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[1][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 293 bits (751), Expect = 3e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM
Sbjct: 118 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF
Sbjct: 178 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
YLENNQHQVTLPFFPFHNRLVN
Sbjct: 238 YLENNQHQVTLPFFPFHNRLVN 259
[2][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 290 bits (742), Expect = 3e-77
Identities = 139/142 (97%), Positives = 142/142 (100%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPP+VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM
Sbjct: 118 ARDIILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
YLENNQHQVTLPFFPFHNRLVN
Sbjct: 238 YLENNQHQVTLPFFPFHNRLVN 259
[3][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 287 bits (735), Expect = 2e-76
Identities = 138/142 (97%), Positives = 141/142 (99%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPP+VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM
Sbjct: 118 ARDIILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEET
Sbjct: 178 PVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETV 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
YLENNQHQVTLPFFPFHNRLVN
Sbjct: 238 YLENNQHQVTLPFFPFHNRLVN 259
[4][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 286 bits (732), Expect = 5e-76
Identities = 137/142 (96%), Positives = 141/142 (99%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM
Sbjct: 118 AQDIILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
YLENNQHQVTLP FPFHNRLVN
Sbjct: 238 YLENNQHQVTLPLFPFHNRLVN 259
[5][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 285 bits (729), Expect = 1e-75
Identities = 137/142 (96%), Positives = 140/142 (98%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPP+VEIIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFM
Sbjct: 118 ARDIILPPSVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
YLENNQHQVTLP FPFHNRLVN
Sbjct: 238 YLENNQHQVTLPLFPFHNRLVN 259
[6][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 285 bits (729), Expect = 1e-75
Identities = 137/142 (96%), Positives = 140/142 (98%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPP+VEIIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFM
Sbjct: 118 ARDIILPPSVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
YLENNQHQVTLP FPFHNRLVN
Sbjct: 238 YLENNQHQVTLPLFPFHNRLVN 259
[7][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 281 bits (719), Expect = 2e-74
Identities = 135/142 (95%), Positives = 139/142 (97%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEIIDNTQHIATL EPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFM
Sbjct: 118 AQDIILPPSVEIIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
YLENNQHQVTLP FPFHNRLVN
Sbjct: 238 YLENNQHQVTLPLFPFHNRLVN 259
[8][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 280 bits (715), Expect = 5e-74
Identities = 133/142 (93%), Positives = 138/142 (97%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPP+VEI+DNTQHIATLTEPIDLCI LKIERNRGYSLK+SNN EDRSYPIDAVFM
Sbjct: 118 ARDIILPPSVEIVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
YLENNQHQVTLPFFPFHNR N
Sbjct: 238 YLENNQHQVTLPFFPFHNRFFN 259
[9][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 278 bits (711), Expect = 1e-73
Identities = 132/142 (92%), Positives = 140/142 (98%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPP+VEI+DNTQHIATLTEPI+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFM
Sbjct: 118 ARDIILPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
YLENNQHQVTLP FPFHN+LVN
Sbjct: 238 YLENNQHQVTLPVFPFHNKLVN 259
[10][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 276 bits (705), Expect = 7e-73
Identities = 132/142 (92%), Positives = 138/142 (97%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPP+VEI+DNTQHIAT+TE IDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFM
Sbjct: 118 ARDIILPPSVEIVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+LENNQHQVTLP FPFHNRLVN
Sbjct: 238 HLENNQHQVTLPLFPFHNRLVN 259
[11][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 271 bits (693), Expect = 2e-71
Identities = 131/142 (92%), Positives = 135/142 (95%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPP+VEIIDNTQHIATLTE IDLCI LKIERNRGYSLK+ N FEDRSYPIDAVFM
Sbjct: 118 ARDIILPPSVEIIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
YLENNQH VTLP FPFHNRLVN
Sbjct: 238 YLENNQHHVTLPLFPFHNRLVN 259
[12][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 268 bits (686), Expect = 1e-70
Identities = 128/141 (90%), Positives = 136/141 (96%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPP+VEIIDNTQHIATLTEPIDLCI L+IERNRGYSLKM N+FED SYPIDA+FM
Sbjct: 118 ARDIILPPSVEIIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYG GNEKQEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLV 6
YLENNQH+VTLP FPFHNRLV
Sbjct: 238 YLENNQHKVTLPLFPFHNRLV 258
[13][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 259 bits (663), Expect = 5e-68
Identities = 124/141 (87%), Positives = 133/141 (94%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDIILPP+VEI+DNTQHIATLTEPIDLCI L+IERNRGYSLKM N FED SYPIDA+FM
Sbjct: 118 ARDIILPPSVEIMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYG GNE QEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETF
Sbjct: 178 PVQNANHSIHSYGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETF 237
Query: 68 YLENNQHQVTLPFFPFHNRLV 6
YLENN+ +VTLP FPFHNRLV
Sbjct: 238 YLENNEDKVTLPLFPFHNRLV 258
[14][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 253 bits (647), Expect = 4e-66
Identities = 119/140 (85%), Positives = 131/140 (93%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DI+LPP+VEI+DNTQHIA+LTEPIDL I L+IERNRGY +K NNF+D SYPIDAVFM
Sbjct: 118 AQDIVLPPSVEIVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSYG GNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLH EEE F
Sbjct: 178 PVQNANHSIHSYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKF 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
YLENNQH+VTLPFFPFH+RL
Sbjct: 238 YLENNQHKVTLPFFPFHDRL 257
[15][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 247 bits (631), Expect = 3e-64
Identities = 116/141 (82%), Positives = 127/141 (90%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DNTQH+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFM
Sbjct: 120 AQDIILPPSVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFM 179
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIH YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 180 PVRNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENL 239
Query: 68 YLENNQHQVTLPFFPFHNRLV 6
+LENNQH VTLPFFPFH+RLV
Sbjct: 240 HLENNQHDVTLPFFPFHDRLV 260
[16][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 246 bits (629), Expect = 4e-64
Identities = 115/140 (82%), Positives = 128/140 (91%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DNTQHIA+LTEPIDLCI L+IERNRGY +K NNF D SYPID VFM
Sbjct: 120 AQDIILPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFM 179
