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[1][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 229 bits (585), Expect = 6e-59
Identities = 113/134 (84%), Positives = 120/134 (89%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
MEG SYARMPRVKI LKDD +FELRDTDAS+ANALRRVMISEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VLNDEFIAHRLGLIPLT+ERAMAMRFSRDCDACDGDG CE+CSV FHLRVKC+TD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
Query: 401 TXXDLYCSDHXVCP 442
+ DL SDH V P
Sbjct: 121 SSKDLISSDHTVTP 134
[2][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 226 bits (576), Expect = 6e-58
Identities = 111/137 (81%), Positives = 120/137 (87%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
MEGVSY R P++KI +KDD A+FELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VLNDEFIAHRLGLIPLT+ERAMAMRFSRDCDACDGDG CEFCSV FHLR KCMTD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 401 TXXDLYCSDHXVCPC*F 451
T DL SDH V P F
Sbjct: 121 TSKDLISSDHTVVPVDF 137
[3][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 225 bits (573), Expect = 1e-57
Identities = 109/137 (79%), Positives = 119/137 (86%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
MEG SY R PR+KI LKDD +FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VLNDEFIAHRLGLIPLT+ERAM+MRFSRDCDACDGDG C++CSV FHLR KC+TD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120
Query: 401 TXXDLYCSDHXVCPC*F 451
T DLY SDH V P F
Sbjct: 121 TSKDLYSSDHTVVPVDF 137
[4][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 225 bits (573), Expect = 1e-57
Identities = 110/137 (80%), Positives = 120/137 (87%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
MEGVSY R P++KI +KDD A+FELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VLNDEFIAHRLGLIPLT+ERAM+MRFSRDCDACDGDG CEFCSV FHLR KCMTD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 401 TXXDLYCSDHXVCPC*F 451
T DL SDH V P F
Sbjct: 121 TSKDLISSDHTVVPVDF 137
[5][TOP]
>UniRef100_Q45NH1 DNA-directed RNA polymerase II third largest subunit (Fragment) n=1
Tax=Medicago sativa RepID=Q45NH1_MEDSA
Length = 184
Score = 222 bits (566), Expect = 9e-57
Identities = 110/129 (85%), Positives = 116/129 (89%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YARMPRVKI LKDD +FELRDTDAS+ANALRRVMISEVPTIAIDLVEIEVNSSVLNDE
Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60
Query: 236 FIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
FIAHRLGLIPLT+ERAMAMRFSRDCDACDGDG CE+CSV FHLRVKC+TD TLDV+ DL
Sbjct: 61 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDL 120
Query: 416 YCSDHXVCP 442
SDH V P
Sbjct: 121 ISSDHTVTP 129
[6][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 221 bits (564), Expect = 2e-56
Identities = 108/137 (78%), Positives = 118/137 (86%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
ME VSY R P++KI +KDD +FELR+TDAS+ANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1 MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VLNDEFIAHRLGLIPLT+ERAM MRFSRDCDACDGDG CE+CSV FHLR KC+TD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120
Query: 401 TXXDLYCSDHXVCPC*F 451
T DLY SDH V P F
Sbjct: 121 TSKDLYSSDHAVIPVDF 137
[7][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 212 bits (540), Expect = 9e-54
Identities = 104/137 (75%), Positives = 116/137 (84%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
M+G +Y R P++KI LKDD A+FELR+TD S+ANALRRVMISEVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VLNDEFIAHRLGLIPLT+ERAM+MRFSRDCDACDGDG CEFCSV F L KC+TD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 401 TXXDLYCSDHXVCPC*F 451
T DLY +D V P F
Sbjct: 121 TSRDLYSADPTVTPVDF 137
[8][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 209 bits (532), Expect = 8e-53
Identities = 103/137 (75%), Positives = 115/137 (83%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
M+G +Y R P++KI LKDD A+FELR+TD S+ANALRRVMISEVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VLNDEFIAHRLGLI LT+ERAM+MRFSRDCDACDGDG CEFCSV F L KC+TD TLDV
Sbjct: 61 VLNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 401 TXXDLYCSDHXVCPC*F 451
T DLY +D V P F
Sbjct: 121 TSRDLYSADPTVTPVDF 137
[9][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 201 bits (510), Expect = 3e-50
Identities = 101/133 (75%), Positives = 112/133 (84%), Gaps = 1/133 (0%)
Frame = +2
Query: 47 GVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 226
GVSY R PRV+I LKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66
Query: 227 NDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCM-TDXTLDVT 403
NDEFIAHRLGLIPLT+ AMAMRFSRDCDACDGDG CE+CSV FHL + +D TL+VT
Sbjct: 67 NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 126
Query: 404 XXDLYCSDHXVCP 442
DL +D VCP
Sbjct: 127 SNDLRSTDPKVCP 139
[10][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 199 bits (505), Expect = 1e-49
Identities = 95/134 (70%), Positives = 110/134 (82%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
M+ VSY R P V+I +KDD+ +FELRDTDASIANALRR+MI+EVPT+AIDLVEIE NSS
Sbjct: 1 MDNVSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VLNDEF+AHRLGLIP+ ++RAM MR SRDCDACDGDG CE+CS+ FHL VKC D TLDV
Sbjct: 61 VLNDEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDV 120
Query: 401 TXXDLYCSDHXVCP 442
T DL SD + P
Sbjct: 121 TSLDLVSSDPSIIP 134
[11][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 197 bits (500), Expect = 4e-49
Identities = 100/133 (75%), Positives = 109/133 (81%), Gaps = 1/133 (0%)
Frame = +2
Query: 47 GVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 226
G SY R PRV+I LKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 6 GTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 227 NDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCM-TDXTLDVT 403
NDEFIAHRLGLIPLT+ AM MRFSRDCDACDGDG CE+CSV FHL V +D TL+VT
Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVT 125
Query: 404 XXDLYCSDHXVCP 442
DL D VCP
Sbjct: 126 SNDLRSMDPKVCP 138
[12][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 196 bits (499), Expect = 5e-49
Identities = 99/133 (74%), Positives = 109/133 (81%), Gaps = 1/133 (0%)
Frame = +2
Query: 47 GVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 226
G SY R PRV+I LKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 6 GASYQRFPRVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 227 NDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCM-TDXTLDVT 403
NDEFIAHRLGLIPLT+ AM MRFSRDCDACDGDG CE+CSV FHL + +D TL+VT
Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 125
Query: 404 XXDLYCSDHXVCP 442
DL D VCP
Sbjct: 126 SNDLRSMDPKVCP 138
[13][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
RepID=A8MR04_ARATH
Length = 235
Score = 190 bits (483), Expect = 4e-47
Identities = 96/137 (70%), Positives = 110/137 (80%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
M+GV+Y R P VKI LKDD A+FELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VLNDEFIA RL LIPLT+ERAM+MRF +DC+ C+GD CEFCSV F L KC+TD TLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 401 TXXDLYCSDHXVCPC*F 451
T DLY +D V P F
Sbjct: 121 TSRDLYSADPTVTPVDF 137
[14][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 190 bits (483), Expect = 4e-47
Identities = 96/137 (70%), Positives = 110/137 (80%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
M+GV+Y R P VKI LKDD A+FELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VLNDEFIA RL LIPLT+ERAM+MRF +DC+ C+GD CEFCSV F L KC+TD TLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 401 TXXDLYCSDHXVCPC*F 451
T DLY +D V P F
Sbjct: 121 TSRDLYSADPTVTPVDF 137
[15][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 144 bits (363), Expect = 3e-33
Identities = 76/134 (56%), Positives = 94/134 (70%), Gaps = 2/134 (1%)
Frame = +2
Query: 47 GVSYARMPRVKILXLKD--DMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
GVSY R+P V I+ ++ RF+L +TD S+AN+LRR M+ EVPT+A DLVEIE+NSS
Sbjct: 17 GVSYHRLPTVSIMESMSSRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSS 76
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VL DEFIAHRLGLIPLT++RAM M F +CD+C GD C+ C+V F L VK D DV
Sbjct: 77 VLTDEFIAHRLGLIPLTSDRAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIKDV 136
Query: 401 TXXDLYCSDHXVCP 442
T DL S+ V P
Sbjct: 137 TQRDLKSSNDAVVP 150
[16][TOP]
>UniRef100_A8PAX3 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Brugia malayi RepID=A8PAX3_BRUMA
Length = 275
Score = 131 bits (329), Expect = 3e-29
Identities = 69/130 (53%), Positives = 89/130 (68%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L D++ RF L DTD S+AN+LRR+ ++EVPT+AID V+IE NSSVL+DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + M+FSRDC + C+FC+V LRV+C + VT D
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTE---FCQFCAVEMRLRVRCDDEGIRAVTTAD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LETSNPDVAP 129
[17][TOP]
>UniRef100_C1BV58 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Lepeophtheirus
salmonis RepID=C1BV58_9MAXI
Length = 279
Score = 130 bits (327), Expect = 5e-29
Identities = 68/130 (52%), Positives = 90/130 (69%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P + I L +D+ +F L DTD S+ANA+RRVMI+E P +AID V++E NS+VL+DE
Sbjct: 3 YANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLG+IPLT++ A+ +M++SRDC D C C+V F L VKC + T +VT D
Sbjct: 63 FIAHRLGMIPLTSDDAVDSMQYSRDCTCTD---FCRECAVEFTLDVKCHEETTRNVTSAD 119
Query: 413 LYCSDHXVCP 442
L SD V P
Sbjct: 120 LKSSDPKVIP 129
[18][TOP]
>UniRef100_UPI00019253CC PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI00019253CC
Length = 273
Score = 129 bits (325), Expect = 8e-29
Identities = 72/130 (55%), Positives = 88/130 (67%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA PRVKIL DD +F L +TD S+AN+LRR+ I+EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 236 FIAHRLGLIPLTT-ERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIPLT+ E+ M +SRDC + C+ CSV F L VKC + T VT D
Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L D V P
Sbjct: 120 LISEDPKVIP 129
[19][TOP]
>UniRef100_UPI0001925380 PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI0001925380
Length = 289
Score = 129 bits (325), Expect = 8e-29
Identities = 72/130 (55%), Positives = 88/130 (67%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA PRVKIL DD +F L +TD S+AN+LRR+ I+EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 236 FIAHRLGLIPLTT-ERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIPLT+ E+ M +SRDC + C+ CSV F L VKC + T VT D
Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L D V P
Sbjct: 120 LISEDPKVIP 129
[20][TOP]
>UniRef100_B7QL55 RNA polymerase II, subunit POLR2C/RPB3, putative n=1 Tax=Ixodes
scapularis RepID=B7QL55_IXOSC
Length = 274
Score = 126 bits (316), Expect = 9e-28
Identities = 68/130 (52%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L D+ +F + DTD S+AN+LRRV I+EV T+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + M++SRDC D C CSV F + VKC+ + T VT D
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCAD---FCTECSVEFTIDVKCLDEQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L SD V P
Sbjct: 120 LKSSDPRVVP 129
[21][TOP]
>UniRef100_UPI0000E4A699 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E4A699
Length = 275
Score = 124 bits (311), Expect = 3e-27
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P +++ L DD +F + DTD S+AN++RR +++EVPTIAID VEI+ NSSVL+DE
Sbjct: 3 YANQPTIQLTELTDDNVKFIIEDTDLSVANSIRRTILAEVPTIAIDWVEIQANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FI+HR+GLIPLT++ + + F+RDC + C CSV L VKC D T VT D
Sbjct: 63 FISHRVGLIPLTSDEVVDKLNFNRDCGC---EEFCSDCSVELSLDVKCTDDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LLSSNQKVVP 129
[22][TOP]
>UniRef100_Q76L19 Homologue of DNA-directed RNA polymerase II subunit n=1
Tax=Antheraea pernyi RepID=Q76L19_ANTPE
Length = 275
Score = 124 bits (310), Expect = 4e-27
Identities = 65/130 (50%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L DD +F + DT+ S+AN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + +R+SRDC D C CSV F L VKC D T VT D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCAD---FCSECSVEFTLDVKCTDDQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L SD V P
Sbjct: 120 LKSSDPRVVP 129
[23][TOP]
>UniRef100_UPI0000D5785C PREDICTED: similar to DNA-directed RNA polymerase II subunit n=1
Tax=Tribolium castaneum RepID=UPI0000D5785C
Length = 274
Score = 123 bits (308), Expect = 7e-27
Identities = 65/130 (50%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L DD +F + DTD S+AN++RRV+I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + +++ RDC D C CSV F L VKC D T VT D
Sbjct: 63 FLAHRIGLIPLISDDVVQRLQYPRDCICTD---FCHECSVEFTLDVKCTDDHTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L SD V P
Sbjct: 120 LKSSDPRVIP 129
[24][TOP]
>UniRef100_Q7ZV11 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Danio
rerio RepID=Q7ZV11_DANRE
Length = 275
Score = 123 bits (308), Expect = 7e-27
Identities = 65/130 (50%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P VKI L D+ +F + +TD ++AN++RRV +SEVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPLT++ + M++SRDC D C CSV L V+C D T VT D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L ++ V P
Sbjct: 120 LLSNNPRVIP 129
[25][TOP]
>UniRef100_C3Z918 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z918_BRAFL
Length = 275
Score = 123 bits (308), Expect = 7e-27
Identities = 64/130 (49%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P+V + L D+ +F + DTD S+ANA+RR+ I+EVPT+AID V++E NSSVL+DE
Sbjct: 3 YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIPLT++ + M++SRDC + C C++ L VKC D T VT D
Sbjct: 63 FIAHRVGLIPLTSDDIVDRMQYSRDCTCAE---FCADCAIELTLDVKCTDDQTRHVTTRD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LISSNPRVVP 129
[26][TOP]
>UniRef100_A7SI64 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SI64_NEMVE
Length = 274
Score = 123 bits (308), Expect = 7e-27
Identities = 67/130 (51%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P VKIL L D+ +F + T S+AN LRR+ I+E PTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGL+PLT++ + M FSRDC D C+ CS+ F L VKC D T VT D
Sbjct: 63 FIAHRLGLVPLTSDEVVDRMTFSRDCTC---DEFCDDCSIEFTLDVKCTDDSTRHVTTQD 119
Query: 413 LYCSDHXVCP 442
L ++ P
Sbjct: 120 LISTNPRCVP 129
[27][TOP]
>UniRef100_UPI000186DA34 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186DA34
Length = 275
Score = 122 bits (307), Expect = 1e-26
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L D+ +F++ DT+ S+AN++RRV I+E PT+AID V++E NS+VL DE
Sbjct: 3 YANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FI+HR+GLIPLT++ + ++++RDC D C CSV F L VKC D T VT D
Sbjct: 63 FISHRVGLIPLTSDEVVDRIQYTRDCTCLD---FCPECSVEFTLDVKCTDDHTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L SD V P
Sbjct: 120 LKSSDPRVLP 129
[28][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 122 bits (307), Expect = 1e-26
Identities = 66/127 (51%), Positives = 82/127 (64%)
Frame = +2
Query: 62 RMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 241
R P ++IL +K+D F L +TD S+ANALRRVMI+EVPT+ IDLVE E N+SVL DEFI
Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69
Query: 242 AHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYC 421
AHRLGLIPL ++ ++RDC D C+ CSV L VKC + DVT DL
Sbjct: 70 AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 126
Query: 422 SDHXVCP 442
+ V P
Sbjct: 127 QNSAVIP 133
[29][TOP]
>UniRef100_UPI000194E98D PREDICTED: hypothetical protein, partial n=1 Tax=Taeniopygia
guttata RepID=UPI000194E98D
Length = 129
Score = 122 bits (305), Expect = 2e-26
Identities = 66/130 (50%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + M++SRDC D C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L ++ V P
Sbjct: 120 LISNNPRVIP 129
[30][TOP]
>UniRef100_UPI00006A469F PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 n=1 Tax=Ciona intestinalis
RepID=UPI00006A469F
Length = 277
Score = 122 bits (305), Expect = 2e-26
Identities = 64/130 (49%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
+A P V I L +D +F + DTD S AN++RRV I+EVPT+AID ++IE NSSVLNDE
Sbjct: 3 FANQPTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F++HR+GLIPLT++ + +++SRDC D C+ CSV F+L VKC + T VT D
Sbjct: 63 FLSHRIGLIPLTSDDVVDKIQYSRDCMC---DDFCQDCSVEFYLDVKCTGEGTRQVTTRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISMNPKVVP 129
