[UP]
[1][TOP]
>UniRef100_Q9BBS8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lotus japonicus
RepID=RPOC1_LOTJA
Length = 682
Score = 287 bits (735), Expect = 2e-76
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG
Sbjct: 181 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 240
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 241 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 300
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLIDLLTTSRSTPGEL
Sbjct: 301 VIYRNNTLIDLLTTSRSTPGEL 322
[2][TOP]
>UniRef100_B5LMM5 DNA-directed RNA polymerase n=1 Tax=Cicer arietinum
RepID=B5LMM5_CICAR
Length = 684
Score = 276 bits (706), Expect = 5e-73
Identities = 136/142 (95%), Positives = 139/142 (97%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREISSGAGAIREQLVDLDLRI++DSSL+EWKELGEE ST NENEWEDRKVG
Sbjct: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLIEWKELGEEGSTDNENEWEDRKVG 240
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 241 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 300
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLIDLLTTSRSTPGEL
Sbjct: 301 VIYRNNTLIDLLTTSRSTPGEL 322
[3][TOP]
>UniRef100_Q8HVY4 DNA-directed RNA polymerase subunit beta' n=1 Tax=Glycine max
RepID=RPOC1_SOYBN
Length = 687
Score = 267 bits (682), Expect = 3e-70
Identities = 131/142 (92%), Positives = 136/142 (95%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREISSGAGAIREQL DLDLRI++DSSL+EWKELGEE S NENEWEDRKVG
Sbjct: 181 TQGFDIFRNREISSGAGAIREQLADLDLRILMDSSLIEWKELGEEGSPDNENEWEDRKVG 240
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRKNFLVRR+ELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 241 RRKNFLVRRIELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 300
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLIDLLTTSRSTPGEL
Sbjct: 301 VIYRNNTLIDLLTTSRSTPGEL 322
[4][TOP]
>UniRef100_UPI0001596BBD RNA polymerase beta n=1 Tax=Medicago truncatula RepID=UPI0001596BBD
Length = 668
Score = 265 bits (676), Expect = 2e-69
Identities = 134/144 (93%), Positives = 136/144 (94%), Gaps = 2/144 (1%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERST--HNENEWEDRK 176
T GFDTFRNREISSGAGAIREQLVDLDLRI++DSSLVEWKELGEE S NENEWEDRK
Sbjct: 163 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 222
Query: 177 VGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 356
VGRRKNFLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 223 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 282
Query: 357 RRVIYRNNTLIDLLTTSRSTPGEL 428
RRVIYRNNTLIDLLTTSRSTPGEL
Sbjct: 283 RRVIYRNNTLIDLLTTSRSTPGEL 306
[5][TOP]
>UniRef100_A4GGA6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Phaseolus
vulgaris RepID=RPOC1_PHAVU
Length = 684
Score = 261 bits (666), Expect = 2e-68
Identities = 128/142 (90%), Positives = 134/142 (94%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREISSGA AIREQL DLDLRI++D SL+EWKELG+E S NENEWEDRKVG
Sbjct: 181 TRGFDIFRNREISSGAVAIREQLADLDLRIIMDYSLIEWKELGKEGSPDNENEWEDRKVG 240
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRKNFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQ+DGGKLMSSDINELYRR
Sbjct: 241 RRKNFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQVDGGKLMSSDINELYRR 300
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLIDLLTTSRSTPGEL
Sbjct: 301 VIYRNNTLIDLLTTSRSTPGEL 322
[6][TOP]
>UniRef100_Q49L07 DNA-directed RNA polymerase subunit beta' n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOC1_EUCGG
Length = 682
Score = 259 bits (661), Expect = 9e-68
Identities = 129/142 (90%), Positives = 134/142 (94%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+ID SLVEWKELGEER T NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEERPTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[7][TOP]
>UniRef100_Q68S15 DNA-directed RNA polymerase subunit beta' n=1 Tax=Panax ginseng
RepID=RPOC1_PANGI
Length = 682
Score = 258 bits (660), Expect = 1e-67
Identities = 130/142 (91%), Positives = 134/142 (94%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+IDSSLVEWKELGE+ T NE WEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIDSSLVEWKELGEDGPTGNE--WEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[8][TOP]
>UniRef100_B8R4A7 DNA-directed RNA polymerase n=1 Tax=Trifolium subterraneum
RepID=B8R4A7_TRISU
Length = 682
Score = 257 bits (657), Expect = 2e-67
Identities = 127/139 (91%), Positives = 134/139 (96%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
G+DTFRNREISSGAGAIREQLVDLDLRI++DSSLVEWKELGEE ST+NENEWEDRKVGRR
Sbjct: 181 GYDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSTNNENEWEDRKVGRR 240
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
KNFLVRRMELAKHFI +NIEPEWMVLCLLPVLPPELRPIIQIDGGKL+SSDINELYRRVI
Sbjct: 241 KNFLVRRMELAKHFILSNIEPEWMVLCLLPVLPPELRPIIQIDGGKLISSDINELYRRVI 300
Query: 369 YRNNTLIDLLTTSRSTPGE 425
RNNTLIDLLT SR+TP E
Sbjct: 301 GRNNTLIDLLTISRATPAE 319
[9][TOP]
>UniRef100_Q09X26 DNA-directed RNA polymerase subunit beta' n=1 Tax=Morus indica
RepID=RPOC1_MORIN
Length = 684
Score = 257 bits (657), Expect = 2e-67
Identities = 130/142 (91%), Positives = 133/142 (93%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDL I+ID SLVEWKELGEER T NEWEDRKVG
Sbjct: 181 TQGFDAFRNREISTGAGAIREQLADLDLPIIIDYSLVEWKELGEERPT--VNEWEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLIDLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLIDLLTTSRSTPGEL 320
[10][TOP]
>UniRef100_Q4VZP2 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cucumis sativus
RepID=RPOC1_CUCSA
Length = 680
Score = 256 bits (655), Expect = 4e-67
Identities = 129/142 (90%), Positives = 133/142 (93%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLR++ID SLVEWKELGEE NE WEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNE--WEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLIDLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLIDLLTTSRSTPGEL 320
[11][TOP]
>UniRef100_A7Y3B6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Ipomoea purpurea
RepID=RPOC1_IPOPU
Length = 687
Score = 256 bits (654), Expect = 6e-67
Identities = 126/142 (88%), Positives = 134/142 (94%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+I++SL+EWK+LGEE H NEWEDRKVG
Sbjct: 188 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLLEWKDLGEEE--HTGNEWEDRKVG 245
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 246 RRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 305
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 306 VIYRNNTLTDLLTTSRSTPGEL 327
[12][TOP]
>UniRef100_Q0ZJ29 DNA-directed RNA polymerase subunit beta' n=1 Tax=Vitis vinifera
RepID=RPOC1_VITVI
Length = 682
Score = 256 bits (653), Expect = 7e-67
Identities = 129/142 (90%), Positives = 133/142 (93%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+ID SLVEWKELGEE T NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLDDLDLRIIIDYSLVEWKELGEEGPTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[13][TOP]
>UniRef100_C0LE65 DNA-directed RNA polymerase n=1 Tax=Jatropha curcas
RepID=C0LE65_9ROSI
Length = 680
Score = 255 bits (652), Expect = 9e-67
Identities = 129/142 (90%), Positives = 133/142 (93%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+ID S VEWKELGEE T NE WEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSSVEWKELGEEGPTGNE--WEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLIDLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLIDLLTTSRSTPGEL 320
[14][TOP]
>UniRef100_A9QAV1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAV1_9APIA
Length = 544
Score = 255 bits (652), Expect = 9e-67
Identities = 127/142 (89%), Positives = 133/142 (93%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+IDSSLVEWKELGE+ T NE WEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIDSSLVEWKELGEDGPTGNE--WEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRME AKHFIRTNI+PEWMVLCLLPVLPPELRPI+QIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMEFAKHFIRTNIDPEWMVLCLLPVLPPELRPIVQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[15][TOP]
>UniRef100_P12116 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nicotiana tabacum
RepID=RPOC1_TOBAC
Length = 680
Score = 255 bits (652), Expect = 9e-67
Identities = 127/142 (89%), Positives = 134/142 (94%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+I++SLVEW+ELGEE H NEWEDRKVG
Sbjct: 180 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEG--HTGNEWEDRKVG 237
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 238 RRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 297
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 298 VIYRNNTLTDLLTTSRSTPGEL 319
[16][TOP]
>UniRef100_Q2MIJ6 DNA-directed RNA polymerase subunit beta' n=2 Tax=Solanum
RepID=RPOC1_SOLBU
Length = 681
Score = 255 bits (652), Expect = 9e-67
Identities = 127/142 (89%), Positives = 134/142 (94%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+I++SLVEW+ELGEE H NEWEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEG--HTGNEWEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[17][TOP]
>UniRef100_Q3C1G8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nicotiana
sylvestris RepID=RPOC1_NICSY
Length = 681
Score = 255 bits (652), Expect = 9e-67
Identities = 127/142 (89%), Positives = 134/142 (94%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+I++SLVEW+ELGEE H NEWEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEG--HTGNEWEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[18][TOP]
>UniRef100_Q0G9X1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Daucus carota
RepID=RPOC1_DAUCA
Length = 677
Score = 255 bits (652), Expect = 9e-67
Identities = 127/142 (89%), Positives = 134/142 (94%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+IDSSLVEWKELGE+ T NE WEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIDSSLVEWKELGEDGPTGNE--WEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNI+P+WMVLCLLPVLPPELRPI+QIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIDPKWMVLCLLPVLPPELRPIVQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[19][TOP]
>UniRef100_Q8S8Y0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Atropa belladonna
RepID=RPOC1_ATRBE
Length = 681
Score = 255 bits (652), Expect = 9e-67
Identities = 127/142 (89%), Positives = 134/142 (94%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+I++SLVEW+ELGEE H NEWEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEG--HTGNEWEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[20][TOP]
>UniRef100_Q2L8Z4 DNA-directed RNA polymerase subunit beta' n=1 Tax=Gossypium
hirsutum RepID=RPOC1_GOSHI
Length = 685
Score = 253 bits (645), Expect = 6e-66
Identities = 127/142 (89%), Positives = 133/142 (93%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFR+REIS+GAGAIREQL DLDLRI+ID S+VEWKELGEE T NE WEDRK+G
Sbjct: 181 TQGFDTFRSREISTGAGAIREQLADLDLRILIDYSVVEWKELGEEGLTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[21][TOP]
>UniRef100_A0ZZ26 DNA-directed RNA polymerase subunit beta' n=1 Tax=Gossypium
barbadense RepID=RPOC1_GOSBA
Length = 694
Score = 253 bits (645), Expect = 6e-66
Identities = 127/142 (89%), Positives = 133/142 (93%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFR+REIS+GAGAIREQL DLDLRI+ID S+VEWKELGEE T NE WEDRK+G
Sbjct: 181 TQGFDTFRSREISTGAGAIREQLADLDLRILIDYSVVEWKELGEEGLTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[22][TOP]
>UniRef100_B1A926 DNA-directed RNA polymerase subunit beta' n=1 Tax=Carica papaya
RepID=RPOC1_CARPA
Length = 680
Score = 253 bits (645), Expect = 6e-66
Identities = 126/142 (88%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDL+I+ID S +EWKELGEE T NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLQIIIDYSFLEWKELGEEGPTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[23][TOP]
>UniRef100_B0Z4M6 DNA-directed RNA polymerase subunit beta' n=5 Tax=Oenothera
RepID=RPOC1_OENAR
Length = 679
Score = 252 bits (643), Expect = 1e-65
Identities = 125/142 (88%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL LDLR++ID SLVEWKELGEERST NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLAGLDLRVIIDYSLVEWKELGEERSTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK FLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQ+DGGKLMSSDINELYRR
Sbjct: 239 RRKQFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQMDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNN L DLLTTSRSTPG+L
Sbjct: 299 VIYRNNILADLLTTSRSTPGDL 320
[24][TOP]
>UniRef100_Q33C47 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nicotiana
tomentosiformis RepID=RPOC1_NICTO
Length = 681
Score = 252 bits (643), Expect = 1e-65
Identities = 126/142 (88%), Positives = 133/142 (93%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+I++SLVEW+ELGEE H NEWEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEG--HTGNEWEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTP EL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPVEL 320
[25][TOP]
>UniRef100_B1NWE1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Manihot esculenta
RepID=RPOC1_MANES
Length = 680
Score = 252 bits (643), Expect = 1e-65
Identities = 128/142 (90%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T FDTFRNREIS+GAGAIREQL DLDLRI+ID S VEWKELGEE T NE WEDRKVG
Sbjct: 181 TQCFDTFRNREISTGAGAIREQLADLDLRIIIDYSSVEWKELGEEGPTGNE--WEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLIDLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLIDLLTTSRSTPGEL 320
[26][TOP]
>UniRef100_A9L987 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lemna minor
RepID=RPOC1_LEMMI
Length = 690
Score = 251 bits (642), Expect = 1e-65
Identities = 124/142 (87%), Positives = 133/142 (93%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF+TFRNREIS+GAGAIREQL DLDLRI+ D+SL+EWKELG+E ST NE WEDRK+
Sbjct: 188 TQGFETFRNREISTGAGAIREQLADLDLRIITDNSLIEWKELGDEGSTGNE--WEDRKIR 245
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 246 RRKDFLVRRMELAKHFIRTNVEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 305
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 306 VIYRNNTLTDLLTTSRSTPGEL 327
[27][TOP]
>UniRef100_P11705 DNA-directed RNA polymerase subunit beta' n=1 Tax=Spinacia oleracea
RepID=RPOC1_SPIOL
Length = 677
Score = 251 bits (641), Expect = 2e-65
Identities = 126/142 (88%), Positives = 130/142 (91%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLR +ID S EWKELGEE ST NE WEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRTIIDYSFAEWKELGEEGSTGNE--WEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMEL KHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELVKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLL+TSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLSTSRSTPGEL 320
[28][TOP]
>UniRef100_A9Y369 DNA-directed RNA polymerase n=1 Tax=Papaver somniferum
RepID=A9Y369_PAPSO
Length = 682
Score = 251 bits (640), Expect = 2e-65
Identities = 125/142 (88%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLR++ID SLVEWKELGEE T NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+E EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNVEAEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[29][TOP]
>UniRef100_Q589B9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Silene latifolia
RepID=RPOC1_SILLA
Length = 687
Score = 250 bits (639), Expect = 3e-65
Identities = 126/142 (88%), Positives = 129/142 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLR +ID S EWKELGEE T NE WEDRKVG
Sbjct: 184 TQGFDAFRNREISTGAGAIREQLADLDLRTIIDYSFAEWKELGEEDPTGNE--WEDRKVG 241
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 242 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 301
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 302 VIYRNNTLTDLLTTSRSTPGEL 323
[30][TOP]
>UniRef100_Q09G55 DNA-directed RNA polymerase subunit beta' n=1 Tax=Platanus
occidentalis RepID=RPOC1_PLAOC
Length = 682
Score = 250 bits (638), Expect = 4e-65
Identities = 125/141 (88%), Positives = 130/141 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI+ SLVEWKELGEE T NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIITAYSLVEWKELGEEGPTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNVEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGE 425
VIYRNNTL DLLTTSRSTPGE
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGE 319
[31][TOP]
>UniRef100_A9Y368 DNA-directed RNA polymerase n=1 Tax=Papaver somniferum
RepID=A9Y368_PAPSO
Length = 682
Score = 249 bits (637), Expect = 5e-65
Identities = 124/142 (87%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLR++ID SLVEWKELGEE T NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLVEWKELGEEGPTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+E EWMVLCLLPVLPP+LRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNVEAEWMVLCLLPVLPPDLRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[32][TOP]
>UniRef100_A8W3B5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cuscuta exaltata
RepID=RPOC1_CUSEX
Length = 691
Score = 249 bits (637), Expect = 5e-65
Identities = 123/142 (86%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRI++++SL+EWK+LGEE +T NE WEDRK G
Sbjct: 188 TQGFDTFRNREISTGAGAIREQLADLDLRILLENSLLEWKDLGEEENTGNE--WEDRKAG 245
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK FLVRRMEL KHFIRTNIEP+WMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 246 RRKGFLVRRMELVKHFIRTNIEPKWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 305
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 306 VIYRNNTLTDLLTTSRSTPGEL 327
[33][TOP]
>UniRef100_A4GYP9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Populus
trichocarpa RepID=RPOC1_POPTR
Length = 689
Score = 249 bits (635), Expect = 9e-65
Identities = 125/142 (88%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIRE L DLDLRI++D S +EWKELGEE T NE WEDRKVG
Sbjct: 188 TQGFDTFRNREISTGAGAIRELLADLDLRIILDYSSLEWKELGEEGPTGNE--WEDRKVG 245
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 246 RRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 305
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 306 VIYRNNTLTDLLTTSRSTPGEL 327
[34][TOP]
>UniRef100_Q14FG6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Populus alba
RepID=RPOC1_POPAL
Length = 682
Score = 249 bits (635), Expect = 9e-65
Identities = 125/142 (88%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIRE L DLDLRI++D S +EWKELGEE T NE WEDRKVG
Sbjct: 181 TQGFDTFRNREISTGAGAIRELLADLDLRIILDYSSLEWKELGEEGPTGNE--WEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[35][TOP]
>UniRef100_Q09FX0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nandina domestica
RepID=RPOC1_NANDO
Length = 680
Score = 249 bits (635), Expect = 9e-65
Identities = 125/142 (88%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLR++ DSSLVEWKELGEE +T NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRLITDSSLVEWKELGEEGATGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKPMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[36][TOP]
