSKEKLIHANLRMVVHVAKNYLGRGLS 263
R+KE+++ ANLR+VV +AK Y+ RG+S
Sbjct: 204 RAKERMVAANLRLVVSIAKRYVNRGMS 230
[72][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 40.0 bits (92), Expect(2) = 3e-07
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEW 124
+LL EEE QL +I L E VKI L+ + REPT +EW
Sbjct: 143 RLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEW 183
Score = 37.7 bits (86), Expect(2) = 3e-07
Identities = 15/27 (55%), Positives = 23/27 (85%)
Frame = +3
Query: 183 RSKEKLIHANLRMVVHVAKNYLGRGLS 263
R+KE+++ ANLR+VV +AK Y+ RG+S
Sbjct: 204 RAKERMVAANLRLVVSIAKRYVNRGMS 230
[73][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 46.6 bits (109), Expect(2) = 3e-07
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Frame = +3
Query: 138 VLAVMP---CRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
VL MP R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 146 VLVDMPPIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 191
Score = 31.2 bits (69), Expect(2) = 3e-07
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + + G+ P EWA
Sbjct: 104 RLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREWA 145
[74][TOP]
>UniRef100_Q4BWZ3 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4BWZ3_CROWT
Length = 374
Score = 40.0 bits (92), Expect(2) = 3e-07
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVG 139
LL EEE +L Q+Q L +EE K RL+ + R P+ AE A+ +G
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALG 119
Score = 37.7 bits (86), Expect(2) = 3e-07
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 162 HSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
H G +K K+I +NLR+VV +AK YL RG+ F
Sbjct: 128 HRLHKGRIAKRKMIRSNLRLVVSIAKRYLNRGVPF 162
[75][TOP]
>UniRef100_Q10XF4 RNA polymerase, sigma 28 subunit n=1 Tax=Trichodesmium erythraeum
IMS101 RepID=Q10XF4_TRIEI
Length = 319
Score = 42.4 bits (98), Expect(2) = 3e-07
Identities = 25/64 (39%), Positives = 33/64 (51%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYK 184
LL+ EEE Q+Q L L+E L GREPT+ EWA+ LS LQ +R +
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 185 KQGK 196
+ K
Sbjct: 84 AKRK 87
Score = 35.4 bits (80), Expect(2) = 3e-07
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G R+K K++ ANLR+VV VAK Y+ R +
Sbjct: 81 GERAKRKMVEANLRLVVSVAKKYIKRNV 108
[76][TOP]
>UniRef100_Q8DM59 Group2 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus
elongatus BP-1 RepID=Q8DM59_THEEB
Length = 315
Score = 42.4 bits (98), Expect(2) = 3e-07
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYK 184
LLT E+E Q+Q L + E++ +L ++ REPT AEWA +S L+T + + +
Sbjct: 20 LLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGER 79
Query: 185 KQGK 196
+ K
Sbjct: 80 AKRK 83
Score = 35.4 bits (80), Expect(2) = 3e-07
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G R+K K++ ANLR+VV VAK Y+ R +
Sbjct: 77 GERAKRKMVEANLRLVVSVAKKYIKRNV 104
[77][TOP]
>UniRef100_B4VH85 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4VH85_9CYAN
Length = 374
Score = 39.3 bits (90), Expect(2) = 4e-07
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS 145
LL EEE +L +Q+Q L ++E+ RL + GR+PT AE A + L+
Sbjct: 76 LLKPEEEIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLT 122
Score = 38.1 bits (87), Expect(2) = 4e-07
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G SK K+I +NLR+VV +AK YL RG+ F
Sbjct: 133 GQISKRKMIRSNLRLVVSIAKRYLNRGVPF 162
[78][TOP]
>UniRef100_Q7NEW6 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NEW6_GLOVI
Length = 362
Score = 40.4 bits (93), Expect(2) = 4e-07
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
+ + G+R+K+K+I ANLR+VV VAK Y RGL
Sbjct: 114 KRQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGL 147
Score = 37.0 bits (84), Expect(2) = 4e-07