[31][TOP]
>UniRef100_UPI00003AA556 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
RepID=UPI00003AA556
Length = 275
Score = 122 bits (305), Expect = 2e-26
Identities = 66/130 (50%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + M++SRDC D C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L ++ V P
Sbjct: 120 LISNNPRVIP 129
[32][TOP]
>UniRef100_B5FZ64 Putative DNA directed RNA polymerase II polypeptide C n=1
Tax=Taeniopygia guttata RepID=B5FZ64_TAEGU
Length = 275
Score = 122 bits (305), Expect = 2e-26
Identities = 66/130 (50%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + M++SRDC D C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L ++ V P
Sbjct: 120 LISNNPRVIP 129
[33][TOP]
>UniRef100_Q9P5U3 Probable DNA-directed RNA polymerase II chain RPB3 n=1
Tax=Neurospora crassa RepID=Q9P5U3_NEUCR
Length = 337
Score = 122 bits (305), Expect = 2e-26
Identities = 65/116 (56%), Positives = 77/116 (66%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P VKI + +FEL +T+ S AN+LRRVM++E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL E + +SRDCD D CE CSV +L KC D + V DL
Sbjct: 76 RLGLIPLNAEGIEQLLYSRDCDC---DEYCEHCSVTLNLHAKCTGDDIMQVCARDL 128
[34][TOP]
>UniRef100_UPI000001AB34 UPI000001AB34 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI000001AB34
Length = 275
Score = 121 bits (304), Expect = 2e-26
Identities = 63/130 (48%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P VKI L D+ +F + +TD ++AN++RRV +SEVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPLT++ + +++SRDC D C CSV L V+C D T VT D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTC---DDFCSECSVELTLDVRCTEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L ++ V P
Sbjct: 120 LLSNNPRVIP 129
[35][TOP]
>UniRef100_Q6P7Y7 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Xenopus
(Silurana) tropicalis RepID=Q6P7Y7_XENTR
Length = 275
Score = 121 bits (304), Expect = 2e-26
Identities = 66/130 (50%), Positives = 88/130 (67%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIPLT++ + +++SRDC D C CSV F L V+C D T VT D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L ++ V P
Sbjct: 120 LVSNNLRVIP 129
[36][TOP]
>UniRef100_Q6IRR3 MGC81245 protein n=1 Tax=Xenopus laevis RepID=Q6IRR3_XENLA
Length = 275
Score = 121 bits (303), Expect = 3e-26
Identities = 65/130 (50%), Positives = 88/130 (67%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V++ L D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIPLT++ + +++SRDC D C CSV F L V+C D T VT D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTC---DEFCPECSVEFTLDVRCTEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L ++ V P
Sbjct: 120 LVSNNLRVIP 129
[37][TOP]
>UniRef100_Q4SK90 Chromosome 13 SCAF14566, whole genome shotgun sequence. (Fragment)
n=1 Tax=Tetraodon nigroviridis RepID=Q4SK90_TETNG
Length = 275
Score = 121 bits (303), Expect = 3e-26
Identities = 63/130 (48%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P VKI L D+ +F + +TD ++AN++RRV +SEVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPLT++ + +++SRDC D C CSV L V+C D T VT D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L ++ V P
Sbjct: 120 LLSNNPRVIP 129
[38][TOP]
>UniRef100_Q1HQ43 DNA-directed RNA polymerase II polypeptide n=1 Tax=Bombyx mori
RepID=Q1HQ43_BOMMO
Length = 275
Score = 120 bits (302), Expect = 4e-26
Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L D+ +F + DT+ S+AN++RRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + +R+SRDC D C CSV F L VKC + T VT D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFTLDVKCTDEQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L SD V P
Sbjct: 120 LKSSDPRVVP 129
[39][TOP]
>UniRef100_C4WTK3 ACYPI001769 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WTK3_ACYPI
Length = 273
Score = 120 bits (302), Expect = 4e-26
Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L D +F++ DTD S+AN+LRRV I+E PT+AID V+++ NS+VL+DE
Sbjct: 3 YANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIA R+GLIPLT++ + +++SRDC D C CSV F+L VKC + T VT D
Sbjct: 63 FIASRIGLIPLTSDEIVDRLQYSRDCTCSD---FCHDCSVEFNLHVKCSEEMTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L ++ V P
Sbjct: 120 LVSNNPRVVP 129
[40][TOP]
>UniRef100_Q29K78 GA20659 n=2 Tax=pseudoobscura subgroup RepID=Q29K78_DROPS
Length = 275
Score = 120 bits (302), Expect = 4e-26
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + ++++RDC D C CSV F L VKC + T VT D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LKTSNPKVLP 129
[41][TOP]
>UniRef100_O97183 RNA polymerase II 33kD subunit, isoform A n=1 Tax=Drosophila
melanogaster RepID=O97183_DROME
Length = 275
Score = 120 bits (301), Expect = 5e-26
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + ++++RDC D C CSV F L VKC + T VT D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LKSSNAKVLP 129
[42][TOP]
>UniRef100_B4Q573 GD23930 n=1 Tax=Drosophila simulans RepID=B4Q573_DROSI
Length = 275
Score = 120 bits (301), Expect = 5e-26
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + ++++RDC D C CSV F L VKC + T VT D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LKSSNAKVLP 129
[43][TOP]
>UniRef100_B4P3R0 GE18688 n=1 Tax=Drosophila yakuba RepID=B4P3R0_DROYA
Length = 275
Score = 120 bits (301), Expect = 5e-26
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + ++++RDC D C CSV F L VKC + T VT D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LKSSNAKVLP 129
[44][TOP]
>UniRef100_B4HXA7 GM15286 n=1 Tax=Drosophila sechellia RepID=B4HXA7_DROSE
Length = 275
Score = 120 bits (301), Expect = 5e-26
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + ++++RDC D C CSV F L VKC + T VT D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LKSSNAKVLP 129
[45][TOP]
>UniRef100_C1BL52 DNA-directed RNA polymerase II 33 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BL52_OSMMO
Length = 275
Score = 120 bits (300), Expect = 6e-26
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P VKI L D+ +F + +TD ++AN++RRV +SEV TIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIPLT++ + M++SRDC D C CSV L V+C D T VT D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L ++ V P
Sbjct: 120 LLSNNPRVIP 129
[46][TOP]
>UniRef100_B4JCX9 GH11119 n=3 Tax=Drosophila RepID=B4JCX9_DROGR
Length = 275
Score = 120 bits (300), Expect = 6e-26
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + ++++RDC D C CSV F L VKC + T VT D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LKSSNAKVLP 129
[47][TOP]
>UniRef100_B4MVQ9 GK15011 n=1 Tax=Drosophila willistoni RepID=B4MVQ9_DROWI
Length = 275
Score = 119 bits (299), Expect = 8e-26
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + ++++RDC D C CSV F L VKC + T VT D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LKSSNAKVLP 129
[48][TOP]
>UniRef100_UPI0000123F31 Hypothetical protein CBG12350 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI0000123F31
Length = 399
Score = 119 bits (298), Expect = 1e-25
Identities = 60/121 (49%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P +++ L +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 236 FIAHRLGLIP-LTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIP L+ M+++R+C+ + C+ CS+ F L+ KC + TL VT D
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTRECECAE---FCDECSIPFILQTKCTDEATLAVTTAD 119
Query: 413 L 415
L
Sbjct: 120 L 120
[49][TOP]
>UniRef100_C1BXW0 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Esox lucius
RepID=C1BXW0_ESOLU
Length = 275
Score = 119 bits (297), Expect = 1e-25
Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P VKI L D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIPLT++ + M++SRDC D C CSV L V+C D T VT D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LLSNHPRVIP 129
[50][TOP]
>UniRef100_B5XBM8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5XBM8_SALSA
Length = 275
Score = 119 bits (297), Expect = 1e-25
Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P VKI L D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIPLT++ + M++SRDC D C CSV L V+C D T VT D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LLSNHPRVIP 129
[51][TOP]
>UniRef100_Q16XU4 DNA-directed RNA polymerase II subunit n=1 Tax=Aedes aegypti
RepID=Q16XU4_AEDAE
Length = 275
Score = 119 bits (297), Expect = 1e-25
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L D+ +F + DTD S+ N+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + M++SRDC D C CSV F L VKC + T VT D
Sbjct: 63 FLAHRVGLIPLISDEVVERMQYSRDCTCLD---FCTECSVEFTLDVKCNDEHTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L SD V P
Sbjct: 120 LKSSDPRVLP 129
[52][TOP]
>UniRef100_B3RV95 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3RV95_TRIAD
Length = 274
Score = 119 bits (297), Expect = 1e-25
Identities = 65/130 (50%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA PRV I L ++ +F L +TD S+AN+LRR+ I+ VPT+AID V+ N+SVL+DE
Sbjct: 3 YASQPRVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT + + +++SRDC+ + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTCDEVIDRLQYSRDCNCVE---HCPECSVEFTLDVRCNDDQTRHVTTRD 119
Query: 413 LYCSDHXVCP 442
L SD V P
Sbjct: 120 LISSDSRVVP 129
[53][TOP]
>UniRef100_Q2GNN7 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2GNN7_CHAGB
Length = 338
Score = 119 bits (297), Expect = 1e-25
Identities = 64/116 (55%), Positives = 74/116 (63%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P VKI +FEL + D + AN+LRRVM+ E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAH 75
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL + + F+RDCD DG CE CSV L KC D + V DL
Sbjct: 76 RLGLIPLNADGVEGLLFARDCDC---DGCCEHCSVRLTLHAKCTGDENMHVFARDL 128
[54][TOP]
>UniRef100_Q3T0Q3 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Bos taurus
RepID=RPB3_BOVIN
Length = 275
Score = 119 bits (297), Expect = 1e-25
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[55][TOP]
>UniRef100_UPI00005EAD58 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C, 33kDa n=1 Tax=Monodelphis domestica
RepID=UPI00005EAD58
Length = 275
Score = 118 bits (296), Expect = 2e-25
Identities = 64/130 (49%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNTPRVIP 129
[56][TOP]
>UniRef100_Q7Q2H6 AGAP010321-PA n=1 Tax=Anopheles gambiae RepID=Q7Q2H6_ANOGA
Length = 273
Score = 118 bits (296), Expect = 2e-25
Identities = 64/130 (49%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L D+ +F + DT+ S+AN+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+GLIPL ++ + M++SRDC D C CSV F L VKC + T VT D
Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLD---FCNECSVEFTLDVKCNEEHTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L SD V P
Sbjct: 120 LKSSDPRVLP 129
[57][TOP]
>UniRef100_Q93338 Protein C36B1.3, partially confirmed by transcript evidence n=1
Tax=Caenorhabditis elegans RepID=Q93338_CAEEL
Length = 282
Score = 118 bits (295), Expect = 2e-25
Identities = 59/121 (48%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P +++ L +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 236 FIAHRLGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIP ++ M+++RDC+ + C+ CS+ F L++KC + TL VT
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAE---FCDECSIPFILQMKCKDEATLAVTTEH 119
Query: 413 L 415
L
Sbjct: 120 L 120
[58][TOP]
>UniRef100_UPI0000DC0B4D polymerase II polypeptide C n=1 Tax=Rattus norvegicus
RepID=UPI0000DC0B4D
Length = 330
Score = 117 bits (293), Expect = 4e-25
Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[59][TOP]
>UniRef100_UPI00016D3816 polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Mus
musculus RepID=UPI00016D3816
Length = 302
Score = 117 bits (293), Expect = 4e-25
Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[60][TOP]
>UniRef100_B5X5T8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5X5T8_SALSA
Length = 275
Score = 117 bits (293), Expect = 4e-25
Identities = 63/130 (48%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P VKI L D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIPLT++ + M++SRDC D C CSV L +C D T VT D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDARCTEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LLSNHPRVIP 129
[61][TOP]
>UniRef100_Q9DB22 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q9DB22_MOUSE
Length = 275
Score = 117 bits (293), Expect = 4e-25
Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[62][TOP]
>UniRef100_Q99M46 Polymerase (RNA) II (DNA directed) polypeptide C n=2 Tax=Murinae
RepID=Q99M46_MOUSE
Length = 275
Score = 117 bits (293), Expect = 4e-25
Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[63][TOP]
>UniRef100_Q3UUX3 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q3UUX3_MOUSE
Length = 332
Score = 117 bits (293), Expect = 4e-25
Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[64][TOP]
>UniRef100_UPI000051A16D PREDICTED: similar to RNA polymerase II 33kD subunit CG7885-PA,
isoform A n=1 Tax=Apis mellifera RepID=UPI000051A16D
Length = 276
Score = 117 bits (292), Expect = 5e-25
Identities = 59/130 (45%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L ++ +F++ DT+ S+AN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+G+IPL ++ + ++++RDC D C CSV F L VKC D T VT D
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMD---FCPECSVEFTLDVKCTEDQTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
SD V P
Sbjct: 120 FKSSDPRVLP 129
[65][TOP]
>UniRef100_UPI0000D9F160 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 1 n=1 Tax=Macaca mulatta RepID=UPI0000D9F160
Length = 257
Score = 116 bits (291), Expect = 7e-25
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPL ++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[66][TOP]
>UniRef100_B7Z6D1 cDNA FLJ57430, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z6D1_HUMAN
Length = 424
Score = 116 bits (291), Expect = 7e-25
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPL ++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[67][TOP]
>UniRef100_P19387 DNA-directed RNA polymerase II subunit RPB3 n=2 Tax=Homo sapiens
RepID=RPB3_HUMAN
Length = 275
Score = 116 bits (291), Expect = 7e-25
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPL ++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[68][TOP]
>UniRef100_P97760 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Mus musculus
RepID=RPB3_MOUSE
Length = 275
Score = 116 bits (290), Expect = 9e-25
Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPLT++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[69][TOP]
>UniRef100_UPI00015B59AE PREDICTED: similar to DNA-directed RNA polymerase II polypeptide
n=1 Tax=Nasonia vitripennis RepID=UPI00015B59AE
Length = 276
Score = 115 bits (289), Expect = 1e-24
Identities = 59/130 (45%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V I L ++ +F++ DT+ S+AN++RRV I+E PT+AID V+IE NS+VL+DE
Sbjct: 3 YANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
F+AHR+G+IPL ++ + ++++RDC D C C V F L VKC + T VT D
Sbjct: 63 FLAHRIGMIPLISDEVVDRIQYTRDCQCMD---FCPECCVEFTLDVKCSDETTRHVTTAD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LKSSEQRVVP 129
[70][TOP]
>UniRef100_Q4R533 Brain cDNA, clone: QccE-21516, similar to human polymerase (RNA) II
(DNA directed) polypeptide C, 33kDa(POLR2C), transcript
variant gamma, n=1 Tax=Macaca fascicularis
RepID=Q4R533_MACFA
Length = 251
Score = 115 bits (289), Expect = 1e-24
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPL ++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LIPNSPRVIP 129
[71][TOP]
>UniRef100_B7Z377 cDNA FLJ57937, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z377_HUMAN
Length = 155
Score = 115 bits (289), Expect = 1e-24
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHRLGLIPL ++ + +++SRDC + C CSV F L V+C D T VT D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTF---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 413 LYCSDHXVCP 442
L + V P
Sbjct: 120 LISNSPRVIP 129
[72][TOP]
>UniRef100_A3GF98 45 kDa subunit of RNA polymerase II n=1 Tax=Pichia stipitis
RepID=A3GF98_PICST
Length = 315
Score = 115 bits (288), Expect = 2e-24
Identities = 60/116 (51%), Positives = 78/116 (67%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P V I + D F LRD D ++AN++RRVM++EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIRESERDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGL+PL +E + +SRDC D C CSV L KC TD T++V DL