>UniRef100_Q5QA71 DNA-directed RNA polymerase subunit beta' n=1 Tax=Acorus gramineus
RepID=RPOC1_ACOGR
Length = 682
Score = 249 bits (635), Expect = 9e-65
Identities = 126/142 (88%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRIVID+S VEWKELG+E ST NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIVIDNSSVEWKELGDEGSTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLL TSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLKTSRSTPGEL 320
[37][TOP]
>UniRef100_Q4FFY2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FFY2_NUPAD
Length = 686
Score = 248 bits (634), Expect = 1e-64
Identities = 124/142 (87%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL D DLRI+ID SLVEWKELGEE ST N+ WEDRK+G
Sbjct: 185 TQGFDTFRNREISTGATAIREQLADPDLRIIIDRSLVEWKELGEEGSTGND--WEDRKIG 242
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHF+RTN+EPEWMVLCLLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 243 RRKDFLVRRMELAKHFLRTNVEPEWMVLCLLPVLPPELRPIIQIDGGKPMSSDINELYRR 302
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 303 VIYRNNTLTDLLTTSRSTPGEL 324
[38][TOP]
>UniRef100_Q4FFX9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FFX9_9ASPA
Length = 693
Score = 248 bits (634), Expect = 1e-64
Identities = 123/142 (86%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF+TFRNREIS+GA AIREQL DLDLRI+ID+SLVEWKELG+E S NE WEDRK+
Sbjct: 195 TQGFETFRNREISTGASAIREQLADLDLRIIIDNSLVEWKELGDEESAGNE--WEDRKIR 252
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 253 RRKDFLVRRMELAKHFIRTNVEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 312
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLL TSRSTPGEL
Sbjct: 313 VIYRNNTLTDLLATSRSTPGEL 334
[39][TOP]
>UniRef100_A1XFU6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nuphar advena
RepID=RPOC1_NUPAD
Length = 693
Score = 248 bits (634), Expect = 1e-64
Identities = 124/142 (87%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL D DLRI+ID SLVEWKELGEE ST N+ WEDRK+G
Sbjct: 188 TQGFDTFRNREISTGATAIREQLADPDLRIIIDRSLVEWKELGEEGSTGND--WEDRKIG 245
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHF+RTN+EPEWMVLCLLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 246 RRKDFLVRRMELAKHFLRTNVEPEWMVLCLLPVLPPELRPIIQIDGGKPMSSDINELYRR 305
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 306 VIYRNNTLTDLLTTSRSTPGEL 327
[40][TOP]
>UniRef100_Q49CA5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuscuta japonica
RepID=Q49CA5_CUSJA
Length = 265
Score = 248 bits (633), Expect = 2e-64
Identities = 123/142 (86%), Positives = 129/142 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI +++SL+EWK+LGEE H NEWEDRK G
Sbjct: 74 TKGFDIFRNREISTGAGAIREQLADLDLRISLENSLLEWKDLGEEE--HTGNEWEDRKTG 131
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK FLVRRMEL KHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 132 RRKGFLVRRMELVKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 191
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 192 VIYRNNTLTDLLTTSRSTPGEL 213
[41][TOP]
>UniRef100_A4QJS4 DNA-directed RNA polymerase subunit beta' n=1 Tax=Olimarabidopsis
pumila RepID=RPOC1_OLIPU
Length = 680
Score = 248 bits (633), Expect = 2e-64
Identities = 124/142 (87%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[42][TOP]
>UniRef100_A4QL97 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lepidium
virginicum RepID=RPOC1_LEPVR
Length = 680
Score = 248 bits (633), Expect = 2e-64
Identities = 124/142 (87%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[43][TOP]
>UniRef100_A4QL10 DNA-directed RNA polymerase subunit beta' n=1 Tax=Draba nemorosa
RepID=RPOC1_DRANE
Length = 680
Score = 248 bits (633), Expect = 2e-64
Identities = 124/142 (87%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[44][TOP]
>UniRef100_A4QKI3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Capsella
bursa-pastoris RepID=RPOC1_CAPBU
Length = 680
Score = 248 bits (633), Expect = 2e-64
Identities = 124/142 (87%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[45][TOP]
>UniRef100_A4QK96 DNA-directed RNA polymerase subunit beta' n=1 Tax=Barbarea verna
RepID=RPOC1_BARVE
Length = 680
Score = 248 bits (633), Expect = 2e-64
Identities = 124/142 (87%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[46][TOP]
>UniRef100_P56763 DNA-directed RNA polymerase subunit beta' n=1 Tax=Arabidopsis
thaliana RepID=RPOC1_ARATH
Length = 680
Score = 248 bits (633), Expect = 2e-64
Identities = 124/142 (87%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[47][TOP]
>UniRef100_A4QJA6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Aethionema
cordifolium RepID=RPOC1_AETCO
Length = 680
Score = 248 bits (633), Expect = 2e-64
Identities = 124/142 (87%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[48][TOP]
>UniRef100_Q4FFY4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acorus americanus
RepID=Q4FFY4_ACOAM
Length = 696
Score = 248 bits (632), Expect = 2e-64
Identities = 125/142 (88%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRIVID+S VEWK+LG+E ST NE WEDRK+G
Sbjct: 195 TQGFDTFRNREISTGAGAIREQLADLDLRIVIDNSSVEWKDLGDEGSTGNE--WEDRKIG 252
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 253 RRKDFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 312
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLL TSRSTPGEL
Sbjct: 313 VIYRNNTLTDLLKTSRSTPGEL 334
[49][TOP]
>UniRef100_Q6EW57 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nymphaea alba
RepID=RPOC1_NYMAL
Length = 684
Score = 248 bits (632), Expect = 2e-64
Identities = 124/142 (87%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI+ID SLVEWKELGEE ST N+ WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGATAIREQLADLDLRIIIDRSLVEWKELGEEGSTGND--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHF+RTN+EPEWMVL LLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFLRTNVEPEWMVLSLLPVLPPELRPIIQIDGGKSMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[50][TOP]
>UniRef100_A4QLI5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lobularia
maritima RepID=RPOC1_LOBMA
Length = 680
Score = 248 bits (632), Expect = 2e-64
Identities = 123/142 (86%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQ++GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQVEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[51][TOP]
>UniRef100_A4QK09 DNA-directed RNA polymerase subunit beta' n=1 Tax=Arabis hirsuta
RepID=RPOC1_ARAHI
Length = 680
Score = 248 bits (632), Expect = 2e-64
Identities = 123/142 (86%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWM+LCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMILCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[52][TOP]
>UniRef100_A9LYH6 DNA-directed RNA polymerase subunit beta' n=2 Tax=Acorus
RepID=RPOC1_ACOAM
Length = 682
Score = 248 bits (632), Expect = 2e-64
Identities = 125/142 (88%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDLRIVID+S VEWK+LG+E ST NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIVIDNSSVEWKDLGDEGSTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLL TSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLKTSRSTPGEL 320
[53][TOP]
>UniRef100_Q09MI7 DNA-directed RNA polymerase subunit beta' n=1 Tax=Citrus sinensis
RepID=RPOC1_CITSI
Length = 680
Score = 247 bits (631), Expect = 3e-64
Identities = 122/142 (85%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GA AIREQL DLDLRI++D+SL+EWKELGEE N+ WEDRK+G
Sbjct: 181 TQGFDKFRNREISTGAVAIREQLADLDLRIILDNSLLEWKELGEEGPAGND--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RR++FLVRRMELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRRDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLIDLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLIDLLTTSRSTPGEL 320
[54][TOP]
>UniRef100_A4QKS2 DNA-directed RNA polymerase subunit beta' n=1 Tax=Crucihimalaya
wallichii RepID=RPOC1_CRUWA
Length = 680
Score = 247 bits (630), Expect = 3e-64
Identities = 123/142 (86%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIR+QL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIRDQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[55][TOP]
>UniRef100_A0A326 DNA-directed RNA polymerase subunit beta' n=1 Tax=Coffea arabica
RepID=RPOC1_COFAR
Length = 683
Score = 247 bits (630), Expect = 3e-64
Identities = 125/142 (88%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI++++SLVEWKELGEE T NE WEDRKVG
Sbjct: 184 TQGFDTFRNREISTGAVAIREQLADLDLRIILENSLVEWKELGEEGPTGNE--WEDRKVG 241
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 242 RRKDFLVRRMELTKHFIRTNIEPEWMVLFLLPVLPPELRPIIQIDGGKLMSSDINELYRR 301
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 302 VIYRNNTLTDLLTTSRSTPGEL 323
[56][TOP]
>UniRef100_P46819 DNA-directed RNA polymerase subunit beta' n=1 Tax=Sinapis alba
RepID=RPOC1_SINAL
Length = 688
Score = 246 bits (629), Expect = 4e-64
Identities = 123/142 (86%), Positives = 132/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF+ FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 189 TQGFEIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 246
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 247 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 306
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 307 VIYRNNTLTDLLTTSRSTPGEL 328
[57][TOP]
>UniRef100_A9QBJ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBJ7_MUSAC
Length = 695
Score = 246 bits (628), Expect = 6e-64
Identities = 123/142 (86%), Positives = 130/142 (91%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF+TFRNREIS+GAGAIREQL D DLRI+ +SLVEWKELGEE ST NE WEDRK+
Sbjct: 193 TQGFETFRNREISTGAGAIREQLADSDLRIITGNSLVEWKELGEEGSTGNE--WEDRKIR 250
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 251 RRKDFLVRRMELAKHFIRTNVEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 310
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLL TSRSTPGEL
Sbjct: 311 VIYRNNTLTDLLATSRSTPGEL 332
[58][TOP]
>UniRef100_A4QJJ0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Aethionema
grandiflorum RepID=RPOC1_AETGR
Length = 680
Score = 246 bits (628), Expect = 6e-64
Identities = 124/142 (87%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKLLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[59][TOP]
>UniRef100_A4QLS4 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nasturtium
officinale RepID=RPOC1_NASOF
Length = 680
Score = 246 bits (627), Expect = 8e-64
Identities = 123/142 (86%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GA AIREQL DLDLRI+I++SLVEWK+LGEE T NE WEDRK+
Sbjct: 181 TQGFDIFRNREISTGASAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE--WEDRKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[60][TOP]
>UniRef100_C3KEF8 DNA-directed RNA polymerase n=1 Tax=Ceratophyllum demersum
RepID=C3KEF8_CERDE
Length = 680
Score = 245 bits (626), Expect = 1e-63
Identities = 125/141 (88%), Positives = 130/141 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREI++GAGAIREQL DLDLRI+ID SLVEWKELGEE ST NE WEDRK+
Sbjct: 181 TQGFDTFRNREIATGAGAIREQLADLDLRIIIDHSLVEWKELGEEGSTGNE--WEDRKIR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPE MVLCLLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPERMVLCLLPVLPPELRPIIQIDGGKPMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGE 425
VIYRNNTL DLLTTSRSTPGE
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGE 319
[61][TOP]
>UniRef100_A8SE82 DNA-directed RNA polymerase subunit beta' n=1 Tax=Ceratophyllum
demersum RepID=RPOC1_CERDE
Length = 680
Score = 245 bits (626), Expect = 1e-63
Identities = 125/141 (88%), Positives = 130/141 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREI++GAGAIREQL DLDLRI+ID SLVEWKELGEE ST NE WEDRK+
Sbjct: 181 TQGFDTFRNREIATGAGAIREQLADLDLRIIIDHSLVEWKELGEEGSTGNE--WEDRKIR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPE MVLCLLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNIEPERMVLCLLPVLPPELRPIIQIDGGKPMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGE 425
VIYRNNTL DLLTTSRSTPGE
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGE 319
[62][TOP]
>UniRef100_Q4FFY1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ranunculus
macranthus RepID=Q4FFY1_RANMC
Length = 688
Score = 244 bits (624), Expect = 2e-63
Identities = 123/142 (86%), Positives = 130/142 (91%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLR++ID SL+EWKELGEE NE WEDRK+G
Sbjct: 189 TQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLLEWKELGEEGPAGNE--WEDRKMG 246
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 247 RRKSFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 306
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 307 VIYRNNTLTDLLTTSRSTPGEL 328
[63][TOP]
>UniRef100_C3UNW3 DNA-directed RNA polymerase n=1 Tax=Megaleranthis saniculifolia
RepID=C3UNW3_9MAGN
Length = 680
Score = 244 bits (624), Expect = 2e-63
Identities = 123/142 (86%), Positives = 130/142 (91%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL D DLR++ DSSL+EWKELGEE T NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGASAIREQLADPDLRLITDSSLLEWKELGEEGPTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[64][TOP]
>UniRef100_A9QBA4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBA4_ELAOL
Length = 685
Score = 244 bits (624), Expect = 2e-63
Identities = 122/142 (85%), Positives = 130/142 (91%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF+TFRNREIS+GAGAIREQL D DLRI+ID+SLVEWKELG+E ST NE WEDRK+
Sbjct: 186 TQGFETFRNREISTGAGAIREQLSDSDLRIIIDNSLVEWKELGDEGSTGNE--WEDRKIR 243
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR ELAKHFIRTN+EPEWMVLCLLPVLPPELRPIIQ DGGKLMSSDINELYRR
Sbjct: 244 RRKDFLVRRTELAKHFIRTNVEPEWMVLCLLPVLPPELRPIIQTDGGKLMSSDINELYRR 303
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLL TSRSTPGEL
Sbjct: 304 VIYRNNTLTDLLATSRSTPGEL 325
[65][TOP]
>UniRef100_A1XGM9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Ranunculus
macranthus RepID=RPOC1_RANMC
Length = 680
Score = 244 bits (624), Expect = 2e-63
Identities = 123/142 (86%), Positives = 130/142 (91%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLR++ID SL+EWKELGEE NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGASAIREQLADLDLRLIIDCSLLEWKELGEEGPAGNE--WEDRKMG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKSFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[66][TOP]
>UniRef100_Q4FFY0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FFY0_TYPLA
Length = 684
Score = 243 bits (621), Expect = 4e-63
Identities = 123/142 (86%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF+TFRNREIS+GAGAIREQL D DLRI+ID+SLVEWKELG+E ST NE WEDRK+
Sbjct: 185 TPGFETFRNREISTGAGAIREQLADSDLRIIIDNSLVEWKELGDEGSTGNE--WEDRKIR 242
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 243 RRKDFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 302
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLL TSRSTPGEL
Sbjct: 303 VIYRNNTLTDLLATSRSTPGEL 324
[67][TOP]
>UniRef100_Q06GR9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Piper cenocladum
RepID=RPOC1_PIPCE
Length = 688
Score = 243 bits (620), Expect = 5e-63
Identities = 124/142 (87%), Positives = 130/142 (91%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI+ID SLVEWKELGEE ST NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGASAIREQLADLDLRIIIDRSLVEWKELGEEGSTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTN+EPE MVL LLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 239 RRKDFLVRRIELAKHFIRTNVEPERMVLSLLPVLPPELRPIIQIDGGKPMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLTTSRSTPGEL 320
[68][TOP]
>UniRef100_A7M957 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cuscuta reflexa
RepID=RPOC1_CUSRE
Length = 691
Score = 240 bits (613), Expect = 3e-62
Identities = 121/142 (85%), Positives = 127/142 (89%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDL+I +++SL+EWK LGEE NE WEDRK G
Sbjct: 188 TQGFDTFRNREISTGAGAIREQLADLDLKISLENSLLEWKYLGEEERIGNE--WEDRKAG 245
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK FLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 246 RRKGFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELYRR 305
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 306 VIYRNNTLTDLLTTSRSTPGEL 327
[69][TOP]
>UniRef100_Q3BAQ1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOC1_PHAAO
Length = 679
Score = 239 bits (610), Expect = 7e-62
Identities = 116/142 (81%), Positives = 130/142 (91%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF+TFRNREIS+GAGAIREQL D DLRI+ D+SL+EWKELG+E S NE WE++K+
Sbjct: 181 TQGFETFRNREISTGAGAIREQLADSDLRIITDNSLLEWKELGDEESAGNE--WEEKKIR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHF+RTN++PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRIELAKHFLRTNVDPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLL TSRSTPGEL
Sbjct: 299 VIYRNNTLTDLLATSRSTPGEL 320
[70][TOP]
>UniRef100_Q7YJX9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOC1_CALFG
Length = 678
Score = 238 bits (608), Expect = 1e-61
Identities = 121/141 (85%), Positives = 127/141 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL D DLRI+ D SLVEWKELGEE ST NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGASAIREQLADPDLRIITDHSLVEWKELGEEGSTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRIELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGE 425
VIYRNNTL D LTTS STPGE
Sbjct: 299 VIYRNNTLTDPLTTSTSTPGE 319
[71][TOP]
>UniRef100_A6MM27 DNA-directed RNA polymerase subunit beta' n=1 Tax=Buxus microphylla
RepID=RPOC1_BUXMI
Length = 685
Score = 238 bits (607), Expect = 2e-61
Identities = 122/142 (85%), Positives = 127/142 (89%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL D DLRI+ D SL EWKELGEE T NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADPDLRIITDYSLGEWKELGEEGPTGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRT +EPE MVLCLLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTKVEPERMVLCLLPVLPPELRPIIQIDGGKSMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLIDLLTTSRSTP EL
Sbjct: 299 VIYRNNTLIDLLTTSRSTPREL 320
[72][TOP]
>UniRef100_A6MMT5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Illicium
oligandrum RepID=RPOC1_ILLOL
Length = 689
Score = 238 bits (606), Expect = 2e-61
Identities = 120/142 (84%), Positives = 128/142 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL D DLRI++D SLVEWKELGEE ST N WEDRK+G
Sbjct: 188 TQGFDTFRNREISTGASAIREQLADPDLRIIMDRSLVEWKELGEEGSTGNA--WEDRKIG 245
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLV+RMELAKHF+RTN+EPE MVLCLLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 246 RRKDFLVKRMELAKHFLRTNVEPERMVLCLLPVLPPELRPIIQIDGGKPMSSDINELYRR 305
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL D LTTSRSTPGEL