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 180 PVRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENS 239
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LEN+QH+VTLPFFPFH++L
Sbjct: 240 HLENSQHKVTLPFFPFHDKL 259
[17][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 241 bits (614), Expect = 2e-62
Identities = 115/140 (82%), Positives = 126/140 (90%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEIIDNTQHIA+LTE IDLCI L+IERNRGY +K +NNF+D SYPIDAVFM
Sbjct: 118 AQDIILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LE NQH+VTLP F FH RL
Sbjct: 238 HLEINQHKVTLPLFTFHGRL 257
[18][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 238 bits (608), Expect = 1e-61
Identities = 113/140 (80%), Positives = 127/140 (90%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILP +VEI+DNTQ+IA LTEPI+LCI L+IERNRGY +K NF+D SYPIDAVFM
Sbjct: 118 AQDIILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LENNQ++VTLPFF FH+RL
Sbjct: 238 HLENNQYKVTLPFFTFHDRL 257
[19][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 236 bits (603), Expect = 5e-61
Identities = 113/140 (80%), Positives = 125/140 (89%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+DNTQHIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFM
Sbjct: 112 AQDIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFM 171
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET
Sbjct: 172 PVRNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETL 231
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LE NQH+ TLP FH+RL
Sbjct: 232 HLEYNQHKSTLPPLTFHDRL 251
[20][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 236 bits (603), Expect = 5e-61
Identities = 113/140 (80%), Positives = 125/140 (89%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+DNTQHIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFM
Sbjct: 118 AQDIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET
Sbjct: 178 PVRNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LE NQH+ TLP FH+RL
Sbjct: 238 HLEYNQHKSTLPPLTFHDRL 257
[21][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 236 bits (601), Expect = 8e-61
Identities = 112/140 (80%), Positives = 126/140 (90%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEIIDNTQHIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFM
Sbjct: 118 AQDIILPPSVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE+F
Sbjct: 178 PVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESF 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LE NQH++TLP F FH+RL
Sbjct: 238 HLEKNQHKITLPLFAFHDRL 257
[22][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 235 bits (600), Expect = 1e-60
Identities = 112/140 (80%), Positives = 125/140 (89%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEIIDNTQHIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFM
Sbjct: 118 AQDIILPPSVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE F
Sbjct: 178 PVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENF 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LE NQH++TLP F FH+RL
Sbjct: 238 HLEKNQHKITLPLFAFHDRL 257
[23][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 234 bits (596), Expect = 3e-60
Identities = 110/140 (78%), Positives = 124/140 (88%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DNTQHIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FM
Sbjct: 118 AQDIILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F
Sbjct: 178 PVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNF 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LENNQH+VTLP F FH+ L
Sbjct: 238 NLENNQHKVTLPLFTFHDIL 257
[24][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 234 bits (596), Expect = 3e-60
Identities = 111/141 (78%), Positives = 124/141 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DNTQHIA LTEPI+LC+ELK+ERNRGY +K NN +D SY IDAVFM
Sbjct: 118 AQDIILPPSVEIVDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL +ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKL 237
Query: 68 YLENNQHQVTLPFFPFHNRLV 6
LENNQ +VTLP F FH+R V
Sbjct: 238 NLENNQQKVTLPLFTFHDRFV 258
[25][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 234 bits (596), Expect = 3e-60
Identities = 110/140 (78%), Positives = 124/140 (88%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DNTQHIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FM
Sbjct: 118 AQDIILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F
Sbjct: 178 PVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNF 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LENNQH+VTLP F FH+ L
Sbjct: 238 NLENNQHKVTLPLFTFHDIL 257
[26][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 234 bits (596), Expect = 3e-60
Identities = 111/140 (79%), Positives = 123/140 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VE +DNTQHIA LTEPID CIEL+IERNRGY +K NN +D SYPIDAVFM
Sbjct: 118 AQDIISPPSVETVDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH +EE
Sbjct: 178 PVRNANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENI 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LE+NQ+ VTLPFF FH+RL
Sbjct: 238 LLEDNQNGVTLPFFTFHDRL 257
[27][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 233 bits (594), Expect = 5e-60
Identities = 113/142 (79%), Positives = 124/142 (87%), Gaps = 1/142 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DNTQH+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFM
Sbjct: 120 AQDIILPPSVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFM 179
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIH YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFI FLH +EE
Sbjct: 180 PVRNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENL 239
Query: 68 YLENNQHQVTLP-FFPFHNRLV 6
+LENNQH VTL FFPFH RLV
Sbjct: 240 HLENNQHDVTLHFFFPFHYRLV 261
[28][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 233 bits (593), Expect = 7e-60
Identities = 110/140 (78%), Positives = 125/140 (89%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFM
Sbjct: 118 AQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
YL++NQH V L F FH++L
Sbjct: 238 YLQDNQHTVPLSPFTFHDKL 257
[29][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 232 bits (592), Expect = 9e-60
Identities = 111/141 (78%), Positives = 124/141 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DNTQHIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFM
Sbjct: 118 AQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENL 237
Query: 68 YLENNQHQVTLPFFPFHNRLV 6
ENNQH+VTLP F FH+RL+
Sbjct: 238 NFENNQHKVTLPLFTFHDRLL 258
[30][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 232 bits (592), Expect = 9e-60
Identities = 110/140 (78%), Positives = 124/140 (88%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTEPID CI L+IERNRGY +K NF+D SYPIDAVFM
Sbjct: 118 AQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
YL++NQH V L F FH++L
Sbjct: 238 YLQDNQHTVPLSPFTFHDKL 257
[31][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 231 bits (589), Expect = 2e-59
Identities = 109/140 (77%), Positives = 124/140 (88%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFM
Sbjct: 118 AQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
YL++NQH V L F FH++L
Sbjct: 238 YLQDNQHTVPLSPFTFHDKL 257
[32][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 231 bits (589), Expect = 2e-59
Identities = 109/140 (77%), Positives = 124/140 (88%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFM
Sbjct: 118 AQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
YL++NQH V L F FH++L
Sbjct: 238 YLQDNQHTVPLSPFTFHDKL 257
[33][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 229 bits (585), Expect = 6e-59
Identities = 110/140 (78%), Positives = 126/140 (90%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA+LTEPIDLCIEL+IERNRGY +K NN ++RSYPIDAVFM
Sbjct: 118 AQDIISPPSVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWT+GSLTPKEAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDT 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LE+NQ +VTLPFF FH+ L
Sbjct: 238 KLEDNQSRVTLPFFTFHDGL 257
[34][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 229 bits (585), Expect = 6e-59
Identities = 112/141 (79%), Positives = 123/141 (87%), Gaps = 1/141 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVF 252
A+DII PP VEI+DNTQHIA+L EPIDLCI L+IERNRGY +K +NNF+D SYPIDAVF
Sbjct: 118 AQDIISPPYVEIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVF 177
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
MPV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH EEE
Sbjct: 178 MPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEEN 237
Query: 71 FYLENNQHQVTLPFFPFHNRL 9
+L +NQH V LP F FH +L
Sbjct: 238 LHLADNQHTVPLPPFTFHEKL 258
[35][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 229 bits (585), Expect = 6e-59
Identities = 109/142 (76%), Positives = 125/142 (88%), Gaps = 2/142 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DNTQHIA L EPI+LCIELKIERNRGY ++ NNF+D SYP+DA+FM
Sbjct: 118 AQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE--E 75
PV N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE E
Sbjct: 178 PVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKE 237
Query: 74 TFYLENNQHQVTLPFFPFHNRL 9
F+L+NN+ +VTLP F FH +L
Sbjct: 238 NFHLKNNKKKVTLPLFTFHEKL 259
[36][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 229 bits (584), Expect = 7e-59
Identities = 108/140 (77%), Positives = 122/140 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DI+LPP+VEIIDNTQHIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFM
Sbjct: 118 AQDILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+L NN++ VT P F FH +L
Sbjct: 238 HLGNNKYNVTFPLFTFHKKL 257
[37][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 229 bits (583), Expect = 1e-58
Identities = 108/140 (77%), Positives = 124/140 (88%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTE ID CI L+I+RNRGY +K +NF+D SYPIDAVFM
Sbjct: 118 AQDIILPPYVEIVDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
YL++NQH V L F FH++L
Sbjct: 238 YLQDNQHTVPLSPFTFHDKL 257
[38][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 229 bits (583), Expect = 1e-58
Identities = 110/141 (78%), Positives = 125/141 (88%), Gaps = 1/141 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVF 252
A+DIILPP VE++DNTQHIA+LTEPI+LCI L+IERNRGY +K +NN +D SYPIDAVF
Sbjct: 118 AQDIILPPYVEVVDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVF 177
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
MPV NANHSIHSYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 178 MPVRNANHSIHSYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEEN 237
Query: 71 FYLENNQHQVTLPFFPFHNRL 9
+L NNQH V LP F FH++L
Sbjct: 238 LHLANNQHMVPLPPFTFHDKL 258
[39][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 229 bits (583), Expect = 1e-58
Identities = 109/140 (77%), Positives = 123/140 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEIID TQHIA+LTEPIDLCI L+IERNRGY++K N +D YPIDAVFM
Sbjct: 118 AQDIISPPSVEIIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE F
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENF 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
L++NQ++V LP F FH+RL
Sbjct: 238 ILKDNQNKVALPLFTFHDRL 257
[40][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 228 bits (582), Expect = 1e-58
Identities = 111/140 (79%), Positives = 122/140 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DNTQHIA LTEPI LCIEL+IERNRGY +K NNF++ SYPIDAVFM
Sbjct: 118 AQDIILPPSVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSY NGNE QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPF H EE
Sbjct: 178 PVRNANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE--- 234
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LENNQH+ TLP F FH RL
Sbjct: 235 HLENNQHKGTLPLFNFHGRL 254
[41][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 228 bits (581), Expect = 2e-58
Identities = 110/140 (78%), Positives = 123/140 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTEPIDLCI L+I+RNRGY +KM +NF+D SYPIDAVFM
Sbjct: 92 AQDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFM 151
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEE
Sbjct: 152 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENL 211
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LE+NQH V L FH++L
Sbjct: 212 PLEDNQHTVPLSPLTFHDKL 231
[42][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 228 bits (581), Expect = 2e-58
Identities = 109/140 (77%), Positives = 124/140 (88%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTEPIDLCI L++ERNRGY +K NNF+D S+PIDA+FM
Sbjct: 118 AQDIILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH EE
Sbjct: 178 PVRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEENV- 236
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LE+NQH+V+LP F FHNRL
Sbjct: 237 NLEDNQHKVSLPLFTFHNRL 256
[43][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 228 bits (580), Expect = 2e-58
Identities = 108/140 (77%), Positives = 123/140 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA+LTEP DLCI L+IERNRGY +K N ++ SYPIDAVFM
Sbjct: 118 AKDIISPPSVEIVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDI 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LE+NQ++VTLPFF FH+ L
Sbjct: 238 ILEDNQNRVTLPFFTFHDGL 257
[44][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 227 bits (579), Expect = 3e-58
Identities = 108/140 (77%), Positives = 122/140 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DIILPP+VEI+DNTQHIA LTEPID CI L+IERNRGY LK +NFED SYPIDAVFM
Sbjct: 118 AEDIILPPSVEIVDNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LE+ +H + L FH+++
Sbjct: 238 HLEDGEHTIPLSPLSFHDKV 257
[45][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 227 bits (578), Expect = 4e-58
Identities = 107/140 (76%), Positives = 121/140 (86%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DI+LPP+VEIIDNTQHIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFM
Sbjct: 118 AQDILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+L N++ VT P F FH +L
Sbjct: 238 HLGKNKYNVTFPLFTFHKKL 257
[46][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 227 bits (578), Expect = 4e-58
