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[1][TOP]
>UniRef100_B9RC12 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9RC12_RICCO
Length = 1475
Score = 169 bits (427), Expect = 1e-40
Identities = 84/141 (59%), Positives = 107/141 (75%)
Frame = +2
Query: 2 VDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRG 181
+DP+FI K+V ++ + LN F VTPN HRVTE +H SNG +L FDDRTRA KK+VDFRG
Sbjct: 208 IDPNFIRKFVLKRDSIFLNCFSVTPNCHRVTEVTHAFSNGQRLVFDDRTRAYKKMVDFRG 267
Query: 182 PAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDC 361
A ELS V++ L SK+NPDK+ +N QRK+ +++ +SSGLRW+KDVVLGKRND
Sbjct: 268 IAKELSFRVLDCLKTSKINPDKSVNNDDYMALQRKMNDSSSSSSGLRWIKDVVLGKRNDN 327
Query: 362 SFRTVVVGDPDLALSEIGVPC 424
SFR VVVGDP++ SEIG+PC
Sbjct: 328 SFRMVVVGDPNIKFSEIGIPC 348
[2][TOP]
>UniRef100_B9GKP9 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9GKP9_POPTR
Length = 1517
Score = 160 bits (404), Expect = 5e-38
Identities = 82/141 (58%), Positives = 101/141 (71%)
Frame = +2
Query: 2 VDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRG 181
VDP+FI+ + + + LN FPVTPN HRVTE +H SNG +L FD+RTRA KK+VDFRG
Sbjct: 241 VDPNFIKLSILKTDTIFLNCFPVTPNSHRVTEVTHAFSNGQRLIFDERTRAYKKMVDFRG 300
Query: 182 PAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDC 361
A LS HV++ L SKLNPDK+ + Q +K + N+SGLRW+KDVVLGKRND
Sbjct: 301 VANTLSFHVMDCLKTSKLNPDKSGNIDPWTAQPKKSNDYVNNASGLRWIKDVVLGKRNDH 360
Query: 362 SFRTVVVGDPDLALSEIGVPC 424
SFR V+VGDP L L EIG+PC
Sbjct: 361 SFRMVIVGDPHLQLHEIGIPC 381
[3][TOP]
>UniRef100_UPI0001982C31 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001982C31
Length = 1391
Score = 139 bits (351), Expect = 7e-32
Identities = 73/141 (51%), Positives = 92/141 (65%)
Frame = +2
Query: 2 VDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRG 181
+DP FI+++V R LN PVTPN HRVTE +H SNG L FD +RA KKLVDFRG
Sbjct: 131 IDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRG 190
Query: 182 PAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDC 361
A ELS V++ L SKL +K+ S ++A SGL+W+K+V+LGKR +
Sbjct: 191 TANELSCRVLDCLKTSKLRSEKSTSK-----------DSASKMSGLKWIKEVLLGKRTNH 239
Query: 362 SFRTVVVGDPDLALSEIGVPC 424
SFR +VVGDP L LSEIG+PC
Sbjct: 240 SFRMIVVGDPKLRLSEIGIPC 260
[4][TOP]
>UniRef100_A5BZZ3 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A5BZZ3_VITVI
Length = 1393
Score = 137 bits (344), Expect = 5e-31
Identities = 74/141 (52%), Positives = 93/141 (65%)
Frame = +2
Query: 2 VDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRG 181
+DP FI+++V R LN PVTPN HRVTE +H SNG L FD +RA KKLVDFRG
Sbjct: 213 IDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRG 272
Query: 182 PAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDC 361
A ELS V++ L SK SN+ +E K ++A SGL+W+K+V+LGKR +
Sbjct: 273 TANELSCRVLDCLKTSK------ASNLRSEKSTSK--DSASKMSGLKWIKEVLLGKRTNH 324
Query: 362 SFRTVVVGDPDLALSEIGVPC 424
SFR +VVGDP L LSEIG+PC
Sbjct: 325 SFRMIVVGDPKLRLSEIGIPC 345
[5][TOP]
>UniRef100_A7QKE4 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7QKE4_VITVI
Length = 1360
Score = 122 bits (306), Expect = 1e-26
Identities = 67/141 (47%), Positives = 81/141 (57%)
Frame = +2
Query: 2 VDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRG 181
+DP FI+++V R LN PVTPN HRVTE +H SNG L FD +RA KKLVDFRG
Sbjct: 208 IDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRG 267
Query: 182 PAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDC 361
A ELS H +A SGL+W+K+V+LGKR +
Sbjct: 268 TANELSCH------------------------------SASKMSGLKWIKEVLLGKRTNH 297
Query: 362 SFRTVVVGDPDLALSEIGVPC 424
SFR +VVGDP L LSEIG+PC