Sbjct: 69 RLGLVPLVSEGIENLTYSRDCTC---DNYCPKCSVRLELTAKCDTDSTMNVYATDL 121
[73][TOP]
>UniRef100_A8XFM5 C. briggsae CBR-RPB-3 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XFM5_CAEBR
Length = 280
Score = 114 bits (286), Expect = 3e-24
Identities = 60/121 (49%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P +++ L +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 236 FIAHRLGLIP-LTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIAHR+GLIP L+ M+++R C+ C+ CS+ F L+ KC + TL VT D
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTR----CECAEFCDECSIPFILQTKCTDEATLAVTTAD 118
Query: 413 L 415
L
Sbjct: 119 L 119
[74][TOP]
>UniRef100_B2B158 Predicted CDS Pa_3_9390 n=1 Tax=Podospora anserina
RepID=B2B158_PODAN
Length = 334
Score = 114 bits (286), Expect = 3e-24
Identities = 63/116 (54%), Positives = 75/116 (64%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P VKI +FEL++ D S AN+LRRVM++E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAH 75
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL E + +SRDCD + CE CSV L KC + V+ DL
Sbjct: 76 RLGLIPLNAEGVEHLLYSRDCDC---EEYCENCSVKLTLHAKCTGYENMSVSARDL 128
[75][TOP]
>UniRef100_Q6BUW0 DEHA2C07546p n=1 Tax=Debaryomyces hansenii RepID=Q6BUW0_DEBHA
Length = 311
Score = 114 bits (284), Expect = 4e-24
Identities = 61/116 (52%), Positives = 76/116 (65%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
PRV I + F L+D D ++AN++RR M++EVPT+AIDLVEIEVN+SVL DEFI+H
Sbjct: 11 PRVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISH 70
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL +E + +SRDC D C CSV L KC TD T+ V DL
Sbjct: 71 RLGLIPLNSEGIDNLSYSRDCTC---DQYCANCSVKLELTAKCDTDSTMSVYSSDL 123
[76][TOP]
>UniRef100_C4XY52 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY52_CLAL4
Length = 307
Score = 113 bits (283), Expect = 6e-24
Identities = 64/125 (51%), Positives = 79/125 (63%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
ME S PRV I + D F LR D S+AN+LRR M+SEVPT+AIDLVEI+VN+S
Sbjct: 1 MEVDSAESGPRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VL DE ++HRLGLIPL +E + +SRDC D C CSV L KC +D T++V
Sbjct: 61 VLADELLSHRLGLIPLNSEGIENLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMNV 117
Query: 401 TXXDL 415
DL
Sbjct: 118 YSSDL 122
[77][TOP]
>UniRef100_UPI000023DAEE hypothetical protein FG01447.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023DAEE
Length = 337
Score = 112 bits (281), Expect = 1e-23
Identities = 63/116 (54%), Positives = 75/116 (64%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+VKI FEL T+ S ANA+RRV+ +EVPTIAIDLVEIE NSSVL DEFIAH
Sbjct: 15 PQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAH 74
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + +SRDCD + CE CSV L KC +D + V DL
Sbjct: 75 RLGLIPLDSKGVAELNYSRDCDC---EQYCEQCSVTLTLHAKCTSDEIMKVYARDL 127
[78][TOP]
>UniRef100_C7YWI1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YWI1_NECH7
Length = 335
Score = 112 bits (281), Expect = 1e-23
Identities = 63/116 (54%), Positives = 76/116 (65%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+VKI FEL T+ + ANALRRV+ +EVPTIAIDLVEIE+NSSVL DEFIAH
Sbjct: 15 PQVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIAH 74
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + SRDCD + CE CSV +L KC +D + V DL
Sbjct: 75 RLGLIPLDSKGVGELNNSRDCDC---EQYCEQCSVTLNLHAKCTSDEIMKVYARDL 127
[79][TOP]
>UniRef100_A7EJ53 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7EJ53_SCLS1
Length = 335
Score = 112 bits (280), Expect = 1e-23
Identities = 60/116 (51%), Positives = 74/116 (63%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+VKI FEL + D S AN+LRR ++SEVPTIAID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + ++RDCD DG CE CSV L +C D + V DL
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---DGNCELCSVTLTLHARCTGDEIMKVYARDL 127
[80][TOP]
>UniRef100_A5E4Q9 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5E4Q9_LODEL
Length = 336
Score = 111 bits (277), Expect = 3e-23
Identities = 60/116 (51%), Positives = 78/116 (67%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P V + + D F L+ D S+AN+LRR M++EVPT+AIDLVEI+VN+SVL DEF+AH
Sbjct: 7 PSVIMRDAEKDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + +SRDC AC D C CSV L KC +D T++V DL
Sbjct: 67 RLGLIPLDSQGIENLLYSRDC-AC--DNYCSKCSVTLELTAKCDSDSTMNVCASDL 119
[81][TOP]
>UniRef100_A6S2E5 RNA polymerase II subunit 3 n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6S2E5_BOTFB
Length = 336
Score = 110 bits (276), Expect = 4e-23
Identities = 59/116 (50%), Positives = 74/116 (63%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+VKI FEL + D S AN+LRR ++SEVPTIAID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + ++RDCD +G CE CSV L +C D + V DL
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---EGNCELCSVTLTLHARCTGDEIMKVYARDL 127
[82][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 110 bits (275), Expect = 5e-23
Identities = 64/124 (51%), Positives = 77/124 (62%)
Frame = +2
Query: 44 EGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 223
+G R P + + + +D +F L TD SIANALRRV+I+EVPTIAIDLVE+ NSS
Sbjct: 5 DGDPRQRRPNIVVQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSC 64
Query: 224 LNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVT 403
L DEFIAHRLGLIPL + +A M F D D V LRVKC++D T DVT
Sbjct: 65 LCDEFIAHRLGLIPLVSHKAADMEFPYDYAGDDE----TVTDVPIELRVKCVSDQTEDVT 120
Query: 404 XXDL 415
DL
Sbjct: 121 SNDL 124
[83][TOP]
>UniRef100_Q5A462 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
albicans RepID=Q5A462_CANAL
Length = 318
Score = 110 bits (274), Expect = 6e-23
Identities = 57/121 (47%), Positives = 77/121 (63%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P V I + D F L++ D ++AN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSD 427
RLGLIPL +E + +SRDC D C CSV L C T+ T++V DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLIANCATESTMNVYASDLQKMS 125
Query: 428 H 430
H
Sbjct: 126 H 126
[84][TOP]
>UniRef100_B9WGL5 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Candida
dubliniensis CD36 RepID=B9WGL5_CANDC
Length = 313
Score = 110 bits (274), Expect = 6e-23
Identities = 57/121 (47%), Positives = 77/121 (63%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P V I + D F L++ D ++AN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSD 427
RLGLIPL +E + +SRDC D C CSV L C T+ T++V DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLVANCATESTMNVYASDLQKMS 125
Query: 428 H 430
H
Sbjct: 126 H 126
[85][TOP]
>UniRef100_A5DQ44 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DQ44_PICGU
Length = 305
Score = 110 bits (274), Expect = 6e-23
Identities = 58/115 (50%), Positives = 76/115 (66%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV I + D F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
LG+IPL +E + +SRDC D C CSV L KC +D T+ V DL
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMSVYATDL 120
[86][TOP]
>UniRef100_B0D0L9 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D0L9_LACBS
Length = 304
Score = 109 bits (273), Expect = 8e-23
Identities = 56/117 (47%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P V+I LK D F L + D + AN+LRRVM++++PT+AID+VEIE+N++VL DEFIAH
Sbjct: 9 PTVRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAH 68
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLG++PL + A+R +RDC G C FC++ L V C D T++VT L
Sbjct: 69 RLGMVPLLSSNCDEAIRSTRDCTCLAG---CSFCAIMLVLNVGCHDDTTMEVTSAHL 122
[87][TOP]
>UniRef100_C5MDV1 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MDV1_CANTT
Length = 327
Score = 109 bits (272), Expect = 1e-22
Identities = 60/134 (44%), Positives = 81/134 (60%)
Frame = +2
Query: 29 EKETMEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIE 208
++E EG P V I + D F LR+ D S+AN++RR M++EVPT++IDLVEIE
Sbjct: 2 DREPKEG------PGVTIRTAEKDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIE 55
Query: 209 VNSSVLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDX 388
N+SVL DEF++HRLGLIPL +E + +SRDC D C CSV L C +
Sbjct: 56 KNTSVLADEFLSHRLGLIPLVSEGIKDLTYSRDCTC---DNYCTKCSVTLQLLASCTAET 112
Query: 389 TLDVTXXDLYCSDH 430
T++V DL + H
Sbjct: 113 TMNVYASDLLKTTH 126
[88][TOP]
>UniRef100_C4QNG7 DNA-directed rna polymerase II subunit, putative n=1
Tax=Schistosoma mansoni RepID=C4QNG7_SCHMA
Length = 266
Score = 108 bits (270), Expect = 2e-22
Identities = 61/130 (46%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V + ++ +F L +TD S+ANA+RRV I+EVPT+AID V+IE N+++LNDE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
FIA R+GLIPLT + + M + R+C + CE CSV L V C TD VT D
Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCRE---FCEQCSVELTLDVCCTTDAPRHVTGAD 119
Query: 413 LYCSDHXVCP 442
L S+ V P
Sbjct: 120 LISSNRDVQP 129
[89][TOP]
>UniRef100_B8PBS2 Predicted protein (Fragment) n=1 Tax=Postia placenta Mad-698-R
RepID=B8PBS2_POSPM
Length = 265
Score = 108 bits (269), Expect = 2e-22
Identities = 56/121 (46%), Positives = 78/121 (64%), Gaps = 1/121 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P V+I L+ D F + + D ++AN+LRRVM++++PT+AID+VEIE N++VL DEFIAH
Sbjct: 4 PIVRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAH 63
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCS 424
RLG+IPL + MR++RDC C+FC+V L V C +DVT L S
Sbjct: 64 RLGMIPLVSSNCDEGMRYTRDCTCL---SWCQFCAVELTLHVACHDGVAMDVTSMHLDVS 120
Query: 425 D 427
D
Sbjct: 121 D 121
[90][TOP]
>UniRef100_UPI000151B3AC conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151B3AC
Length = 305
Score = 107 bits (268), Expect = 3e-22
Identities = 57/115 (49%), Positives = 75/115 (65%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV I + D F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
LG+IPL +E + +SRDC D C C V L KC +D T+ V DL
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCLVKLELTAKCDSDSTMSVYATDL 120
[91][TOP]
>UniRef100_Q4P8L3 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P8L3_USTMA
Length = 329
Score = 106 bits (264), Expect = 9e-22
Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P++ + L D A F L + D S AN+LRR+MI+++PT+AID+VEI N++VL DE +AH
Sbjct: 12 PKITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAH 71
Query: 248 RLGLIP-LTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCS 424
RLG++P L+ + A A+ RDC DG C+ CSV LR +C T L+VT DL S
Sbjct: 72 RLGMVPLLSMDCAKALVDHRDCACEDG---CDRCSVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 425 D 427
D
Sbjct: 129 D 129
[92][TOP]
>UniRef100_B6K2N9 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6K2N9_SCHJY
Length = 308
Score = 105 bits (263), Expect = 1e-21
Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 5/121 (4%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P V I + + F L +TD S+AN+LRRV++ E+PT+AIDLVEI VN+SV+ DEF+AH
Sbjct: 5 PNVTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAH 64
Query: 248 RLGLIPLTTER-----AMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
RLG+IPL + + + ++R+CD D C CSV L KC D T++V D
Sbjct: 65 RLGMIPLNSNNIDEPPPVGLEYTRNCDC---DQYCNKCSVELSLNAKCTGDGTMEVYARD 121
Query: 413 L 415
L
Sbjct: 122 L 122
[93][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 105 bits (262), Expect = 2e-21
Identities = 62/128 (48%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
Frame = +2
Query: 62 RMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 241
R P + + L + RF L TD S+ANALRRV+I+EVPT+AIDLV++ N+S L DEFI
Sbjct: 10 RSPSIVVQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEFI 69
Query: 242 AHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVK-CMTDXTLDVTXXDLY 418
AHRLGLIPL +E+A+ M F D D V F L C + T+DVT DL
Sbjct: 70 AHRLGLIPLLSEKAVEMEFPYDYAGDDE----SVTDVHFELNTGICASAETVDVTSNDLV 125
Query: 419 CSDHXVCP 442
C D V P
Sbjct: 126 CYDPRVAP 133
[94][TOP]
>UniRef100_C4R7L2 RNA polymerase II third largest subunit B44, part of central core
n=1 Tax=Pichia pastoris GS115 RepID=C4R7L2_PICPG
Length = 304
Score = 105 bits (262), Expect = 2e-21
Identities = 53/105 (50%), Positives = 73/105 (69%)
Frame = +2
Query: 59 ARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 238
++ P+V I+ +DD L D + S+AN+LRR M++EVPT+AIDLVEI++N+SVL DEF
Sbjct: 2 SKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEF 61
Query: 239 IAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVK 373
I+HRLGLIPL +E M++SRDC D C+ CSV L +
Sbjct: 62 ISHRLGLIPLVSEDVEEMKYSRDCTCED---YCDECSVVLELSAR 103
[95][TOP]
>UniRef100_C4V9J5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4V9J5_NOSCE
Length = 233
Score = 105 bits (261), Expect = 2e-21
Identities = 57/114 (50%), Positives = 73/114 (64%)
Frame = +2
Query: 95 DDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTT 274
D++ +F LRDT S ANALRR++ISEVPT+ IDLVEIE+N++ L DE I+HRLGL+PL T
Sbjct: 10 DNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHRLGLVPLYT 69
Query: 275 ERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDHXV 436
++ + R D C D C+ CSV L V TD + VT DL D V
Sbjct: 70 KKDLVFR-----DDCACDDICDKCSVSLTLNVSNNTDMPMVVTCKDLKSQDDVV 118
[96][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
Length = 275
Score = 103 bits (256), Expect = 8e-21
Identities = 56/119 (47%), Positives = 75/119 (63%)
Frame = +2
Query: 59 ARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 238
+R P + + L+ D FEL++TD S ANALRR M++EVPTIAIDLVE+E N++VLNDEF
Sbjct: 10 SRKPTISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEF 69
Query: 239 IAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
+AHRLGLIPL + A+ + + G + F L V C + +DVT DL
Sbjct: 70 LAHRLGLIPLVSRNAVYWK-----RPFEWSGDNDIIETAFSLDVMCEQEGVMDVTSNDL 123
[97][TOP]
>UniRef100_A9URC4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9URC4_MONBE
Length = 276
Score = 103 bits (256), Expect = 8e-21
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
PR+++ D F L+ D ++AN+ RRVMI+EVPT+AID V I N+SVL+DEF+AH
Sbjct: 11 PRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDEFLAH 70
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPLT+E A + RDC C + C+ C V L V+ T+ VT DL
Sbjct: 71 RLGLIPLTSEAADKFYYPRDCTLC--EMGCDHCQVMLTLDVEGHTEEPTHVTTDDL 124
[98][TOP]
>UniRef100_C1H5R6 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H5R6_PARBA
Length = 352
Score = 102 bits (255), Expect = 1e-20
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 248 RLGLIPLTTERAMA-MRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ A M +SRDCD +G C C V L V+C + + V DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCIVMLSLNVRCTGEDVMKVYARDL 127
[99][TOP]
>UniRef100_C1GI99 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GI99_PARBD
Length = 352
Score = 102 bits (255), Expect = 1e-20
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 248 RLGLIPLTTERAMA-MRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ A M +SRDCD +G C C V L V+C + + V DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDL 127
[100][TOP]
>UniRef100_C0SC71 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SC71_PARBP
Length = 283
Score = 102 bits (255), Expect = 1e-20
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 248 RLGLIPLTTERAMA-MRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ A M +SRDCD +G C C V L V+C + + V DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDL 127
[101][TOP]
>UniRef100_A8N5W0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N5W0_COPC7
Length = 366
Score = 102 bits (254), Expect = 1e-20
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P V++ +K D F L + D + AN+ RRV+++++PT+AIDLVE E N+SVL DE+IAH
Sbjct: 8 PIVRVREVKKDKVNFVLENVDLAFANSFRRVVMADIPTVAIDLVEFEANTSVLPDEYIAH 67
Query: 248 RLGLIPL-TTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLG IPL +T A+R++RDC C +C+V L V C D T++VT L
Sbjct: 68 RLGQIPLISTNCDEAIRYTRDCTCL---SQCSYCAVQLRLDVACNDDTTMEVTSNHL 121
[102][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G229_PHATR
Length = 320
Score = 101 bits (252), Expect = 2e-20
Identities = 62/144 (43%), Positives = 83/144 (57%), Gaps = 12/144 (8%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
Y R PRV+IL ++ +F L ++D S+AN LRR+MI+EVPT+AIDLVE NS+VLNDE
Sbjct: 3 YQRFPRVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDE 62
Query: 236 FIAHRLGLIPLTTERAMAMRFSRDCDA------CDGDGXCEFCSVXFHLRVKCMTD---- 385