Sbjct: 306 VIYRNNTLTDPLTTSRSTPGEL 327
[73][TOP]
>UniRef100_Q06H06 DNA-directed RNA polymerase subunit beta' n=1 Tax=Drimys
granadensis RepID=RPOC1_DRIGR
Length = 681
Score = 238 bits (606), Expect = 2e-61
Identities = 121/141 (85%), Positives = 126/141 (89%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL D DLRI+ D SLVEWKELGEE S NE WEDRK+G
Sbjct: 181 TQGFDTFRNREISTGASAIREQLADPDLRIITDHSLVEWKELGEEGSAGNE--WEDRKIG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKPMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGE 425
VIYRNNTL D LTTSRSTPGE
Sbjct: 299 VIYRNNTLTDPLTTSRSTPGE 319
[74][TOP]
>UniRef100_Q2VEI5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Solanum tuberosum
RepID=RPOC1_SOLTU
Length = 687
Score = 237 bits (604), Expect = 3e-61
Identities = 116/142 (81%), Positives = 131/142 (92%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREI +GAGAIREQL DLDLRI+I++SLVEW+ELGEE H NEWEDRKVG
Sbjct: 187 TKGFDTFRNREIYTGAGAIREQLADLDLRIIIENSLVEWEELGEEG--HTGNEWEDRKVG 244
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFI++NI+P+WMV CLLPVLPPELRPII+IDGGKLMSSDI+ELYR+
Sbjct: 245 RRKDFLVRRVELAKHFIQSNIDPQWMVWCLLPVLPPELRPIIRIDGGKLMSSDISELYRK 304
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLL TS+STPGEL
Sbjct: 305 VIYRNNTLTDLLRTSKSTPGEL 326
[75][TOP]
>UniRef100_Q0G9M8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Liriodendron
tulipifera RepID=RPOC1_LIRTU
Length = 681
Score = 237 bits (604), Expect = 3e-61
Identities = 120/141 (85%), Positives = 126/141 (89%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T FDTFRNREIS+GAGAI+EQL D DLRI+ D SLVEWKELGEE S NEWEDRK+G
Sbjct: 181 TQDFDTFRNREISTGAGAIKEQLADPDLRIITDHSLVEWKELGEEGSADG-NEWEDRKIG 239
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTN+EPE MVLCLLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 240 RRKDFLVRRMELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKPMSSDINELYRR 299
Query: 363 VIYRNNTLIDLLTTSRSTPGE 425
VIYRNNTL D LTTSRSTPGE
Sbjct: 300 VIYRNNTLTDPLTTSRSTPGE 320
[76][TOP]
>UniRef100_B2XWP0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Fagopyrum
esculentum subsp. ancestrale RepID=RPOC1_FAGEA
Length = 676
Score = 236 bits (602), Expect = 6e-61
Identities = 120/142 (84%), Positives = 124/142 (87%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA IREQL DLDLR ++DSSL EWKE NEWEDRKV
Sbjct: 181 TQGFDTFRNREISTGASTIREQLADLDLRTILDSSLSEWKE------GPTGNEWEDRKVR 234
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR
Sbjct: 235 RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 294
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTL DLLTTSRSTPGEL
Sbjct: 295 VIYRNNTLTDLLTTSRSTPGEL 316
[77][TOP]
>UniRef100_A9QC66 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trachelium caeruleum
RepID=A9QC66_TRACE
Length = 689
Score = 234 bits (596), Expect = 3e-60
Identities = 118/142 (83%), Positives = 129/142 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAG+IREQL DLDLR + +SSL+EWKEL +E T NE WED+KV
Sbjct: 188 TQGFDTFRNREISTGAGSIREQLADLDLRKIRNSSLLEWKELSKEGPTGNE--WEDQKVR 245
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRM LAKHFIRTNIEPEWMVLCLLPVLPPELRPII+IDGGKLMSSDINELYRR
Sbjct: 246 RRKDFLVRRMGLAKHFIRTNIEPEWMVLCLLPVLPPELRPIIEIDGGKLMSSDINELYRR 305
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI+RNNTLI+LLTTSR TPGEL
Sbjct: 306 VIFRNNTLINLLTTSRFTPGEL 327
[78][TOP]
>UniRef100_A6MMB3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Chloranthus
spicatus RepID=RPOC1_CHLSC
Length = 688
Score = 233 bits (594), Expect = 5e-60
Identities = 118/141 (83%), Positives = 126/141 (89%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL D DLR + D SLVEWKELGE+ ST NE WEDRK+G
Sbjct: 185 TQGFDTFRNREISTGAGAIREQLADPDLRTITDHSLVEWKELGEKGSTGNE--WEDRKIG 242
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAK+ IRTN+EPEWMVL LLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 243 RRKDFLVRRLELAKNLIRTNVEPEWMVLRLLPVLPPELRPIIQIDGGKPMSSDINELYRR 302
Query: 363 VIYRNNTLIDLLTTSRSTPGE 425
VIYRNNTL D LTTSRSTPGE
Sbjct: 303 VIYRNNTLTDPLTTSRSTPGE 323
[79][TOP]
>UniRef100_P60287 DNA-directed RNA polymerase subunit beta' n=1 Tax=Amborella
trichopoda RepID=RPOC1_AMBTC
Length = 680
Score = 232 bits (591), Expect = 1e-59
Identities = 118/141 (83%), Positives = 126/141 (89%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T F+ FRNREIS+GAGAIREQL D DLRI+ D SLVEWKELGEERS ENEWED+K+
Sbjct: 181 TQCFNLFRNREISTGAGAIREQLADPDLRIITDRSLVEWKELGEERSA--ENEWEDKKIV 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRRMELAKH +RTN+EPE MVLCLLPVLPPELRPIIQIDGGK MSSDINELYRR
Sbjct: 239 RRKDFLVRRMELAKHLLRTNVEPERMVLCLLPVLPPELRPIIQIDGGKPMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGE 425
VIYRNNTLID LTTSRSTPGE
Sbjct: 299 VIYRNNTLIDPLTTSRSTPGE 319
[80][TOP]
>UniRef100_A6MMJ8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Dioscorea
elephantipes RepID=RPOC1_DIOEL
Length = 685
Score = 231 bits (589), Expect = 2e-59
Identities = 113/139 (81%), Positives = 126/139 (90%)
Frame = +3
Query: 12 FDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRK 191
F+TFRNREIS+GAGAIREQL D DL+I++++SLVEWKELG+E NEWEDRK+ RRK
Sbjct: 185 FETFRNREISTGAGAIREQLADSDLQIILNNSLVEWKELGDEEVIGTGNEWEDRKIRRRK 244
Query: 192 NFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIY 371
+FLV+RMELAKHFIRTN+EP+ MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIY
Sbjct: 245 DFLVKRMELAKHFIRTNVEPKRMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIY 304
Query: 372 RNNTLIDLLTTSRSTPGEL 428
RNNTL DLL TSRS PGEL
Sbjct: 305 RNNTLTDLLATSRSMPGEL 323
[81][TOP]
>UniRef100_A9QBS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Passiflora biflora
RepID=A9QBS1_PASBI
Length = 679
Score = 228 bits (581), Expect = 2e-58
Identities = 114/141 (80%), Positives = 128/141 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GAGAIREQL DLDL+I+ID S VEWKELGE+ ST NE W+D KV
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLQIIIDYSSVEWKELGEKGSTGNE--WKDLKVR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAKHFIRTNI+PEWMVLCLLPVLPP+LRPIIQIDGGKL+SSDINELYRR
Sbjct: 239 RRKDFLVRRVELAKHFIRTNIQPEWMVLCLLPVLPPDLRPIIQIDGGKLISSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGE 425
VIYRN+TL DLLT S+S+ G+
Sbjct: 299 VIYRNSTLTDLLTKSQSSSGD 319
[82][TOP]
>UniRef100_Q06RE0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Jasminum
nudiflorum RepID=RPOC1_JASNU
Length = 691
Score = 226 bits (575), Expect = 8e-58
Identities = 113/140 (80%), Positives = 125/140 (89%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
GFDTFRNREIS+GAGAIREQLVDLDLRI++D+SLVEWKELGEE T NE WED+KV RR
Sbjct: 183 GFDTFRNREISTGAGAIREQLVDLDLRIILDNSLVEWKELGEEGPTGNE--WEDQKVRRR 240
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
+ FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPP+LRP+IQI GK+MSSDI +LY+RVI
Sbjct: 241 RGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPDLRPVIQIAEGKVMSSDITKLYQRVI 300
Query: 369 YRNNTLIDLLTTSRSTPGEL 428
YRN L DLLT S STPG+L
Sbjct: 301 YRNKILTDLLTRSVSTPGDL 320
[83][TOP]
>UniRef100_B2LMI1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Guizotia
abyssinica RepID=RPOC1_GUIAB
Length = 696
Score = 221 bits (563), Expect = 2e-56
Identities = 109/142 (76%), Positives = 124/142 (87%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T FDTFRNRE+S+G G+IR+QL +LDLR++ID SLVEWKEL EE T NE WEDRKVG
Sbjct: 188 TRSFDTFRNREMSTGGGSIRQQLANLDLRMIIDYSLVEWKELEEEEPTGNE--WEDRKVG 245
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FL+RRMELAKHFIRTNIEP+WMVLCLLPVLPPELRPI ID KL++SDINE+YRR
Sbjct: 246 RRKDFLLRRMELAKHFIRTNIEPKWMVLCLLPVLPPELRPIYHIDEDKLVTSDINEIYRR 305
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
+IYRNNTL DLLTTS +TP EL
Sbjct: 306 IIYRNNTLTDLLTTSIATPEEL 327
[84][TOP]
>UniRef100_Q1KXX1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Helianthus annuus
RepID=RPOC1_HELAN
Length = 689
Score = 218 bits (556), Expect = 1e-55
Identities = 109/142 (76%), Positives = 124/142 (87%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T FDTFRNRE+S+G G+IR+QL +LDLR++ID SLVEWKEL EE ST NE WEDRKVG
Sbjct: 181 TRSFDTFRNREMSTGGGSIRQQLANLDLRMIIDYSLVEWKELEEEESTGNE--WEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FL+RRMELAKHFIRTNIEP+WMVL LLPVLPPELRPI ID KL++SDINE+YRR
Sbjct: 239 RRKDFLLRRMELAKHFIRTNIEPKWMVLRLLPVLPPELRPIYHIDEDKLVTSDINEIYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
+IYRNNTL DLLTTS +TP EL
Sbjct: 299 IIYRNNTLTDLLTTSIATPEEL 320
[85][TOP]
>UniRef100_Q56P12 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lactuca sativa
RepID=RPOC1_LACSA
Length = 689
Score = 218 bits (554), Expect = 2e-55
Identities = 109/142 (76%), Positives = 123/142 (86%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T FDTFRNRE+S+G G+IR+QL +LDLRI+ID SLVEWKEL EE T NE WEDRKVG
Sbjct: 181 TRSFDTFRNREMSTGGGSIRQQLANLDLRIIIDYSLVEWKELEEEEPTGNE--WEDRKVG 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FL+RRMELAKHFIRTNIEP+WMVL LLPVLPPELRPI ID KL++SDINE+YRR
Sbjct: 239 RRKDFLLRRMELAKHFIRTNIEPKWMVLRLLPVLPPELRPIYHIDEDKLVTSDINEIYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
+IYRNNTL DLLTTS +TP EL
Sbjct: 299 IIYRNNTLTDLLTTSIATPEEL 320
[86][TOP]
>UniRef100_A9QBZ3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QBZ3_9ASTR
Length = 680
Score = 214 bits (544), Expect = 3e-54
Identities = 111/142 (78%), Positives = 123/142 (86%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+G+GAIREQL DLDLR +ID SLVEWKELGEE T NE WEDR V
Sbjct: 181 TQGFDTFRNREISTGSGAIREQLADLDLRSLIDHSLVEWKELGEEGLTGNE--WEDRIVE 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FLVRR+ELAK+FI+TN+EP+WMVL LLPVLPP+LRPI Q D GKLMSSDINELYRR
Sbjct: 239 RRKDFLVRRIELAKYFIQTNLEPQWMVLRLLPVLPPDLRPIFQTDRGKLMSSDINELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
+I RNNTLIDLL S+ TPGEL
Sbjct: 299 IILRNNTLIDLL-ASKFTPGEL 319
[87][TOP]
>UniRef100_Q49C96 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuscuta europaea
RepID=Q49C96_CUSEU
Length = 468
Score = 211 bits (537), Expect = 2e-53
Identities = 104/131 (79%), Positives = 118/131 (90%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
IS GA A+REQL DLDLR++ ++SL+EWK+LGE++ T NE WED+K RRK FLVRRM+
Sbjct: 1 ISMGACAVREQLADLDLRMIAENSLLEWKDLGEKKRTGNE--WEDQKATRRKAFLVRRMD 58
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
LAKHFIRTNIEPEWMVLCLLPV+PPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL +L
Sbjct: 59 LAKHFIRTNIEPEWMVLCLLPVIPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTNL 118
Query: 396 LTTSRSTPGEL 428
L TS+STPGEL
Sbjct: 119 LKTSKSTPGEL 129
[88][TOP]
>UniRef100_C6GJ47 DNA-directed RNA polymerase n=2 Tax=Bambuseae RepID=C6GJ47_BAMOL
Length = 682
Score = 193 bits (490), Expect = 6e-48
Identities = 97/142 (68%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[89][TOP]
>UniRef100_B8Y2W5 DNA-directed RNA polymerase n=1 Tax=Festuca arundinacea
RepID=B8Y2W5_FESAR
Length = 674
Score = 193 bits (490), Expect = 6e-48
Identities = 97/142 (68%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[90][TOP]
>UniRef100_B2ZEA0 DNA-directed RNA polymerase n=1 Tax=Phyllostachys propinqua
RepID=B2ZEA0_9POAL
Length = 682
Score = 193 bits (490), Expect = 6e-48
Identities = 97/142 (68%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[91][TOP]
>UniRef100_Q9XPS8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Triticum aestivum
RepID=RPOC1_WHEAT
Length = 683
Score = 193 bits (490), Expect = 6e-48
Identities = 97/142 (68%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[92][TOP]
>UniRef100_A1E9R5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Sorghum bicolor
RepID=RPOC1_SORBI
Length = 683
Score = 193 bits (490), Expect = 6e-48
Identities = 97/142 (68%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[93][TOP]
>UniRef100_Q6L3A6 DNA-directed RNA polymerase subunit beta' n=2 Tax=Saccharum
RepID=RPOC1_SACHY
Length = 683
Score = 193 bits (490), Expect = 6e-48
Identities = 97/142 (68%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[94][TOP]
>UniRef100_P16024 DNA-directed RNA polymerase subunit beta' n=1 Tax=Zea mays
RepID=RPOC1_MAIZE
Length = 683
Score = 193 bits (490), Expect = 6e-48
Identities = 97/142 (68%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[95][TOP]
>UniRef100_A8Y9G1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lolium perenne
RepID=RPOC1_LOLPR
Length = 676
Score = 193 bits (490), Expect = 6e-48
Identities = 97/142 (68%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[96][TOP]
>UniRef100_A1E9I2 DNA-directed RNA polymerase subunit beta' n=1 Tax=Hordeum vulgare
RepID=RPOC1_HORVU
Length = 682
Score = 193 bits (490), Expect = 6e-48
Identities = 97/142 (68%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[97][TOP]
>UniRef100_A1E9Z9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Agrostis
stolonifera RepID=RPOC1_AGRST
Length = 682
Score = 193 bits (490), Expect = 6e-48
Identities = 97/142 (68%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[98][TOP]
>UniRef100_A9QB28 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cycas micronesica
RepID=A9QB28_9SPER
Length = 687
Score = 192 bits (488), Expect = 1e-47
Identities = 94/140 (67%), Positives = 116/140 (82%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
GF FR+REI++G AIREQL L+L+I++D S +EWK LG+++S N W DRK+ RR
Sbjct: 189 GFGAFRHREIATGGDAIREQLAGLNLQILMDRSYMEWKRLGKQKSAGNG--WGDRKIQRR 246
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
K+F VRRM+LAKHF++T+IEPEWMVLC LPVLPPELRPI+Q+ GG+L++SD NELYRRVI
Sbjct: 247 KDFSVRRMKLAKHFLQTDIEPEWMVLCPLPVLPPELRPIVQLGGGELITSDPNELYRRVI 306
Query: 369 YRNNTLIDLLTTSRSTPGEL 428
YRNNTL DLL SRSTPG L
Sbjct: 307 YRNNTLTDLLARSRSTPGGL 326
[99][TOP]
>UniRef100_A6H5F8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cycas
taitungensis RepID=RPOC1_CYCTA
Length = 681
Score = 192 bits (488), Expect = 1e-47
Identities = 94/140 (67%), Positives = 116/140 (82%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
GF FR+REI++G AIREQL L+L+I++D S +EWK LG+++S N W DRK+ RR
Sbjct: 183 GFGAFRHREIATGGDAIREQLAGLNLQILMDRSYMEWKRLGKQKSAGNG--WGDRKIQRR 240
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
K+F VRRM+LAKHF++T+IEPEWMVLC LPVLPPELRPI+Q+ GG+L++SD NELYRRVI
Sbjct: 241 KDFSVRRMKLAKHFLQTDIEPEWMVLCPLPVLPPELRPIVQLGGGELITSDPNELYRRVI 300
Query: 369 YRNNTLIDLLTTSRSTPGEL 428
YRNNTL DLL SRSTPG L
Sbjct: 301 YRNNTLTDLLARSRSTPGGL 320
[100][TOP]
>UniRef100_C8XU08 RNA polymerase beta n=1 Tax=Coix lacryma-jobi RepID=C8XU08_COILA
Length = 683
Score = 192 bits (487), Expect = 1e-47
Identities = 96/142 (67%), Positives = 116/142 (81%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAG+IREQL DLDLRI+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFATFRNREIATGAGSIREQLADLDLRIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[101][TOP]
>UniRef100_Q8S1Q5 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q8S1Q5_ORYSJ
Length = 682
Score = 190 bits (483), Expect = 4e-47
Identities = 95/142 (66%), Positives = 115/142 (80%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI++++S VEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFTTFRNREIATGAGAIREQLADLDLRIILENSSVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[102][TOP]
>UniRef100_Q6Z1U9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q6Z1U9_ORYSJ
Length = 682
Score = 190 bits (483), Expect = 4e-47
Identities = 95/142 (66%), Positives = 115/142 (80%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI++++S VEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFTTFRNREIATGAGAIREQLADLDLRIILENSSVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[103][TOP]
>UniRef100_P0C506 DNA-directed RNA polymerase subunit beta' n=4 Tax=Oryza
RepID=RPOC1_ORYSJ
Length = 682
Score = 190 bits (483), Expect = 4e-47
Identities = 95/142 (66%), Positives = 115/142 (80%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF TFRNREI++GAGAIREQL DLDLRI++++S VEWKEL +E ++ +EWEDRK
Sbjct: 181 TPGFTTFRNREIATGAGAIREQLADLDLRIILENSSVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[104][TOP]
>UniRef100_B3TN43 DNA-directed RNA polymerase subunit beta' n=1 Tax=Brachypodium
distachyon RepID=RPOC1_BRADI
Length = 682
Score = 189 bits (481), Expect = 6e-47
Identities = 95/142 (66%), Positives = 115/142 (80%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T F TFRNREI++GAGAIREQL DLDL+I+I++SLVEWKEL +E ++ +EWEDRK
Sbjct: 181 TPSFTTFRNREIATGAGAIREQLADLDLQIIIENSLVEWKELEDEG--YSGDEWEDRKRR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM+LAKHFI+TN+EPEWMVLCLLPVLPPELRPI+ G K+++SDINELY+R
Sbjct: 239 IRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VI RNN L LL S P +L
Sbjct: 299 VIRRNNNLAYLLKRSELAPADL 320
[105][TOP]
>UniRef100_B7T381 DNA-directed RNA polymerase n=1 Tax=Geranium carolinianum
RepID=B7T381_9ROSI
Length = 495
Score = 188 bits (477), Expect = 2e-46
Identities = 100/140 (71%), Positives = 113/140 (80%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
G TFR EIS+GAGAIREQL DLDLR++IDSSL EWKEL EE T +E WEDRK+ RR
Sbjct: 183 GLHTFR--EISTGAGAIREQLGDLDLRVIIDSSLAEWKELEEEGLTGDE--WEDRKIERR 238
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
K FLVRRM LAKHFIRTN+EPEWMVLCLLPVLPP LRP +QI K M SDIN+LY RV+
Sbjct: 239 KRFLVRRMGLAKHFIRTNVEPEWMVLCLLPVLPPGLRPAVQIGELKRMGSDINDLYGRVL 298
Query: 369 YRNNTLIDLLTTSRSTPGEL 428
RNN L+DLLT +STPG++
Sbjct: 299 SRNNDLLDLLTI-QSTPGDV 317
[106][TOP]
>UniRef100_B7T3M3 DNA-directed RNA polymerase n=1 Tax=Geranium palmatum
RepID=B7T3M3_9ROSI
Length = 683
Score = 187 bits (474), Expect = 4e-46
Identities = 99/140 (70%), Positives = 112/140 (80%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
G TF NREIS+GAGAIREQL DLDLR++IDSSL EWKEL E T +E WEDRK+ R
Sbjct: 183 GLHTFGNREISTGAGAIREQLGDLDLRVIIDSSLAEWKELKEGGLTGDE--WEDRKIETR 240
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
K FLVRRM LAKHFIRTN+EPEWMVLCLLPVLPPELRP +QI KLM SDIN+LY RV+
Sbjct: 241 KRFLVRRMGLAKHFIRTNVEPEWMVLCLLPVLPPELRPGVQIAELKLMGSDINKLYGRVL 300
Query: 369 YRNNTLIDLLTTSRSTPGEL 428
RNN L+ LLT +STP ++
Sbjct: 301 SRNNDLLHLLTI-QSTPEDV 319
[107][TOP]
>UniRef100_P60288 DNA-directed RNA polymerase subunit beta' n=1 Tax=Physcomitrella
patens RepID=RPOC1_PHYPA
Length = 679
Score = 186 bits (473), Expect = 5e-46
Identities = 90/142 (63%), Positives = 119/142 (83%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
+ GF+ F+N+EI++G AI++QL +LDL+ V+D + +EWKEL E++ST NE WEDRK+
Sbjct: 178 SRGFEAFQNKEIATGGDAIKKQLSNLDLQGVLDYAYIEWKELVEQKSTGNE--WEDRKIQ 235
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+ LVRR++LAK F++TNI+PEWMVL LLPVLPPELRP+I++ G+L++SD+NELYRR
Sbjct: 236 RRKDLLVRRIKLAKQFLQTNIKPEWMVLSLLPVLPPELRPMIELGEGELITSDLNELYRR 295
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLID L S STPG L
Sbjct: 296 VIYRNNTLIDFLARSGSTPGGL 317
[108][TOP]
>UniRef100_P06273 DNA-directed RNA polymerase subunit beta' n=1 Tax=Marchantia