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
LL +EE +L Q+Q L +L +K LQ+ G E + +WA+ + + L+ Q+
Sbjct: 63 LLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFELKRQV 117
[79][TOP]
>UniRef100_B1XKF5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=B1XKF5_SYNP2
Length = 328
Score = 39.3 bits (90), Expect(2) = 4e-07
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLR 172
LLT EEE Q+Q L L+E + L+ RE T EWA+ L+ LQ L+
Sbjct: 32 LLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTPKQLQRDLQ 87
Score = 38.1 bits (87), Expect(2) = 4e-07
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +3
Query: 174 VGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+G R+K K+I ANLR+VV +AK Y R L F
Sbjct: 88 IGERAKRKMIEANLRLVVAIAKKYQKRNLEF 118
[80][TOP]
>UniRef100_B1XNJ6 RNA polymerase sigma factor n=2 Tax=Synechococcus
RepID=B1XNJ6_SYNP2
Length = 365
Score = 40.0 bits (92), Expect(2) = 5e-07
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL 142
LL +EE QL ++ L EE ++ LQ Q GR PT EWA +GL
Sbjct: 66 LLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGL 111
Score = 37.0 bits (84), Expect(2) = 5e-07
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G +K K+I +NLR+VV +AK YL RG+ F
Sbjct: 124 GRVAKRKMIRSNLRLVVSIAKRYLNRGVPF 153
[81][TOP]
>UniRef100_B2IZR4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IZR4_NOSP7
Length = 339
Score = 40.8 bits (94), Expect(2) = 5e-07
Identities = 23/64 (35%), Positives = 32/64 (50%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYK 184
LLT E+E Q+Q + L K L + EPT+ EWAD V L L+ QL ++
Sbjct: 44 LLTREQEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVELGAEVLELQLSQGHQ 103
Query: 185 KQGK 196
+ K
Sbjct: 104 AKQK 107
Score = 36.2 bits (82), Expect(2) = 5e-07
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G ++K+K+I ANLR+VV VAK Y R L F
Sbjct: 101 GHQAKQKMIQANLRLVVAVAKKYQHRNLEF 130
[82][TOP]
>UniRef100_B4VTM7 RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1
Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4VTM7_9CYAN
Length = 331
Score = 43.9 bits (102), Expect(2) = 5e-07
Identities = 25/57 (43%), Positives = 32/57 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 175
LLT E+E Q+Q L LE+ K L Q G EPT+ EWA LS LQ+ +R+
Sbjct: 35 LLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSEAELQSCIRA 91
Score = 33.1 bits (74), Expect(2) = 5e-07
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G +K K++ ANLR+VV VAK Y+ R +
Sbjct: 92 GQTAKRKMVEANLRLVVSVAKKYIKRNV 119
[83][TOP]
>UniRef100_B1XQ38 Sigma factor n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XQ38_SYNP2
Length = 318
Score = 40.8 bits (94), Expect(2) = 5e-07
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
LLT EEE ++Q + LE++K L + +EP++ EWA LS L+ QL
Sbjct: 23 LLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQRELKKQL 77
Score = 36.2 bits (82), Expect(2) = 5e-07
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
+ ++G ++K+K++ ANLR+VV VAK Y+ R +
Sbjct: 74 KKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNM 107
[84][TOP]
>UniRef100_P96034 Sigma factor n=1 Tax=Synechococcus sp. RepID=P96034_SYNSP
Length = 317
Score = 40.8 bits (94), Expect(2) = 5e-07
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
LLT EEE ++Q + LE++K L + +EP++ EWA LS L+ QL
Sbjct: 23 LLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQRQLKKQL 77
Score = 36.2 bits (82), Expect(2) = 5e-07
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
+ ++G ++K+K++ ANLR+VV VAK Y+ R +
Sbjct: 74 KKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNM 107
[85][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 45.1 bits (105), Expect(2) = 7e-07
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = +3