+IAHR+GLIP+ + A +++ S DA C C CSV F L +
Sbjct: 63 YIAHRMGLIPVRYQPAESLKGSDCSDAFLPHRECVCYEHCMRCSVEFELDITYKVTGEED 122
Query: 386 --XTLDVTXXDLYCSDHXVCPC*F 451
L VT DL ++ V P F
Sbjct: 123 VLAPLTVTSKDLVSNNELVQPAHF 146
[103][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
Length = 348
Score = 101 bits (251), Expect = 3e-20
Identities = 52/119 (43%), Positives = 73/119 (61%)
Frame = +2
Query: 62 RMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 241
R P ++I + +F L +TD S+ANALRR+M++E+PT+AIDLV I N+SVL+DEFI
Sbjct: 7 RTPHIEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFI 66
Query: 242 AHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLY 418
HRLGL+P+ + + F D C C CSV + L +KC +VT D+Y
Sbjct: 67 VHRLGLLPIDSRQIRDFNFK---DRCGCQERCNKCSVDYTLDLKCEGPTVRNVTHLDIY 122
[104][TOP]
>UniRef100_C4JV60 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JV60_UNCRE
Length = 345
Score = 101 bits (251), Expect = 3e-20
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + ++ F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVRDVETHRVDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + M ++RDCD +G C C + L KC + + V DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARDCDC---EGGCSRCIITLQLHAKCTGEGVMVVYARDL 126
[105][TOP]
>UniRef100_UPI0000E48A01 PREDICTED: hypothetical protein isoform 1, partial n=1
Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A01
Length = 246
Score = 100 bits (250), Expect = 4e-20
Identities = 53/103 (51%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Frame = +2
Query: 137 IANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERAM-AMRFSRDCD 313
+AN++RR +++EVPTIAID VEI+ NSSVL+DEFI+HR+GLIPLT++ + + F+RDC
Sbjct: 1 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDCG 60
Query: 314 ACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDHXVCP 442
+ C CSV L VKC D T VT DL S+ V P
Sbjct: 61 C---EEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVP 100
[106][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 100 bits (250), Expect = 4e-20
Identities = 58/131 (44%), Positives = 77/131 (58%), Gaps = 5/131 (3%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
V + L+D F L+ D S+ANALRRVMI++VPT+AIDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHRL 70
Query: 254 GLIPLTTERAMAM-----RFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLY 418
GLIPL++++ + D A D V L V+C+T+ +DVT D+
Sbjct: 71 GLIPLSSKKVSELFKPYEYMGEDDSATD---------VHLELNVRCLTEQAMDVTSEDMV 121
Query: 419 CSDHXVCPC*F 451
D V P F
Sbjct: 122 SYDERVKPITF 132
[107][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 100 bits (249), Expect = 5e-20
Identities = 58/130 (44%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
V + L+D+ F+L+ D S+ANALRR+MI++VPT++IDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRL 70
Query: 254 GLIPLTTERAMAM----RFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYC 421
GLIPL + +A + ++ D D V L V+C +D T DVT DL
Sbjct: 71 GLIPLDSTKASELVKPYEYTGDDDTA--------TDVHLELNVRCQSDQTRDVTSDDLIS 122
Query: 422 SDHXVCPC*F 451
D V P F
Sbjct: 123 HDERVKPVSF 132
[108][TOP]
>UniRef100_C5GT99 RNA polymerase II subunit 3 n=2 Tax=Ajellomyces dermatitidis
RepID=C5GT99_AJEDR
Length = 346
Score = 100 bits (248), Expect = 7e-20
Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F L D + AN+LRR +++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 248 RLGLIPLTTERAMA-MRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ A M +SRDCD +G C C V L+ +C + + V DL
Sbjct: 73 RLGLIPLNSKNCDADMYYSRDCDC---EGGCARCVVTLSLQARCTGEDIMKVYARDL 126
[109][TOP]
>UniRef100_C0NSH0 DNA-directed RNA polymerase II polypeptide n=1 Tax=Ajellomyces
capsulatus G186AR RepID=C0NSH0_AJECG
Length = 475
Score = 99.8 bits (247), Expect = 9e-20
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F L D + AN+LRR +++E+PT+AID+VEIE N+SVL DEFI+H
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72
Query: 248 RLGLIPLTTERAMA-MRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ A M +SRDCD +G C C V L+ +C + + V DL
Sbjct: 73 RLGLIPLNSKNCDADMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL 126
[110][TOP]
>UniRef100_A4R7L3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4R7L3_MAGGR
Length = 330
Score = 99.8 bits (247), Expect = 9e-20
Identities = 50/104 (48%), Positives = 69/104 (66%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
VKI FEL + D S+AN++RRVM++E+PT+AID EI+ N+SVL DEFIAHRL
Sbjct: 17 VKIFHADSVHVNFELSNVDLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRL 76
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTD 385
GL+PL+ A + ++RDCD + CE CSV + KC ++
Sbjct: 77 GLVPLSARGASELVYARDCDC---EQYCENCSVIITIHAKCESE 117
[111][TOP]
>UniRef100_A2QC01 Catalytic activity: N nucleoside triphosphate <=> N diphosphate +
(RNA)(N) n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QC01_ASPNC
Length = 338
Score = 99.8 bits (247), Expect = 9e-20
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F+L D + AN+LRRVM+SE+PT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCS 424
RLGLIPL ++ + ++RDC+ D C CSV L +C D + V DL S
Sbjct: 72 RLGLIPLISKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTGDDIMRVYARDLVVS 128
[112][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BWN8_THAPS
Length = 297
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/140 (45%), Positives = 79/140 (56%), Gaps = 10/140 (7%)
Frame = +2
Query: 62 RMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 241
R P+V+IL + +F L +TD S+AN LRR+MI+EVPT+AIDLVE NSSVLNDE+I
Sbjct: 2 RFPKVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYI 61
Query: 242 AHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHL----------RVKCMTDXT 391
AHRLGL+P+ R MA ++C D C C V F L R D
Sbjct: 62 AHRLGLVPI---RFMAEGSLKECVCYD---RCPRCCVEFELDVNFDKVNQTRPDTERDLA 115
Query: 392 LDVTXXDLYCSDHXVCPC*F 451
L VT DL ++ V P F
Sbjct: 116 LTVTSRDLISNNMLVSPAHF 135
[113][TOP]
>UniRef100_Q1DX59 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
RepID=Q1DX59_COCIM
Length = 345
Score = 99.0 bits (245), Expect = 1e-19
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + M ++R+CD +G C C + L KC + + V DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCVITLQLHAKCTGEGVMVVYARDL 126
[114][TOP]
>UniRef100_C5P0B5 DNA-directed RNA polymerase II 45 kDa polypeptide, putative n=1
Tax=Coccidioides posadasii C735 delta SOWgp
RepID=C5P0B5_COCP7
Length = 345
Score = 99.0 bits (245), Expect = 1e-19
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + M ++R+CD +G C C + L KC + + V DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCLITLQLHAKCTGEGVMVVYARDL 126
[115][TOP]
>UniRef100_B6QC29 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC29_PENMQ
Length = 352
Score = 98.6 bits (244), Expect = 2e-19
Identities = 54/118 (45%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SVL DEF+AH
Sbjct: 12 PQVTVRETEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAH 71
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKC-MTDXTLDVTXXDL 415
RLGLIPL ++ M ++RDC + C CSV L +C D + V DL
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL 126
[116][TOP]
>UniRef100_P16370 DNA-directed RNA polymerase II subunit RPB3 n=6 Tax=Saccharomyces
cerevisiae RepID=RPB3_YEAST
Length = 318
Score = 98.6 bits (244), Expect = 2e-19
Identities = 55/116 (47%), Positives = 74/116 (63%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+VKI D F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL + + +SRDC D C+ CSV L+ ++ T +V DL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDL 118
[117][TOP]
>UniRef100_P37382 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces pombe RepID=RPB3_SCHPO
Length = 297
Score = 98.6 bits (244), Expect = 2e-19
Identities = 50/124 (40%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+ I + + F L +T ++AN+LRRV+++E+PT+AIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 254 GLIPLTTER-----AMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLY 418
G+IPL + + + ++R+CD D C CSV L KC + T+++ DL
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123
Query: 419 CSDH 430
S +
Sbjct: 124 VSSN 127
[118][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
GT1 RepID=B9PNQ8_TOXGO
Length = 484
Score = 98.2 bits (243), Expect = 3e-19
Identities = 56/123 (45%), Positives = 74/123 (60%)
Frame = +2
Query: 47 GVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 226
G S A P + + + + +F L + D SIAN LRRVMISEVP++AIDLV + N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203
Query: 227 NDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTX 406
+DE+I+HRLGL+P+ + R DCD D C CSV + L V C D L VT
Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTH 259
Query: 407 XDL 415
D+
Sbjct: 260 RDI 262
[119][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
RepID=B6KGB1_TOXGO
Length = 484
Score = 98.2 bits (243), Expect = 3e-19
Identities = 56/123 (45%), Positives = 74/123 (60%)
Frame = +2
Query: 47 GVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 226
G S A P + + + + +F L + D SIAN LRRVMISEVP++AIDLV + N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203
Query: 227 NDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTX 406
+DE+I+HRLGL+P+ + R DCD D C CSV + L V C D L VT
Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTH 259
Query: 407 XDL 415
D+
Sbjct: 260 RDI 262
[120][TOP]
>UniRef100_Q6FPN4 Similar to uniprot|P16370 Saccharomyces cerevisiae YIL021w RPB3 n=1
Tax=Candida glabrata RepID=Q6FPN4_CANGA
Length = 312
Score = 98.2 bits (243), Expect = 3e-19
Identities = 54/116 (46%), Positives = 74/116 (63%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+VKI D F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEF+AH
Sbjct: 6 PQVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAH 65
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL + + +SRDC D C+ CSV L+ ++ T +V DL
Sbjct: 66 RLGLIPLQSTDIEQLEYSRDCFCED---HCDKCSVVLTLQAVGESESTTNVYAKDL 118
[121][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CSH3_CRYPV
Length = 355
Score = 97.8 bits (242), Expect = 3e-19
Identities = 52/118 (44%), Positives = 72/118 (61%)
Frame = +2
Query: 62 RMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 241
R P+ +I L + RF L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 242 AHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
HR+GLIPL + F D C+ C CSV + L V C T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDI 122
[122][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
RepID=Q5CNH1_CRYHO
Length = 355
Score = 97.8 bits (242), Expect = 3e-19
Identities = 52/118 (44%), Positives = 72/118 (61%)
Frame = +2
Query: 62 RMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 241
R P+ +I L + RF L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 242 AHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
HR+GLIPL + F D C+ C CSV + L V C T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDI 122
[123][TOP]
>UniRef100_Q6C2S4 YALI0F05566p n=1 Tax=Yarrowia lipolytica RepID=Q6C2S4_YARLI
Length = 314
Score = 97.8 bits (242), Expect = 3e-19
Identities = 50/94 (53%), Positives = 66/94 (70%)
Frame = +2
Query: 134 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERAMAMRFSRDCD 313
++AN+LRRVM++E+PT+AIDLVEI N+SVL DEFI+HRLGLIPL ++ + +SRDC
Sbjct: 21 TLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVNDLEYSRDC- 79
Query: 314 ACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
C D C+ CSV L C D T+D+ DL
Sbjct: 80 VC--DEYCDKCSVVLMLDATCTGDDTMDIYSRDL 111
[124][TOP]
>UniRef100_Q2UF63 RNA polymerase II n=1 Tax=Aspergillus oryzae RepID=Q2UF63_ASPOR
Length = 342
Score = 97.8 bits (242), Expect = 3e-19
Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F+L D + AN+LRR M++EVPTIAIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCS 424
RLGLIPL ++ + ++RDC+ D C CSV L +C D + V DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128
[125][TOP]
>UniRef100_Q0CYF6 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Aspergillus terreus NIH2624 RepID=Q0CYF6_ASPTN
Length = 331
Score = 97.8 bits (242), Expect = 3e-19
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F+L D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 13 PQVTVREAEPYRVDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAH 72
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + ++RDC+ D C CSV L +C D + V DL
Sbjct: 73 RLGLIPLNSKNCDQDLEYTRDCECED---HCARCSVTLQLHARCTGDDIMRVYARDL 126
[126][TOP]
>UniRef100_B8NGG7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8NGG7_ASPFN
Length = 338
Score = 97.8 bits (242), Expect = 3e-19
Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F+L D + AN+LRR M++EVPTIAIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCS 424
RLGLIPL ++ + ++RDC+ D C CSV L +C D + V DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128
[127][TOP]
>UniRef100_B8M3N2 RNA polymerase II subunit 3 n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8M3N2_TALSN
Length = 353
Score = 97.8 bits (242), Expect = 3e-19
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SV+ DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAH 71
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKC-MTDXTLDVTXXDL 415
RLGLIPL ++ M ++RDC + C CSV L +C D + V DL
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL 126
[128][TOP]
>UniRef100_C5FPK3 RNA polymerase II subunit 3 n=1 Tax=Microsporum canis CBS 113480
RepID=C5FPK3_NANOT
Length = 359
Score = 97.4 bits (241), Expect = 4e-19
Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = +2
Query: 110 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERA-M 286
F L D + AN+ RR +++E+PT+AID+VEIEVN+SVL DEFI+HRLGLIPL ++
Sbjct: 37 FRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDT 96
Query: 287 AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
M +SRDCD +G C+ C + L KC ++ + V DL
Sbjct: 97 DMLYSRDCDC---EGGCQRCVINLSLHAKCTSEEIMKVYARDL 136
[129][TOP]
>UniRef100_A6RAE4 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus
NAm1 RepID=A6RAE4_AJECN
Length = 576
Score = 97.4 bits (241), Expect = 4e-19
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = +2
Query: 110 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERAMA 289
F L D + AN+LRR +++E+PT+AID+VEIE N+SVL DEFI+HRLGLIPL ++ A
Sbjct: 50 FRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDA 109
Query: 290 -MRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
M +SRDCD +G C C V L+ +C + + V DL
Sbjct: 110 DMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL 149
[130][TOP]
>UniRef100_A9BL73 Rpb3 n=1 Tax=Cryptophyta RepID=A9BL73_9CRYP
Length = 307
Score = 97.1 bits (240), Expect = 6e-19
Identities = 49/101 (48%), Positives = 72/101 (71%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P ++IL L + ++ L++T+ SI N+LRRVMI+EVPT AIDL+ IE+NSSV++DEF++H
Sbjct: 4 PSLEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSH 63
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRV 370
RLGL+PL + A R++R+CD + C CS F L +
Sbjct: 64 RLGLLPLFSNFAHEFRYTRECDC---EQYCSKCSFKFSLDI 101
[131][TOP]
>UniRef100_B6QC30 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC30_PENMQ
Length = 370
Score = 97.1 bits (240), Expect = 6e-19
Identities = 52/104 (50%), Positives = 69/104 (66%), Gaps = 2/104 (1%)
Frame = +2
Query: 110 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERA-M 286
F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SVL DEF+AHRLGLIPL ++
Sbjct: 44 FKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDN 103
Query: 287 AMRFSRDCDACDGDGXCEFCSVXFHLRVKC-MTDXTLDVTXXDL 415
M ++RDC + C CSV L +C D + V DL
Sbjct: 104 DMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL 144
[132][TOP]
>UniRef100_B0XTA3 RNA polymerase II subunit 3 n=2 Tax=Aspergillus fumigatus
RepID=B0XTA3_ASPFC
Length = 392
Score = 97.1 bits (240), Expect = 6e-19
Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = +2
Query: 110 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERA-M 286
F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL ++
Sbjct: 82 FKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQ 141
Query: 287 AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCS 424
+ ++RDCD D C CSV L +C D + V DL S
Sbjct: 142 DVEYTRDCDCED---HCARCSVTLTLHARCTGDEIMPVYARDLVVS 184
[133][TOP]