polymorpha RepID=RPOC1_MARPO
Length = 684
Score = 186 bits (472), Expect = 7e-46
Identities = 90/140 (64%), Positives = 118/140 (84%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
GF+ F+NREI++G AI++QL +L+L+ VI+ + +EWKE E++ST NE WEDRK+ RR
Sbjct: 183 GFEVFQNREIATGGDAIQKQLTNLNLQNVINLAHLEWKEFAEQKSTGNE--WEDRKIQRR 240
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
K+ LVRR++LAKHFI+TNI+PEWMVL LLPVLPPELRP+I++ G+L++SD+NELYRRVI
Sbjct: 241 KDLLVRRIKLAKHFIQTNIKPEWMVLSLLPVLPPELRPMIELGEGELITSDLNELYRRVI 300
Query: 369 YRNNTLIDLLTTSRSTPGEL 428
YRNNTL+D L S STPG L
Sbjct: 301 YRNNTLLDFLARSGSTPGGL 320
[109][TOP]
>UniRef100_Q4FFY3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FFY3_GINBI
Length = 684
Score = 185 bits (470), Expect = 1e-45
Identities = 92/140 (65%), Positives = 113/140 (80%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
GF F+NREI++G AIREQL DLRI++ +S +EWK L E++ST NE WED K+ RR
Sbjct: 186 GFGAFQNREIATGGDAIREQLAGPDLRILMANSYMEWKILEEQKSTGNE--WEDEKIQRR 243
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
K+F VRRMELAKHFI+TNIEPEWMVLCLLPVLPPE RPI+Q+ G+L++SD+NELYR+VI
Sbjct: 244 KDFSVRRMELAKHFIQTNIEPEWMVLCLLPVLPPEPRPIVQLSEGELITSDLNELYRKVI 303
Query: 369 YRNNTLIDLLTTSRSTPGEL 428
+RNNTL +L S S PG L
Sbjct: 304 HRNNTLTNLSARSGSAPGGL 323
[110][TOP]
>UniRef100_B9VH98 DNA-directed RNA polymerase n=1 Tax=Syntrichia ruralis
RepID=B9VH98_TORRU
Length = 679
Score = 183 bits (465), Expect = 5e-45
Identities = 89/142 (62%), Positives = 117/142 (82%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
+ GF+ F+ REI++G AI +QL +LDL++V+DS+ EWKEL E++ST N+ WEDRK+
Sbjct: 178 SRGFEAFQIREIATGGNAIEKQLSNLDLQLVMDSAYAEWKELVEQKSTGND--WEDRKIQ 235
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+ LVRR++LAK F++TNI+PEWMVL LLPVLPPELRP+I++ G+L++SD+NELYRR
Sbjct: 236 RRKDLLVRRIKLAKQFLQTNIKPEWMVLSLLPVLPPELRPMIELGEGELITSDLNELYRR 295
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLID S STPG L
Sbjct: 296 VIYRNNTLIDFSARSGSTPGGL 317
[111][TOP]
>UniRef100_Q85CL6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Anthoceros
formosae RepID=RPOC1_ANTFO
Length = 681
Score = 182 bits (463), Expect = 8e-45
Identities = 86/140 (61%), Positives = 116/140 (82%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
GF+ F++RE+++G AI + L L+L+IV+D + +EW+ L E++ST NE WEDRK+ RR
Sbjct: 183 GFEAFQDREVATGGNAIEKGLASLNLQIVMDRAYMEWRNLTEQKSTGNE--WEDRKIQRR 240
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
K+ LVRRMELAK+F++TN++PEWMVL LLPVLPPELRP+I++ G+L++SD+NELYRRVI
Sbjct: 241 KDLLVRRMELAKNFLQTNMKPEWMVLSLLPVLPPELRPMIELGEGELITSDLNELYRRVI 300
Query: 369 YRNNTLIDLLTTSRSTPGEL 428
YRNNTL+D L RSTPG L
Sbjct: 301 YRNNTLLDFLARGRSTPGGL 320
[112][TOP]
>UniRef100_B7T415 DNA-directed RNA polymerase n=1 Tax=Monsonia vanderietiae
RepID=B7T415_9ROSI
Length = 698
Score = 179 bits (455), Expect = 7e-44
Identities = 91/136 (66%), Positives = 108/136 (79%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T+GFDTFRNREI +GAG IREQL DLDLR++ DSSL EWK+L E T N ++ DRK+
Sbjct: 181 TYGFDTFRNREIPTGAGGIREQLGDLDLRVIRDSSLAEWKKLKERGPTGNLSK--DRKLE 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM LAKH I+TN+EPEWMVLCLLPVLPPELRP+ +D K+M++DIN LYRR
Sbjct: 239 TRKRFLLRRMGLAKHLIQTNVEPEWMVLCLLPVLPPELRPMFWLDEDKVMATDINILYRR 298
Query: 363 VIYRNNTLIDLLTTSR 410
VI RNN L+ LL T R
Sbjct: 299 VISRNNALLKLLRTRR 314
[113][TOP]
>UniRef100_B7T3F2 DNA-directed RNA polymerase n=1 Tax=Geranium macrorrhizum
RepID=B7T3F2_9ROSI
Length = 683
Score = 179 bits (453), Expect = 1e-43
Identities = 96/140 (68%), Positives = 110/140 (78%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
G TF NREIS+GAGAIREQL DLDLR++I+SSL EWKEL E T +E WEDRK+ R
Sbjct: 183 GLHTFENREISTGAGAIREQLGDLDLRVIINSSLSEWKELKEGGLTGDE--WEDRKIETR 240
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
K FLVRRM LAK FIRTN+EPEWMVL LLPVLPPELRP +QI KLM SDIN+LY RV+
Sbjct: 241 KRFLVRRMGLAKDFIRTNVEPEWMVLSLLPVLPPELRPGVQIAEPKLMGSDINKLYGRVL 300
Query: 369 YRNNTLIDLLTTSRSTPGEL 428
RNN L+ LLT +STP ++
Sbjct: 301 LRNNDLLHLLTI-QSTPEDV 319
[114][TOP]
>UniRef100_B7T3U4 DNA-directed RNA polymerase n=1 Tax=Monsonia speciosa
RepID=B7T3U4_9ROSI
Length = 696
Score = 178 bits (451), Expect = 2e-43
Identities = 89/136 (65%), Positives = 108/136 (79%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T+GFDTFRNREI +GAG IREQLVDLDLR++ DSSL EWK+L E T N ++ DRK+
Sbjct: 181 TYGFDTFRNREIPTGAGGIREQLVDLDLRVIRDSSLAEWKKLKERGPTGNVSK--DRKME 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RK FL+RRM AKH I+TN+EPEWMVLCLLPVLPPELRP++ +D K+M++DIN LYR+
Sbjct: 239 TRKRFLLRRMGFAKHLIQTNVEPEWMVLCLLPVLPPELRPMLWLDEDKVMATDINILYRQ 298
Query: 363 VIYRNNTLIDLLTTSR 410
VI RNN L+ LL R
Sbjct: 299 VISRNNALLKLLRKRR 314
[115][TOP]
>UniRef100_A2T323 DNA-directed RNA polymerase subunit beta' n=1 Tax=Angiopteris
evecta RepID=RPOC1_ANGEV
Length = 687
Score = 174 bits (442), Expect = 2e-42
Identities = 82/139 (58%), Positives = 111/139 (79%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF+ F+ REI++G AI++QL LDL+ V +S+ +EWKEL E ST E+EWED+ +
Sbjct: 185 TRGFEIFQGREIATGGHAIKKQLASLDLKSVFNSAYLEWKELSEVEST--EDEWEDQTIQ 242
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+FL+RRM+L+KHF+ TNI+PEWMVL +LPVLPPELRP+I++ G +++SD NELYR+
Sbjct: 243 RRKDFLIRRMKLSKHFLHTNIKPEWMVLDVLPVLPPELRPMIELSEGDVITSDFNELYRK 302
Query: 363 VIYRNNTLIDLLTTSRSTP 419
+IYRNN L+DLL S TP
Sbjct: 303 IIYRNNILLDLLLKSAFTP 321
[116][TOP]
>UniRef100_B0YPL9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Aneura mirabilis
RepID=RPOC1_ANEMR
Length = 699
Score = 174 bits (440), Expect = 4e-42
Identities = 83/137 (60%), Positives = 112/137 (81%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
GF+ FR+REI++G AI++QL+DLDL+ V+ + EW+EL ++ ST + W DRK+ R
Sbjct: 183 GFEIFRDREIATGGDAIKKQLIDLDLQSVMSHAHSEWEELTKQESTGTD--WGDRKIQRN 240
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
K+ LVRRM+L+K+F++TNIEPEWMVL LLPVLPPELRP+I++ G+L++SD+NELYRRVI
Sbjct: 241 KDLLVRRMKLSKYFVQTNIEPEWMVLSLLPVLPPELRPMIELGEGELITSDLNELYRRVI 300
Query: 369 YRNNTLIDLLTTSRSTP 419
YRNNTL+D L S STP
Sbjct: 301 YRNNTLLDFLARSDSTP 317
[117][TOP]
>UniRef100_Q8WI25 DNA-directed RNA polymerase subunit beta' n=1 Tax=Psilotum nudum
RepID=RPOC1_PSINU
Length = 674
Score = 172 bits (435), Expect = 1e-41
Identities = 78/139 (56%), Positives = 111/139 (79%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF+ F++REI++G A+R++L L+L+ V++ + +EWK+L +++ T NE WEDR +
Sbjct: 186 TRGFEAFKSREIATGGDAVRKELASLNLKTVMECTYLEWKDLAKQKPTGNE--WEDRGIQ 243
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
R K+F+VRR+ L KHF+ T+++PEWMVL LLPVLPPELRP+I++ GG L++SD+NELYR+
Sbjct: 244 RIKDFMVRRIRLVKHFLYTDVKPEWMVLSLLPVLPPELRPMIEVSGGLLLTSDLNELYRK 303
Query: 363 VIYRNNTLIDLLTTSRSTP 419
VIYRNNTLID L S TP
Sbjct: 304 VIYRNNTLIDFLLRSEFTP 322
[118][TOP]
>UniRef100_C3VYL0 DNA-directed RNA polymerase n=1 Tax=Pinus taeda RepID=C3VYL0_PINTA
Length = 696
Score = 167 bits (423), Expect = 3e-40
Identities = 86/143 (60%), Positives = 108/143 (75%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + + WE
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVELKWNRLEENQEYTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LLT S S
Sbjct: 310 NELYRRVINRNNTLTNLLTKSGS 332
[119][TOP]
>UniRef100_B7T485 DNA-directed RNA polymerase n=1 Tax=Pelargonium cotyledonis
RepID=B7T485_9ROSI
Length = 689
Score = 167 bits (423), Expect = 3e-40
Identities = 85/142 (59%), Positives = 107/142 (75%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF FRNREIS+GAGAIREQL DLDLR++IDSSL EWK L EE E+E + R+
Sbjct: 186 TKGFLKFRNREISAGAGAIREQLADLDLRVIIDSSLAEWKVLKEEGKEGTESEIQKRE-- 243
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK FL+RR+ELAKH + TN++PEWMVLCLLPVLPP+LRPI +I + +SSDIN+LY++
Sbjct: 244 RRKRFLIRRIELAKHLLLTNVKPEWMVLCLLPVLPPKLRPIFKISEVQSISSDINKLYQK 303
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
V+ +N LL +S+ P L
Sbjct: 304 VLKKNQAFHRLLISSKYAPSSL 325
[120][TOP]
>UniRef100_C3VZN7 DNA-directed RNA polymerase n=1 Tax=Pinus aristata
RepID=C3VZN7_9CONI
Length = 696
Score = 167 bits (422), Expect = 4e-40
Identities = 86/143 (60%), Positives = 107/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G +TF+ REI++G AI EQL LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSETFKEREIATGGDAIGEQLTGLDLQMIIDRSHMEWKNLVELKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL+ S S
Sbjct: 310 NELYRRVINRNNTLTNLLSRSGS 332
[121][TOP]
>UniRef100_C3VXL1 DNA-directed RNA polymerase n=3 Tax=Pinus RepID=C3VXL1_PINPO
Length = 696
Score = 166 bits (420), Expect = 8e-40
Identities = 86/143 (60%), Positives = 107/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVEFKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LLT S S
Sbjct: 310 NELYRRVINRNNTLTNLLTRSGS 332
[122][TOP]
>UniRef100_C3TS83 DNA-directed RNA polymerase n=1 Tax=Pinus krempfii
RepID=C3TS83_PINKR
Length = 696
Score = 166 bits (420), Expect = 8e-40
Identities = 86/143 (60%), Positives = 105/143 (73%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI EQL LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGEQLTGLDLQMIIDRSYMEWKNLVELKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[123][TOP]
>UniRef100_C1IXE8 DNA-directed RNA polymerase n=1 Tax=Picea sitchensis
RepID=C1IXE8_PICSI
Length = 696
Score = 166 bits (419), Expect = 1e-39
Identities = 87/143 (60%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENE-------WE 167
G TF+ REI++G AIREQL LDL+I+ID S +EWK L E + E + WE
Sbjct: 190 GSGTFQEREIATGGDAIREQLTGLDLQIIIDRSHMEWKNLVELKWNRLEEDQESTVDGWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D + RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DETIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[124][TOP]
>UniRef100_C3VXW8 DNA-directed RNA polymerase n=1 Tax=Pinus rzedowskii
RepID=C3VXW8_PINRZ
Length = 696
Score = 165 bits (418), Expect = 1e-39
Identities = 86/143 (60%), Positives = 105/143 (73%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI EQL LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGEQLTGLDLQMIIDRSHMEWKNLVELKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[125][TOP]
>UniRef100_C1IXS8 DNA-directed RNA polymerase n=2 Tax=Strobus RepID=C1IXS8_PINGE
Length = 696
Score = 165 bits (418), Expect = 1e-39
Identities = 86/143 (60%), Positives = 105/143 (73%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI EQL LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGEQLTGLDLQMIIDRSHMEWKNLVELKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[126][TOP]
>UniRef100_C3W0R3 DNA-directed RNA polymerase n=1 Tax=Cedrus deodara
RepID=C3W0R3_CEDDE
Length = 696
Score = 164 bits (416), Expect = 2e-39
Identities = 86/143 (60%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENE-------WE 167
G TF+ REI++G AIREQL LDL+++ID S +EWK L E + E + WE
Sbjct: 190 GSVTFQEREIATGGDAIREQLTGLDLQMIIDRSYMEWKNLVELKWNRLEEDQESTVDGWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D + RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DETIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[127][TOP]
>UniRef100_C1IXL0 DNA-directed RNA polymerase n=2 Tax=Pinus RepID=C1IXL0_PINCO
Length = 696
Score = 164 bits (416), Expect = 2e-39
Identities = 85/143 (59%), Positives = 107/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + W+
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVELKWNRLKENQESTVDRWK 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LLT S S
Sbjct: 310 NELYRRVINRNNTLTNLLTRSGS 332
[128][TOP]
>UniRef100_C3W1T3 DNA-directed RNA polymerase n=1 Tax=Pinus merkusii
RepID=C3W1T3_9CONI
Length = 696
Score = 164 bits (415), Expect = 3e-39
Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVEFKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[129][TOP]
>UniRef100_C3W0J9 DNA-directed RNA polymerase n=1 Tax=Pinus canariensis
RepID=C3W0J9_9CONI
Length = 696
Score = 164 bits (415), Expect = 3e-39
Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVELKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[130][TOP]
>UniRef100_C3VYS9 DNA-directed RNA polymerase n=1 Tax=Pinus thunbergii
RepID=C3VYS9_PINTH
Length = 696
Score = 164 bits (415), Expect = 3e-39
Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVELKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[131][TOP]
>UniRef100_C3VXU6 DNA-directed RNA polymerase n=1 Tax=Pinus resinosa
RepID=C3VXU6_PINRE
Length = 696
Score = 164 bits (415), Expect = 3e-39
Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVELKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[132][TOP]
>UniRef100_P52733 DNA-directed RNA polymerase subunit beta' n=1 Tax=Pinus thunbergii
RepID=RPOC1_PINTH
Length = 696
Score = 164 bits (415), Expect = 3e-39
Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVELKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[133][TOP]
>UniRef100_C3W073 DNA-directed RNA polymerase n=2 Tax=Strobus RepID=C3W073_9CONI
Length = 696
Score = 164 bits (414), Expect = 4e-39
Identities = 85/143 (59%), Positives = 105/143 (73%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI EQL LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGEQLTGLDLQMIIDRSHMEWKNLVEFKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV R++LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRIKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[134][TOP]
>UniRef100_Q85WS8 DNA-directed RNA polymerase subunit beta' n=10 Tax=Strobus
RepID=RPOC1_PINKO
Length = 696
Score = 164 bits (414), Expect = 4e-39
Identities = 85/143 (59%), Positives = 105/143 (73%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI EQL LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGEQLTGLDLQMIIDRSHMEWKNLVELKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV R++LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRIKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[135][TOP]
>UniRef100_B7ZIN7 DNA-directed RNA polymerase n=1 Tax=Keteleeria davidiana
RepID=B7ZIN7_KETDA
Length = 696
Score = 163 bits (413), Expect = 5e-39
Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AIREQL L+L+++ID S +EWK L E E + + WE
Sbjct: 190 GSGTFKEREIATGGDAIREQLTGLNLQMIIDRSHMEWKNLVELKWNRLEEDQEYTVDGWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D + RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DETIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[136][TOP]
>UniRef100_C3W1R9 DNA-directed RNA polymerase n=1 Tax=Larix occidentalis
RepID=C3W1R9_LAROX
Length = 696
Score = 163 bits (412), Expect = 6e-39
Identities = 85/143 (59%), Positives = 105/143 (73%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENE-------WE 167
G TF+ REI++G AIREQL LDL+++ID S +EWK L E + E + WE
Sbjct: 190 GSGTFKEREIATGGDAIREQLTGLDLQMIIDRSHMEWKNLVELKWNRLEEDQEFTVDGWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D + RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DETIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNN L +LL S S
Sbjct: 310 NELYRRVINRNNALTNLLARSGS 332
[137][TOP]
>UniRef100_C3VZB6 DNA-directed RNA polymerase n=1 Tax=Abies firma RepID=C3VZB6_ABIFI
Length = 696
Score = 163 bits (412), Expect = 6e-39
Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENE-------WE 167
G TF+ REI++G AIREQL LDL+++ID S +EWK L E + E + WE
Sbjct: 190 GSGTFQEREIATGGDAIREQLTGLDLQMIIDRSHMEWKNLVELKWNRLEEDQESTVDGWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D + RRK+FLV R++LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DETIRRRKDFLVGRIKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[138][TOP]
>UniRef100_C3W2I0 DNA-directed RNA polymerase n=1 Tax=Pinus pinaster
RepID=C3W2I0_PINPS
Length = 696
Score = 162 bits (411), Expect = 8e-39
Identities = 84/143 (58%), Positives = 106/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + WE
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVELKWNRLEENQESTVDRWE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV R++LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRIKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LL S S
Sbjct: 310 NELYRRVINRNNTLTNLLARSGS 332
[139][TOP]
>UniRef100_C3W124 DNA-directed RNA polymerase n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W124_PINLE
Length = 696
Score = 162 bits (409), Expect = 1e-38
Identities = 85/143 (59%), Positives = 107/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + + E
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVELKWNRLEENQEYTVDRRE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LLT S S
Sbjct: 310 NELYRRVINRNNTLTNLLTRSGS 332
[140][TOP]
>UniRef100_C3W014 DNA-directed RNA polymerase n=1 Tax=Pinus attenuata
RepID=C3W014_PINAT
Length = 696
Score = 162 bits (409), Expect = 1e-38
Identities = 85/143 (59%), Positives = 107/143 (74%), Gaps = 8/143 (5%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGE-------ERSTHNENEWE 167
G TF+ REI++G AI +QL+ LDL+++ID S +EWK L E E + + E
Sbjct: 190 GSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVELKWNRLEENQEYTVDRRE 249
Query: 168 DRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDI 344
D K+ RRK+FLV RM+LAKHF+RTNIEP+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+
Sbjct: 250 DEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDL 309
Query: 345 NELYRRVIYRNNTLIDLLTTSRS 413
NELYRRVI RNNTL +LLT S S
Sbjct: 310 NELYRRVINRNNTLTNLLTRSGS 332
[141][TOP]
>UniRef100_B7T311 DNA-directed RNA polymerase n=1 Tax=Erodium texanum
RepID=B7T311_EROTE
Length = 679
Score = 162 bits (409), Expect = 1e-38
Identities = 87/135 (64%), Positives = 101/135 (74%), Gaps = 2/135 (1%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T G T EI +GAG+IREQL DLDLR++IDSSL EWKEL EE T +E WED+K
Sbjct: 181 TQGLHT---HEIYTGAGSIREQLGDLDLRVIIDSSLAEWKELEEEGLTGDE--WEDQKKE 235
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQID--GGKLMSSDINELY 356
RRK FLVRRM LAKHFI+TN++PEWMVLCLLPVLPP LRP + +D K M SDIN+LY
Sbjct: 236 RRKRFLVRRMGLAKHFIQTNVKPEWMVLCLLPVLPPGLRPALHLDEFQSKPMGSDINQLY 295
Query: 357 RRVIYRNNTLIDLLT 401
RV+ RNN L+ LT
Sbjct: 296 LRVLSRNNALLAFLT 310
[142][TOP]
>UniRef100_C5HY45 DNA-directed RNA polymerase n=1 Tax=Alsophila spinulosa
RepID=C5HY45_9FILI
Length = 687
Score = 158 bits (399), Expect = 2e-37
Identities = 75/139 (53%), Positives = 108/139 (77%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T F+ + EI++G AI+++L LDL+ V+D + +EW+ L ++ S NE WEDR +
Sbjct: 185 TRNFENLQENEIATGGDAIKKRLASLDLQSVMDRAYLEWQALTKQGSIGNE--WEDRTIQ 242
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+ LVRRM+LAK F++TN++PEWMVL LLPVLPPELRPI+++ G+L++SD+NELYR+
Sbjct: 243 RRKDLLVRRMKLAKDFLQTNLKPEWMVLNLLPVLPPELRPIVELYEGELITSDLNELYRK 302
Query: 363 VIYRNNTLIDLLTTSRSTP 419
+I+RNNTLI+ L+ S TP
Sbjct: 303 IIHRNNTLIEFLSGSEFTP 321
[143][TOP]
>UniRef100_C4MXN2 RNA polymerase C1 (Fragment) n=1 Tax=Barnadesia lehmannii var.