Query: 141 LAVMPCRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+A+ R +G R+K+K++ +NLR+VV +AK Y+ RGLSF
Sbjct: 140 MALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 181
Score = 31.6 bits (70), Expect(2) = 7e-07
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS 145
+LL +EE +L +I +L LE ++ +L EP EWA V ++
Sbjct: 94 RLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDMA 141
[86][TOP]
>UniRef100_B5VZJ5 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Arthrospira
maxima CS-328 RepID=B5VZJ5_SPIMA
Length = 331
Score = 40.8 bits (94), Expect(2) = 7e-07
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 160
LLT E+E Q+Q L+E + L Q G EPT A+WA+ V LS LQ
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQ 87
Score = 35.8 bits (81), Expect(2) = 7e-07
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 141 LAVMPCRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
L+V +H G +K K++ ANLR+VV VAK Y+ R +
Sbjct: 81 LSVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNV 120
[87][TOP]
>UniRef100_C7QVB1 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QVB1_CYAP0
Length = 318
Score = 40.4 bits (93), Expect(2) = 7e-07
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 175
LLT EEE ++Q LE +K L + G+EPT+A+WA ++ Q +LRS
Sbjct: 23 LLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKMT----QKELRS 75
Score = 36.2 bits (82), Expect(2) = 7e-07
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
R + G +K K++ ANLR+VV VAK YL R L
Sbjct: 74 RSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNL 107
[88][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 38.5 bits (88), Expect(2) = 9e-07
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEW 124
+LL +EE QL +I L E VKI L+ + REPT +EW
Sbjct: 126 RLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEW 166
Score = 37.7 bits (86), Expect(2) = 9e-07
Identities = 15/27 (55%), Positives = 23/27 (85%)
Frame = +3
Query: 183 RSKEKLIHANLRMVVHVAKNYLGRGLS 263
R+KE+++ ANLR+VV +AK Y+ RG+S
Sbjct: 187 RAKERMVAANLRLVVSIAKRYVNRGMS 213
[89][TOP]
>UniRef100_A3IUR2 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IUR2_9CHRO
Length = 369
Score = 38.1 bits (87), Expect(2) = 9e-07
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVG 139
LL +EE +L + +Q L + EE + +L+ + R PT AEW +G
Sbjct: 70 LLNAQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMG 114
Score = 38.1 bits (87), Expect(2) = 9e-07
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 162 HSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
H G +K K+I +NLR+VV +AK YL RG+ F
Sbjct: 123 HRLHRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPF 157
[90][TOP]
>UniRef100_Q55525 RNA polymerase sigma factor n=1 Tax=Synechocystis sp. PCC 6803
RepID=Q55525_SYNY3
Length = 345
Score = 40.0 bits (92), Expect(2) = 9e-07
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
LLT E+E L Q+Q + L E K L + GREP+ EWA+ LS L L
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYL 103
Score = 36.2 bits (82), Expect(2) = 9e-07
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K K+I ANLR+VV +AK Y R + F
Sbjct: 106 GERAKRKMIEANLRLVVAIAKKYQKRNMEF 135
[91][TOP]
>UniRef100_A3IZB7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IZB7_9CHRO
Length = 328
Score = 40.0 bits (92), Expect(2) = 9e-07
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYK 184
LLT E+E Q+Q + L E K L + G+EP++ EWA V + ALQ L +
Sbjct: 32 LLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKEPSIQEWAKEVNIEEKALQKALEQGER 91
Query: 185 KQGK 196
+ K
Sbjct: 92 AKRK 95
Score = 36.2 bits (82), Expect(2) = 9e-07
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K K+I ANLR+VV +AK Y R + F
Sbjct: 89 GERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
[92][TOP]
>UniRef100_Q5MZI5 Group2 RNA polymerase sigma factor RpoD2 n=1 Tax=Synechococcus