>UniRef100_A1DHL4 RNA polymerase II subunit 3 n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1DHL4_NEOFI
Length = 336
Score = 97.1 bits (240), Expect = 6e-19
Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCS 424
RLGLIPL ++ + ++RDC+ D C CSV L +C D + V DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDEIMPVYARDLVVS 128
[134][TOP]
>UniRef100_A1C6Y7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus clavatus
RepID=A1C6Y7_ASPCL
Length = 333
Score = 97.1 bits (240), Expect = 6e-19
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYHVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAH 71
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + ++RDCD D C CSV L +C D + V DL
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCDCED---RCARCSVTLTLHARCTGDEIMPVYARDL 125
[135][TOP]
>UniRef100_B2W6Y7 DNA-directed RNA polymerase subunit D n=1 Tax=Pyrenophora
tritici-repentis Pt-1C-BFP RepID=B2W6Y7_PYRTR
Length = 334
Score = 96.7 bits (239), Expect = 7e-19
Identities = 49/114 (42%), Positives = 72/114 (63%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
V+ L A F +++ + AN+LRRVM+SE+PT+AID+VE+ N+SVL DEF+ HRL
Sbjct: 12 VRFLEANSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRL 71
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
GL+PL+++ + +SRDCD +G C+ C+V L KC + V DL
Sbjct: 72 GLVPLSSKGVDDLIYSRDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVYARDL 122
[136][TOP]
>UniRef100_Q8SRR5 DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN n=1 Tax=Encephalitozoon
cuniculi RepID=Q8SRR5_ENCCU
Length = 240
Score = 96.3 bits (238), Expect = 1e-18
Identities = 53/124 (42%), Positives = 73/124 (58%)
Frame = +2
Query: 65 MPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 244
M + + L + RF L +T ANALRR++ISEVPTIAID+VEIE N++VL DE +A
Sbjct: 1 MVALTVEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLA 60
Query: 245 HRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCS 424
HRLGLIP+ ++R + + + C G C CSV F + V D V+ D+ C
Sbjct: 61 HRLGLIPIYSKRELKYK-----EECSCSGFCSECSVVFEIDVVHTDDTLRTVSTRDIVCD 115
Query: 425 DHXV 436
+ V
Sbjct: 116 EEDV 119
[137][TOP]
>UniRef100_Q75B05 ADL120Cp n=1 Tax=Eremothecium gossypii RepID=Q75B05_ASHGO
Length = 311
Score = 96.3 bits (238), Expect = 1e-18
Identities = 54/116 (46%), Positives = 73/116 (62%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+VKI D F L + D S+AN+LRR+MI+E+PT+AID VEIE N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISH 65
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGL+PL ++ + + RDC D C+ CSV L ++ T +V DL
Sbjct: 66 RLGLVPLQSKDIDQLVYCRDCFCED---HCDRCSVLLTLHAVGESESTTNVYAKDL 118
[138][TOP]
>UniRef100_C8V1J2 RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090) n=2
Tax=Emericella nidulans RepID=C8V1J2_EMENI
Length = 333
Score = 96.3 bits (238), Expect = 1e-18
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F+L D + AN+LRRVM++E+PT+AID+VE+E NSSVL DE +AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL ++ + ++RDC+ D C CSV L +C +D + V DL
Sbjct: 72 RLGLIPLDSKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTSDEIMRVYARDL 125
[139][TOP]
>UniRef100_A4HH22 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
braziliensis RepID=A4HH22_LEIBR
Length = 337
Score = 95.9 bits (237), Expect = 1e-18
Identities = 47/89 (52%), Positives = 64/89 (71%)
Frame = +2
Query: 110 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERAMA 289
F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL +E+A
Sbjct: 21 FQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKR 80
Query: 290 MRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+ F +DC C G G C C + L+V+C
Sbjct: 81 LNFPQDC-GCGGSG-CPDCQITGSLKVQC 107
[140][TOP]
>UniRef100_Q6CQL6 KLLA0D16170p n=1 Tax=Kluyveromyces lactis RepID=Q6CQL6_KLULA
Length = 307
Score = 95.9 bits (237), Expect = 1e-18
Identities = 56/116 (48%), Positives = 72/116 (62%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+VKI D F L + D ++AN+LRRVMISE+PT+AID VEIE N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL + + + RDC D C+ CSV L ++ T +V DL
Sbjct: 66 RLGLIPLQSADIDQVVYCRDCYCED---HCDRCSVELILHAIGESESTTNVYAKDL 118
[141][TOP]
>UniRef100_C5DHI5 KLTH0E04598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DHI5_LACTC
Length = 328
Score = 95.9 bits (237), Expect = 1e-18
Identities = 54/116 (46%), Positives = 73/116 (62%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+VKI D F L + D ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISH 65
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL + + + RDC D C+ CSV L+ ++ T +V DL
Sbjct: 66 RLGLIPLQSSDINDLIYCRDCYCED---HCDRCSVVLTLQAVGESESTTNVYAKDL 118
[142][TOP]
>UniRef100_UPI000069DABC DNA-directed RNA polymerase II subunit RPB3 (RNA polymerase II
subunit B3) (RNA polymerase II subunit 3) (DNA-directed
RNA polymerase II subunit C) (DNA-directed RNA
polymerase II 33 kDa polypeptide) (RPB33) (RPB31). n=1
Tax=Xenopus (Silurana) tropicalis RepID=UPI000069DABC
Length = 275
Score = 95.5 bits (236), Expect = 2e-18
Identities = 53/117 (45%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVT 403
FIAHR+GLIPLT++ + +++SR +G C C+ F + C+ + +T
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRGNSVTEG---CR-CANKFTGLLGCLPFPSFQIT 115
[143][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
strain Friedlin RepID=Q4FY45_LEIMA
Length = 337
Score = 95.5 bits (236), Expect = 2e-18
Identities = 47/89 (52%), Positives = 64/89 (71%)
Frame = +2
Query: 110 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERAMA 289
F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL +E+A
Sbjct: 21 FQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKR 80
Query: 290 MRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+ F +DC C G G C C + L+V+C
Sbjct: 81 LNFPQDC-GCGGSG-CPDCQITGSLKVQC 107
[144][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
infantum RepID=A4I451_LEIIN
Length = 337
Score = 95.5 bits (236), Expect = 2e-18
Identities = 47/89 (52%), Positives = 64/89 (71%)
Frame = +2
Query: 110 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERAMA 289
F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL +E+A
Sbjct: 21 FQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKR 80
Query: 290 MRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+ F +DC C G G C C + L+V+C
Sbjct: 81 LNFPQDC-GCGGSG-CPDCQITGSLKVQC 107
[145][TOP]
>UniRef100_Q0UL31 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UL31_PHANO
Length = 335
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/114 (42%), Positives = 71/114 (62%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
V+ L A F +++ + AN+LRRVM++E+PT+AID+VE+ N+SVL DEF+ HRL
Sbjct: 12 VRFLEANSQRANFIVQNFNLETANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHRL 71
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
GLIPL++ + ++RDCD +G C+ C+V L KC + V DL
Sbjct: 72 GLIPLSSRGVDDLLYARDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVFARDL 122
[146][TOP]
>UniRef100_B3L2P7 Dna-directed rna polymerase II, putative n=1 Tax=Plasmodium
knowlesi strain H RepID=B3L2P7_PLAKH
Length = 334
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/124 (37%), Positives = 73/124 (58%)
Frame = +2
Query: 59 ARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 238
A+ V+I L D F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF
Sbjct: 10 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 69
Query: 239 IAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLY 418
+AHRLGLIP+ + F C + C C++ + ++VKC +DVT D+
Sbjct: 70 LAHRLGLIPIDSRNVKNFEFREKCKCKE---TCSKCTIQYLIQVKCNNVSKIDVTHYDIE 126
Query: 419 CSDH 430
+H
Sbjct: 127 SVEH 130
[147][TOP]
>UniRef100_B3NAC7 GG23887 n=1 Tax=Drosophila erecta RepID=B3NAC7_DROER
Length = 117
Score = 94.4 bits (233), Expect = 4e-18
Identities = 45/85 (52%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTERAM-AMRFSRD 307
F+AHR+GLIPL ++ + ++++RD
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRD 87
[148][TOP]
>UniRef100_C5DWL5 ZYRO0D15796p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DWL5_ZYGRC
Length = 308
Score = 93.6 bits (231), Expect = 6e-18
Identities = 53/116 (45%), Positives = 72/116 (62%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+VKI + F L + ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFIAH
Sbjct: 6 PQVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAH 65
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL + + + RDC D C+ CSV L+ ++ T +V DL
Sbjct: 66 RLGLIPLQSTDIEQLEYCRDCFCED---HCDKCSVVLTLQAIGESESTTNVYAKDL 118
[149][TOP]
>UniRef100_Q8I2S6 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8I2S6_PLAF7
Length = 335
Score = 93.2 bits (230), Expect = 8e-18
Identities = 46/120 (38%), Positives = 71/120 (59%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
++ I L D F L ++++ IANALRR+M+SE+PT+AID+V + N+S +DEFIAHR
Sbjct: 12 QINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFIAHR 71
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDH 430
LGLIP+ + F C + C C++ + + VKC +DV+ D+ +H
Sbjct: 72 LGLIPIDSRNVNNYEFREKCKCKE---TCSKCTIQYIIEVKCNHSNKIDVSHYDIESLEH 128
[150][TOP]
>UniRef100_Q4Z7P9 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium berghei
RepID=Q4Z7P9_PLABE
Length = 331
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/120 (37%), Positives = 74/120 (61%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
+++I + + F L +++A++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR
Sbjct: 10 KIEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 69
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDH 430
+GLIP+ + + F C + C C+V + + VKC ++V+ D+ DH
Sbjct: 70 IGLIPIDSRNIKSYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKINVSHYDIEALDH 126
[151][TOP]
>UniRef100_Q8IP63 RNA polymerase II 33kD subunit, isoform B n=1 Tax=Drosophila
melanogaster RepID=Q8IP63_DROME
Length = 117
Score = 92.8 bits (229), Expect = 1e-17
Identities = 43/74 (58%), Positives = 58/74 (78%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTE 277
F+AHR+GLIPL ++
Sbjct: 63 FLAHRIGLIPLISD 76
[152][TOP]
>UniRef100_B3MN19 GF19666 n=1 Tax=Drosophila ananassae RepID=B3MN19_DROAN
Length = 125
Score = 92.8 bits (229), Expect = 1e-17
Identities = 43/74 (58%), Positives = 58/74 (78%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 236 FIAHRLGLIPLTTE 277
F+AHR+GLIPL ++
Sbjct: 63 FLAHRIGLIPLISD 76
[153][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5LCN7_9ALVE
Length = 336
Score = 92.4 bits (228), Expect = 1e-17
Identities = 49/117 (41%), Positives = 71/117 (60%)
Frame = +2
Query: 65 MPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 244
MP +++ L D+ +F + + + +IANALRR+MI+EVPT+AID V IE NSS L DEF+A
Sbjct: 12 MPVIEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVA 71
Query: 245 HRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
HRLGL+P+ ++ + +DC C C+V + L V DVT D+
Sbjct: 72 HRLGLLPINSKEVDSYSDPKDCQCYSS---CPNCTVKYTLDVIAEDHGVTDVTHLDI 125
[154][TOP]
>UniRef100_A5K6U4 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium vivax
RepID=A5K6U4_PLAVI
Length = 333
Score = 92.4 bits (228), Expect = 1e-17
Identities = 45/124 (36%), Positives = 73/124 (58%)
Frame = +2
Query: 59 ARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 238
A+ V+I L D F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF
Sbjct: 9 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 68
Query: 239 IAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLY 418
+AHRLGLIP+ + F C + C C++ + ++VKC +++T D+
Sbjct: 69 LAHRLGLIPIDSTNVKNFEFREKCKCKE---TCSKCTIQYLIQVKCNNVSKIEITHHDIE 125
Query: 419 CSDH 430
+H
Sbjct: 126 SVEH 129
[155][TOP]
>UniRef100_Q7RLX3 Conjugation stage-specific protein, putative n=1 Tax=Plasmodium
yoelii yoelii RepID=Q7RLX3_PLAYO
Length = 335
Score = 92.0 bits (227), Expect = 2e-17
Identities = 45/119 (37%), Positives = 72/119 (60%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
++I + + F L ++++++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR+
Sbjct: 15 IEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 74
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDH 430
GLIP+ + F C + C C+V + + VKC +DV+ D+ DH
Sbjct: 75 GLIPIDSRNIKNYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDH 130
[156][TOP]
>UniRef100_Q4XR41 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
chabaudi RepID=Q4XR41_PLACH
Length = 331
Score = 91.3 bits (225), Expect = 3e-17
Identities = 44/119 (36%), Positives = 72/119 (60%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
++I + + F L +++ ++ANALRR+M+SEVPT+A+D+V + N+S +DEFIAHR+
Sbjct: 11 IEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRI 70
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDH 430
GLIP+ + + F C + C C+V + + VKC +DV+ D+ DH
Sbjct: 71 GLIPIDSRNIKSYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDH 126
[157][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N9T5_THEPA
Length = 354
Score = 91.3 bits (225), Expect = 3e-17
Identities = 47/120 (39%), Positives = 73/120 (60%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P ++I+ L+ D F L ++D S ANA+RRV++SE+P++AI++V + N+SVL+DE+I+H
Sbjct: 10 PSIEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISH 69
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSD 427
RLGL+P+ + A F C D C C+V + L V C + VT D+ D
Sbjct: 70 RLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCKDSDSRVVTHFDIVPDD 126
[158][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
RepID=A7AWB4_BABBO
Length = 382
Score = 91.3 bits (225), Expect = 3e-17
Identities = 51/125 (40%), Positives = 74/125 (59%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
ME S P + I+ L F L + D + AN+LRR+M+SE+P++AI++V + N+S
Sbjct: 1 MEWSSRQLRPSIDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTS 60
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
VL+DE+IAHRLGL+P+ + A + C D C C+V + L VKCM D T V
Sbjct: 61 VLHDEYIAHRLGLLPIESSSARNFEYRDKCTCSD---KCSRCTVEYSLDVKCM-DDTRVV 116
Query: 401 TXXDL 415
T D+
Sbjct: 117 THYDI 121
[159][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
Length = 363
Score = 90.9 bits (224), Expect = 4e-17
Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 7/131 (5%)
Frame = +2
Query: 71 RVKILXLKD------DMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 232
+VKIL K + F+L + D S AN LRRVM++EVP + I+ V I N+SVL D
Sbjct: 28 KVKILDCKKHEHSAGETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPD 87
Query: 233 EFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTD-XTLDVTXX 409
E IAHR+GL+PL + +A M+++RDC C G G C C + L+V C ++ +L V
Sbjct: 88 EMIAHRIGLVPLYSMKARRMQYARDC-LCGGSG-CGECQINGELKVSCPSNKHSLQVFMD 145
Query: 410 DLYCSDHXVCP 442
L D V P
Sbjct: 146 SLKIDDEEVYP 156
[160][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
RepID=Q4UFZ3_THEAN
Length = 354
Score = 90.1 bits (222), Expect = 7e-17
Identities = 46/120 (38%), Positives = 73/120 (60%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P ++++ L+ D F L ++D S ANA+RRV++SE+P++AI++V + N+SVL+DE+I+H
Sbjct: 10 PSIEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISH 69
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSD 427
RLGL+P+ + A F C D C C+V + L V C + VT D+ D
Sbjct: 70 RLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCNDSNSRLVTHFDIVPDD 126
[161][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
RepID=CNJC_TETTH
Length = 310
Score = 89.0 bits (219), Expect = 2e-16
Identities = 49/125 (39%), Positives = 78/125 (62%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
MEG+ ++ + L++ F L + D S+AN+LRR++++E+ TIAI V++ N+S
Sbjct: 1 MEGI------KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTS 54
Query: 221 VLNDEFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDV 400
L DE+IAHRLGLIPL + + + +C+ C G+ C+ C++ F LRV T+ L+V
Sbjct: 55 SLPDEYIAHRLGLIPLNSAKVDDYNYIWNCN-CQGE--CDRCTIHFDLRVSNFTNEVLEV 111
Query: 401 TXXDL 415
T DL
Sbjct: 112 TSLDL 116
[162][TOP]
>UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2
Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG
Length = 337
Score = 88.2 bits (217), Expect = 3e-16
Identities = 49/112 (43%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Frame = +2
Query: 110 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERAMA 289