villosa RepID=C4MXN2_9ASTR
Length = 146
Score = 158 bits (399), Expect = 2e-37
Identities = 79/92 (85%), Positives = 83/92 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI+ID SLVEWKELGEE T NE WEDRKVG
Sbjct: 57 TPGFDTFRNREISTGASAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNE--WEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLP 278
RRK+FLVRRMELAKHFIRTNIEP+WMVLCLLP
Sbjct: 115 RRKDFLVRRMELAKHFIRTNIEPKWMVLCLLP 146
[144][TOP]
>UniRef100_C4MXR6 RNA polymerase C1 (Fragment) n=2 Tax=Calyceraceae
RepID=C4MXR6_9ASTR
Length = 146
Score = 157 bits (398), Expect = 3e-37
Identities = 78/92 (84%), Positives = 83/92 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI+ID SLVEWKELGEE T NE WEDRKVG
Sbjct: 57 TQGFDTFRNREISTGASAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNE--WEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLP 278
RRK+FLVRRMEL+KHFIRTNIEP+WMVLCLLP
Sbjct: 115 RRKDFLVRRMELSKHFIRTNIEPKWMVLCLLP 146
[145][TOP]
>UniRef100_C4MXQ1 RNA polymerase C1 (Fragment) n=2 Tax=Dasyphyllum RepID=C4MXQ1_9ASTR
Length = 146
Score = 157 bits (398), Expect = 3e-37
Identities = 78/92 (84%), Positives = 83/92 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AI+EQL DLDLRI+ID SLVEWKELGEE T NE WEDRKVG
Sbjct: 57 TRGFDTFRNREISTGASAIKEQLADLDLRIIIDYSLVEWKELGEEGPTGNE--WEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLP 278
RRK+FLVRRMELAKHFIRTNIEP+WMVLCLLP
Sbjct: 115 RRKDFLVRRMELAKHFIRTNIEPKWMVLCLLP 146
[146][TOP]
>UniRef100_C4MXP9 RNA polymerase C1 (Fragment) n=1 Tax=Dasyphyllum popayanense
RepID=C4MXP9_9ASTR
Length = 146
Score = 157 bits (398), Expect = 3e-37
Identities = 78/92 (84%), Positives = 83/92 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AI+EQL DLDLRI+ID SLVEWKELGEE T NE WEDRKVG
Sbjct: 57 TRGFDTFRNREISTGASAIKEQLADLDLRIIIDYSLVEWKELGEEGPTGNE--WEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLP 278
RRK+FLVRRMELAKHFIRTNIEP+WMVLCLLP
Sbjct: 115 RRKDFLVRRMELAKHFIRTNIEPKWMVLCLLP 146
[147][TOP]
>UniRef100_Q8MA11 DNA-directed RNA polymerase subunit beta' n=1 Tax=Chaetosphaeridium
globosum RepID=RPOC1_CHAGL
Length = 661
Score = 157 bits (396), Expect = 5e-37
Identities = 77/142 (54%), Positives = 108/142 (76%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T F++F+NRE+++G AI ++L L+L+ +I S EW++L +RST N +ED+K+
Sbjct: 181 TRSFESFQNREMATGGDAIHKRLSSLNLQKLIFQSYNEWEKLSLQRSTGNS--YEDKKIQ 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
R K+ ++RR++LAK F NI+PEWMVL +LPVLPPELRP+I+I+ G+L++SD+NELYRR
Sbjct: 239 RMKDIIIRRIKLAKQFFENNIKPEWMVLSVLPVLPPELRPMIEINQGELITSDLNELYRR 298
Query: 363 VIYRNNTLIDLLTTSRSTPGEL 428
VIYRNNTLI L S STP L
Sbjct: 299 VIYRNNTLIGFLNKSNSTPAGL 320
[148][TOP]
>UniRef100_C4MXQ0 RNA polymerase C1 (Fragment) n=1 Tax=Dasyphyllum brevispinum
RepID=C4MXQ0_9ASTR
Length = 146
Score = 156 bits (395), Expect = 6e-37
Identities = 77/92 (83%), Positives = 83/92 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AI+EQL DLDLRI+ID SL+EWKELGEE T NE WEDRKVG
Sbjct: 57 TRGFDTFRNREISTGASAIKEQLADLDLRIIIDYSLLEWKELGEEGPTGNE--WEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLP 278
RRK+FLVRRMELAKHFIRTNIEP+WMVLCLLP
Sbjct: 115 RRKDFLVRRMELAKHFIRTNIEPKWMVLCLLP 146
[149][TOP]
>UniRef100_C4MXP8 RNA polymerase C1 (Fragment) n=1 Tax=Dasyphyllum diacanthoides
RepID=C4MXP8_9ASTR
Length = 146
Score = 156 bits (395), Expect = 6e-37
Identities = 78/92 (84%), Positives = 83/92 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI+ID SLVEWKELGEE T NE WED+KVG
Sbjct: 57 TGGFDTFRNREISTGASAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNE--WEDQKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLP 278
RRK+FLVRRMELAKHFIRTNIEP+WMVLCLLP
Sbjct: 115 RRKDFLVRRMELAKHFIRTNIEPKWMVLCLLP 146
[150][TOP]
>UniRef100_C4MXQ8 RNA polymerase C1 (Fragment) n=4 Tax=Nassauvieae RepID=C4MXQ8_9ASTR
Length = 146
Score = 154 bits (388), Expect = 4e-36
Identities = 76/92 (82%), Positives = 81/92 (88%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+G AIREQL DLDLRI+ID SLVEWKEL EE T NE WEDRKVG
Sbjct: 57 TRGFDTFRNREISTGGSAIREQLADLDLRIIIDYSLVEWKELEEEEPTGNE--WEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLP 278
RRK+FL+RRMELAKHFIRTNIEP+WMVLCLLP
Sbjct: 115 RRKDFLLRRMELAKHFIRTNIEPKWMVLCLLP 146
[151][TOP]
>UniRef100_C4MXN7 RNA polymerase C1 (Fragment) n=10 Tax=Barnadesioideae
RepID=C4MXN7_9ASTR
Length = 146
Score = 149 bits (377), Expect = 7e-35
Identities = 76/92 (82%), Positives = 81/92 (88%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI+ID SLVEWKEL EE T NEWED+KVG
Sbjct: 57 TRGFDTFRNREISTGASAIREQLADLDLRIIIDYSLVEWKELEEEGPT--GNEWEDQKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLP 278
RRK+FLVRRMELAKHFIRTNIEP+WMVL LLP
Sbjct: 115 RRKDFLVRRMELAKHFIRTNIEPKWMVLGLLP 146
[152][TOP]
>UniRef100_C4MXP5 RNA polymerase C1 (Fragment) n=1 Tax=Chuquiraga jussieui
RepID=C4MXP5_9ASTR
Length = 142
Score = 149 bits (376), Expect = 1e-34
Identities = 75/92 (81%), Positives = 81/92 (88%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI+ID SLVEWKEL EE T NEWED+KVG
Sbjct: 53 TRGFDTFRNREISTGASAIREQLADLDLRIIIDYSLVEWKELEEEGPT--GNEWEDQKVG 110
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLP 278
RRK+FLVRRMELAKHFIRTNIEP+WM+L LLP
Sbjct: 111 RRKDFLVRRMELAKHFIRTNIEPKWMILGLLP 142
[153][TOP]
>UniRef100_Q85FM8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Adiantum
capillus-veneris RepID=RPOC1_ADICA
Length = 694
Score = 146 bits (368), Expect = 8e-34
Identities = 69/139 (49%), Positives = 101/139 (72%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T ++ R EI +G AIRE L LDL+ ++ + +EW+ +++ E WEDR +
Sbjct: 181 TQNYEMLRKNEIVTGGDAIREGLASLDLQSFLNCAYLEWQASVKQKPVGIE--WEDRTIR 238
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+ L+RR++LAK F+RTN++PEWMVL +PVLPPELRPI+++ G+L++SD+NELYR+
Sbjct: 239 RRKDLLIRRIKLAKDFLRTNMKPEWMVLYFIPVLPPELRPIVELHEGELITSDLNELYRK 298
Query: 363 VIYRNNTLIDLLTTSRSTP 419
+IYRNNTL + L+ S TP
Sbjct: 299 IIYRNNTLREFLSGSEFTP 317
[154][TOP]
>UniRef100_C4MXR5 RNA polymerase C1 (Fragment) n=2 Tax=Acicarpha tribuloides
RepID=C4MXR5_9ASTR
Length = 138
Score = 145 bits (367), Expect = 1e-33
Identities = 73/87 (83%), Positives = 77/87 (88%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GA AIREQL DLDLRI+ID SLVEWKELGEE T NEWEDRKVG
Sbjct: 54 TQGFDRFRNREISTGASAIREQLADLDLRIIIDYSLVEWKELGEEGPT--GNEWEDRKVG 111
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMV 263
RRK+FLVRRMELAKHFIRTNIEP+WMV
Sbjct: 112 RRKDFLVRRMELAKHFIRTNIEPKWMV 138
[155][TOP]
>UniRef100_C4MXQ6 RNA polymerase C1 (Fragment) n=4 Tax=Barnadesioideae
RepID=C4MXQ6_9ASTR
Length = 140
Score = 145 bits (367), Expect = 1e-33
Identities = 73/86 (84%), Positives = 77/86 (89%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI+ID SLVEWKELGEE T NEWEDRKVG
Sbjct: 57 TPGFDTFRNREISTGASAIREQLADLDLRIIIDYSLVEWKELGEEGPT--GNEWEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWM 260
RRK+FLVRRMELAKHFIRTNIEP+WM
Sbjct: 115 RRKDFLVRRMELAKHFIRTNIEPKWM 140
[156][TOP]
>UniRef100_UPI0000191AF8 RNA polymerase beta'''' subunit n=1 Tax=Adiantum capillus-veneris
RepID=UPI0000191AF8
Length = 698
Score = 145 bits (366), Expect = 1e-33
Identities = 69/139 (49%), Positives = 101/139 (72%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T ++ R EI +G AIRE L LDL+ ++ + +EW+ +++ E WEDR +
Sbjct: 185 TQNYEMLRKNEIVTGGDAIREGLASLDLQSFLNCAYLEWQASVKQKPVGIE--WEDRTIR 242
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRR 362
RRK+ L+RR++LAK F+RTN++PEWMVL +PVLPPELRPI+++ G+L++SD+NELYR+
Sbjct: 243 RRKDLLIRRIKLAKDFLRTNMKPEWMVLYFIPVLPPELRPIVELYEGELITSDLNELYRK 302
Query: 363 VIYRNNTLIDLLTTSRSTP 419
+IYRNNTL + L+ S TP
Sbjct: 303 IIYRNNTLREFLSGSEFTP 321
[157][TOP]
>UniRef100_C4MXQ7 RNA polymerase C1 (Fragment) n=1 Tax=Schlechtendalia luzulifolia
RepID=C4MXQ7_9ASTR
Length = 142
Score = 144 bits (362), Expect = 4e-33
Identities = 74/89 (83%), Positives = 79/89 (88%)
Frame = +3
Query: 12 FDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRK 191
FDTFRNREIS+GA AIREQL DLDLRI+IDSSLVEWKEL E ST NE EDRKV +RK
Sbjct: 56 FDTFRNREISTGASAIREQLDDLDLRIIIDSSLVEWKELVEGESTGNER--EDRKVEKRK 113
Query: 192 NFLVRRMELAKHFIRTNIEPEWMVLCLLP 278
+FLVRRMELAKHFIRTNIEP+WMVLCLLP
Sbjct: 114 DFLVRRMELAKHFIRTNIEPKWMVLCLLP 142
[158][TOP]
>UniRef100_C4MXR3 RNA polymerase C1 (Fragment) n=1 Tax=Calycera cf. spinulosa TS
12888 RepID=C4MXR3_9ASTR
Length = 139
Score = 143 bits (361), Expect = 5e-33
Identities = 71/85 (83%), Positives = 76/85 (89%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI+ID SLVEWKELGEE T NEWEDRKVG
Sbjct: 57 TQGFDTFRNREISTGASAIREQLADLDLRIIIDYSLVEWKELGEEGPT--GNEWEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEW 257
RRK+FLVRRMEL+KHFIRTNIEP+W
Sbjct: 115 RRKDFLVRRMELSKHFIRTNIEPKW 139
[159][TOP]
>UniRef100_C4MXQ9 RNA polymerase C1 (Fragment) n=1 Tax=Mutisia decurrens
RepID=C4MXQ9_9ASTR
Length = 141
Score = 143 bits (360), Expect = 7e-33
Identities = 71/87 (81%), Positives = 76/87 (87%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+G AIREQL DLDLRI+ID SLVEWKEL EE T NEWEDRKVG
Sbjct: 57 TRGFDTFRNREISTGGSAIREQLADLDLRIIIDYSLVEWKELEEEEPT--GNEWEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWMV 263
RRK+FL+RRMELAKHFIRTNIEP+WMV
Sbjct: 115 RRKDFLLRRMELAKHFIRTNIEPKWMV 141
[160][TOP]
>UniRef100_Q3BAQ0 Putative uncharacterized protein n=1 Tax=Phalaenopsis aphrodite
subsp. formosana RepID=Q3BAQ0_PHAAO
Length = 98
Score = 142 bits (358), Expect = 1e-32
Identities = 75/100 (75%), Positives = 79/100 (79%)
Frame = -3
Query: 307 IIGLNSGGRTGKRHKTIHSGSIFVRIKCLANSMRRTKKFFLLPTFRSSHSFSLCVDLSSP 128
+IGLNSGGRTG RHKTIHSGS FVR KCLANSMR TKK FLL F SSHSF D SSP
Sbjct: 1 MIGLNSGGRTGNRHKTIHSGSTFVRRKCLANSMRLTKKSFLLRIFFSSHSFP--ADSSSP 58
Query: 127 NSFHSTNEESITILKSRSTNCSRIAPAPLDISRFRNVSKP 8
NSFHS E S+ I KS S NCS IAPAP++ISRFRNVSKP
Sbjct: 59 NSFHSNKELSVIIRKSESANCSLIAPAPVEISRFRNVSKP 98
[161][TOP]
>UniRef100_B1VKH4 DNA-directed RNA polymerase subunit beta' n=2 Tax=Cryptomeria
japonica RepID=RPOC1_CRYJA
Length = 698
Score = 142 bits (358), Expect = 1e-32
Identities = 72/147 (48%), Positives = 102/147 (69%), Gaps = 15/147 (10%)
Frame = +3
Query: 12 FDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERS---THNENEWEDRKV- 179
F + REI++G AIREQL LDL+++ID S +EWKE+ E S + EN + +RK+
Sbjct: 186 FGLVQEREIATGGKAIREQLAGLDLQMIIDRSYIEWKEIDEVISILFSEPENLFSNRKIY 245
Query: 180 -----------GRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGK 326
RRK+ LVRRM AK+F+RTN+EP+WMVLCLLPVLPP+LRP+ Q++ G
Sbjct: 246 AQFKEQKLQKLRRRKDLLVRRMRFAKYFLRTNVEPQWMVLCLLPVLPPDLRPMFQLNEGG 305
Query: 327 LMSSDINELYRRVIYRNNTLIDLLTTS 407
+++SD+NELY+ VI RNN ++ + T+
Sbjct: 306 VITSDLNELYQTVIRRNNNVLQFIETT 332
[162][TOP]
>UniRef100_C4MXP1 RNA polymerase C1 (Fragment) n=3 Tax=Barnadesioideae
RepID=C4MXP1_9ASTR
Length = 136
Score = 142 bits (357), Expect = 2e-32
Identities = 71/86 (82%), Positives = 76/86 (88%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AIREQL DLDLRI+ID SLVEWKEL EE T NEWED+KVG
Sbjct: 53 TRGFDTFRNREISTGASAIREQLADLDLRIIIDYSLVEWKELEEEGPT--GNEWEDQKVG 110
Query: 183 RRKNFLVRRMELAKHFIRTNIEPEWM 260
RRK+FLVRRMELAKHFIRTNIEP+WM
Sbjct: 111 RRKDFLVRRMELAKHFIRTNIEPKWM 136
[163][TOP]
>UniRef100_Q06FX0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Pelargonium x
hortorum RepID=RPOC1_PELHO
Length = 701
Score = 141 bits (356), Expect = 2e-32
Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 10/152 (6%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERS------THNEN-E 161
T F R+RE S+GAGAIR++L +LDL ++I SSL EWK+ E+++ T E E
Sbjct: 191 TKSFQKLRDREFSAGAGAIRKRLANLDLEVIIYSSLAEWKKRKEQKAEIEIKPTRTERTE 250
Query: 162 WEDRKVG---RRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLM 332
EDRK+ RR LVRRMELAKHF+ TN++PEWM+L LLPVLPPELRPI +I + +
Sbjct: 251 EEDRKIEKIKRRMRVLVRRMELAKHFLETNVKPEWMILRLLPVLPPELRPIFKISEVQFI 310
Query: 333 SSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 428
SSD+N LY+ VI N L D L + P +L
Sbjct: 311 SSDLNTLYKEVISNNKILSDSLLGCKFVPEQL 342
[164][TOP]
>UniRef100_Q9TM49 RNA polymerase (Fragment) n=1 Tax=Allium cepa RepID=Q9TM49_ALLCE
Length = 144
Score = 140 bits (354), Expect = 3e-32
Identities = 68/84 (80%), Positives = 77/84 (91%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GF+TFRNREIS+GAGAIREQL DLDLRI+I++SLVEWKELG+E S ENEWEDRK+
Sbjct: 63 TQGFETFRNREISTGAGAIREQLADLDLRIIIENSLVEWKELGDEESA--ENEWEDRKIR 120
Query: 183 RRKNFLVRRMELAKHFIRTNIEPE 254
RRK+FLVRRMELAKHFIRTN+EPE
Sbjct: 121 RRKDFLVRRMELAKHFIRTNVEPE 144
[165][TOP]
>UniRef100_B7T2U0 DNA-directed RNA polymerase n=1 Tax=Erodium chrysanthum
RepID=B7T2U0_9ROSI
Length = 707
Score = 138 bits (348), Expect = 2e-31
Identities = 80/151 (52%), Positives = 97/151 (64%), Gaps = 19/151 (12%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWED------ 170
G+ T RNRE+S+GA AIREQL DLDLR++I+SSL EWKEL E E EW++
Sbjct: 189 GWHTLRNRELSTGASAIREQLGDLDLRVIIESSLAEWKEL-EAEWKELEAEWKELEEEGL 247
Query: 171 ----------RKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDG 320
+K+ RRK FLVRRM LAKHFIRT++EPEWMVL LLPVLPP LRP
Sbjct: 248 PGDPWQERTIQKIERRKRFLVRRMGLAKHFIRTSVEPEWMVLSLLPVLPPGLRPAAVHRE 307
Query: 321 GKLMS---SDINELYRRVIYRNNTLIDLLTT 404
+S SDIN LY RV+ RN ++ + T
Sbjct: 308 ELALSRRGSDINTLYGRVLSRNKEVLKFIRT 338
[166][TOP]
>UniRef100_O19962 RNA polymerase C1 (Fragment) n=6 Tax=Gossypium RepID=O19962_GOSAR
Length = 117
Score = 137 bits (346), Expect = 3e-31
Identities = 69/83 (83%), Positives = 75/83 (90%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFR+REIS+GAGAIREQL DLDLRI+ID S+VEWKELGEE T NEWEDRK+G
Sbjct: 37 TQGFDTFRSREISTGAGAIREQLADLDLRILIDYSVVEWKELGEEGLT--GNEWEDRKIG 94
Query: 183 RRKNFLVRRMELAKHFIRTNIEP 251
RRK+FLVRRMELAKHFIRTNIEP
Sbjct: 95 RRKDFLVRRMELAKHFIRTNIEP 117
[167][TOP]
>UniRef100_A4QM10 DNA-directed RNA polymerase n=1 Tax=Pinus koraiensis
RepID=A4QM10_PINKO
Length = 480
Score = 136 bits (343), Expect = 6e-31
Identities = 70/116 (60%), Positives = 86/116 (74%), Gaps = 8/116 (6%)
Frame = +3
Query: 90 IVIDSSLVEWKELGE-------ERSTHNENEWEDRKVGRRKNFLVRRMELAKHFIRTNIE 248
++ID S +EWK L E E + WED K+ RRK+FLV R++LAKHF+RTNIE
Sbjct: 1 MIIDRSHMEWKNLVELKWNRLEENQESTVDRWEDEKIRRRKDFLVGRIKLAKHFLRTNIE 60
Query: 249 PEWMVLCLLPVLPPELRPIIQI-DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRS 413
P+WMVLCLLPVLPPE RPI+Q+ +GG + SSD+NELYRRVI RNNTL +LL S S
Sbjct: 61 PKWMVLCLLPVLPPEPRPIVQLGEGGLITSSDLNELYRRVINRNNTLTNLLARSGS 116
[168][TOP]
>UniRef100_Q9TJZ2 RNA polymerase (Fragment) n=1 Tax=Arabidopsis thaliana
RepID=Q9TJZ2_ARATH
Length = 144
Score = 135 bits (339), Expect = 2e-30
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFD FRNREIS+GAGAIREQL DLDLRI+I++SLVEWK+LGEE T NEWEDRK+
Sbjct: 63 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPT--GNEWEDRKIV 120
Query: 183 RRKNFLVRRMELAKHFIRTNIEPE 254
RRK+FLVRRMELAKHFIRTNIEP+
Sbjct: 121 RRKDFLVRRMELAKHFIRTNIEPK 144
[169][TOP]
>UniRef100_C4MXQ2 RNA polymerase C1 (Fragment) n=1 Tax=Dasyphyllum tomentosum
RepID=C4MXQ2_9ASTR
Length = 135
Score = 134 bits (337), Expect = 3e-30
Identities = 68/81 (83%), Positives = 72/81 (88%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T GFDTFRNREIS+GA AI+EQL DLDLRI+ID SLVEWKELGEE T NEWEDRKVG
Sbjct: 57 TRGFDTFRNREISTGASAIKEQLADLDLRIIIDYSLVEWKELGEEGPT--GNEWEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNI 245
RRK+FLVRRMELAKHFIRTNI
Sbjct: 115 RRKDFLVRRMELAKHFIRTNI 135
[170][TOP]
>UniRef100_Q5SCX9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Huperzia lucidula
RepID=RPOC1_HUPLU
Length = 676
Score = 130 bits (328), Expect = 4e-29
Identities = 68/136 (50%), Positives = 94/136 (69%)
Frame = +3
Query: 12 FDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRK 191
F+ F RE+++G AI++ L +L L+ + D EWK ++ T + ED + RRK
Sbjct: 192 FNEFMGREMATGGDAIQKLLANLKLKDIKDGIHREWKFFVNKKPTGDI--LEDLLIKRRK 249
Query: 192 NFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIY 371
+FLVRR +L K FI+T PEWMVL +LPVLPPELRP+I+++ G+++SSDINELYRR+I+
Sbjct: 250 DFLVRRFKLIKFFIQTKTNPEWMVLSILPVLPPELRPMIRLNDGEIISSDINELYRRIIF 309
Query: 372 RNNTLIDLLTTSRSTP 419
RNN LID L TP
Sbjct: 310 RNNGLIDFLEKRTFTP 325
[171][TOP]
>UniRef100_C4MXN0 RNA polymerase C1 (Fragment) n=1 Tax=Picris pauciflora
RepID=C4MXN0_9ASTR
Length = 135
Score = 125 bits (313), Expect = 2e-27
Identities = 62/81 (76%), Positives = 70/81 (86%)
Frame = +3
Query: 3 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVG 182
T FDTFRNRE+S+G G+IR+QL +LDLRI+ID SLVEWKEL EE T NEWEDRKVG
Sbjct: 57 TRSFDTFRNREMSTGGGSIRQQLANLDLRIIIDYSLVEWKELEEEEPT--GNEWEDRKVG 114
Query: 183 RRKNFLVRRMELAKHFIRTNI 245
RRK+FL+RRMELAKHFIRTNI
Sbjct: 115 RRKDFLLRRMELAKHFIRTNI 135
[172][TOP]
>UniRef100_B2Y1V6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Welwitschia