elongatus PCC 6301 RepID=Q5MZI5_SYNP6
Length = 320
Score = 40.4 bits (93), Expect(2) = 9e-07
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWY 181
+LLT EEE Q+Q L L + + L+ + G EP+ EWA V L+ L Q+
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 182 KKQGK 196
+ + K
Sbjct: 84 RAKRK 88
Score = 35.8 bits (81), Expect(2) = 9e-07
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K K+I ANLR+VV +AK Y R + F
Sbjct: 82 GQRAKRKMIEANLRLVVSIAKKYQKRHMEF 111
[93][TOP]
>UniRef100_Q31ME3 RNA polymerase sigma factor rpoD2 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD2_SYNE7
Length = 320
Score = 40.4 bits (93), Expect(2) = 9e-07
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWY 181
+LLT EEE Q+Q L L + + L+ + G EP+ EWA V L+ L Q+
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 182 KKQGK 196
+ + K
Sbjct: 84 RAKRK 88
Score = 35.8 bits (81), Expect(2) = 9e-07
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K K+I ANLR+VV +AK Y R + F
Sbjct: 82 GQRAKRKMIEANLRLVVSIAKKYQKRHMEF 111
[94][TOP]
>UniRef100_A0YTG7 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTG7_9CYAN
Length = 319
Score = 43.1 bits (100), Expect(2) = 9e-07
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
LLT E+E Q+Q L+E K +L + GREP+ AEWA+ G+S L+ L
Sbjct: 24 LLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQAL 78
Score = 33.1 bits (74), Expect(2) = 9e-07
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G +K K++ ANLR+VV VAK Y+ R +
Sbjct: 81 GQTAKRKMVEANLRLVVSVAKKYIKRNV 108
[95][TOP]
>UniRef100_B0JY74 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JY74_MICAN
Length = 377
Score = 38.1 bits (87), Expect(2) = 1e-06
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL 142
LL+ EEE +L ++ L EEV+ +LQ R PT EWA + L
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQL 123
Score = 37.7 bits (86), Expect(2) = 1e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G +K K+I +NLR+VV +AK YL RG+ F
Sbjct: 136 GRTAKRKMIRSNLRLVVSIAKRYLNRGVPF 165
[96][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 41.6 bits (96), Expect(2) = 2e-06
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
+LL+ EE +L IQ+L +LE ++ L+ +FG +PT A+WA + L+ +L
Sbjct: 265 RLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRL 320
Score = 33.9 bits (76), Expect(2) = 2e-06
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +3
Query: 189 KEKLIHANLRMVVHVAKNYLGRGLS 263
K+K+I +N+R+V+ +AKNY G G++
Sbjct: 327 KDKMIKSNIRLVISIAKNYQGAGMN 351
[97][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 46.6 bits (109), Expect(2) = 2e-06
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Frame = +3
Query: 138 VLAVMP---CRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
VL MP R ++G R+KEK++ +NLR+VV +AK Y+ RGLSF
Sbjct: 214 VLVDMPPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 259
Score = 28.9 bits (63), Expect(2) = 2e-06
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
+LL +EE +L +I +L LEE+ + + G P EWA
Sbjct: 172 RLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWA 213
[98][TOP]
>UniRef100_B2IZW2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IZW2_NOSP7
Length = 332
Score = 40.4 bits (93), Expect(2) = 2e-06
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYK 184
LLT E+E Q+Q + L K +L Q R+PT EW + + + +L QL K
Sbjct: 37 LLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGEKSLLQQLHQGQK 96
Query: 185 KQGK 196
+ K
Sbjct: 97 AKQK 100
Score = 35.0 bits (79), Expect(2) = 2e-06
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G ++K+K+I ANLR+VV +AK Y L F
Sbjct: 94 GQKAKQKMIQANLRLVVSIAKKYQRHNLDF 123
[99][TOP]
>UniRef100_B1WQ73 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQ73_CYAA5
Length = 328
Score = 39.3 bits (90), Expect(2) = 2e-06