F+L + D S AN LRRV+++EVP + ++ V I N+SVL DE IAHR+GL+PL ++RA
Sbjct: 21 FKLNEVDNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLYSKRAKQ 80
Query: 290 MRFSRDCDACDGDGXCEFCSVXFHLRVKCMTD-XTLDVTXXDLYCSDHXVCP 442
M+F DC C G G C C + L+V+C ++ +L V L D V P
Sbjct: 81 MQFFHDC-LCGGTG-CIECQITGELKVRCPSNQHSLQVFADSLKIDDEGVYP 130
[163][TOP]
>UniRef100_B6GWS8 Pc12g07350 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GWS8_PENCW
Length = 335
Score = 87.8 bits (216), Expect = 3e-16
Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+V + + F L D + AN+LRR +++EVPT+A+DL+EIE N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71
Query: 248 RLGLIPLTTERA-MAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
RLG+IPL + + ++RDCD D C CSV L +C
Sbjct: 72 RLGMIPLNSYNCDQDLDYTRDCDCED---HCVRCSVTLSLHARC 112
[164][TOP]
>UniRef100_Q9AW23 DNA-directed RNA polymerase II n=1 Tax=Guillardia theta
RepID=Q9AW23_GUITH
Length = 299
Score = 86.7 bits (213), Expect = 8e-16
Identities = 44/99 (44%), Positives = 66/99 (66%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+K+ + D + + AN++RR+M++E+PT+AID V IE N+S DEFIAHRL
Sbjct: 1 MKVEKISDFEIKINFNNFPIVYANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRL 60
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRV 370
GLIP+ +E A +++SR+CD C+ + CE CS+ F L V
Sbjct: 61 GLIPIFSENADLIKYSRECD-CENE--CEKCSILFTLDV 96
[165][TOP]
>UniRef100_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
n=1 Tax=Trichomonas vaginalis G3 RepID=A2F4R6_TRIVA
Length = 322
Score = 85.5 bits (210), Expect = 2e-15
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P++ + + F L + ANALRRVMI+EVPT+A+D VE N+S L DE+IAH
Sbjct: 13 PQIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAH 72
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGD--GXCEFCSVXFHLRVKC--MTDXTLDVTXXDL 415
RL LIP +E A + C+ CDG G C C+V + + C +D ++VT DL
Sbjct: 73 RLALIPFVSEDADKFFYHSQCN-CDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDL 131
[166][TOP]
>UniRef100_Q5KG24 RNA polymerase II subunit 3, putative n=1 Tax=Filobasidiella
neoformans RepID=Q5KG24_CRYNE
Length = 377
Score = 84.3 bits (207), Expect = 4e-15
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
PR+ + L + A F L + + AN+LRRVM+++VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 248 RLGLIPLTTER-AMAMRFSRDCDACDGDGXCEFCSVXFHLRV 370
RLGLIPL + + +R++RDCD +G C +C V L+V
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKV 123
[167][TOP]
>UniRef100_Q55RL9 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q55RL9_CRYNE
Length = 377
Score = 84.3 bits (207), Expect = 4e-15
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
PR+ + L + A F L + + AN+LRRVM+++VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 248 RLGLIPLTTER-AMAMRFSRDCDACDGDGXCEFCSVXFHLRV 370
RLGLIPL + + +R++RDCD +G C +C V L+V
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKV 123
[168][TOP]
>UniRef100_UPI00005A0224 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0224
Length = 72
Score = 84.0 bits (206), Expect = 5e-15
Identities = 40/68 (58%), Positives = 53/68 (77%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
YA P V+I L D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 236 FIAHRLGL 259
FIAHRLGL
Sbjct: 63 FIAHRLGL 70
[169][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
Length = 308
Score = 84.0 bits (206), Expect = 5e-15
Identities = 51/115 (44%), Positives = 71/115 (61%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
R++IL L D+ +F + D SIANA+RRVMI+EVP +AI V+I N+S L+DEF+A R
Sbjct: 13 RIEILELSDEKCKFSF-EGDLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
LGLIPL + A + + + DA D + V F LR K + D L++T L
Sbjct: 72 LGLIPLVSYAADSKMYDWEADADSIDD--QKTKVVFTLRQKNLNDAPLEITSQHL 124
[170][TOP]
>UniRef100_Q6IP84 MGC78824 protein n=1 Tax=Xenopus laevis RepID=Q6IP84_XENLA
Length = 347
Score = 83.6 bits (205), Expect = 6e-15
Identities = 43/102 (42%), Positives = 67/102 (65%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
R+ I+ ++DD+ F++ DASIANA RR+++SEVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RIDIVKMEDDILEFDMVGIDASIANAFRRILLSEVPTVAVEKVYVYNNTSIIQDEILAHR 109
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + + S D D +G E ++ F L VKC
Sbjct: 110 LGLIPIRADPRLFEYRSAD----DAEG-TEIDTLQFELNVKC 146
[171][TOP]
>UniRef100_C8TDY9 Rna polymerase ii b3 subunit n=1 Tax=Eimeria tenella
RepID=C8TDY9_EIMTE
Length = 147
Score = 83.6 bits (205), Expect = 6e-15
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+++ L + + RF L + DASIANALRRVMISEVPT+AIDLV + N+SVL+DE+I HRL
Sbjct: 44 IRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHRL 103
Query: 254 GLIPL 268
GL+P+
Sbjct: 104 GLLPI 108
[172][TOP]
>UniRef100_A2SSV7 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanocorpusculum
labreanum Z RepID=A2SSV7_METLZ
Length = 275
Score = 83.2 bits (204), Expect = 8e-15
Identities = 52/118 (44%), Positives = 68/118 (57%)
Frame = +2
Query: 89 LKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 268
L D +ARF + + ANALRR MI EVPT+AI+ + I N+SVL DE +AHRLGLIP+
Sbjct: 8 LDDSVARFTIHGATPAFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIPI 67
Query: 269 TTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDHXVCP 442
T+ ++ R +C G+G C C+V F L V + VT DL D V P
Sbjct: 68 KTD--LSQYVPRSECSCGGEG-CPHCTVMFTLSV----EGPKMVTSGDLISMDENVVP 118
[173][TOP]
>UniRef100_UPI000180C3EB PREDICTED: similar to RNA polymerase 1-1 n=1 Tax=Ciona intestinalis
RepID=UPI000180C3EB
Length = 345
Score = 81.3 bits (199), Expect = 3e-14
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+ ++ L D +F++ DA+IANA RR++I+EVPT+AI+ V I N++V+ DE +AHRL
Sbjct: 48 INVIELGPDSMQFDMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRL 107
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTL--DVTXXDLYCSD 427
GLIPLT + + D D DG E ++ F L +KC + + D T D+
Sbjct: 108 GLIPLTADAKLFEYRQGD----DADGTPE-DTLEFELNIKCTKNLSAPKDTTDLDVLYKH 162
Query: 428 HXV 436
H V
Sbjct: 163 HKV 165
[174][TOP]
>UniRef100_Q5CPY6 RNA polymerase III C5 subunit n=1 Tax=Cryptosporidium parvum Iowa
II RepID=Q5CPY6_CRYPV
Length = 344
Score = 81.3 bits (199), Expect = 3e-14
Identities = 43/104 (41%), Positives = 62/104 (59%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+K+ LK D F++ DASIANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTD 385
GLIP+ + + D D + + C F L VKC D
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKD 154
[175][TOP]
>UniRef100_Q5CJZ9 DNA-directed RNA polymerase I n=1 Tax=Cryptosporidium hominis
RepID=Q5CJZ9_CRYHO
Length = 344
Score = 81.3 bits (199), Expect = 3e-14
Identities = 43/104 (41%), Positives = 62/104 (59%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+K+ LK D F++ DASIANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTD 385
GLIP+ + + D D + + C F L VKC D
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKD 154
[176][TOP]
>UniRef100_C9SI18 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Verticillium albo-atrum VaMs.102 RepID=C9SI18_9PEZI
Length = 375
Score = 81.3 bits (199), Expect = 3e-14
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV+ L + F L DASIANALRR++ISE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 54 RVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYIYNNTSVIQDEVLAHR 113
Query: 251 LGLIPLTTERAMAMRFSR----DCDACDGDGXCEFCSVXFHLRVKC 376
LGL+P T +A F R + D GD ++ +V LR++C
Sbjct: 114 LGLVPFTANKAGLRDFLRWRKKNPDGTPGD-IFDYNTVQLRLRIEC 158
[177][TOP]
>UniRef100_Q12ZR3 DNA-directed RNA polymerase subunit D n=1 Tax=Methanococcoides
burtonii DSM 6242 RepID=Q12ZR3_METBU
Length = 267
Score = 81.3 bits (199), Expect = 3e-14
Identities = 54/123 (43%), Positives = 70/123 (56%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+ IL L D A+F L +T A+ AN +RR M+++VPT+AID V I N+SVL DE +A RL
Sbjct: 3 IDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLALRL 62
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDHX 433
GLIPLTT + +D CDG G C C+V L V+ V D+ SD
Sbjct: 63 GLIPLTT--SFDDFVPQDKCTCDGAG-CPACTVSLTLSVETDESGQTIVHSGDIVSSDPN 119
Query: 434 VCP 442
V P
Sbjct: 120 VQP 122
[178][TOP]
>UniRef100_UPI000155CFD6 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C n=1 Tax=Ornithorhynchus anatinus
RepID=UPI000155CFD6
Length = 352
Score = 80.5 bits (197), Expect = 5e-14
Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Frame = +2
Query: 155 RVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERAM-AMRFSRDCDACDGDG 331
R I P ++ID V+I+ NSSVL+DEFIAHRLGLIPLT++ + +++SRDC +
Sbjct: 113 RSPIQAPPILSIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTC---EE 169
Query: 332 XCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDHXVCP 442
C CSV F L V+C D T VT DL + V P
Sbjct: 170 FCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIP 206
[179][TOP]
>UniRef100_B3S4F3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S4F3_TRIAD
Length = 349
Score = 79.0 bits (193), Expect = 2e-13
Identities = 41/109 (37%), Positives = 68/109 (62%)
Frame = +2
Query: 53 SYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 232
S+ + +++I+ + ++ F++ DASIANA RR+M+SEVP +AI+ V I N+S++ D
Sbjct: 42 SFRKNFKIEIIKVDNEEMEFDMIGIDASIANAYRRIMLSEVPAMAIEKVVIHNNTSIIQD 101
Query: 233 EFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCM 379
E +AHRLGLIP+ + + F+ GD S+ F L++KC+
Sbjct: 102 EVLAHRLGLIPIAADPKLFDNFN------PGDTPTNKNSITFTLQIKCI 144
[180][TOP]
>UniRef100_Q4PBM5 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4PBM5_USTMA
Length = 320
Score = 78.6 bits (192), Expect = 2e-13
Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
+V + L D F+L DASIANA+RRV+++EVPT+AI+ V I N+S++ DE ++HR
Sbjct: 94 KVIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 153
Query: 251 LGLIPLT-TERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGL+PL +AMR GD + +V FHL+ KC
Sbjct: 154 LGLVPLAINPDKVAMRM-------PGDEADDSNTVVFHLKAKC 189
[181][TOP]
>UniRef100_C0SF50 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SF50_PARBP
Length = 345
Score = 78.2 bits (191), Expect = 3e-13
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Frame = +2
Query: 104 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--TE 277
A F L DASIANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 29 ASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 88
Query: 278 RAMAMRFSR---DCDACDGDGXCEFCSVXFHLRVKC 376
+R+ R + D G ++ ++ HL VKC
Sbjct: 89 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVKC 124
[182][TOP]
>UniRef100_B5IWT9 RNA polymerase Rpb3/Rpb11 dimerisation domain n=1 Tax=Thermococcus
barophilus MP RepID=B5IWT9_9EURY
Length = 258
Score = 78.2 bits (191), Expect = 3e-13
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
++K+L ++D RF L DA+ ANALRRV+I EVPT A+D VE N S L DE IAHR
Sbjct: 2 KIKVLEKREDAIRFILEGVDAAFANALRRVIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 251 LGLIPLTT 274
L +IPLTT
Sbjct: 62 LAMIPLTT 69
[183][TOP]
>UniRef100_UPI0000EDC949 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Ornithorhynchus anatinus RepID=UPI0000EDC949
Length = 346
Score = 77.8 bits (190), Expect = 4e-13
Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV ++ +++D F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVQMEEDSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIMQDEVLAHR 109
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+T + R R D + + D ++ F L+VKC
Sbjct: 110 LGLIPITADPRLFEYRNQGDEEGTEID------TLQFQLKVKC 146
[184][TOP]
>UniRef100_C1GK69 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GK69_PARBD
Length = 380
Score = 77.8 bits (190), Expect = 4e-13
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Frame = +2
Query: 104 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--TE 277
A F L DASIANA RR++ISE+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 64 ASFSLIGVDASIANAFRRILISEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 123
Query: 278 RAMAMRFSR---DCDACDGDGXCEFCSVXFHLRVKC 376
+R+ R + D G ++ ++ HL V+C
Sbjct: 124 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVEC 159
[185][TOP]
>UniRef100_B6JXY4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6JXY4_SCHJY
Length = 349
Score = 77.8 bits (190), Expect = 4e-13
Identities = 43/101 (42%), Positives = 61/101 (60%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+KI L D F++ DASI NA RR++I+E+PT+AI+ V I N+S+L DE ++HRL
Sbjct: 48 IKITSLDDLNMTFDISGIDASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDEVLSHRL 107
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
GLIPL + M F R + ++ +V F L VKC
Sbjct: 108 GLIPLKADPDMFKWFVRPGPGMEAT-HTDYDTVVFSLNVKC 147
[186][TOP]
>UniRef100_C6A1B3 DNA-directed RNA polymerase subunit D n=1 Tax=Thermococcus
sibiricus MM 739 RepID=C6A1B3_THESM
Length = 271
Score = 77.8 bits (190), Expect = 4e-13
Identities = 42/71 (59%), Positives = 47/71 (66%)
Frame = +2
Query: 62 RMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 241
R ++KIL +DD RF L D + ANALRR +I EVPT AID VE N S L DE I
Sbjct: 12 RKMQIKILEKRDDAIRFILEGMDIAFANALRRTIIGEVPTFAIDEVEFYENDSALFDEII 71
Query: 242 AHRLGLIPLTT 274
AHRL LIPLTT
Sbjct: 72 AHRLSLIPLTT 82
[187][TOP]
>UniRef100_UPI00004DA7E9 DNA-directed RNA polymerases I and III subunit RPAC1 (RNA
polymerases I and III subunit AC1) (DNA-directed RNA
polymerase I subunit C) (DNA- directed RNA polymerases I
and III 40 kDa polypeptide) (RPA40) (RPA39) (RPC40)
(AC40). n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI00004DA7E9
Length = 347
Score = 77.4 bits (189), Expect = 5e-13
Identities = 41/102 (40%), Positives = 65/102 (63%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
R+ I+ ++ D F++ DASIANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RIDIVKMEGDTLEFDMVGIDASIANAFRRILLAEVPTMAVEKVYVYNNTSIIQDEILAHR 109
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R A +G+G E ++ F L VKC
Sbjct: 110 LGLIPIRVD----PRLFEYRSAEEGEG-TEIDTLQFELNVKC 146
[188][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
histolytica HM-1:IMSS RepID=C4M554_ENTHI
Length = 283
Score = 77.4 bits (189), Expect = 5e-13
Identities = 39/76 (51%), Positives = 50/76 (65%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
ME Y R P + + K++ F + TD S+ N LRRV+++E PTIAI LV + NSS
Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60
Query: 221 VLNDEFIAHRLGLIPL 268
L DEFIAHRLGLIP+
Sbjct: 61 YLCDEFIAHRLGLIPI 76
[189][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
dispar SAW760 RepID=B0EHR6_ENTDI
Length = 283
Score = 77.4 bits (189), Expect = 5e-13
Identities = 39/76 (51%), Positives = 50/76 (65%)
Frame = +2
Query: 41 MEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 220
ME Y R P + + K++ F + TD S+ N LRRV+++E PTIAI LV + NSS
Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60
Query: 221 VLNDEFIAHRLGLIPL 268
L DEFIAHRLGLIP+
Sbjct: 61 YLCDEFIAHRLGLIPI 76
[190][TOP]
>UniRef100_Q46GD0 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanosarcina
barkeri str. Fusaro RepID=Q46GD0_METBF
Length = 266
Score = 77.4 bits (189), Expect = 5e-13
Identities = 50/123 (40%), Positives = 65/123 (52%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
V IL L D A+F L S AN +RR MI++VPT+AI+ V + N+SVL DE +A RL
Sbjct: 5 VDILELSDRSAKFVLSKVSTSFANGIRRAMIADVPTLAIEYVNLYENTSVLYDEQLALRL 64
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDHX 433
LIPL T+ + +CD C G+G C C V L + V DL SD
Sbjct: 65 SLIPLVTDVETYVP-QAECDVCGGEG-CPACEVSLTL----SAEGPCTVYSRDLISSDPK 118
Query: 434 VCP 442
+ P
Sbjct: 119 IQP 121
[191][TOP]
>UniRef100_Q0W1V3 DNA-directed RNA polymerase, subunit D n=1 Tax=uncultured
methanogenic archaeon RC-I RepID=Q0W1V3_UNCMA
Length = 262
Score = 77.4 bits (189), Expect = 5e-13
Identities = 45/94 (47%), Positives = 60/94 (63%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
+++I+ LKD A+F L D + AN LRR MI++VP +AID V+I N+SVL DE +A R
Sbjct: 2 KLEIIELKDRKAKFVLTDVTPAFANGLRRAMIADVPKMAIDYVDIYDNTSVLFDEMLALR 61
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSV 352
LGLIPL T M + +C+ C G G C C V
Sbjct: 62 LGLIPLKTNLDM-YQLQSECE-CKGAG-CSLCQV 92
[192][TOP]
>UniRef100_C8S812 RNA polymerase insert n=1 Tax=Ferroglobus placidus DSM 10642
RepID=C8S812_FERPL
Length = 262
Score = 77.4 bits (189), Expect = 5e-13
Identities = 45/101 (44%), Positives = 63/101 (62%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