mirabilis RepID=RPOC1_WELMI
Length = 696
Score = 120 bits (301), Expect = 5e-26
Identities = 59/125 (47%), Positives = 84/125 (67%)
Frame = +3
Query: 12 FDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRK 191
F F+ RE+++G AI+++L LDLRI++ S +EWK+L E K+ +RK
Sbjct: 195 FVEFQERELATGGNAIQKRLTGLDLRILLTHSYMEWKKLLRNYKIQRTQR-EKNKIQKRK 253
Query: 192 NFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIY 371
NFLVRR++ K+ I+ I+PEWMVLCLLPVLPPELRPI + + SD+N+LY++V+
Sbjct: 254 NFLVRRIKFVKYLIQAKIKPEWMVLCLLPVLPPELRPIFVLGEQIIAESDLNKLYQKVLI 313
Query: 372 RNNTL 386
RN L
Sbjct: 314 RNKNL 318
[173][TOP]
>UniRef100_B7ZIF2 DNA-directed RNA polymerase n=1 Tax=Ephedra equisetina
RepID=B7ZIF2_EPHEU
Length = 695
Score = 119 bits (299), Expect = 8e-26
Identities = 59/125 (47%), Positives = 84/125 (67%)
Frame = +3
Query: 12 FDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRK 191
F F+ REI+ G AI++QL LDLRI++D S +EWK+L + K+ +R
Sbjct: 198 FVEFQEREIAIGGNAIQKQLTGLDLRILLDQSYIEWKKLLKNYKIQRGKN----KIQQRN 253
Query: 192 NFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIY 371
+FL RR++ AK+ I+ I+PEWMVLCLLPVLPPELRPI + ++ SD+N+LY++V+
Sbjct: 254 HFLSRRIKFAKYLIQAKIQPEWMVLCLLPVLPPELRPIFALGQQMVVESDLNKLYQKVLI 313
Query: 372 RNNTL 386
RN L
Sbjct: 314 RNKNL 318
[174][TOP]
>UniRef100_A6BM51 DNA-directed RNA polymerase subunit beta' n=1 Tax=Gnetum
parvifolium RepID=RPOC1_GNEPA
Length = 747
Score = 113 bits (282), Expect = 8e-24
Identities = 55/125 (44%), Positives = 84/125 (67%)
Frame = +3
Query: 12 FDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRK 191
F F+ RE+++G +I++QL+ L+LR +++ S +EW++L + K+ +RK
Sbjct: 195 FVEFQERELATGGTSIQKQLIGLNLRALLNHSYMEWRKLLKNHRIQKRKN----KIEKRK 250
Query: 192 NFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIY 371
NFLV+R++ AK+ I+ I PEWMVLCLLPVLPPELRPI + ++ SD N+LY++V
Sbjct: 251 NFLVKRIKFAKNLIQAKINPEWMVLCLLPVLPPELRPIFVLGEQVVVESDFNKLYQKVNL 310
Query: 372 RNNTL 386
RN L
Sbjct: 311 RNKNL 315
[175][TOP]
>UniRef100_Q1ACN5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Chara vulgaris
RepID=RPOC1_CHAVU
Length = 666
Score = 113 bits (282), Expect = 8e-24
Identities = 59/129 (45%), Positives = 86/129 (66%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
GF+ +REI++G AI+ L +LDL+ ID S +EL +E E +K R
Sbjct: 184 GFEALEDREIATGGDAIKRLLSELDLQNTIDESRKACEELAYFDPL---DEKEAQKAQRE 240
Query: 189 KNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI 368
K LVRR+++A +F T I+P+WMVL +PVLPP+LRP+I ++ G L +SD+N+LYR+V+
Sbjct: 241 KERLVRRIKIASYFQETKIKPQWMVLSTIPVLPPDLRPMIHLNDGPLATSDLNDLYRKVL 300
Query: 369 YRNNTLIDL 395
YRN TL +L
Sbjct: 301 YRNKTLWEL 309
[176][TOP]
>UniRef100_Q19V99 DNA-directed RNA polymerase subunit beta' n=1 Tax=Chlorokybus
atmophyticus RepID=RPOC1_CHLAT
Length = 717
Score = 108 bits (269), Expect = 2e-22
Identities = 54/130 (41%), Positives = 84/130 (64%)
Frame = +3
Query: 12 FDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRK 191
F E+ SGA AI+ L LDL+ + E +T + +E E+ ++ +++
Sbjct: 181 FSLDEESELFSGAQAIQTMLSSLDLKTTAQNIREELA------ATEDWSEEEEDRLRKKR 234
Query: 192 NFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIY 371
N L++R+++ HF+ T +PEWM+L +LPVLPP+LRP++Q+DGG+ +SD+N+LYRRVI
Sbjct: 235 NKLIKRLKIINHFLATGAKPEWMILSILPVLPPDLRPMVQLDGGQFATSDLNDLYRRVIN 294
Query: 372 RNNTLIDLLT 401
RNN L L T
Sbjct: 295 RNNRLSKLNT 304
[177][TOP]
>UniRef100_Q9TJT7 RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q9TJT7_GINBI
Length = 144
Score = 103 bits (258), Expect = 5e-21
Identities = 52/82 (63%), Positives = 65/82 (79%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
GF F+NREI++G AIREQL DLRI++ +S +EWK L E++ST NE WED K+ RR
Sbjct: 65 GFGAFQNREIATGGDAIREQLAGPDLRILMANSYMEWKILEEQKSTGNE--WEDEKIQRR 122
Query: 189 KNFLVRRMELAKHFIRTNIEPE 254
K+F VRRMELAKHFI+TNIEP+
Sbjct: 123 KDFSVRRMELAKHFIQTNIEPK 144
[178][TOP]
>UniRef100_Q9MUS6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Mesostigma viride
RepID=RPOC1_MESVI
Length = 668
Score = 102 bits (255), Expect = 1e-20
Identities = 57/139 (41%), Positives = 81/139 (58%), Gaps = 21/139 (15%)
Frame = +3
Query: 42 SGAGAIREQLVDLDLRIV---IDSSLVEWKELGEERSTHN---------ENEW------- 164
SG AI + L + DL+ I L E + + S N EN+W
Sbjct: 189 SGGEAIYKMLKNFDLKATAQKIREDLAENEAAWTQSSFFNGEDSDWVLDENQWNKKNQDW 248
Query: 165 --EDRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSS 338
E+ + +++N L++R+ + HFI T +PEWMVL +LPVLPPELRP++Q+DGG+ +S
Sbjct: 249 QIEEERRNKKRNKLIKRLRIINHFIATGAKPEWMVLSILPVLPPELRPMVQLDGGRFATS 308
Query: 339 DINELYRRVIYRNNTLIDL 395
D+N+LYRRVI RNN L L
Sbjct: 309 DLNDLYRRVINRNNRLAKL 327
[179][TOP]
>UniRef100_Q9TJN7 RNA polymerase (Fragment) n=1 Tax=Zamia integrifolia
RepID=Q9TJN7_ZAMFL
Length = 144
Score = 97.8 bits (242), Expect = 3e-19
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = +3
Query: 9 GFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRR 188
GF+ FR REI++G AIREQL LDL+ +++ S +EWK LG+ +ST N W DRK+ RR
Sbjct: 65 GFEAFRRREIATGGDAIREQLTGLDLQTLMNRSYMEWKRLGKHKST--GNGWGDRKIKRR 122
Query: 189 KNFLVRRMELAKHFIRTNIEPE 254
K+F VRRM LAKHF++T+IEP+
Sbjct: 123 KDFSVRRMRLAKHFLQTDIEPK 144
[180][TOP]
>UniRef100_Q04E86 DNA-directed RNA polymerase subunit beta' n=1 Tax=Oenococcus oeni
PSU-1 RepID=RPOC_OENOB
Length = 1233
Score = 97.1 bits (240), Expect = 6e-19
Identities = 52/131 (39%), Positives = 85/131 (64%)
Frame = +3
Query: 6 HGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGR 185
+G DTF + GA AI+E L ++DL E+++ +NE +D G+
Sbjct: 163 YGTDTF---DAKMGAEAIKELLAEVDL---------------EKQAKELKNELKDA-TGQ 203
Query: 186 RKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 365
++ VRR+++ + FI++ +PEWMV+ ++PV+PP+LRP++Q++GG+ +SD+N+LYRRV
Sbjct: 204 KRTRAVRRLDIVEAFIQSGNKPEWMVMDVVPVIPPDLRPMVQLEGGRFATSDLNDLYRRV 263
Query: 366 IYRNNTLIDLL 398
I RNN L LL
Sbjct: 264 INRNNRLKRLL 274
[181][TOP]
>UniRef100_P95405 DNA-directed RNA polymerase subunit beta' (Fragment) n=1
Tax=Oenococcus oeni RepID=RPOC_OENOE
Length = 1004
Score = 96.7 bits (239), Expect = 7e-19
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = +3
Query: 6 HGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGR 185
+G DTF + GA AI+E L ++DL E+ + +NE +D G+
Sbjct: 96 YGTDTF---DAKMGAEAIKELLAEVDL---------------EKHAKELKNELKDA-TGQ 136
Query: 186 RKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 365
++ VRR+++ + FI++ +PEWMV+ ++PV+PP+LRP++Q++GG+ +SD+N+LYRRV
Sbjct: 137 KRTRAVRRLDIVEAFIQSGNKPEWMVMDVVPVIPPDLRPMVQLEGGRFATSDLNDLYRRV 196
Query: 366 IYRNNTLIDLL 398
I RNN L LL
Sbjct: 197 INRNNRLKRLL 207
[182][TOP]
>UniRef100_C6YUD0 DNA-directed RNA polymerase n=1 Tax=Francisella philomiragia subsp.
philomiragia ATCC 25015 RepID=C6YUD0_9GAMM
Length = 1416
Score = 95.9 bits (237), Expect = 1e-18
Identities = 52/122 (42%), Positives = 74/122 (60%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E S GA AIR+ L D DL I+S + E+E+ K +K ++R+
Sbjct: 175 EASMGAEAIRDLLADTDLETEIESL---------------QAEYEESKSTAKKEKAIKRL 219
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
L + F + +PEWMV+ +LPVLPP+LRP++ I+GG+ +SD+N+LYRRVI RNN L
Sbjct: 220 RLLETFQASGNKPEWMVMTVLPVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKK 279
Query: 393 LL 398
LL
Sbjct: 280 LL 281
[183][TOP]
>UniRef100_Q2WGI4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Selaginella uncinata
RepID=Q2WGI4_SELUN
Length = 697
Score = 95.9 bits (237), Expect = 1e-18
Identities = 54/126 (42%), Positives = 73/126 (57%)
Frame = +3
Query: 15 DTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKN 194
D RE ++G AIRE D +++ D + EW + T +E EDR R K+
Sbjct: 188 DESAEREAATGGDAIREPPASPDPKVLSDRAYAEWGSWVSDGPTGDE--LEDRTTRRGKD 245
Query: 195 FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYR 374
VR + L K+ IRT PEWMV L PV PPE RP++Q+ G+++S DINE +RR+I R
Sbjct: 246 LPVRHIGLMKNLIRTGTNPEWMVPLLSPVPPPEPRPMVQLGEGRVVSPDINEPHRRIILR 305
Query: 375 NNTLID 392
NN L D
Sbjct: 306 NNPLGD 311
[184][TOP]
>UniRef100_B0TX11 DNA-directed RNA polymerase subunit beta' n=1 Tax=Francisella
philomiragia subsp. philomiragia ATCC 25017
RepID=RPOC_FRAP2
Length = 1416
Score = 95.9 bits (237), Expect = 1e-18
Identities = 52/122 (42%), Positives = 74/122 (60%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E S GA AIR+ L D DL I+S + E+E+ K +K ++R+
Sbjct: 175 EASMGAEAIRDLLADTDLETEIESL---------------QAEYEESKSTAKKEKAIKRL 219
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
L + F + +PEWMV+ +LPVLPP+LRP++ I+GG+ +SD+N+LYRRVI RNN L
Sbjct: 220 RLLETFQASGNKPEWMVMTVLPVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKK 279
Query: 393 LL 398
LL
Sbjct: 280 LL 281
[185][TOP]
>UniRef100_P42080 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cyanophora
paradoxa RepID=RPOC1_CYAPA
Length = 636
Score = 95.9 bits (237), Expect = 1e-18
Identities = 49/121 (40%), Positives = 79/121 (65%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E+ GA AI+ L DLDL+ E K + E ++++ + +K + L++++
Sbjct: 184 ELGIGAEAIQRLLSDLDLQ-------AEAKTIREILISNSDKKKNTQKRAK----LIKKL 232
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
+ +FI T +PEWM+L L+PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L+
Sbjct: 233 RIINNFIATKAKPEWMILSLIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLLR 292
Query: 393 L 395
L
Sbjct: 293 L 293
[186][TOP]
>UniRef100_C6D4P9 DNA-directed RNA polymerase n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6D4P9_PAESJ
Length = 1208
Score = 95.5 bits (236), Expect = 2e-18
Identities = 52/122 (42%), Positives = 77/122 (63%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
+ S GA A+++ L D+D+ E + L EE T G+R+N ++R+
Sbjct: 167 QASMGAEAVKKLLQDIDVE-------KELETLKEELRTAQ---------GQRRNRAIKRL 210
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
E+ + F + EPEWM+L +LPV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L
Sbjct: 211 EVIEAFRNSGNEPEWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR 270
Query: 393 LL 398
LL
Sbjct: 271 LL 272
[187][TOP]
>UniRef100_Q0VUQ3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prochlorococcus
marinus str. GP2 RepID=Q0VUQ3_PROMA
Length = 438
Score = 95.5 bits (236), Expect = 2e-18
Identities = 51/120 (42%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL V + EL EE + G+++ L++R+
Sbjct: 70 VGIGAEALKQLLEDLDLNEVAE-------ELREEITNSK---------GQKRAKLIKRIR 113
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN +PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 114 VIDNFIATNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 173
[188][TOP]
>UniRef100_A8G6Y5 DNA-directed RNA polymerase subunit gamma n=2 Tax=Prochlorococcus
marinus RepID=RPOC1_PROM2
Length = 634
Score = 95.5 bits (236), Expect = 2e-18
Identities = 51/120 (42%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL V + EL EE + G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLDLNQVAE-------ELREEITNSK---------GQKRAKLIKRIR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN +PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[189][TOP]
>UniRef100_A3PEX3 DNA-directed RNA polymerase subunit gamma n=1 Tax=Prochlorococcus
marinus str. MIT 9301 RepID=RPOC1_PROM0
Length = 634
Score = 95.5 bits (236), Expect = 2e-18
Identities = 51/120 (42%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL V + EL EE + G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLDLNQVAE-------ELREEITNSK---------GQKRAKLIKRIR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN +PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[190][TOP]
>UniRef100_UPI0001966A83 hypothetical protein SUBVAR_00651 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A83
Length = 1200
Score = 95.1 bits (235), Expect = 2e-18
Identities = 54/128 (42%), Positives = 79/128 (61%)
Frame = +3
Query: 15 DTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKN 194
DTF E GA AI++ L ++DL + EL EE N G+++
Sbjct: 163 DTF---EAGMGAEAIQKLLAEIDLEKLS-------AELREELEKSN---------GQKRV 203
Query: 195 FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYR 374
L++R+E + FI +N PEWM+L ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI R
Sbjct: 204 RLLKRLEAVEAFIESNQRPEWMILTVIPVIPPDLRPLLQLDGGRFATSDLNDLYRRVINR 263
Query: 375 NNTLIDLL 398
NN L LL
Sbjct: 264 NNRLKRLL 271
[191][TOP]
>UniRef100_C5NY38 DNA-directed RNA polymerase n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NY38_9BACL
Length = 1226
Score = 95.1 bits (235), Expect = 2e-18
Identities = 49/118 (41%), Positives = 76/118 (64%)
Frame = +3
Query: 45 GAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMELAK 224
GA AIR+ L +LD+ + E KEL E + K G++ +++R+E+ +
Sbjct: 172 GAEAIRDLLAELDIEKELKDLKNELKELSES----------NYKSGQKVVKIIKRVEVFE 221
Query: 225 HFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
F + +PEWM++ +LPV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L L+
Sbjct: 222 AFKHSGNKPEWMIMTVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKKLI 279
[192][TOP]
>UniRef100_Q5WLR9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Bacillus clausii
KSM-K16 RepID=RPOC_BACSK
Length = 1206
Score = 95.1 bits (235), Expect = 2e-18
Identities = 53/120 (44%), Positives = 76/120 (63%)
Frame = +3
Query: 39 SSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMEL 218
S GA AIR+ L D+DL+ +++ L EE T G+R+ ++R+E+
Sbjct: 169 SMGAEAIRKLLADIDLQKEVNA-------LKEELETAQ---------GQRRTRAIKRLEV 212
Query: 219 AKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
+ F + EP WMVL +LPV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L LL
Sbjct: 213 LEAFRNSGNEPSWMVLDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLL 272
[193][TOP]
>UniRef100_B2UQY1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Akkermansia
muciniphila ATCC BAA-835 RepID=RPOC_AKKM8
Length = 1398
Score = 95.1 bits (235), Expect = 2e-18
Identities = 50/132 (37%), Positives = 82/132 (62%)
Frame = +3
Query: 6 HGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGR 185
+G+D+F E GA AI++ L +DL ++ +L E+ N +
Sbjct: 175 YGYDSF---EAGMGAEAIQKMLAAIDLPTLV-------ADLQEQLDNTNSKQ-------- 216
Query: 186 RKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 365
K + +R++LA+ F+++N PEWM+L +LPV+PP+LRP++ ++GG+ +SD+N+LYRRV
Sbjct: 217 NKRKIAKRLKLAQGFLQSNTRPEWMILNVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRV 276
Query: 366 IYRNNTLIDLLT 401
I RNN L LL+
Sbjct: 277 INRNNRLKTLLS 288
[194][TOP]
>UniRef100_A2BT60 DNA-directed RNA polymerase subunit gamma n=1 Tax=Prochlorococcus
marinus str. AS9601 RepID=RPOC1_PROMS
Length = 634
Score = 95.1 bits (235), Expect = 2e-18
Identities = 50/120 (41%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL + + EL EE + G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLDLHQIAE-------ELREEITNSK---------GQKRAKLIKRIR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN +PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[195][TOP]
>UniRef100_Q7V5P2 DNA-directed RNA polymerase subunit gamma n=1 Tax=Prochlorococcus
marinus str. MIT 9313 RepID=RPOC1_PROMM
Length = 634
Score = 95.1 bits (235), Expect = 2e-18
Identities = 51/120 (42%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL V + +L EE S+ G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLDLPDVAE-------QLREEISSSK---------GQKRAKLIKRLR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNARPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[196][TOP]
>UniRef100_Q318Q8 DNA-directed RNA polymerase subunit gamma n=1 Tax=Prochlorococcus
marinus str. MIT 9312 RepID=RPOC1_PROM9
Length = 634
Score = 95.1 bits (235), Expect = 2e-18
Identities = 50/120 (41%), Positives = 77/120 (64%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL + + EL EE + + G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLDLNQIAE-------ELREEIT---------QSKGQKRAKLIKRIR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN +PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[197][TOP]
>UniRef100_A2BYL0 DNA-directed RNA polymerase subunit gamma n=1 Tax=Prochlorococcus
marinus str. MIT 9515 RepID=RPOC1_PROM5
Length = 634
Score = 95.1 bits (235), Expect = 2e-18
Identities = 50/120 (41%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL + + EL EE + G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLDLNQIAE-------ELREEITNSK---------GQKRAKLIKRIR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN +PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[198][TOP]
>UniRef100_C9R8J7 DNA-directed RNA polymerase, beta' subunit n=1 Tax=Ammonifex
degensii KC4 RepID=C9R8J7_9THEO
Length = 1174
Score = 94.7 bits (234), Expect = 3e-18
Identities = 53/128 (41%), Positives = 77/128 (60%)
Frame = +3
Query: 15 DTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKN 194
D+FR + GA AI+E L ++DL + E KE G+R+