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYK 184
LLT E+E Q+Q + L E K L G+EP++ EWA V L AL L +
Sbjct: 32 LLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNLEEKALTKALEQGER 91
Query: 185 KQGK 196
+ K
Sbjct: 92 AKRK 95
Score = 36.2 bits (82), Expect(2) = 2e-06
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K K+I ANLR+VV +AK Y R + F
Sbjct: 89 GERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
[100][TOP]
>UniRef100_B1WQ30 RNA polymerase sigma factor n=2 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQ30_CYAA5
Length = 374
Score = 38.1 bits (87), Expect(2) = 2e-06
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 162 HSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
H G +K K+I +NLR+VV +AK YL RG+ F
Sbjct: 128 HRLHRGRTAKRKMIRSNLRLVVSIAKRYLNRGVPF 162
Score = 37.0 bits (84), Expect(2) = 2e-06
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVG 139
LL EEE +L +Q L + EE + +LQ P+ AEWA +G
Sbjct: 75 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMG 119
[101][TOP]
>UniRef100_P96032 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
RepID=P96032_SYNSP
Length = 328
Score = 38.9 bits (89), Expect(2) = 2e-06
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLR 172
LLT EEE Q+Q L L+E + L+ RE T EWA+ L+ LQ L+
Sbjct: 32 LLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTPKQLQRDLQ 87
Score = 36.2 bits (82), Expect(2) = 2e-06
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 174 VGTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
+G R+K K+I ANLR+VV +A+N R L F
Sbjct: 88 IGERAKRKMIEANLRLVVAIARNIKKRNLEF 118
[102][TOP]
>UniRef100_B1PVW0 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVW0_MICAE
Length = 377
Score = 37.7 bits (86), Expect(2) = 3e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G +K K+I +NLR+VV +AK YL RG+ F
Sbjct: 136 GRTAKRKMIRSNLRLVVSIAKRYLNRGVPF 165
Score = 37.0 bits (84), Expect(2) = 3e-06
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
LL+ EEE +L ++ L EEV+ +LQ R PT EWA
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWA 118
[103][TOP]
>UniRef100_P94906 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa
RepID=P94906_MICAE
Length = 376
Score = 37.7 bits (86), Expect(2) = 3e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G +K K+I +NLR+VV +AK YL RG+ F
Sbjct: 136 GRTAKRKMIRSNLRLVVSIAKRYLNRGVPF 165
Score = 37.0 bits (84), Expect(2) = 3e-06
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
LL+ EEE +L ++ L EEV+ +LQ R PT EWA
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWA 118
[104][TOP]
>UniRef100_Q46II1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46II1_PROMT
Length = 335
Score = 40.0 bits (92), Expect(2) = 3e-06
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 175
LL+ E+E L Q+Q+L LE ++ L+S G +P + +AD G+S L+ +L+S
Sbjct: 40 LLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKS 96
Score = 34.7 bits (78), Expect(2) = 3e-06
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G R+KE+++ ANLR+VV VAK Y R +
Sbjct: 97 GRRAKERMVAANLRLVVSVAKKYTKRNM 124
[105][TOP]
>UniRef100_A2C578 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C578_PROM1
Length = 335
Score = 40.0 bits (92), Expect(2) = 3e-06
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 175
LL+ E+E L Q+Q+L LE ++ L+S G +P + +AD GLS L+ +L+S
Sbjct: 40 LLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKS 96
Score = 34.7 bits (78), Expect(2) = 3e-06
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G R+KE+++ ANLR+VV VAK Y R +
Sbjct: 97 GRRAKERMVAANLRLVVSVAKKYTKRNM 124
[106][TOP]
>UniRef100_B7K8N4 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7K8N4_CYAP7
Length = 328
Score = 38.5 bits (88), Expect(2) = 3e-06
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS 145