Identities = 108/140 (77%), Positives = 123/140 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DI+LPP VEI+DNTQHIA L EPI+LCI L+IERNRGY +K NF+D SYPIDAVFM
Sbjct: 118 AQDIVLPPYVEIVDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
P+ NAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH+EE+
Sbjct: 178 PIRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNS 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LENNQH V L F FH++L
Sbjct: 238 HLENNQHTVPLAPFFFHDKL 257
[47][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 226 bits (577), Expect = 5e-58
Identities = 107/142 (75%), Positives = 124/142 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV M
Sbjct: 118 AQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRNANHSIHSYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
LE+N ++ T+P F FH+RL N
Sbjct: 238 VLEDNPNRFTVPLFTFHDRLAN 259
[48][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 225 bits (574), Expect = 1e-57
Identities = 107/141 (75%), Positives = 123/141 (87%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP VEI+D TQHIA LTEPIDL IEL++ERNRGY +K NNF+D SYPID VFM
Sbjct: 118 AQDIISPPYVEIVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFL+ E+E F
Sbjct: 178 PVRNVNHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENF 237
Query: 68 YLENNQHQVTLPFFPFHNRLV 6
+LE+NQ +VTLP F FH+RL+
Sbjct: 238 HLEDNQDRVTLPLFLFHDRLI 258
[49][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 224 bits (571), Expect = 2e-57
Identities = 111/144 (77%), Positives = 125/144 (86%), Gaps = 4/144 (2%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFE--DRSYPIDAV 255
A+DIILPP VEIIDNTQHIA+LT+ IDLCI L+IERNRGY +K +NNF+ D SY IDAV
Sbjct: 118 AQDIILPPFVEIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAV 177
Query: 254 FMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
FMPV NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+ FIPFLH EEE
Sbjct: 178 FMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEE 237
Query: 74 TFYL--ENNQHQVTLPFFPFHNRL 9
+L E NQH+VTLP F FH++L
Sbjct: 238 NLHLEIEKNQHKVTLPLFCFHDKL 261
[50][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 224 bits (570), Expect = 3e-57
Identities = 106/142 (74%), Positives = 121/142 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA LTEPIDLCI L+IER+RGY LK NN++D SYPID VFM
Sbjct: 118 AQDIISPPSVEIVDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNG EKQEILFLEIWTNGSLTPKEAL++ASRNLINLFIPFLH EE+
Sbjct: 178 PVRNANHSIHSYGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
LE++++ T+P F FHN L N
Sbjct: 238 LLEDSENISTVPLFTFHNELAN 259
[51][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 223 bits (569), Expect = 4e-57
Identities = 108/141 (76%), Positives = 126/141 (89%), Gaps = 1/141 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS-YPIDAVF 252
A+DI+LPP+VEI+DNTQHIA+LTEPIDL I L+IER+RGY++K N F+D + YPIDAVF
Sbjct: 118 AQDILLPPSVEIVDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVF 177
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
MPV NANHSI SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASR+LI+LFIPFL E+E
Sbjct: 178 MPVRNANHSIQSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDEN 237
Query: 71 FYLENNQHQVTLPFFPFHNRL 9
LENNQ++VTLPFF FH+RL
Sbjct: 238 LPLENNQYKVTLPFFTFHDRL 258
[52][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 223 bits (568), Expect = 5e-57
Identities = 105/142 (73%), Positives = 122/142 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA LTEP+DLCIELKIER RGY ++ NN++D SYPIDAV M
Sbjct: 118 AQDIISPPSVEIVDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+E+N + T+PFF FH+ L N
Sbjct: 238 NIEDNLKRATVPFFTFHDGLDN 259
[53][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 223 bits (568), Expect = 5e-57
Identities = 106/141 (75%), Positives = 121/141 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DN QHIA +TEP+ LCIELKIERNRGY +K NF+D SY IDA FM
Sbjct: 118 AQDIILPPSVEIVDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SIHSY NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI LFIPFLH EE+ F
Sbjct: 178 PVRNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNF 237
Query: 68 YLENNQHQVTLPFFPFHNRLV 6
+LE NQH+VTLP F FH+ LV
Sbjct: 238 HLEKNQHKVTLPLFTFHDILV 258
[54][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 223 bits (568), Expect = 5e-57
Identities = 105/142 (73%), Positives = 123/142 (86%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA+LTEPIDLCIEL+I+R+RGY +K N +++ SYPIDAV M
Sbjct: 118 AQDIISPPSVEIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
LE+N ++ +PFF FH+ L N
Sbjct: 238 RLEDNPNRFNIPFFTFHDGLAN 259
[55][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 221 bits (562), Expect = 3e-56
Identities = 106/142 (74%), Positives = 120/142 (84%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP VEI+D TQHIA LTEPIDLCIEL+I+R+RGY +K +NN +D SYPIDAV M
Sbjct: 118 AQDIISPPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ LP F F NRL N
Sbjct: 238 NFEENKNRFPLPLFTFQNRLTN 259
[56][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 220 bits (561), Expect = 3e-56
Identities = 107/139 (76%), Positives = 120/139 (86%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTEPIDLCI L+IERNRGY +KM +N +D SYPIDAVFM
Sbjct: 118 AQDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYG+GNEK EILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEET
Sbjct: 178 PVRNANHSIHSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETS 237
Query: 68 YLENNQHQVTLPFFPFHNR 12
LE+N H V L FH++
Sbjct: 238 PLEDNHHTVPLSPLTFHDK 256
[57][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 220 bits (560), Expect = 4e-56
Identities = 105/142 (73%), Positives = 123/142 (86%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DIILP +VEI+D TQHIATLTEP+DL I L+I+R+RGY ++ +NN +D SYPIDAVFM
Sbjct: 118 AEDIILPASVEIVDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSI+SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRNANHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
LE N+ + TLP F FH++LVN
Sbjct: 238 NLEENKSRFTLPLFTFHDKLVN 259
[58][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 220 bits (560), Expect = 4e-56
Identities = 105/141 (74%), Positives = 121/141 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+DN QHIA +TEP++LCIELKIERNRGY +K NF+D SY IDA FM
Sbjct: 118 AQDIILPPSVEIVDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SIHSY NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI+LFIPFLH EEE F
Sbjct: 178 PVRNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENF 237
Query: 68 YLENNQHQVTLPFFPFHNRLV 6
LE +H+VTLP F FH+ LV
Sbjct: 238 NLEKKKHKVTLPLFTFHDILV 258
[59][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 219 bits (558), Expect = 8e-56
Identities = 102/142 (71%), Positives = 123/142 (86%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+V+I+D TQ+IA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV M
Sbjct: 118 AQDIISPPSVKIVDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGS TPKEAL++ASRNLI+LF+PFLH EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+E+NQ++ T P F FH+ L N
Sbjct: 238 NVEDNQNRATAPLFTFHDGLTN 259