Sbjct: 164 DSFR---VGMGAEAIKELLAEIDLDQLAQELRQEIKE----------------STGQRRV 204
Query: 195 FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYR 374
+RR+E+ + F ++ PEWM+L +LPV+PPELRP++Q+DGG+ +SD+N+LYRRVI R
Sbjct: 205 RAIRRLEVVEAFRKSGNRPEWMILEVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINR 264
Query: 375 NNTLIDLL 398
NN L LL
Sbjct: 265 NNRLKRLL 272
[199][TOP]
>UniRef100_Q0VUQ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prochlorococcus
marinus str. SB RepID=Q0VUQ2_PROMA
Length = 550
Score = 94.4 bits (233), Expect = 4e-18
Identities = 50/120 (41%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL V + EL EE + G+++ L++R+
Sbjct: 118 VGIGAEALKQLLEDLDLNQVAE-------ELREEITNSK---------GQKRAKLIKRIR 161
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN +PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYR+VI RNN L L
Sbjct: 162 VIDNFIATNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRKVINRNNRLARL 221
[200][TOP]
>UniRef100_Q0VUQ1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prochlorococcus
marinus str. TAK9803 RepID=Q0VUQ1_PROMA
Length = 550
Score = 94.4 bits (233), Expect = 4e-18
Identities = 50/120 (41%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL V + EL EE + G+++ L++R+
Sbjct: 118 VGIGAEALKQLLEDLDLNQVAE-------ELREEITNSK---------GQKRAELIKRIR 161
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN +PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYR+VI RNN L L
Sbjct: 162 VIDNFIATNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRKVINRNNRLARL 221
[201][TOP]
>UniRef100_Q0VUP7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prochlorococcus
marinus str. EQPAC1 RepID=Q0VUP7_PROMA
Length = 502
Score = 94.4 bits (233), Expect = 4e-18
Identities = 49/120 (40%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL + + EL EE + G+++ L++R+
Sbjct: 70 VGIGAEALKQLLEDLDLNQIAE-------ELREEITNSK---------GQKRAKLIKRIR 113
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +F+ TN +PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 114 VIDNFLATNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 173
[202][TOP]
>UniRef100_B1QYI3 DNA-directed RNA polymerase n=2 Tax=Clostridium butyricum
RepID=B1QYI3_CLOBU
Length = 1178
Score = 94.4 bits (233), Expect = 4e-18
Identities = 54/131 (41%), Positives = 81/131 (61%)
Frame = +3
Query: 6 HGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGR 185
+G D+F S GA AI+E L ++DL KEL EE + G+
Sbjct: 162 YGEDSF---VASMGAEAIQELLAEIDLESGS-------KELKEELK---------QSTGQ 202
Query: 186 RKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 365
+K ++RR+E+ + F ++ PEWMV+ ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRV
Sbjct: 203 KKVRIIRRLEVVESFRKSGNNPEWMVINVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRV 262
Query: 366 IYRNNTLIDLL 398
I RNN L LL
Sbjct: 263 INRNNRLKKLL 273
[203][TOP]
>UniRef100_A0NHJ4 DNA-directed RNA polymerase n=1 Tax=Oenococcus oeni ATCC BAA-1163
RepID=A0NHJ4_OENOE
Length = 1233
Score = 94.4 bits (233), Expect = 4e-18
Identities = 50/131 (38%), Positives = 85/131 (64%)
Frame = +3
Query: 6 HGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGR 185
+G DTF + GA AI+E L +++L E+++ +NE +D G+
Sbjct: 163 YGTDTF---DAKMGAEAIKELLAEVNL---------------EKQAKELKNELKDA-TGQ 203
Query: 186 RKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 365
++ VRR+++ + F+++ +PEWMV+ ++PV+PP+LRP++Q++GG+ +SD+N+LYRRV
Sbjct: 204 KRTRAVRRLDIVEAFLQSGNKPEWMVMDVVPVIPPDLRPMVQLEGGRFATSDLNDLYRRV 263
Query: 366 IYRNNTLIDLL 398
I RNN L LL
Sbjct: 264 INRNNRLKRLL 274
[204][TOP]
>UniRef100_B2A4D2 DNA-directed RNA polymerase subunit beta' n=1 Tax=Natranaerobius
thermophilus JW/NM-WN-LF RepID=RPOC_NATTJ
Length = 1218
Score = 94.4 bits (233), Expect = 4e-18
Identities = 52/118 (44%), Positives = 76/118 (64%)
Frame = +3
Query: 45 GAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMELAK 224
GA AI+E L +LDL + KEL + T G++K VRR+E+A+
Sbjct: 177 GAEAIKELLKELDLEALT-------KELRNDLKTAK---------GQKKVRTVRRLEVAE 220
Query: 225 HFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
F ++ +PEWM+L ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L LL
Sbjct: 221 SFRKSGNKPEWMILDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLL 278
[205][TOP]
>UniRef100_Q9Z9M1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Bacillus
halodurans RepID=RPOC_BACHD
Length = 1206
Score = 94.4 bits (233), Expect = 4e-18
Identities = 52/118 (44%), Positives = 74/118 (62%)
Frame = +3
Query: 45 GAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMELAK 224
GA AIR+ L+D+DL +D L EE T G+R+ ++R+E+ +
Sbjct: 171 GAEAIRKLLMDIDLDKEVDG-------LKEELQTAQ---------GQRRTRAIKRLEVLE 214
Query: 225 HFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
F + EP WM+L +LPV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L LL
Sbjct: 215 AFRNSGNEPSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLL 272
[206][TOP]
>UniRef100_Q32RY3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Staurastrum
punctulatum RepID=RPOC1_STAPU
Length = 834
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/127 (37%), Positives = 79/127 (62%), Gaps = 7/127 (5%)
Frame = +3
Query: 27 NREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEER-------STHNENEWEDRKVGR 185
+REI +G I+ L++L+L+ + S W+ L E+ S +N + R
Sbjct: 295 SREIITGGYGIQRMLINLNLQNKLVSLQKNWERLVEQTEKMWFPVSGKYKNSDHSADIQR 354
Query: 186 RKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRV 365
K ++R ++ + I++ +PEWMVL +LPVLPP+LRPI+++ G+L++SD+NELYR+V
Sbjct: 355 EKRLIIRSSKIIRDLIQSKTQPEWMVLSVLPVLPPDLRPIVELREGQLITSDLNELYRKV 414
Query: 366 IYRNNTL 386
++RN L
Sbjct: 415 LFRNEDL 421
[207][TOP]
>UniRef100_Q7V007 DNA-directed RNA polymerase subunit gamma n=1 Tax=Prochlorococcus
marinus subsp. pastoris str. CCMP1986 RepID=RPOC1_PROMP
Length = 634
Score = 94.4 bits (233), Expect = 4e-18
Identities = 49/120 (40%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL + + EL EE + G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLDLNQIAE-------ELREEITNSK---------GQKRAKLIKRIR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +F+ TN +PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFLATNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[208][TOP]
>UniRef100_Q9TL05 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nephroselmis
olivacea RepID=RPOC1_NEPOL
Length = 863
Score = 94.4 bits (233), Expect = 4e-18
Identities = 51/122 (41%), Positives = 78/122 (63%)
Frame = +3
Query: 30 REISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRR 209
R+ S GA AI QL L+LR V + + + E E+ K R++ L+RR
Sbjct: 314 RQFSIGAQAIACQLRALNLRSVSRLLSRDLYIIDARETRFGALEEEEMK---RRSKLIRR 370
Query: 210 MELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLI 389
++L +F++T +PEWMV+ LPVLPP+LRPI+Q++GG+ ++D+N+LYRRV+ RNN +
Sbjct: 371 LQLIHYFMQTKAQPEWMVIKALPVLPPDLRPIVQLEGGRFATTDLNDLYRRVLNRNNRFM 430
Query: 390 DL 395
L
Sbjct: 431 KL 432
[209][TOP]
>UniRef100_Q8L146 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anabaena cylindrica
RepID=Q8L146_ANACY
Length = 295
Score = 94.0 bits (232), Expect = 5e-18
Identities = 46/121 (38%), Positives = 76/121 (62%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
EI + QLV +++ I ++ L ++ E+ N E G+++ L++R+
Sbjct: 119 EIEDAIYSEDSQLVGVEVGIGAEALLRLLADINLEQEAENLREEIGNAKGQKRAKLIKRL 178
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
+ +FI T +PEWMV+ ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L
Sbjct: 179 RVIDNFIATGSKPEWMVMAVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLAR 238
Query: 393 L 395
L
Sbjct: 239 L 239
[210][TOP]
>UniRef100_Q2TJW5 DNA-directed RNA polymerase (Fragment) n=1 Tax=uncultured
cyanobacterium RepID=Q2TJW5_9CYAN
Length = 281
Score = 94.0 bits (232), Expect = 5e-18
Identities = 49/121 (40%), Positives = 75/121 (61%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E+ GA A++ L DLDL + D EL EE + + G+++ L++R+
Sbjct: 131 EVGIGAEAVQRLLQDLDLEVAAD-------ELREEIA---------KSKGQKRAKLIKRL 174
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
+ +FI T PEWM++ +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L
Sbjct: 175 RVIDNFIATGSRPEWMIVEHIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLAR 234
Query: 393 L 395
L
Sbjct: 235 L 235
[211][TOP]
>UniRef100_Q0VUQ0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prochlorococcus
marinus str. TATL1 RepID=Q0VUQ0_PROMA
Length = 550
Score = 94.0 bits (232), Expect = 5e-18
Identities = 50/120 (41%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL+ V + +L EE + G+++ L++R+
Sbjct: 118 VGIGAEALKQLLEDLDLQEVAE-------QLREEITGSK---------GQKRAKLIKRLR 161
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 162 VIDNFIATNARPEWMVLNAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 221
[212][TOP]
>UniRef100_B5KYB5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tortella bambergeri
RepID=B5KYB5_9BRYO
Length = 254
Score = 94.0 bits (232), Expect = 5e-18
Identities = 44/62 (70%), Positives = 53/62 (85%)
Frame = +3
Query: 243 IEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPG 422
++PEWMVL LLPVLPPELRP+I++ G+L++SD+NELYRRVIYRNNTLID S STPG
Sbjct: 1 MKPEWMVLSLLPVLPPELRPMIELGEGELITSDLNELYRRVIYRNNTLIDFSARSGSTPG 60
Query: 423 EL 428
L
Sbjct: 61 GL 62
[213][TOP]
>UniRef100_B1HMZ5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lysinibacillus
sphaericus C3-41 RepID=RPOC_LYSSC
Length = 1227
Score = 94.0 bits (232), Expect = 5e-18
Identities = 51/122 (41%), Positives = 73/122 (59%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E S GA AI++ L +DL E TH+ E G+R+ ++R+
Sbjct: 167 EASMGAEAIKKLLGKIDL----------------EDETHSLKEELKSAQGQRRTRAIKRL 210
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
E+ + F + PEWM+L +LPV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L
Sbjct: 211 EVVESFRNSGNSPEWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR 270
Query: 393 LL 398
LL
Sbjct: 271 LL 272
[214][TOP]
>UniRef100_B0TC49 DNA-directed RNA polymerase subunit beta' n=1 Tax=Heliobacterium
modesticaldum Ice1 RepID=RPOC_HELMI
Length = 1180
Score = 94.0 bits (232), Expect = 5e-18
Identities = 50/118 (42%), Positives = 73/118 (61%)
Frame = +3
Query: 45 GAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMELAK 224
GA AI+E LV++DL + E KE+ G+RK +RR+E+ +
Sbjct: 171 GAEAIKELLVEMDLEQLCRELRQELKEV----------------TGQRKVRAIRRLEVVE 214
Query: 225 HFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
F + PEWM++ ++PV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L LL
Sbjct: 215 AFKNSGNRPEWMIMDVIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLL 272
[215][TOP]
>UniRef100_P42076 DNA-directed RNA polymerase subunit gamma n=1 Tax=Prochlorococcus
marinus RepID=RPOC1_PROMA
Length = 634
Score = 94.0 bits (232), Expect = 5e-18
Identities = 50/120 (41%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL+ V + +L EE + G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLDLQEVAE-------QLREEITGSK---------GQKRAKLIKRLR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNARPEWMVLNAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[216][TOP]
>UniRef100_A0T0D8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Phaeodactylum
tricornutum RepID=RPOC1_PHATR
Length = 696
Score = 94.0 bits (232), Expect = 5e-18
Identities = 48/126 (38%), Positives = 81/126 (64%), Gaps = 8/126 (6%)
Frame = +3
Query: 45 GAGAIREQLVDLDLRIVIDSS----LVEWKELGEERSTHNEN----EWEDRKVGRRKNFL 200
GA I+ +L L+L+ I LV K L +E+ ++E+ +WE +++ + +
Sbjct: 238 GAPLIKRELEKLNLKSEIFRMRYFILVCTKVLNKEKPIYDESRWFRKWEQQRIYKIREQA 297
Query: 201 VRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNN 380
++R+ + ++ + T P WM+L +LPV+PP LRP+IQ++GG+ +SD+NELYRR+I RNN
Sbjct: 298 IKRIRILENLVGTGSSPAWMILTILPVIPPALRPMIQLEGGRFATSDLNELYRRIITRNN 357
Query: 381 TLIDLL 398
L+ LL
Sbjct: 358 RLLRLL 363
[217][TOP]
>UniRef100_B8G1V9 DNA-directed RNA polymerase n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8G1V9_DESHD
Length = 1155
Score = 93.6 bits (231), Expect = 6e-18
Identities = 51/120 (42%), Positives = 74/120 (61%)
Frame = +3
Query: 39 SSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMEL 218
S GA AI+ L ++DL + D VE KE+ G+RK +RR+E+
Sbjct: 169 SMGAEAIKMLLEEMDLDKLNDELRVELKEVS----------------GQRKIRAIRRLEV 212
Query: 219 AKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
+ F + PEWM++ ++PV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L LL
Sbjct: 213 VEAFKESGNRPEWMIMDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLL 272
[218][TOP]
>UniRef100_A3Z9B8 DNA-directed RNA polymerase n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z9B8_9SYNE
Length = 634
Score = 93.6 bits (231), Expect = 6e-18
Identities = 49/120 (40%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DL+L V + +L EE + G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLELEAVAE-------QLREEIAGSK---------GQKRAKLIKRLR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN PEWMVL ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNARPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[219][TOP]
>UniRef100_Q250N9 DNA-directed RNA polymerase subunit beta' n=1
Tax=Desulfitobacterium hafniense Y51 RepID=RPOC_DESHY
Length = 1161
Score = 93.6 bits (231), Expect = 6e-18
Identities = 51/120 (42%), Positives = 74/120 (61%)
Frame = +3
Query: 39 SSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMEL 218
S GA AI+ L ++DL + D VE KE+ G+RK +RR+E+
Sbjct: 175 SMGAEAIKMLLEEMDLDKLNDELRVELKEVS----------------GQRKIRAIRRLEV 218
Query: 219 AKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
+ F + PEWM++ ++PV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L LL
Sbjct: 219 VEAFKESGNRPEWMIMDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLL 278
[220][TOP]
>UniRef100_Q8L143 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anabaenopsis
circularis RepID=Q8L143_9NOST
Length = 295
Score = 93.2 bits (230), Expect = 8e-18
Identities = 50/126 (39%), Positives = 77/126 (61%)
Frame = +3
Query: 18 TFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNF 197
T + E+ GA A+ L D++L E + L EE ST G+++
Sbjct: 130 TLQGVEVGIGAEALLRLLADINLE-------QEAESLREEISTAK---------GQKRAK 173
Query: 198 LVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRN 377
L++R+ + +FI T +PEWMV+ ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RN
Sbjct: 174 LIKRLRVIDNFIATGSKPEWMVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRN 233
Query: 378 NTLIDL 395
N L L
Sbjct: 234 NRLARL 239
[221][TOP]
>UniRef100_Q2B2K7 DNA-directed RNA polymerase n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B2K7_9BACI
Length = 1199
Score = 93.2 bits (230), Expect = 8e-18
Identities = 51/122 (41%), Positives = 77/122 (63%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
+ S GA +I++ L D+DL +D+ L EE +T G+R+ ++R+
Sbjct: 167 QASMGAESIKKLLSDIDLNKEVDA-------LKEELTTAQ---------GQRRTRAIKRL 210
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
E+ + F + EP WM+L +LPV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L
Sbjct: 211 EVLEAFRGSGNEPSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR 270
Query: 393 LL 398
LL
Sbjct: 271 LL 272
[222][TOP]
>UniRef100_C6J686 DNA-directed RNA polymerase n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J686_9BACL
Length = 1211
Score = 93.2 bits (230), Expect = 8e-18
Identities = 53/118 (44%), Positives = 76/118 (64%)
Frame = +3
Query: 45 GAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMELAK 224
GA A+++ L DLD ID L KE E R+ G+R+N ++R+E+ +
Sbjct: 178 GAEAVKKLLQDLD----IDKELEFLKE--ELRTAQ----------GQRRNRAIKRLEVIE 221
Query: 225 HFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
F + +PEWM+L +LPV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L LL
Sbjct: 222 AFKSSGNQPEWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLL 279
[223][TOP]
>UniRef100_B0P4S2 DNA-directed RNA polymerase n=1 Tax=Clostridium sp. SS2/1
RepID=B0P4S2_9CLOT
Length = 1199
Score = 93.2 bits (230), Expect = 8e-18
Identities = 50/128 (39%), Positives = 80/128 (62%)
Frame = +3
Query: 15 DTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKN 194
DTFR + GA A++E L +DL E K L +E T G+++
Sbjct: 172 DTFR---VGMGAEAVKELLQAIDLE-------AEAKSLQDEFKT---------ATGQKRA 212
Query: 195 FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYR 374
+V+R+E+ + F+ ++ +PEWM+L +PV+PP++RP++Q+DGG+ +SD+N+LYRR+I R
Sbjct: 213 RIVKRLEVVEAFLNSDNKPEWMILDAVPVIPPDIRPMVQLDGGRFATSDLNDLYRRIINR 272
Query: 375 NNTLIDLL 398
NN L LL
Sbjct: 273 NNRLKRLL 280
[224][TOP]
>UniRef100_B5KYB0 DNA-directed RNA polymerase (Fragment) n=4 Tax=Pottiaceae
RepID=B5KYB0_9BRYO
Length = 252
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/60 (73%), Positives = 51/60 (85%)