+V+IL ++ +F L+D+D ANA RR M S VPT+A+D V+ +N+S+L DE IAHR
Sbjct: 2 KVEILSEEELKIKFILKDSDYVFANAWRRAMKSLVPTLAVDYVDFYLNTSLLYDEIIAHR 61
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVK 373
+GLIPL T+ F C C+G+G C C V L V+
Sbjct: 62 IGLIPLKTD-LERYNFQDKC-VCEGEG-CPNCQVSLRLNVE 99
[193][TOP]
>UniRef100_O28002 DNA-directed RNA polymerase subunit D n=1 Tax=Archaeoglobus
fulgidus RepID=RPOD_ARCFU
Length = 264
Score = 77.0 bits (188), Expect = 6e-13
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = +2
Query: 65 MPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 244
MP ++IL KD +F L++ ++AN+ RR M +EVP +A+D V+I +NSS DE IA
Sbjct: 2 MPEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIA 61
Query: 245 HRLGLIPLTTERAMAMRFSRDCD-ACDGDGXCEFCSVXFHLRVK 373
HRL ++P+ T RF+ + +C G+G C C + F L V+
Sbjct: 62 HRLAMLPIKT---YLDRFNMQSECSCGGEG-CPNCQISFRLNVE 101
[194][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
Length = 351
Score = 76.6 bits (187), Expect = 8e-13
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+KI L D F+L DA++ANALRR+++ EVPT+AI+ V+I NS V+ DE +AHRL
Sbjct: 66 IKINELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRL 125
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCM---TDXTLDVTXXDLYCS 424
GLIP + + + D D + + C F L V+C D +T +Y
Sbjct: 126 GLIPFNIDLDLIDFRAEDQDLNEKNSVC------FKLCVECNKYDIDDKNGITSKAIYSK 179
Query: 425 D 427
D
Sbjct: 180 D 180
[195][TOP]
>UniRef100_C1H4P1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H4P1_PARBA
Length = 380
Score = 76.6 bits (187), Expect = 8e-13
Identities = 42/96 (43%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Frame = +2
Query: 104 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--TE 277
A F L DASIANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 64 ASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 123
Query: 278 RAMAMRFSR---DCDACDGDGXCEFCSVXFHLRVKC 376
+R+ R + D G ++ ++ HL V+C
Sbjct: 124 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVEC 159
[196][TOP]
>UniRef100_UPI00019857F6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI00019857F6
Length = 372
Score = 76.3 bits (186), Expect = 1e-12
Identities = 40/102 (39%), Positives = 64/102 (62%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV+++ L +D F++ D SIANA RR++I+E+PT+AI+ V I N+S++ DE +AHR
Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + + D + D E ++ F+L V+C
Sbjct: 126 LGLIPINADPRLF------DDLSENDTPNEKNTIVFNLHVRC 161
[197][TOP]
>UniRef100_UPI0000E242AB PREDICTED: similar to RNA polymerase II subunit hRPB33 isoform 2
n=1 Tax=Pan troglodytes RepID=UPI0000E242AB
Length = 242
Score = 76.3 bits (186), Expect = 1e-12
Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +2
Query: 182 IAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERAM-AMRFSRDCDACDGDGXCEFCSVXF 358
+AID V+I+ NSSVL+DEFIAHRLGLIPL ++ + +++SRDC + C CSV F
Sbjct: 12 LAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEF 68
Query: 359 HLRVKCMTDXTLDVTXXDLYCSDHXVCP 442
L V+C D T VT DL + V P
Sbjct: 69 TLDVRCNEDQTRHVTSRDLISNSPRVIP 96
[198][TOP]
>UniRef100_A7Q9B1 Chromosome chr19 scaffold_66, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q9B1_VITVI
Length = 362
Score = 76.3 bits (186), Expect = 1e-12
Identities = 40/102 (39%), Positives = 64/102 (62%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV+++ L +D F++ D SIANA RR++I+E+PT+AI+ V I N+S++ DE +AHR
Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + + D + D E ++ F+L V+C
Sbjct: 126 LGLIPINADPRLF------DDLSENDTPNEKNTIVFNLHVRC 161
[199][TOP]
>UniRef100_B0EJB9 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Entamoeba dispar SAW760 RepID=B0EJB9_ENTDI
Length = 291
Score = 76.3 bits (186), Expect = 1e-12
Identities = 44/120 (36%), Positives = 65/120 (54%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
PR+ + + F+ D S+AN LRR+MI+EVPT+AI++V +E NSS + DE + H
Sbjct: 5 PRIIKISESPEKVEFDAMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCH 64
Query: 248 RLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSD 427
RLGLIP+ + +F +D D E ++ F L V C D + +Y SD
Sbjct: 65 RLGLIPILAD-PRKFKFPKDRHFTD---PTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSD 120
[200][TOP]
>UniRef100_C1MRA1 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MRA1_9CHLO
Length = 410
Score = 75.9 bits (185), Expect = 1e-12
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
++++ L D+ FE++ +IANA RR++I+EVPT+AI+ V + N+SV+ DE AHR
Sbjct: 80 KLEVTHLDDEKVEFEMQGLSPAIANAFRRILIAEVPTMAIEKVFMVNNTSVIQDEVFAHR 139
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVT 403
LGLIP+ + R +R +GD E ++ F + VKC + T D T
Sbjct: 140 LGLIPIRADPRLFDLR-------GEGDTPTEKNTIVFKMCVKCTREKTTDGT 184
[201][TOP]
>UniRef100_Q6C4T2 YALI0E23947p n=1 Tax=Yarrowia lipolytica RepID=Q6C4T2_YARLI
Length = 339
Score = 75.9 bits (185), Expect = 1e-12
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
+VKI L D+ + F+L D S+ANA RR+MI+++PTIA++ V I N+S++ DE +AHR
Sbjct: 46 QVKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFIHANTSIIQDEVLAHR 105
Query: 251 LGLIPLTTERAMAMRFSRDCDACD 322
LGL+PL R DA +
Sbjct: 106 LGLVPLVINPERINALPRGLDASE 129
[202][TOP]
>UniRef100_B9GFY9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GFY9_POPTR
Length = 390
Score = 75.5 bits (184), Expect = 2e-12
Identities = 35/69 (50%), Positives = 51/69 (73%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
R+K++ L D F++ DA++ANA RR++ISEVPT+AI+ V I N+SV+ DE +AHR
Sbjct: 88 RIKVIALDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVIQDEVLAHR 147
Query: 251 LGLIPLTTE 277
LGLIP+ +
Sbjct: 148 LGLIPIKVD 156
[203][TOP]
>UniRef100_A7IAH5 DNA-directed RNA polymerase n=1 Tax=Candidatus Methanoregula boonei
6A8 RepID=A7IAH5_METB6
Length = 276
Score = 75.5 bits (184), Expect = 2e-12
Identities = 48/123 (39%), Positives = 62/123 (50%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
++ L D +ARF L AN+ RR MI EVPT+AI+ V I N+S L DE +AHRL
Sbjct: 3 IEFASLDDTVARFTLSGAQPGFANSFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAHRL 62
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDHX 433
GLIP+ T+ +S D G C C+V + L V + VT DL D
Sbjct: 63 GLIPIRTD---LTSYSTQGDCSCGGAGCPSCTVTYTLSV----EGPKLVTSSDLIPQDPQ 115
Query: 434 VCP 442
P
Sbjct: 116 AAP 118
[204][TOP]
>UniRef100_UPI0000F2C148 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Monodelphis domestica RepID=UPI0000F2C148
Length = 346
Score = 74.7 bits (182), Expect = 3e-12
Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
+ R RV ++ + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE
Sbjct: 45 FEREFRVDVVHMDENSLEFDMIGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDE 104
Query: 236 FIAHRLGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+AHRLGLIP+ + R R D D + D ++ F L+VKC
Sbjct: 105 ILAHRLGLIPIRADPRLFEYRNQGDEDGTEID------TLQFQLKVKC 146
[205][TOP]
>UniRef100_Q6DRM8 RNA polymerase I 140 kDa subunit n=1 Tax=Danio rerio
RepID=Q6DRM8_DANRE
Length = 343
Score = 74.7 bits (182), Expect = 3e-12
Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Frame = +2
Query: 35 ETMEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 214
+T + + + R++I+ ++ F++ DA+IANA RR++++EVPT+AI+ V I N
Sbjct: 35 DTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNN 94
Query: 215 SSVLNDEFIAHRLGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+S++ DE +AHRLGL+P+ + R R S D + + D ++ L+VKC
Sbjct: 95 TSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKC 143
[206][TOP]
>UniRef100_A2ATX2 Polymerase (RNA) I polypeptide C n=1 Tax=Danio rerio
RepID=A2ATX2_DANRE
Length = 197
Score = 74.7 bits (182), Expect = 3e-12
Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Frame = +2
Query: 35 ETMEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 214
+T + + + R++I+ ++ F++ DA+IANA RR++++EVPT+AI+ V I N
Sbjct: 54 DTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNN 113
Query: 215 SSVLNDEFIAHRLGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+S++ DE +AHRLGL+P+ + R R S D + + D ++ L+VKC
Sbjct: 114 TSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKC 162
[207][TOP]
>UniRef100_A2ATX1 Polymerase (RNA) I polypeptide C n=2 Tax=Danio rerio
RepID=A2ATX1_DANRE
Length = 362
Score = 74.7 bits (182), Expect = 3e-12
Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Frame = +2
Query: 35 ETMEGVSYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVN 214
+T + + + R++I+ ++ F++ DA+IANA RR++++EVPT+AI+ V I N
Sbjct: 54 DTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNN 113
Query: 215 SSVLNDEFIAHRLGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+S++ DE +AHRLGL+P+ + R R S D + + D ++ L+VKC
Sbjct: 114 TSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKC 162
[208][TOP]
>UniRef100_C6HA00 DNA-directed RNA polymerase I and III n=1 Tax=Ajellomyces
capsulatus H143 RepID=C6HA00_AJECH
Length = 380
Score = 74.7 bits (182), Expect = 3e-12
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Frame = +2
Query: 74 VKILXLKDDM--ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
+KI+ K++ A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AH
Sbjct: 52 LKIIYHKNEPYEASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAH 111
Query: 248 RLGLIPLT--TERAMAMRFSR---DCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
RLGL+PLT +E +R+ R + G ++ +V HL V+C + D
Sbjct: 112 RLGLVPLTGSSEGINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDD 171
[209][TOP]
>UniRef100_B2WCA1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Pyrenophora tritici-repentis Pt-1C-BFP
RepID=B2WCA1_PYRTR
Length = 376
Score = 74.7 bits (182), Expect = 3e-12
Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 4/95 (4%)
Frame = +2
Query: 104 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERA 283
A+F L D S+ANA RR+++SE+PT+AI+ V I N+S++ DE +AHRLGLIPL +RA
Sbjct: 62 AQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRA 121
Query: 284 MAMR---FSRDCDACDGD-GXCEFCSVXFHLRVKC 376
R +++ D +G G +V L+ KC
Sbjct: 122 TLRRMKWYAKPTDEDEGSGGPTSENTVALTLKTKC 156
[210][TOP]
>UniRef100_A3CWH9 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanoculleus
marisnigri JR1 RepID=A3CWH9_METMJ
Length = 276
Score = 74.7 bits (182), Expect = 3e-12
Identities = 43/95 (45%), Positives = 56/95 (58%)
Frame = +2
Query: 89 LKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 268
L + +A+F L S AN LRR MISEVPT+AI+ V I N+SVL DE +AHRLGLIPL
Sbjct: 8 LDERVAKFTLSGVSMSFANMLRRAMISEVPTLAIEDVRIYDNTSVLFDEMLAHRLGLIPL 67
Query: 269 TTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVK 373
T+ R+ + D C C+ + L V+
Sbjct: 68 RTD---LKRYKPRSECTCEDAGCPVCTATYTLSVE 99
[211][TOP]
>UniRef100_B0W725 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Culex
quinquefasciatus RepID=B0W725_CULQU
Length = 335
Score = 74.3 bits (181), Expect = 4e-12
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
+ R ++ ++ +++ F++ +IANA RR+M+SEVP++AI+ V I N+S++ DE
Sbjct: 40 FKRQLQIVVVRYEENELEFDMIGVSPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDE 99
Query: 236 FIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC--MTDXTLDVTXX 409
+AHRLGLIPL + + + + DA + E F L+VKC + +VT
Sbjct: 100 VLAHRLGLIPLKADPRLFEYKTNEGDAANAQDTLE-----FELKVKCTKKNKDSTEVTNN 154
Query: 410 DLYCSDHXV 436
D +H +
Sbjct: 155 DSMYKNHSI 163
[212][TOP]
>UniRef100_C0NBQ0 DNA-directed RNA polymerase I and III polypeptide n=1
Tax=Ajellomyces capsulatus G186AR RepID=C0NBQ0_AJECG
Length = 380
Score = 74.3 bits (181), Expect = 4e-12
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Frame = +2
Query: 104 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--TE 277
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT +E
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSE 123
Query: 278 RAMAMRFSR---DCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
+R+ R + G ++ +V HL V+C + D
Sbjct: 124 GINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDD 171
[213][TOP]
>UniRef100_A8N510 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N510_COPC7
Length = 356
Score = 74.3 bits (181), Expect = 4e-12
Identities = 44/102 (43%), Positives = 60/102 (58%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
+V+I L F+L DASIANA RR+MI+EVPTIAI+ V + N+SV+ DE +AHR
Sbjct: 47 KVQITRLSQHTIEFDLVGVDASIANAFRRIMIAEVPTIAIEHVYVWDNTSVIVDEVLAHR 106
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+GL+PL ++ S D D D ++ F L V C
Sbjct: 107 IGLVPLNVNPSIMDSRSPQNDPTDRD------TLIFKLDVTC 142
[214][TOP]
>UniRef100_A6R4R6 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Ajellomyces capsulatus NAm1 RepID=A6R4R6_AJECN
Length = 380
Score = 74.3 bits (181), Expect = 4e-12
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Frame = +2
Query: 104 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--TE 277
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT +E
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSE 123
Query: 278 RAMAMRFSR---DCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
+R+ R + G ++ +V HL V+C + D
Sbjct: 124 GINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDD 171
[215][TOP]
>UniRef100_B8D6F8 DNA-directed RNA polymerase subunit D n=1 Tax=Desulfurococcus
kamchatkensis 1221n RepID=B8D6F8_DESK1
Length = 280
Score = 74.3 bits (181), Expect = 4e-12
Identities = 48/125 (38%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+ IL + LRD + N+LRR ++SEVPT+A+D V I NSSV DE+I+HRL
Sbjct: 3 IDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRL 62
Query: 254 GLIPLTTERAM-AMRFSRDC-DACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSD 427
GLIPL + A+ + +C +A D + C V L L V DL SD
Sbjct: 63 GLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDLVSSD 122
Query: 428 HXVCP 442
V P
Sbjct: 123 PDVVP 127
[216][TOP]
>UniRef100_UPI000194C203 PREDICTED: polymerase (RNA) I polypeptide C, 30kDa n=1
Tax=Taeniopygia guttata RepID=UPI000194C203
Length = 346
Score = 73.9 bits (180), Expect = 5e-12
Identities = 38/103 (36%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV ++ ++D F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVIREEEDALEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R R D + + D ++ F L++KC
Sbjct: 110 LGLIPIRADPRLFEYRNQGDQEGTEID------TLQFQLKIKC 146
[217][TOP]
>UniRef100_B7R325 RNA polymerase Rpb3/Rpb11 dimerisation domain n=1 Tax=Thermococcus
sp. AM4 RepID=B7R325_9EURY
Length = 260
Score = 73.9 bits (180), Expect = 5e-12
Identities = 41/80 (51%), Positives = 50/80 (62%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+ +IL + D +F LR D ANALRR +++EVPT A+D VE N S L DE IAH
Sbjct: 3 PKFEILERRGDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 248 RLGLIPLTTERAMAMRFSRD 307
RL +IPLTT RFS D
Sbjct: 63 RLAMIPLTTP---VERFSLD 79
[218][TOP]
>UniRef100_C6LU00 DNA-directed RNA polymerase RPB3 n=1 Tax=Giardia intestinalis ATCC
50581 RepID=C6LU00_GIALA
Length = 326
Score = 73.6 bits (179), Expect = 7e-12
Identities = 47/118 (39%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P +KIL D E+R D S N LRR + ++VPT+AID+V+ NS+ L +EFIAH
Sbjct: 3 PSIKILSKTDLKLELEIRGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIAH 62
Query: 248 RLGLIPLTTERAM-AMRFSRDCD-ACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDL 415
RLGLIPL T + A+ + CD + C C+ L V T VT D+
Sbjct: 63 RLGLIPLRTAGPLSAISYWYTCDEEHSTEIECRECTFKGTLNVSNDTTKIRVVTDKDI 120
[219][TOP]
>UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2
Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO
Length = 346
Score = 73.6 bits (179), Expect = 7e-12
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
+K L + + FEL+ DA+I NALRR++ISEVPT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 61 LKFLSVSPERVVFELKGVDAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDEVLAHRL 120
Query: 254 GLIPLTTE 277
GLIP +
Sbjct: 121 GLIPFIVD 128
[220][TOP]
>UniRef100_A0D2I2 Chromosome undetermined scaffold_35, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D2I2_PARTE
Length = 316
Score = 73.6 bits (179), Expect = 7e-12
Identities = 43/107 (40%), Positives = 65/107 (60%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
+ R + IL D+ FE+ + DA IAN+LRR+MI+E+PT+AI V++ N+SV+ DE
Sbjct: 27 FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86
Query: 236 FIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+AHRLGLIP+ + ++F + D + E S+ F L KC