[60][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 219 bits (557), Expect = 1e-55
Identities = 108/143 (75%), Positives = 123/143 (86%), Gaps = 2/143 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDA--V 255
ARDIILPP+VEI+DNTQHIA LTEPI+LCIEL+IER RGY K +N +D SY ID V
Sbjct: 118 ARDIILPPSVEIVDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPV 177
Query: 254 FMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
FMPV +AN+SIHSY N NEKQEILFLEIWTNGSLTPKEAL++A+RNLI+LFIPFLH EEE
Sbjct: 178 FMPVIHANYSIHSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEE 237
Query: 74 TFYLENNQHQVTLPFFPFHNRLV 6
F+ ENNQH+VTLP F FH+RLV
Sbjct: 238 NFHFENNQHKVTLPLFAFHDRLV 260
[61][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 219 bits (557), Expect = 1e-55
Identities = 106/138 (76%), Positives = 120/138 (86%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILP +VE+IDNTQHIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFM
Sbjct: 118 AQDIILP-SVEVIDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFM 176
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 177 PVRNANHSIHSYVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENL 236
Query: 68 YLENNQHQVTLPFFPFHN 15
ENNQH++TLP F FH+
Sbjct: 237 NFENNQHKMTLPLFTFHD 254
[62][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 218 bits (554), Expect = 2e-55
Identities = 105/142 (73%), Positives = 122/142 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D TQHIA LTEPIDL IEL+I+R+RGY ++ +NN +D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ TLPF F +RL N
Sbjct: 238 NFEENKNRFTLPFLTFQDRLTN 259
[63][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 218 bits (554), Expect = 2e-55
Identities = 107/143 (74%), Positives = 124/143 (86%), Gaps = 3/143 (2%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVF 252
A+DIILPP VE++DNTQHIA+LTEPI+L I L+IER+RGY +K +NNF+D SYPIDAVF
Sbjct: 118 AQDIILPPYVEVVDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVF 177
Query: 251 MPVENANHSIHSYGNGN--EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
MP+ NANHSIHSYGNGN +KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE
Sbjct: 178 MPIRNANHSIHSYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEE 237
Query: 77 ETFYLENNQHQVTLPFFPFHNRL 9
E +L +NQH V LP F FH+ L
Sbjct: 238 ENLHLADNQHMVPLPPFTFHDNL 260
[64][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 217 bits (552), Expect = 4e-55
Identities = 103/142 (72%), Positives = 121/142 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VE++D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV M
Sbjct: 118 AQDIISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E NQ++ T+P F F +RL N
Sbjct: 238 NFEENQNRFTVPPFTFPDRLAN 259
[65][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 217 bits (552), Expect = 4e-55
Identities = 103/142 (72%), Positives = 121/142 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VE++D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV M
Sbjct: 118 AQDIISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E NQ++ T+P F F +RL N
Sbjct: 238 NFEENQNRFTVPPFTFPDRLAN 259
[66][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 216 bits (551), Expect = 5e-55
Identities = 105/144 (72%), Positives = 125/144 (86%), Gaps = 2/144 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA+LTEPI+LCIEL+IER+RGY +K NN++D SYPIDAV M
Sbjct: 118 AQDIISPPSVEIVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYG+GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRNANHSIHSYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDI 237
Query: 68 Y--LENNQHQVTLPFFPFHNRLVN 3
+ LE+NQ++ T+ F H+RL N
Sbjct: 238 HLNLEDNQNRFTVSPFTLHDRLGN 261
[67][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 216 bits (550), Expect = 6e-55
Identities = 104/142 (73%), Positives = 120/142 (84%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA LTEPIDL IEL+I+R+RGY + +NN +D SYPIDAV M
Sbjct: 116 AQDIISPPSVEIVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSM 175
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE
Sbjct: 176 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDI 235
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ E N+++ TLP F F NRL N
Sbjct: 236 HFEENKNRFTLPLFTFQNRLTN 257
[68][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 215 bits (547), Expect = 1e-54
Identities = 101/138 (73%), Positives = 120/138 (86%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D TQHIA LTE +DLCI+L+IER+RGYS+K +N ED SYPIDA+FM
Sbjct: 118 AQDIILPPSVEIVDATQHIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHS+HSYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE
Sbjct: 178 PVRNANHSVHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREI 237
Query: 68 YLENNQHQVTLPFFPFHN 15
+LE+N + V L F FH+
Sbjct: 238 HLEDNANGVPLALFTFHD 255
[69][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 213 bits (543), Expect = 4e-54
Identities = 106/140 (75%), Positives = 118/140 (84%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+DNTQHIA L EPIDLCI L+IERNRGY+ SYPIDAVFM
Sbjct: 118 AQDIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGYN---------GSYPIDAVFM 168
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNG+E+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET
Sbjct: 169 PVRNANHSIHSYGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETL 228
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LE NQH+ TLP FH+RL
Sbjct: 229 HLEYNQHKGTLPPLTFHDRL 248
[70][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 213 bits (543), Expect = 4e-54
Identities = 102/140 (72%), Positives = 118/140 (84%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A++IILPP+V I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FM
Sbjct: 118 AQNIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 237
Query: 68 YLENNQHQVTLPFFPFHNRL 9
ENN+H+VTLP F H+ L
Sbjct: 238 NFENNEHKVTLPLFTCHDLL 257
[71][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 213 bits (542), Expect = 5e-54
Identities = 103/142 (72%), Positives = 119/142 (83%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP VEI+D TQ+IA LTEPIDLCIEL+I+R+RGY +K N +D SYPIDAVFM
Sbjct: 118 AQDIISPPYVEIVDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ TLP F +RL N
Sbjct: 238 NFEENKNKFTLPPLTFQDRLSN 259
[72][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 213 bits (542), Expect = 5e-54
Identities = 105/140 (75%), Positives = 120/140 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFM
Sbjct: 118 AKDIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE
Sbjct: 178 PVRNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENL 235
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+LE+ H ++L F ++++
Sbjct: 236 HLEDADHTISLSPFTVYDKV 255
[73][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 213 bits (541), Expect = 7e-54
Identities = 103/144 (71%), Positives = 120/144 (83%), Gaps = 2/144 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA LTEP+DLCIELKIER RGY + NN++D SYPIDAV M
Sbjct: 118 AQDIISPPSVEIVDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDI 237
Query: 68 --YLENNQHQVTLPFFPFHNRLVN 3