Frame = +3
Query: 249 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 428
PEWMVL LLPVLPPELRP+I++ G+L++SD+NELYRRVIYRNNTLID S STPG L
Sbjct: 1 PEWMVLSLLPVLPPELRPMIELGEGELITSDLNELYRRVIYRNNTLIDFSARSGSTPGGL 60
[225][TOP]
>UniRef100_Q8DL56 DNA-directed RNA polymerase subunit gamma n=1
Tax=Thermosynechococcus elongatus BP-1 RepID=RPOC1_THEEB
Length = 622
Score = 93.2 bits (230), Expect = 8e-18
Identities = 50/121 (41%), Positives = 75/121 (61%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E+ GA AI+ L DLDL+ D +L +E G+++ L++R+
Sbjct: 184 EVGIGAEAIQRLLRDLDLQAEAD-------QLRQEILNSK---------GQKRAKLIKRL 227
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
+ +FI T +PEWMVL ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L
Sbjct: 228 RVIDNFIATGAKPEWMVLTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLAR 287
Query: 393 L 395
L
Sbjct: 288 L 288
[226][TOP]
>UniRef100_A9BCH5 DNA-directed RNA polymerase subunit gamma n=1 Tax=Prochlorococcus
marinus str. MIT 9211 RepID=RPOC1_PROM4
Length = 633
Score = 93.2 bits (230), Expect = 8e-18
Identities = 49/120 (40%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DLDL+ + ++ L EE + G+++ L++R+
Sbjct: 190 VGIGAEALQQLLEDLDLKEIAET-------LREEITGSK---------GQKRAKLIKRLR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNARPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[227][TOP]
>UniRef100_C4FNB9 DNA-directed RNA polymerase n=1 Tax=Veillonella dispar ATCC 17748
RepID=C4FNB9_9FIRM
Length = 1391
Score = 92.8 bits (229), Expect = 1e-17
Identities = 52/121 (42%), Positives = 76/121 (62%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
I GA A++ L +LDL + EL EE +T + G+RK VRR+E
Sbjct: 228 IDMGAEAVKALLAELDLEALN-------AELREELNTAS---------GQRKIRAVRRLE 271
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ + F ++ PEWM++ ++PV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 272 VVEAFRQSGNRPEWMIMDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL 331
Query: 396 L 398
L
Sbjct: 332 L 332
[228][TOP]
>UniRef100_B9YNQ0 DNA-directed RNA polymerase n=1 Tax='Nostoc azollae' 0708
RepID=B9YNQ0_ANAAZ
Length = 625
Score = 92.8 bits (229), Expect = 1e-17
Identities = 48/121 (39%), Positives = 75/121 (61%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E+ GA A+ L D++L EE + E E+ K G+++ L++R+
Sbjct: 185 EVGIGAEALLRLLADINL---------------EEEAEKLREEIENAK-GQKRAKLIKRL 228
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
+ +FI T +PEWMV+ ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L
Sbjct: 229 RVIDNFIATGSKPEWMVMAVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLAR 288
Query: 393 L 395
L
Sbjct: 289 L 289
[229][TOP]
>UniRef100_A3VT12 DNA-directed RNA polymerase n=1 Tax=Parvularcula bermudensis
HTCC2503 RepID=A3VT12_9PROT
Length = 1407
Score = 92.8 bits (229), Expect = 1e-17
Identities = 48/118 (40%), Positives = 78/118 (66%)
Frame = +3
Query: 45 GAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMELAK 224
GA AIRE L ++DL + + VE KE + +E + +K L +R++L +
Sbjct: 183 GAEAIREILGNMDLETITEQLRVEIKE--------STSELKPKK-------LAKRLKLIE 227
Query: 225 HFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
+F+++ +PEWM++ ++PV+PPELRP++ +DGG+ +SD+N+LYRRVI RNN L L+
Sbjct: 228 NFMQSGNKPEWMIMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLI 285
[230][TOP]
>UniRef100_A3IG46 DNA-directed RNA polymerase n=1 Tax=Bacillus sp. B14905
RepID=A3IG46_9BACI
Length = 1227
Score = 92.8 bits (229), Expect = 1e-17
Identities = 50/122 (40%), Positives = 73/122 (59%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E + GA AI++ L +DL E TH+ E G+R+ ++R+
Sbjct: 167 EAAMGAEAIKKLLGKIDL----------------EDETHSLKEELKSAQGQRRTRAIKRL 210
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
E+ + F + PEWM+L +LPV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L
Sbjct: 211 EVVESFRNSGNSPEWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR 270
Query: 393 LL 398
LL
Sbjct: 271 LL 272
[231][TOP]
>UniRef100_C9DTW1 RNA polymerase beta subunit (Fragment) n=1 Tax=Andira inermis
RepID=C9DTW1_9FABA
Length = 245
Score = 92.8 bits (229), Expect = 1e-17
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +3
Query: 291 ELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 428
ELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL
Sbjct: 1 ELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 46
[232][TOP]
>UniRef100_C9DTU9 RNA polymerase beta subunit (Fragment) n=1 Tax=Cecropia obtusifolia
RepID=C9DTU9_9ROSA
Length = 249
Score = 92.8 bits (229), Expect = 1e-17
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +3
Query: 291 ELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 428
ELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL
Sbjct: 1 ELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 46
[233][TOP]
>UniRef100_UPI00018554D5 DNA-directed RNA polymerase, beta'''' subunit n=1 Tax=Francisella
novicida FTG RepID=UPI00018554D5
Length = 1417
Score = 92.4 bits (228), Expect = 1e-17
Identities = 50/122 (40%), Positives = 73/122 (59%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E S GA AIR+ L D D+ I+ + E+E+ K +K ++R+
Sbjct: 175 EASMGAEAIRDLLADTDIESEIELL---------------QAEYEESKSTAKKEKAIKRL 219
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
L + F + +PEWMV+ +LPVLPP+LRP++ I+GG+ +SD+N+LYRRVI RNN L
Sbjct: 220 RLLETFQASGNKPEWMVMTVLPVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKK 279
Query: 393 LL 398
LL
Sbjct: 280 LL 281
[234][TOP]
>UniRef100_Q8L135 DNA-directed RNA polymerase (Fragment) n=1 Tax=Fischerella
muscicola RepID=Q8L135_FISMU
Length = 295
Score = 92.4 bits (228), Expect = 1e-17
Identities = 49/126 (38%), Positives = 77/126 (61%)
Frame = +3
Query: 18 TFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNF 197
T + E+ GA A+ L D++L E + L EE +T G+++
Sbjct: 130 TLQGVEVGIGAEALLRLLADINLE-------QEAENLREEITTAK---------GQKRAK 173
Query: 198 LVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRN 377
L++R+ + +FI T +PEWMV+ ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RN
Sbjct: 174 LIKRLRVIDNFIATGSKPEWMVMAVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRN 233
Query: 378 NTLIDL 395
N L L
Sbjct: 234 NRLARL 239
[235][TOP]
>UniRef100_Q7X496 DNA-directed RNA polymerase (Fragment) n=1 Tax=Fischerella sp. IAM
M-263 RepID=Q7X496_9CYAN
Length = 295
Score = 92.4 bits (228), Expect = 1e-17
Identities = 49/126 (38%), Positives = 77/126 (61%)
Frame = +3
Query: 18 TFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNF 197
T + E+ GA A+ L D++L E + L EE +T G+++
Sbjct: 130 TLQGVEVGIGAEALLRLLADINLE-------QEAENLREEITTAK---------GQKRAK 173
Query: 198 LVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRN 377
L++R+ + +FI T +PEWMV+ ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RN
Sbjct: 174 LIKRLRVIDNFIATGSKPEWMVMAVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRN 233
Query: 378 NTLIDL 395
N L L
Sbjct: 234 NRLARL 239
[236][TOP]
>UniRef100_Q05WE8 DNA-directed RNA polymerase n=1 Tax=Synechococcus sp. RS9916
RepID=Q05WE8_9SYNE
Length = 634
Score = 92.4 bits (228), Expect = 1e-17
Identities = 49/120 (40%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DL+L V + +L EE + G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLNLEEVAE-------QLREEIAGSK---------GQKRAKLIKRLR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN PEWMVL ++PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNARPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[237][TOP]
>UniRef100_C9P999 DNA-directed RNA polymerase beta' subunit n=1 Tax=Vibrio
metschnikovii CIP 69.14 RepID=C9P999_VIBME
Length = 1400
Score = 92.4 bits (228), Expect = 1e-17
Identities = 49/118 (41%), Positives = 75/118 (63%)
Frame = +3
Query: 45 GAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMELAK 224
GA AI++ L +DL+ VE +++ EE T N ++ L +R++L +
Sbjct: 181 GAEAIKDLLSSMDLQ-------VETEQMREELETTNSET--------KRKKLTKRLKLVE 225
Query: 225 HFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
F+ + +PEWM+L +LPVLPP+LRP++ +DGG+ +SD+N+LYRRVI RNN L LL
Sbjct: 226 AFLSSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283
[238][TOP]
>UniRef100_C9LRZ7 DNA-directed RNA polymerase, beta' subunit n=1 Tax=Selenomonas
sputigena ATCC 35185 RepID=C9LRZ7_9FIRM
Length = 1351
Score = 92.4 bits (228), Expect = 1e-17
Identities = 49/121 (40%), Positives = 75/121 (61%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A++E LV+LDL + + + +E+ G+RK +RR+E
Sbjct: 159 VGMGAEAVKELLVELDLDKMNEELRKDLREVS----------------GQRKIRAIRRLE 202
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ + F ++ +P WMVL +PV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 203 VVEAFRKSGNQPSWMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL 262
Query: 396 L 398
L
Sbjct: 263 L 263
[239][TOP]
>UniRef100_C2EV88 DNA-directed RNA polymerase n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2EV88_9LACO
Length = 1202
Score = 92.4 bits (228), Expect = 1e-17
Identities = 48/118 (40%), Positives = 75/118 (63%)
Frame = +3
Query: 45 GAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRMELAK 224
GA AI++ L D+DL KE E + E G+++ +RR+++ +
Sbjct: 162 GAAAIKKLLADVDLN----------KEAAELKEELKE------ATGQKRTRAIRRLDILE 205
Query: 225 HFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLL 398
FI++ +PEWMVL ++PV+PP+LRP++Q++GG+ +SD+N+LYRRVI RNN L LL
Sbjct: 206 AFIKSGNKPEWMVLDVIPVMPPDLRPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLL 263
[240][TOP]
>UniRef100_C0V5X3 DNA-directed RNA polymerase n=1 Tax=Veillonella parvula DSM 2008
RepID=C0V5X3_9FIRM
Length = 1391
Score = 92.4 bits (228), Expect = 1e-17
Identities = 52/121 (42%), Positives = 76/121 (62%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
I GA A++ L +LDL + EL EE +T + G+RK VRR+E
Sbjct: 228 IDMGAEAVKALLSELDLEALN-------AELREELNTAS---------GQRKIRAVRRLE 271
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ + F ++ PEWM++ ++PV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 272 VVEAFRQSGNRPEWMIMDIVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL 331
Query: 396 L 398
L
Sbjct: 332 L 332
[241][TOP]
>UniRef100_B6WPW9 DNA-directed RNA polymerase n=1 Tax=Desulfovibrio piger ATCC 29098
RepID=B6WPW9_9DELT
Length = 1389
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/121 (38%), Positives = 73/121 (60%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+R L +LDL E+ T E E K +K L +R++
Sbjct: 185 VGMGAEAVRSLLEELDL---------------EKLRTELREESETTKSQTKKKKLTKRLK 229
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ + F+ +N +PEWM++ ++PV+PPELRP++ +DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 230 IVEAFLESNNKPEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 289
Query: 396 L 398
+
Sbjct: 290 I 290
[242][TOP]
>UniRef100_A7JNM8 DNA-directed RNA polymerase n=1 Tax=Francisella novicida GA99-3548
RepID=A7JNM8_FRANO
Length = 1417
Score = 92.4 bits (228), Expect = 1e-17
Identities = 50/122 (40%), Positives = 73/122 (59%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E S GA AIR+ L D D+ I+ + E+E+ K +K ++R+
Sbjct: 175 EASMGAEAIRDLLADTDIESEIELL---------------QAEYEESKSTAKKEKAIKRL 219
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
L + F + +PEWMV+ +LPVLPP+LRP++ I+GG+ +SD+N+LYRRVI RNN L
Sbjct: 220 RLLETFQASGNKPEWMVMTVLPVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKK 279
Query: 393 LL 398
LL
Sbjct: 280 LL 281
[243][TOP]
>UniRef100_A1HQK3 DNA-directed RNA polymerase n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HQK3_9FIRM
Length = 1316
Score = 92.4 bits (228), Expect = 1e-17
Identities = 50/122 (40%), Positives = 75/122 (61%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
++ GA AI++ L +LDL + E KE+ G+RK +RR+
Sbjct: 167 KVGMGAEAIKKLLEELDLDKMSRELRQELKEVS----------------GQRKIRAIRRL 210
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
E+ + F ++ PEWM+L ++PV+PPELRP++Q+DGG+ +SD+N+LYRRVI RNN L
Sbjct: 211 EVVEAFRKSGNRPEWMILDVIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR 270
Query: 393 LL 398
LL
Sbjct: 271 LL 272
[244][TOP]
>UniRef100_C9DTV4 RNA polymerase beta subunit (Fragment) n=1 Tax=Byrsonima
crassifolia RepID=C9DTV4_BYRCR
Length = 249
Score = 92.4 bits (228), Expect = 1e-17
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +3
Query: 288 PELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 428
PELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTS+STPGEL
Sbjct: 1 PELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSKSTPGEL 47
[245][TOP]
>UniRef100_C7B2E4 DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii
RepID=C7B2E4_9TRAC
Length = 696
Score = 92.4 bits (228), Expect = 1e-17
Identities = 52/124 (41%), Positives = 71/124 (57%)
Frame = +3
Query: 15 DTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKN 194
D RE ++G AIRE D + + D + EW T + E EDR R K+
Sbjct: 186 DESMEREATTGGDAIREPSASPDPKALSDRAHAEWGFWMSGGPTTGD-ELEDRTTQRGKD 244
Query: 195 FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYR 374
LVR + L K+ +RT PEW V L PV PPE RP++Q+ G+++S DINE +RR+I R
Sbjct: 245 LLVRHIGLLKNLVRTKTNPEWTVPSLSPVPPPEPRPMVQLGEGRMISPDINEPHRRIILR 304
Query: 375 NNTL 386
NN+L
Sbjct: 305 NNSL 308
[246][TOP]
>UniRef100_C0JX51 DNA-directed RNA polymerase n=1 Tax=Pyramimonas parkeae
RepID=C0JX51_9CHLO
Length = 667
Score = 92.4 bits (228), Expect = 1e-17
Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Frame = +3
Query: 3 THGFDTFRNREISS-GAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKV 179
T D+F N + GA AI + L + ++ +++ L ++ +L + ++ K+
Sbjct: 196 TRSRDSFLNGPTDNFGAQAIEKTLSEKNIEQMVEILLAQYNKLPKNVIDYDSKM--AAKI 253
Query: 180 GRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYR 359
R+K + RR+ F + IEP+WM+L LPVLPP+LRP++Q++GG+ +SD+N+LYR
Sbjct: 254 LRKKKTIARRIRFLSFFCDSGIEPKWMILHYLPVLPPDLRPMVQLNGGRFATSDLNDLYR 313
Query: 360 RVIYRNNTLIDLLT 401
R+I RNN L LT
Sbjct: 314 RIINRNNRLKKFLT 327
[247][TOP]
>UniRef100_A0Q866 DNA-directed RNA polymerase subunit beta' n=3 Tax=Francisella
novicida RepID=RPOC_FRATN
Length = 1417
Score = 92.4 bits (228), Expect = 1e-17
Identities = 50/122 (40%), Positives = 73/122 (59%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
E S GA AIR+ L D D+ I+ + E+E+ K +K ++R+
Sbjct: 175 EASMGAEAIRDLLADTDIESEIELL---------------QAEYEESKSTAKKEKAIKRL 219
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
L + F + +PEWMV+ +LPVLPP+LRP++ I+GG+ +SD+N+LYRRVI RNN L
Sbjct: 220 RLLETFQASGNKPEWMVMTVLPVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKK 279
Query: 393 LL 398
LL
Sbjct: 280 LL 281
[248][TOP]
>UniRef100_Q32RG1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Zygnema
circumcarinatum RepID=RPOC1_ZYGCR
Length = 715
Score = 92.4 bits (228), Expect = 1e-17
Identities = 48/139 (34%), Positives = 81/139 (58%), Gaps = 14/139 (10%)
Frame = +3
Query: 12 FDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHN------------- 152
F + RE+ +GA I + L L+L + + +WK L ++
Sbjct: 202 FHLIQIREMLTGADVIHKLLSGLNLTNAMFHARNQWKHLAKKAPESQSEVIEAQGPVPQA 261
Query: 153 -ENEWEDRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKL 329
E + D+ + ++K+ ++RR+ L + +++ +PEWMVL LPVLPP+LRPI+++ G+L
Sbjct: 262 EEEKQRDQSIQQQKDAVLRRITLIRDLLQSQTQPEWMVLRTLPVLPPDLRPILELKDGQL 321
Query: 330 MSSDINELYRRVIYRNNTL 386
+ SD+NELYRRV+YRN +
Sbjct: 322 IRSDLNELYRRVLYRNQLI 340
[249][TOP]
>UniRef100_A2C6S9 DNA-directed RNA polymerase subunit gamma n=1 Tax=Prochlorococcus
marinus str. MIT 9303 RepID=RPOC1_PROM3
Length = 634
Score = 92.4 bits (228), Expect = 1e-17
Identities = 49/120 (40%), Positives = 76/120 (63%)
Frame = +3
Query: 36 ISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRME 215
+ GA A+++ L DL+L V + +L E+ S+ G+++ L++R+
Sbjct: 190 VGIGAEALKQLLEDLNLAEVAE-------QLREDISSSK---------GQKRAKLIKRLR 233
Query: 216 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 395
+ +FI TN PEWMVL +PV+PP+LRP++Q+DGG+ +SD+N+LYRRVI RNN L L
Sbjct: 234 VIDNFIATNARPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARL 293
[250][TOP]
>UniRef100_B8E1C7 DNA-directed RNA polymerase n=1 Tax=Dictyoglomus turgidum DSM 6724
RepID=B8E1C7_DICTD
Length = 1427
Score = 92.0 bits (227), Expect = 2e-17
Identities = 49/122 (40%), Positives = 77/122 (63%)
Frame = +3
Query: 33 EISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERSTHNENEWEDRKVGRRKNFLVRRM 212
++ GA AI++ L DLDL E +++ + + G++K L++R+
Sbjct: 166 KVGMGAEAIKKLLRDLDL----------------EELSYDLKKQINEIQGQKKAKLIKRL 209
Query: 213 ELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLID 392
E+ + F + +PEWMVL +LPV+PP+LRP++Q++GGK +SD+N+LYRRVI RNN L
Sbjct: 210 EIVESFRLSGNKPEWMVLEVLPVIPPDLRPMVQLEGGKFATSDLNDLYRRVINRNNRLAK 269
Query: 393 LL 398
LL
Sbjct: 270 LL 271