LLT E+E Q+Q + L E K +L + G+EP + EWA+ V +S
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEWANQVQMS 78
Score = 36.2 bits (82), Expect(2) = 3e-06
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K K+I ANLR+VV +AK Y R + F
Sbjct: 89 GKRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
[107][TOP]
>UniRef100_B0C249 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0C249_ACAM1
Length = 327
Score = 40.0 bits (92), Expect(2) = 3e-06
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYK 184
LLT EEE Q+Q + L +++ + + GREP++ EWA+ LS L+ L +
Sbjct: 32 LLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKANLSPSQLELSLHQGQQ 91
Query: 185 KQGK 196
+ K
Sbjct: 92 AKQK 95
Score = 34.7 bits (78), Expect(2) = 3e-06
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G ++K+K+I ANLR+VV VAK Y R L
Sbjct: 89 GQQAKQKMIEANLRLVVSVAKKYQKRNL 116
[108][TOP]
>UniRef100_A5GQ42 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GQ42_SYNR3
Length = 324
Score = 38.5 bits (88), Expect(2) = 3e-06
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
LL+ E+E L Q+Q L RLEE + + + G EP+ E A G+S L+ +L
Sbjct: 29 LLSHEQEITLGRQVQELVRLEEAEAEFKMRQGHEPSREELASSFGISPAVLRRRL 83
Score = 36.2 bits (82), Expect(2) = 3e-06
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
R + G R+KE+++ ANLR+VV VAK Y R +
Sbjct: 80 RRRLINGRRAKERMVAANLRLVVSVAKKYTKRNM 113
[109][TOP]
>UniRef100_A8YJF2 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YJF2_MICAE
Length = 377
Score = 37.7 bits (86), Expect(2) = 4e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G +K K+I +NLR+VV +AK YL RG+ F
Sbjct: 136 GRTAKRKMIRSNLRLVVSIAKRYLNRGVPF 165
Score = 36.2 bits (82), Expect(2) = 4e-06
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
LL+ EEE +L ++ L EEV+ +LQ R PT EWA
Sbjct: 78 LLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWA 118
[110][TOP]
>UniRef100_B4AVJ3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AVJ3_9CHRO
Length = 328
Score = 37.7 bits (86), Expect(2) = 4e-06
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS 145
LLT E+E Q+Q + L E K L Q REP++ EWA+ V +S
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQMS 78
Score = 36.2 bits (82), Expect(2) = 4e-06
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K K+I ANLR+VV +AK Y R + F
Sbjct: 89 GKRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
[111][TOP]
>UniRef100_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa
RepID=Q8S9C8_CYAPA
Length = 427
Score = 44.7 bits (104), Expect(2) = 6e-06
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +2
Query: 2 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVG 139
+LL+ EEE +L QI++L +LE VK RL ++ GREP EWA G
Sbjct: 116 ELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAG 161
Score = 28.9 bits (63), Expect(2) = 6e-06
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGR 254
G R++ +L+ +NLR VV +AK Y +
Sbjct: 175 GRRARARLVQSNLRWVVSIAKKYANK 200
[112][TOP]
>UniRef100_B0C890 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0C890_ACAM1
Length = 318
Score = 40.4 bits (93), Expect(2) = 6e-06
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
LLT EEE Q+Q+L +L+ ++ L Q R+P AEW+ LS LQ L
Sbjct: 23 LLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAKLSEAELQKAL 77
Score = 33.1 bits (74), Expect(2) = 6e-06
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G +K K++ ANLR+VV VAK Y+ R +
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYIKRNV 107
[113][TOP]
>UniRef100_Q8DKM8 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DKM8_THEEB
Length = 309
Score = 37.4 bits (85), Expect(2) = 6e-06
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYK 184
LLT E+E L Q+Q + L E + L + GRE T EWA +C T+L + K