+E+N + ++PFF F + L N
Sbjct: 238 NRNMEDNLKRASVPFFAFDDGLDN 261
[74][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 212 bits (540), Expect = 9e-54
Identities = 103/139 (74%), Positives = 119/139 (85%), Gaps = 1/139 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA+LTEP+D CI L+IE NRGY +K NN + SYPIDAVFM
Sbjct: 118 AQDIISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNE QEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRNANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQ 237
Query: 68 YLENNQ-HQVTLPFFPFHN 15
L++NQ + VTLPFF FH+
Sbjct: 238 NLKDNQKNGVTLPFFTFHD 256
[75][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 212 bits (539), Expect = 1e-53
Identities = 102/142 (71%), Positives = 118/142 (83%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA LTEPIDLCI L+I R+RGY K + N ++ SYPIDAV M
Sbjct: 118 AQDIISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ TLP F F +RL N
Sbjct: 238 NFKENKNRFTLPIFTFQDRLTN 259
[76][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 211 bits (538), Expect = 2e-53
Identities = 103/135 (76%), Positives = 116/135 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP VEIIDNTQHIA+LTEPI+LCI L+IERNRGY +K + NF+D SYPIDAVFM
Sbjct: 118 AQDIISPPYVEIIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N NHSI+SYG GN+K EILFLEIWTNGSLTPKEALH+A+RNLI+LFIPFLH EEE
Sbjct: 178 PVRNVNHSIYSYGTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENL 237
Query: 68 YLENNQHQVTLPFFP 24
LE+NQH LPF P
Sbjct: 238 DLEDNQHM--LPFRP 250
[77][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 209 bits (533), Expect = 6e-53
Identities = 106/136 (77%), Positives = 116/136 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DIILPP VEI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFM
Sbjct: 118 AEDIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E
Sbjct: 178 PVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENL 235
Query: 68 YLENNQHQVTLPFFPF 21
LE+ H T+P PF
Sbjct: 236 PLEDADH--TIPLSPF 249
[78][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 209 bits (533), Expect = 6e-53
Identities = 103/144 (71%), Positives = 122/144 (84%), Gaps = 2/144 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPI--DAV 255
A+DII PP+V+++D TQHIA+LTEPIDLCI L+IER+RGY +K NN +D SYPI +AV
Sbjct: 118 AQDIISPPSVKMVDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAV 177
Query: 254 FMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+AS NLI+LFIPFLH EEE
Sbjct: 178 SMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEE 237
Query: 74 TFYLENNQHQVTLPFFPFHNRLVN 3
LE++ ++ TLPFF F ++L N
Sbjct: 238 DINLEDSLNRGTLPFFTFQDKLAN 261
[79][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 209 bits (533), Expect = 6e-53
Identities = 106/136 (77%), Positives = 116/136 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DIILPP VEI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFM
Sbjct: 118 AEDIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E
Sbjct: 178 PVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENL 235
Query: 68 YLENNQHQVTLPFFPF 21
LE+ H T+P PF
Sbjct: 236 PLEDADH--TIPLSPF 249
[80][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 209 bits (531), Expect = 1e-52
Identities = 102/140 (72%), Positives = 118/140 (84%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIATLTEPI+L I L+IE+NRGY +K N F+D SYPID VFM
Sbjct: 118 AQDIILPPYVEIVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE
Sbjct: 178 PVRNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENL 235
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LE+NQH + LP F F+++L
Sbjct: 236 NLEDNQHMIPLPPFTFYDKL 255
[81][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 208 bits (530), Expect = 1e-52
Identities = 105/140 (75%), Positives = 115/140 (82%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI DNTQHIA LTEPI CI L+IER+RGY +K + F+DRSYPIDAVFM
Sbjct: 103 AQDIILPPCVEIGDNTQHIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFM 162
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N NHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 163 PVRNVNHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENL 220
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LENNQ V+ F FH +L
Sbjct: 221 PLENNQDTVSFSPFSFHEKL 240
[82][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 207 bits (527), Expect = 3e-52
Identities = 104/136 (76%), Positives = 115/136 (84%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DIILPP VE++D+TQHIA L EPIDLCI LKIERNRGY LK NFED SYPIDAVFM
Sbjct: 118 AEDIILPPHVEVVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E
Sbjct: 178 PVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENL 235
Query: 68 YLENNQHQVTLPFFPF 21
+LE+ T+P PF
Sbjct: 236 HLEDADR--TIPLSPF 249
[83][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 206 bits (525), Expect = 5e-52
Identities = 102/140 (72%), Positives = 118/140 (84%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFM
Sbjct: 118 AQDIILPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE
Sbjct: 178 PVRNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENL 235
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LE+NQH V LP F F+++L
Sbjct: 236 NLEDNQHIVPLPPFTFYDKL 255
[84][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 206 bits (525), Expect = 5e-52
Identities = 102/140 (72%), Positives = 118/140 (84%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFM
Sbjct: 118 AQDIILPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE
Sbjct: 178 PVRNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENL 235
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LE+NQH V LP F F+++L
Sbjct: 236 SLEDNQHIVPLPPFTFYDKL 255
[85][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 204 bits (520), Expect = 2e-51
Identities = 97/142 (68%), Positives = 117/142 (82%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA LTEPI+LCIEL+I+R+RGY +K +N+ D SYPID V M
Sbjct: 118 AQDIISPPSVEIVDTTQHIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+L IPFLH EEE
Sbjct: 178 PVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDM 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ LP F F ++ N
Sbjct: 238 NFKENENRWNLPPFSFQDKFTN 259
[86][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 204 bits (520), Expect = 2e-51
Identities = 101/140 (72%), Positives = 117/140 (83%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFM
Sbjct: 118 AQDIILPPYVEILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSY NGN +EILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH +EE
Sbjct: 178 PVRNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENL 235
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LE NQH V LP F F+++L
Sbjct: 236 NLEGNQHMVPLPPFTFYDKL 255
[87][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 199 bits (505), Expect = 1e-49
Identities = 101/136 (74%), Positives = 113/136 (83%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DIILPP VEI+D+TQHIA LTEPI+ I LKIERN GY +K NFED SYPIDA+FM
Sbjct: 118 AEDIILPPHVEIVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSI+SY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE
Sbjct: 178 PVRNANHSINSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENL 235
Query: 68 YLENNQHQVTLPFFPF 21
+LE+ H T+P PF
Sbjct: 236 HLEDADH--TIPLSPF 249
[88][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 198 bits (504), Expect = 1e-49
Identities = 96/140 (68%), Positives = 116/140 (82%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+V+I+D TQHIA++TEPI+ CI L+IERNRGY + +N +D SYPIDAV M
Sbjct: 118 AQDIISPPSVKIVDTTQHIASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSM 175
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NAN+SI YGN NEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE
Sbjct: 176 PVRNANYSIQCYGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDL 235
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+L+++Q+ T PFFPFH L
Sbjct: 236 HLDDDQNIFTAPFFPFHEGL 255
[89][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 197 bits (502), Expect = 2e-49
Identities = 97/142 (68%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP+VEI+D TQHIA LTEPIDLCIEL+I+R+RGY + N +D SYPIDAV M
Sbjct: 118 AQDIISPPSVEIVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI+S GN NEK EILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 178 PVRNVNYSIYSCGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ TLP F RL N
Sbjct: 238 NFEENKNRFTLPLLTFQKRLTN 259
[90][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 197 bits (502), Expect = 2e-49
Identities = 95/142 (66%), Positives = 114/142 (80%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D +Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 123 AQDIILPPSVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSM 182
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 183 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 242
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 243 SFEENKNRFTPPLFTFQKRLTN 264
[91][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 197 bits (502), Expect = 2e-49
Identities = 95/142 (66%), Positives = 114/142 (80%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D +Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[92][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 197 bits (501), Expect = 3e-49
Identities = 95/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[93][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 196 bits (499), Expect = 5e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[94][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[95][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[96][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[97][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[98][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[99][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[100][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[101][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[102][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[103][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGA 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[104][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[105][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGA 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[106][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[107][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 196 bits (498), Expect = 7e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGA 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[108][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 196 bits (497), Expect = 9e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[109][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 196 bits (497), Expect = 9e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[110][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 196 bits (497), Expect = 9e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[111][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 196 bits (497), Expect = 9e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[112][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 196 bits (497), Expect = 9e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNLNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[113][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 196 bits (497), Expect = 9e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFKKRLTN 259
[114][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 196 bits (497), Expect = 9e-49
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFKKRLTN 259
[115][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 195 bits (496), Expect = 1e-48
Identities = 93/142 (65%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VE++D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEVVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 GFEENKNRFTPPLFTFQKRLTN 259
[116][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 195 bits (495), Expect = 2e-48
Identities = 96/140 (68%), Positives = 115/140 (82%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP V+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FM
Sbjct: 118 AQDIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE
Sbjct: 178 PVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENL 235
Query: 68 YLENNQHQVTLPFFPFHNRL 9
YL + +H + LP F+N++
Sbjct: 236 YLADAKHTIXLPPLIFYNKV 255
[117][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 195 bits (495), Expect = 2e-48
Identities = 96/140 (68%), Positives = 115/140 (82%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP V+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FM
Sbjct: 118 AQDIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE
Sbjct: 178 PVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENL 235
Query: 68 YLENNQHQVTLPFFPFHNRL 9
YL + +H + LP F+N++
Sbjct: 236 YLADAKHTIPLPPLIFYNKV 255
[118][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 195 bits (495), Expect = 2e-48
Identities = 96/140 (68%), Positives = 114/140 (81%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP V+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D YPIDA+FM
Sbjct: 118 AQDIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+A+R LI+ FIPF H+EEE
Sbjct: 178 PVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENL 235
Query: 68 YLENNQHQVTLPFFPFHNRL 9
YL + +H + L F+N++
Sbjct: 236 YLADAEHTIPLSSLIFYNKV 255
[119][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 194 bits (494), Expect = 2e-48
Identities = 95/133 (71%), Positives = 112/133 (84%), Gaps = 3/133 (2%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDA 258
A+DIILPP+V I+DNTQHI TLTEPID C+ L+IERNRGYS+K+ +N+ +DR YPIDA
Sbjct: 118 AQDIILPPSVAIVDNTQHIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDA 177
Query: 257 VFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
VFMPV+N NHSIH+Y NG+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EE
Sbjct: 178 VFMPVKNVNHSIHAYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEE 235