Sbjct: 298 SFRMIVVGDPKLRLSEIGIPC 318
[6][TOP]
>UniRef100_Q9LQ02 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q9LQ02_ARATH
Length = 1453
Score = 121 bits (303), Expect = 3e-26
Identities = 68/140 (48%), Positives = 91/140 (65%)
Frame = +2
Query: 2 VDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRG 181
+D I+K +P + L L FPVTPNG+RVTE H+ NG +L FD+RTR KKLV F G
Sbjct: 203 IDQRLIKKDIPMFNSLGLTSFPVTPNGYRVTEIVHQ-FNGARLIFDERTRIYKKLVGFEG 261
Query: 182 PAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDC 361
+ELSS V+ + S+L + S+ + +K + GLR+MKDV+LGKR+D
Sbjct: 262 NTLELSSRVMECMQYSRLFSETVSSSKDSANPYQKKSDTP-KLCGLRFMKDVLLGKRSDH 320
Query: 362 SFRTVVVGDPDLALSEIGVP 421
+FRTVVVGDP L L+EIG+P
Sbjct: 321 TFRTVVVGDPSLKLNEIGIP 340
[7][TOP]
>UniRef100_C0JR68 DNA-directed RNA polymerase n=1 Tax=Zea mays RepID=C0JR68_MAIZE
Length = 1444
Score = 102 bits (255), Expect = 1e-20
Identities = 57/141 (40%), Positives = 89/141 (63%), Gaps = 2/141 (1%)
Frame = +2
Query: 5 DPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGP 184
DP+ I+++V R+ LL L+ PVTPN HRV E + +G +L+FDDRT+A K++VD
Sbjct: 219 DPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRR 277
Query: 185 AVELSSHVINSLSLSKLNPDKTPSNM-FTELQQRKV-GENACNSSGLRWMKDVVLGKRND 358
+ H S+ S L + + ++L +K GE + ++ G++W+KDVVL KR+D
Sbjct: 278 IDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKADGETSTDTYGMKWLKDVVLSKRSD 337
Query: 359 CSFRTVVVGDPDLALSEIGVP 421
FR+++VGDP + L EIG+P
Sbjct: 338 NVFRSIMVGDPKIKLWEIGIP 358
[8][TOP]
>UniRef100_C0JR65 DNA-directed RNA polymerase n=2 Tax=Zea mays RepID=C0JR65_MAIZE
Length = 1444
Score = 102 bits (255), Expect = 1e-20
Identities = 57/141 (40%), Positives = 89/141 (63%), Gaps = 2/141 (1%)
Frame = +2
Query: 5 DPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGP 184
DP+ I+++V R+ LL L+ PVTPN HRV E + +G +L+FDDRT+A K++VD
Sbjct: 219 DPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRR 277
Query: 185 AVELSSHVINSLSLSKLNPDKTPSNM-FTELQQRKV-GENACNSSGLRWMKDVVLGKRND 358
+ H S+ S L + + ++L +K GE + ++ G++W+KDVVL KR+D
Sbjct: 278 IDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKADGETSTDTYGMKWLKDVVLSKRSD 337
Query: 359 CSFRTVVVGDPDLALSEIGVP 421
FR+++VGDP + L EIG+P
Sbjct: 338 NVFRSIMVGDPKIKLWEIGIP 358
[9][TOP]
>UniRef100_Q01JX0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa RepID=Q01JX0_ORYSA
Length = 1407
Score = 98.2 bits (243), Expect = 2e-19
Identities = 51/140 (36%), Positives = 83/140 (59%)
Frame = +2
Query: 2 VDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRG 181
+DP+ I + R+ LL L+ PVTPN HRV E + S+GP+L+FDDRT+A K++VD
Sbjct: 221 LDPELINQVTRRRELLFLSCLPVTPNCHRVAEMPYGHSDGPRLAFDDRTKAYKRMVDL-- 278
Query: 182 PAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDC 361
SK + D++ + + ++ G++W+KD++L KR+D
Sbjct: 279 --------------YSKKSDDESSA--------------STDTYGIKWLKDIILSKRSDN 310
Query: 362 SFRTVVVGDPDLALSEIGVP 421
+FR+++VGDP + L+EIG+P
Sbjct: 311 AFRSIMVGDPKINLNEIGIP 330
[10][TOP]
>UniRef100_C0JR69 Mutant DNA dependent RNA polymerase D largest subunit rpd1-14 n=1
Tax=Zea mays RepID=C0JR69_MAIZE
Length = 352
Score = 94.4 bits (233), Expect = 4e-18
Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
Frame = +2
Query: 5 DPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGP 184
DP+ I+++V R+ LL L+ PVTPN HRV E + +G +L+FDDRT+A K++VD
Sbjct: 219 DPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRR 277
Query: 185 AVELSSHVINSLSLSKLNPDKTPSNM-FTELQQRKV-GENACNSSGLRWMKDVVLGKRND 358
+ H S+ S L + + ++L +K GE + ++ G++W+KDVVL KR+D