Sbjct: 14 LLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWA----AACNLTPTELCNILK 69
Query: 185 KQGKA 199
+ +A
Sbjct: 70 RGERA 74
Score = 36.2 bits (82), Expect(2) = 6e-06
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G R+K+K+I ANLR+VV VAK Y R L
Sbjct: 71 GERAKQKMIEANLRLVVSVAKKYQKRNL 98
[114][TOP]
>UniRef100_A5GWT3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GWT3_SYNR3
Length = 370
Score = 37.4 bits (85), Expect(2) = 7e-06
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G R+KE++I ANLR+VV VAK Y RG+
Sbjct: 128 GRRAKERMIQANLRLVVAVAKKYQHRGM 155
Score = 35.8 bits (81), Expect(2) = 7e-06
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 44 IQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSWYK 184
+ L LEE ++R S+ G +P+ ++WA GLS L+ Q+++ K
Sbjct: 62 VARLEALEEQRLRETSKLGHQPSQSQWAQACGLSAGELRAQVQAGNK 108
[115][TOP]
>UniRef100_Q3MBX2 Sigma 28 (Flagella/Sporulation) n=1 Tax=Anabaena variabilis ATCC
29413 RepID=Q3MBX2_ANAVT
Length = 332
Score = 40.8 bits (94), Expect(2) = 7e-06
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS 145
LL+ EEE + Q+Q L+EV+ L +Q GREP++ EWA ++
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANIN 83
Score = 32.3 bits (72), Expect(2) = 7e-06
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G +K K++ ANLR+VV VAK Y+ R +
Sbjct: 94 GEVAKRKMVEANLRLVVSVAKKYIKRNV 121
[116][TOP]
>UniRef100_A0ZFS4 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZFS4_NODSP
Length = 332
Score = 39.3 bits (90), Expect(2) = 7e-06
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA 127
LLT EEE Q Q+Q L EV+ L +Q GREP++ EWA
Sbjct: 37 LLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWA 77
Score = 33.9 bits (76), Expect(2) = 7e-06
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 135 WVLA----VMPCRHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
W LA V + G +K K++ ANLR+VV VAK Y+ R +
Sbjct: 76 WALAANLEVAELNDAIADGETAKRKMVEANLRLVVSVAKKYIKRNV 121
[117][TOP]
>UniRef100_B1X0Q3 Group 2 sigma-70 RNA polymerase sigma factor D n=1 Tax=Cyanothece
sp. ATCC 51142 RepID=B1X0Q3_CYAA5
Length = 318
Score = 38.1 bits (87), Expect(2) = 7e-06
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS 145
LLT EEE ++Q L LE+++ + + G+EPT ++WA LS
Sbjct: 23 LLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKLS 69
Score = 35.0 bits (79), Expect(2) = 7e-06
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGL 260
G +K K++ ANLR+VV VAK YL R L
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNL 107
[118][TOP]
>UniRef100_B0JTP4 Group 2 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JTP4_MICAN
Length = 318
Score = 38.1 bits (87), Expect(2) = 7e-06
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
LLT EEE Q+Q L LE++K L+ + G +P+ +W++ +S L+ +L
Sbjct: 23 LLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAEISEEQLRREL 77
Score = 35.0 bits (79), Expect(2) = 7e-06
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
R G +K K++ ANLR+VV VAK YL R L
Sbjct: 74 RRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNL 107
[119][TOP]
>UniRef100_B7KAB6 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 7424 RepID=B7KAB6_CYAP7
Length = 318
Score = 37.4 bits (85), Expect(2) = 7e-06
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3
Query: 165 SFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
+ G +KEK++ ANLR+VV VAK YL R L
Sbjct: 76 AIAAGKAAKEKMVEANLRLVVSVAKKYLKRNL 107
Score = 35.8 bits (81), Expect(2) = 7e-06
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS 145
LLT EEE L ++Q L+++K L REP +EWA ++
Sbjct: 23 LLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAKIT 69
[120][TOP]
>UniRef100_Q4C529 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C529_CROWT
Length = 318
Score = 37.4 bits (85), Expect(2) = 7e-06