Sbjct: 87 VLAHRLGLIPIIAD---PLQF---VEKDDQEEYNELNSIDFTLYAKC 127
[221][TOP]
>UniRef100_Q7SHT0 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Neurospora crassa RepID=Q7SHT0_NEUCR
Length = 378
Score = 73.6 bits (179), Expect = 7e-12
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Frame = +2
Query: 104 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERA 283
A+F L DASIANA RR+MI+++PT+AI+ + + N+SV+ DE + HRLGLIP T +
Sbjct: 75 AQFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKE 134
Query: 284 MAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD---LYCSDH 430
F + G+ C++ +V L+VKC + + D LY + H
Sbjct: 135 GLHNFLKWYK--KGETPCDYNTVELELKVKCENNESAPADSKDPKELYHNAH 184
[222][TOP]
>UniRef100_C5A249 DNA-directed RNA polymerase subunit D (RpoD) n=1 Tax=Thermococcus
gammatolerans EJ3 RepID=C5A249_THEGJ
Length = 260
Score = 73.6 bits (179), Expect = 7e-12
Identities = 40/80 (50%), Positives = 50/80 (62%)
Frame = +2
Query: 68 PRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 247
P+ +I ++D +F LR D ANALRR +++EVPT A+D VE N S L DE IAH
Sbjct: 3 PKFEIFERREDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 248 RLGLIPLTTERAMAMRFSRD 307
RL +IPLTT RFS D
Sbjct: 63 RLAMIPLTTP---VERFSLD 79
[223][TOP]
>UniRef100_A3DMQ6 DNA-directed RNA polymerase, subunit D n=1 Tax=Staphylothermus
marinus F1 RepID=A3DMQ6_STAMF
Length = 280
Score = 73.6 bits (179), Expect = 7e-12
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Frame = +2
Query: 107 RFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTERAM 286
R ++D + N++RR +I+EVPT+AID V +NSSV DE+IAHRLGLIPLT+E A+
Sbjct: 14 RLYIKDIPLHVLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAAL 73
Query: 287 -AMRFSRDC-DACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDHXVCP 442
+ +C +A D E C V L K + + DL SD V P
Sbjct: 74 DKYKSPEECREAGDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSDPDVKP 127
[224][TOP]
>UniRef100_Q8PV16 DNA-directed RNA polymerase subunit D n=1 Tax=Methanosarcina mazei
RepID=RPOD_METMA
Length = 266
Score = 73.6 bits (179), Expect = 7e-12
Identities = 49/123 (39%), Positives = 65/123 (52%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
V IL L D A+F L + AN +RR MI++VPT+AI+ V + N+SVL DE +A RL
Sbjct: 5 VDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRL 64
Query: 254 GLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCSDHX 433
LIPL T+ M +C+ C G+G C C V L + V DL SD
Sbjct: 65 SLIPLVTDIETYMP-QAECEVCGGEG-CPACEVSLTL----SAEGPGTVYSRDLISSDPK 118
Query: 434 VCP 442
+ P
Sbjct: 119 IQP 121
[225][TOP]
>UniRef100_Q32L22 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Bos
taurus RepID=RPAC1_BOVIN
Length = 346
Score = 73.6 bits (179), Expect = 7e-12
Identities = 38/103 (36%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV ++ + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R R D +G E ++ F L+V+C
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------EGGTEIDTLQFRLQVRC 146
[226][TOP]
>UniRef100_A0D420 Chromosome undetermined scaffold_37, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D420_PARTE
Length = 316
Score = 73.2 bits (178), Expect = 9e-12
Identities = 43/107 (40%), Positives = 65/107 (60%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
+ R + IL D+ FE+ + DA IAN+LRR+MI+E+PT+AI V++ N+SV+ DE
Sbjct: 27 FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86
Query: 236 FIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+AHRLGLIP+ + ++F + D + E S+ F L KC
Sbjct: 87 VLAHRLGLIPIIAD---PLQF---IEKDDQEEYNELNSIDFTLVAKC 127
[227][TOP]
>UniRef100_UPI00003ACD10 PREDICTED: similar to RNA polymerase I subunit hRPA39 isoform 2 n=1
Tax=Gallus gallus RepID=UPI00003ACD10
Length = 346
Score = 72.8 bits (177), Expect = 1e-11
Identities = 38/103 (36%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV ++ +D + F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVREEDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R R D + + D ++ F L++KC
Sbjct: 110 LGLIPIRADPRLFEYRNQGDEEGTEID------TLQFQLKIKC 146
[228][TOP]
>UniRef100_UPI00016E11AB UPI00016E11AB related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AB
Length = 347
Score = 72.4 bits (176), Expect = 1e-11
Identities = 38/103 (36%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
++ ++ L + F++ DA+I NA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 47 QIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQDEVLAHR 106
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R R S D +A + +G E ++ L++ C
Sbjct: 107 LGLIPIKADPRLFEYRNSGD-EATENEG-SEIDTIQLQLKISC 147
[229][TOP]
>UniRef100_UPI00016E11AA UPI00016E11AA related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AA
Length = 351
Score = 72.4 bits (176), Expect = 1e-11
Identities = 38/103 (36%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
++ ++ L + F++ DA+I NA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 51 QIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQDEVLAHR 110
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R R S D +A + +G E ++ L++ C
Sbjct: 111 LGLIPIKADPRLFEYRNSGD-EATENEG-SEIDTIQLQLKISC 151
[230][TOP]
>UniRef100_O08521 Homologous to 40kD subunit of RNA-polymerase I and III (Fragment)
n=1 Tax=Cricetulus griseus RepID=O08521_CRIGR
Length = 347
Score = 72.4 bits (176), Expect = 1e-11
Identities = 37/102 (36%), Positives = 60/102 (58%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
+V I L + FE+ DASIANA RR++I+E+PT+A + V I N+S++ DE ++HR
Sbjct: 46 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 105
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+GL+P++ + M F + ++ +V F L KC
Sbjct: 106 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKC 146
[231][TOP]
>UniRef100_B4FAR4 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FAR4_MAIZE
Length = 372
Score = 72.4 bits (176), Expect = 1e-11
Identities = 41/102 (40%), Positives = 62/102 (60%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
+++I L +D F++ DASIANA RR++ISEVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 73 KIEINRLTEDYMEFDMIGIDASIANAFRRILISEVPTMAIEKVFMADNNSVIADEVLSHR 132
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIPL + + S + D E ++ + L V C
Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPNERNTIVYKLHVSC 168
[232][TOP]
>UniRef100_Q4N473 DNA-directed RNA polymerase I, putative n=1 Tax=Theileria parva
RepID=Q4N473_THEPA
Length = 303
Score = 72.4 bits (176), Expect = 1e-11
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
+VK L + + E+ D S+ANALRR++ISEVPT+A++ V+I N+ V+ DE +AHR
Sbjct: 34 QVKFLKKTPEFSVVEIVGLDVSLANALRRILISEVPTLAVETVQIYQNTGVIQDELLAHR 93
Query: 251 LGLIPLTTERAM---AMRFSRDCDACDGDGXCEFCSVXFHLRVK 373
LGLIP + + F +C+ + SV F L+VK
Sbjct: 94 LGLIPFAIDPDLFNFKSNFKTNCEEINDKN-----SVCFKLKVK 132
[233][TOP]
>UniRef100_B7Q825 Transferase, putative n=1 Tax=Ixodes scapularis RepID=B7Q825_IXOSC
Length = 344
Score = 72.4 bits (176), Expect = 1e-11
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Frame = +2
Query: 56 YARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 235
+ R ++ I+ L D F++ + +IANA+RR++++EVPT+A D V + N+S++ DE
Sbjct: 42 FERNFQIGIVSLDDMTMEFDMIGVNPAIANAIRRILLAEVPTMAPDKVFMYNNTSIVQDE 101
Query: 236 FIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTL--DVTXX 409
+AHR+GL+P + M +D + D +V F L+VKC + D T
Sbjct: 102 VLAHRIGLVPFNIDPRMFDYREKDSEGSPED------TVEFELKVKCTRNPQAPKDATTP 155
Query: 410 DLYCSDHXV 436
D DH V
Sbjct: 156 DELYKDHVV 164
[234][TOP]
>UniRef100_C5GBG6 DNA-directed RNA polymerase I and III polypeptide n=2
Tax=Ajellomyces dermatitidis RepID=C5GBG6_AJEDR
Length = 380
Score = 72.4 bits (176), Expect = 1e-11
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 5/96 (5%)
Frame = +2
Query: 104 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--TE 277
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGAAE 123
Query: 278 RAMAMRFSRDCDACDGDGXCEFC---SVXFHLRVKC 376
+R+ R D E ++ HL V+C
Sbjct: 124 GINWLRWFRQPTEGKPDSGSELSDSNTIVLHLSVEC 159
[235][TOP]
>UniRef100_B6GYD0 Pc12g12250 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GYD0_PENCW
Length = 374
Score = 72.4 bits (176), Expect = 1e-11
Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 9/118 (7%)
Frame = +2
Query: 104 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TTE 277
A F L DA++ANA RR++++E+PTIAI+ I N+SV+ DE +A RLGLIPL + E
Sbjct: 64 ASFSLIGLDAAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLASRLGLIPLKGSIE 123
Query: 278 RAMAMRFSRDCDACDG----DGXCEFCSVXFHLRVKCMTDXTLDVTXXD---LYCSDH 430
M + + DG DG C+F ++ HL V+C + D D LY + H
Sbjct: 124 GINWMHWFKKASE-DGSEEEDGPCDFNTIVLHLDVECYKNEYADKDEQDPRKLYTNAH 180
[236][TOP]
>UniRef100_Q8U0E4 DNA-directed RNA polymerase subunit D n=1 Tax=Pyrococcus furiosus
RepID=RPOD_PYRFU
Length = 261
Score = 72.4 bits (176), Expect = 1e-11
Identities = 37/67 (55%), Positives = 45/67 (67%)
Frame = +2
Query: 74 VKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 253
V+IL K+D +F L+ S ANALRR ++ EVPT A+D VE N S L DE IAHRL
Sbjct: 6 VQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 65
Query: 254 GLIPLTT 274
+IPLTT
Sbjct: 66 AMIPLTT 72
[237][TOP]
>UniRef100_O94616 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAC1_SCHPO
Length = 348
Score = 72.4 bits (176), Expect = 1e-11
Identities = 37/102 (36%), Positives = 60/102 (58%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
+V I L + FE+ DASIANA RR++I+E+PT+A + V I N+S++ DE ++HR
Sbjct: 47 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
+GL+P++ + M F + ++ +V F L KC
Sbjct: 107 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKC 147
[238][TOP]
>UniRef100_UPI00017936CF PREDICTED: similar to DNA-directed RNA polymerase n=1
Tax=Acyrthosiphon pisum RepID=UPI00017936CF
Length = 325
Score = 72.0 bits (175), Expect = 2e-11
Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
++ I+ D+ F+L D ++AN+LRRV+ISEVP++AI+ V I N+S + DE +AHR
Sbjct: 33 KINIISRSDNDLEFDLVGIDVAVANSLRRVIISEVPSMAIEKVHIYQNTSYILDEILAHR 92
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIPL + R M+ + + + D S+ + +++KC
Sbjct: 93 LGLIPLKADPRQFKMKEDENSEPNEHD------SLVYEMKIKC 129
[239][TOP]
>UniRef100_UPI00005A26F8 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 6 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F8
Length = 328
Score = 72.0 bits (175), Expect = 2e-11
Identities = 38/103 (36%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV ++ + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R R D D E ++ F L+V+C
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRC 146
[240][TOP]
>UniRef100_UPI00005A26F7 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 5 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F7
Length = 338
Score = 72.0 bits (175), Expect = 2e-11
Identities = 38/103 (36%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV ++ + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R R D D E ++ F L+V+C
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRC 146
[241][TOP]
>UniRef100_UPI00005A26F6 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 4 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F6
Length = 296
Score = 72.0 bits (175), Expect = 2e-11
Identities = 38/103 (36%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV ++ + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R R D D E ++ F L+V+C
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRC 146
[242][TOP]
>UniRef100_UPI00005A26F4 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 2 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F4
Length = 281
Score = 72.0 bits (175), Expect = 2e-11
Identities = 38/103 (36%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV ++ + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R R D D E ++ F L+V+C
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRC 146
[243][TOP]
>UniRef100_UPI00004A557E PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 1 n=1 Tax=Canis
lupus familiaris RepID=UPI00004A557E
Length = 346
Score = 72.0 bits (175), Expect = 2e-11
Identities = 38/103 (36%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV ++ + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 251 LGLIPLTTE-RAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R R D D E ++ F L+V+C
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRC 146
[244][TOP]
>UniRef100_C1BKA8 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BKA8_OSMMO
Length = 351
Score = 72.0 bits (175), Expect = 2e-11
Identities = 36/102 (35%), Positives = 64/102 (62%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
R+ I+ + + F++ DA+IANA RR+M++EVPT+A++ V I N+S++ DE +AHR
Sbjct: 51 RIDIVEMDETTMEFDMVGIDAAIANAFRRIMLAEVPTMAVEKVYIYNNTSIIQDEILAHR 110
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + + + + + +G E ++ L++KC
Sbjct: 111 LGLIPIKADPRLFEYRNIGEEGGEEEG-TEIDTIQLQLKIKC 151
[245][TOP]
>UniRef100_C6TAS0 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6TAS0_SOYBN
Length = 388
Score = 72.0 bits (175), Expect = 2e-11
Identities = 44/108 (40%), Positives = 65/108 (60%)
Frame = +2
Query: 53 SYARMPRVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 232
S+ +V++ L D F++ D +IANA RR++I+EVPT+AI+ V I N+SV+ D
Sbjct: 76 SFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQD 135
Query: 233 EFIAHRLGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
E ++HRLGLIP+ RA F +A GD E ++ F L V+C
Sbjct: 136 EVLSHRLGLIPI---RADPRLFEYPENA--GDDKNEKNTIVFKLHVRC 178
[246][TOP]
>UniRef100_A9T5P0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9T5P0_PHYPA
Length = 360
Score = 72.0 bits (175), Expect = 2e-11
Identities = 33/69 (47%), Positives = 52/69 (75%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
RV+I+ + ++ F++ DA+IANA RR++I+EVPT+AI+ V I N+SV+ DE +AHR
Sbjct: 62 RVEIISMNEEDIEFDIVGIDAAIANAFRRILIAEVPTMAIEKVYIANNTSVIQDEVLAHR 121
Query: 251 LGLIPLTTE 277
LGL+P+ +
Sbjct: 122 LGLLPIKAD 130
[247][TOP]
>UniRef100_Q5KIG6 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q5KIG6_CRYNE
Length = 350
Score = 72.0 bits (175), Expect = 2e-11
Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Frame = +2
Query: 110 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTE-RAM 286
F+L DASIANALRR +I+EVPT+AI+ V + N+S++ DE + HR+GL+PL + R++
Sbjct: 61 FDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDPRSL 120
Query: 287 AMRFSRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXD 412
R S + + D +V F LRV+C +D + D
Sbjct: 121 RYRPSANSQPHEHD------TVVFDLRVRCDRRPNVDRSETD 156
[248][TOP]
>UniRef100_A4R0T4 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4R0T4_MAGGR
Length = 373
Score = 72.0 bits (175), Expect = 2e-11
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Frame = +2
Query: 101 MARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTTER 280
+A F L DASIANA RR+MI+E+P++AI+ V I N+SV+ DE +A RLGL+PL +
Sbjct: 64 LASFSLIGVDASIANAFRRIMIAEIPSLAIERVFITNNTSVIQDEVLAQRLGLVPLKGSK 123
Query: 281 AMAMRFSRDCDACDG---DGXCEFCSVXFHLRVKC 376
+F + + D +F +V L VKC
Sbjct: 124 EGLRKFMKPFKRTETGGFDNSFDFNTVNLRLNVKC 158
[249][TOP]
>UniRef100_Q54SN4 DNA-directed RNA polymerases I and III subunit rpac1 n=1
Tax=Dictyostelium discoideum RepID=RPAC1_DICDI
Length = 345
Score = 72.0 bits (175), Expect = 2e-11
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
++ IL + FE+ DA IANALRR+MISE+PT+AI+ V I N+S+L DE +AHR
Sbjct: 60 KINILSESANELVFEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHR 119
Query: 251 LGLIPLTTE-RAMAMRF-SRDCDACDGDGXCEFCSVXFHLRVKCMTDXTLDVTXXDLYCS 424
LG+IP+ + R + +++ A D ++ F L+VKC D + S
Sbjct: 120 LGMIPIKVDPRKFNFKLPNKEYTAED--------TLIFQLKVKCEKDSVTGKIINETALS 171
Query: 425 DHXV 436
H +
Sbjct: 172 KHLI 175
[250][TOP]
>UniRef100_B5X7Z3 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Salmo
salar RepID=B5X7Z3_SALSA
Length = 353
Score = 71.6 bits (174), Expect = 3e-11
Identities = 37/102 (36%), Positives = 64/102 (62%)
Frame = +2
Query: 71 RVKILXLKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250
R+ ++ + + F++ DA+IANA RR++++EVPT+A++ V I N+S++ DE +AHR
Sbjct: 57 RIDVVQMDETSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLIYNNTSIIQDEILAHR 116
Query: 251 LGLIPLTTERAMAMRFSRDCDACDGDGXCEFCSVXFHLRVKC 376
LGLIP+ + R +A D +G E ++ L++KC
Sbjct: 117 LGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKC 153