Sbjct: 278 IDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKADGETSTDTYGMKWLKDVVLSKRSD 337
Query: 359 CSFRTVVVGDPDLAL 403
FR+++VGDP + L
Sbjct: 338 NVFRSIMVGDPKIKL 352
[11][TOP]
>UniRef100_C5YE51 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YE51_SORBI
Length = 1203
Score = 71.2 bits (173), Expect = 3e-11
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Frame = +2
Query: 5 DPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGP 184
DP+ I+++V R+ LL L+ PVTPN HRV E + S+G
Sbjct: 204 DPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLSDG--------------------- 242
Query: 185 AVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKV-GENACNSSGLRWMKDVVLGKRNDC 361
T L +K GE + + SG++W+KD VL KR+D
Sbjct: 243 -------------------------RVTFLYSKKTDGETSTDPSGMKWLKDAVLSKRSDN 277
Query: 362 SFRTVVVGDPDLALSEIGVP 421
+FR+ +VGDP + L EIG+P
Sbjct: 278 AFRSTMVGDPKIKLWEIGIP 297
[12][TOP]
>UniRef100_B8AT49 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8AT49_ORYSI
Length = 1598
Score = 56.2 bits (134), Expect = 1e-06
Identities = 30/95 (31%), Positives = 53/95 (55%)
Frame = +2
Query: 137 DDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSG 316
DDRT+A K++VD SK + D++ + + ++ G
Sbjct: 239 DDRTKAYKRMVDL----------------YSKKSDDESSA--------------STDTYG 268
Query: 317 LRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVP 421
++W+KD++L KR+D +FR+++VGDP + L+EIG+P
Sbjct: 269 IKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIP 303
[13][TOP]
>UniRef100_Q7XTZ3 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XTZ3_ORYSJ
Length = 1664
Score = 55.1 bits (131), Expect = 2e-06
Identities = 30/95 (31%), Positives = 52/95 (54%)
Frame = +2
Query: 137 DDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSG 316
DDRT+A K++VD SK + D++ + + ++ G
Sbjct: 271 DDRTKAYKRMVDL----------------YSKKSDDESSA--------------STDTYG 300
Query: 317 LRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVP 421
+W+KD++L KR+D +FR+++VGDP + L+EIG+P
Sbjct: 301 TKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIP 335
[14][TOP]
>UniRef100_B9FC30 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FC30_ORYSJ
Length = 1623
Score = 55.1 bits (131), Expect = 2e-06
Identities = 30/95 (31%), Positives = 52/95 (54%)
Frame = +2
Query: 137 DDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSG 316
DDRT+A K++VD SK + D++ + + ++ G
Sbjct: 260 DDRTKAYKRMVDL----------------YSKKSDDESSA--------------STDTYG 289
Query: 317 LRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVP 421
+W+KD++L KR+D +FR+++VGDP + L+EIG+P
Sbjct: 290 TKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIP 324
[15][TOP]
>UniRef100_B9G500 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9G500_ORYSJ
Length = 1384
Score = 53.1 bits (126), Expect = 9e-06
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Frame = +2
Query: 224 LSKLNPDKTPSNMFTELQQRKV-GENACNSS--GLRWMKDVVLGKRNDCSFRTVVVGDPD 394
L L+P+ + +L RK GE+ + G +W+KD++L KR+D +FR+++VGDP
Sbjct: 244 LKNLDPE-----LINQLYSRKSDGEDPTSPDTYGTKWLKDIILSKRSDNAFRSIMVGDPK 298
Query: 395 LALSEIGVP 421
+ L+EIG+P
Sbjct: 299 INLNEIGIP 307
[16][TOP]
>UniRef100_B8BED0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8BED0_ORYSI
Length = 1384
Score = 53.1 bits (126), Expect = 9e-06
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Frame = +2
Query: 224 LSKLNPDKTPSNMFTELQQRKV-GENACNSS--GLRWMKDVVLGKRNDCSFRTVVVGDPD 394
L L+P+ + +L RK GE+ + G +W+KD++L KR+D +FR+++VGDP
Sbjct: 244 LKNLDPE-----LINQLYSRKSDGEDPTSPDTYGTKWLKDIILSKRSDNAFRSIMVGDPK 298
Query: 395 LALSEIGVP 421
+ L+EIG+P
Sbjct: 299 INLNEIGIP 307