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS 145
LL+ EEE ++Q L LE+++ + + G+EPT ++WA LS
Sbjct: 23 LLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKLS 69
Score = 35.8 bits (81), Expect(2) = 7e-06
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 135 WVLAVMPCRHSFV----VGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
W A R F G +K K++ ANLR+VV VAK YL R L
Sbjct: 62 WAKAAKLSRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNL 107
[121][TOP]
>UniRef100_B7KBG8 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KBG8_CYAP7
Length = 372
Score = 37.7 bits (86), Expect(2) = 9e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G +K K+I +NLR+VV +AK YL RG+ F
Sbjct: 131 GRSAKRKMIRSNLRLVVSIAKRYLNRGVPF 160
Score = 35.0 bits (79), Expect(2) = 9e-06
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL 142
LL EEE +L ++ L EE + +LQ R PT EWA +GL
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQQLQIDLQRPPTKLEWAQAMGL 118
[122][TOP]
>UniRef100_B4AZF8 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AZF8_9CHRO
Length = 343
Score = 37.7 bits (86), Expect(2) = 9e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G +K K+I +NLR+VV +AK YL RG+ F
Sbjct: 102 GRAAKRKMIRSNLRLVVSIAKRYLNRGVPF 131
Score = 35.0 bits (79), Expect(2) = 9e-06
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL 142
LL EEE +L ++ L EE + LQ Q R P+ EWA +GL
Sbjct: 44 LLKPEEEIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGL 89
[123][TOP]
>UniRef100_Q9KHE5 RNA polymerase sigma factor n=1 Tax=Nostoc sp. PCC 7120
RepID=Q9KHE5_ANASP
Length = 327
Score = 37.0 bits (84), Expect(2) = 9e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K+K+I ANLR+VV +AK Y R + F
Sbjct: 89 GKRAKQKMIEANLRLVVAIAKKYQKRNMEF 118
Score = 35.8 bits (81), Expect(2) = 9e-06
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGV 136
LLT E+E Q+Q + L + K L + REP++ EWAD V
Sbjct: 32 LLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHV 75
[124][TOP]
>UniRef100_Q3MBV9 RNA polymerase sigma factor n=1 Tax=Anabaena variabilis ATCC 29413
RepID=Q3MBV9_ANAVT
Length = 327
Score = 37.0 bits (84), Expect(2) = 9e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 177 GTRSKEKLIHANLRMVVHVAKNYLGRGLSF 266
G R+K+K+I ANLR+VV +AK Y R + F
Sbjct: 89 GKRAKQKMIEANLRLVVAIAKKYQKRNMEF 118
Score = 35.8 bits (81), Expect(2) = 9e-06
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGV 136
LLT E+E Q+Q + L + K L + REP++ EWAD V
Sbjct: 32 LLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHV 75
[125][TOP]
>UniRef100_A8YAB5 Genome sequencing data, contig C249 n=1 Tax=Microcystis aeruginosa
PCC 7806 RepID=A8YAB5_MICAE
Length = 318
Score = 37.7 bits (86), Expect(2) = 9e-06
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQL 169
LL+ EEE Q+Q L LE++K L+++ G +P+ +W++ +S L+ +L
Sbjct: 23 LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRREL 77
Score = 35.0 bits (79), Expect(2) = 9e-06
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 159 RHSFVVGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
R G +K K++ ANLR+VV VAK YL R L
Sbjct: 74 RRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNL 107
[126][TOP]
>UniRef100_A3ITT4 RNA polymerase sigma factor SigD n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ITT4_9CHRO
Length = 318
Score = 36.6 bits (83), Expect(2) = 9e-06
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 5 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQT 163
LLT EEE ++Q L LE+++ + + G+EPT +WA +S LQ+
Sbjct: 23 LLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKISRKELQS 75
Score = 36.2 bits (82), Expect(2) = 9e-06
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 174 VGTRSKEKLIHANLRMVVHVAKNYLGRGL 260
+G +K K++ ANLR+VV VAK YL R L
Sbjct: 79 IGEAAKRKMVEANLRLVVSVAKKYLKRNL 107