Query: 77 ETFYLENNQHQVT 39
E +LENNQ+Q T
Sbjct: 236 ENSHLENNQNQHT 248
[120][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 194 bits (494), Expect = 2e-48
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPPFTFQKRLTN 259
[121][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 194 bits (493), Expect = 3e-48
Identities = 94/142 (66%), Positives = 113/142 (79%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPPFTFKKRLTN 259
[122][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 194 bits (493), Expect = 3e-48
Identities = 93/142 (65%), Positives = 112/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VE +D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[123][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 194 bits (492), Expect = 3e-48
Identities = 93/142 (65%), Positives = 112/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D TQ IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFM
Sbjct: 118 AQDIILPPSVEIVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N++++T P F R N
Sbjct: 238 SFEENKNRLTPPLLTFQKRFTN 259
[124][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 194 bits (492), Expect = 3e-48
Identities = 93/142 (65%), Positives = 112/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA L EPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGA 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[125][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 194 bits (492), Expect = 3e-48
Identities = 93/142 (65%), Positives = 112/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDA M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[126][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 193 bits (491), Expect = 4e-48
Identities = 92/142 (64%), Positives = 112/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D TQ IA L EP+D CIEL+I+R+RGY ++ N +D SYPIDAVFM
Sbjct: 118 AQDIILPPSVEIVDTTQPIANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N++++T P F R N
Sbjct: 238 SFEENKNRLTPPLLTFQKRFTN 259
[127][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 192 bits (489), Expect = 8e-48
Identities = 93/142 (65%), Positives = 112/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNG EK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[128][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 192 bits (489), Expect = 8e-48
Identities = 94/142 (66%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F RL N
Sbjct: 238 SFEENKNRFTPPLLTFQKRLTN 259
[129][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 192 bits (487), Expect = 1e-47
Identities = 92/142 (64%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D TQ IA L EP+D CIEL+I+R+R Y ++ N +D SYPIDAVFM
Sbjct: 118 AQDIILPPSVEIVDTTQPIANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N++++T P F R N
Sbjct: 238 SFEENKNRLTPPLLTFQKRFTN 259
[130][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 191 bits (485), Expect = 2e-47
Identities = 92/142 (64%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPI V M
Sbjct: 118 AQDIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 238 SFEENKNRFTPPLFTFQKRLTN 259
[131][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 190 bits (483), Expect = 4e-47
Identities = 92/142 (64%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
V N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 XVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F RL N
Sbjct: 238 SFEENKNRFTPPLLTFQKRLTN 259
[132][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 190 bits (482), Expect = 5e-47
Identities = 94/136 (69%), Positives = 115/136 (84%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP VEI+D+TQHIA+LTEPI+LCI LKIERNRGY +K F++ +Y +DAVFM
Sbjct: 118 AQDIILPPHVEIVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N NHSI+SY GNEK+EILFLEIWTNGSLTPKEALH+A++NL++LFIPFL +EEE
Sbjct: 178 PVLNVNHSIYSY--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENL 235
Query: 68 YLENNQHQVTLPFFPF 21
LE+ +HQ+ PF PF
Sbjct: 236 NLEDAEHQI--PFSPF 249
[133][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 190 bits (482), Expect = 5e-47
Identities = 91/142 (64%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFM
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE
Sbjct: 178 PVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E +++++T P F R N
Sbjct: 238 SFEESKNRLTPPLLTFQKRFTN 259
[134][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 188 bits (478), Expect = 1e-46
Identities = 92/142 (64%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F +L N
Sbjct: 238 SFEENKNRFTPPLLTFQKKLTN 259
[135][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 188 bits (478), Expect = 1e-46
Identities = 91/131 (69%), Positives = 110/131 (83%), Gaps = 3/131 (2%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDA 258
A+DIILPP+V I+DNTQHI TLTEPI+ C+ L+IERNRGYSL++ +N+ ++R YPIDA
Sbjct: 118 AQDIILPPSVSIVDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDA 177
Query: 257 VFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
VFMPV+N NHSIHSY NG+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EE
Sbjct: 178 VFMPVKNVNHSIHSYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEE 235
Query: 77 ETFYLENNQHQ 45
E + ENNQ++
Sbjct: 236 EKPHFENNQNE 246
[136][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 188 bits (477), Expect = 2e-46
Identities = 95/133 (71%), Positives = 109/133 (81%), Gaps = 3/133 (2%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK--MSNNF-EDRSYPIDA 258
A+DIILP + I+DNTQHI TLTEPID CI L+I+RNRGYS K M NF +DR YPIDA
Sbjct: 118 AQDIILPNSAAIVDNTQHIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDA 177
Query: 257 VFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
VF+PV+N NHSIHSY NG+ E+LFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EE
Sbjct: 178 VFLPVKNVNHSIHSYENGSH--EMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEE 235
Query: 77 ETFYLENNQHQVT 39
E F+ ENNQ++ T
Sbjct: 236 ENFHFENNQNEHT 248
[137][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 184 bits (467), Expect = 3e-45
Identities = 91/142 (64%), Positives = 108/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 98 AQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 157
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 158 PVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 217
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ NQ++ T P F RL N
Sbjct: 218 RFQENQNRFTSPLLSFQKRLTN 239
[138][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 183 bits (465), Expect = 5e-45
Identities = 98/137 (71%), Positives = 110/137 (80%), Gaps = 7/137 (5%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFE-DRSYPI- 264
A+DIILPP+ I+DNTQHI TLTEPID C+ELKIER RGYS+K+ +N F D YPI
Sbjct: 118 AQDIILPPSTAIVDNTQHIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIP 177
Query: 263 -DAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
DAVFMPV N NHSI+SY G+ +EILFLEIWTNGSLTPKEAL +ASR LINLFIPFLH
Sbjct: 178 IDAVFMPVRNVNHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLH 235
Query: 86 VEEETFY-LENNQHQVT 39
EEE FY LENNQ+Q T
Sbjct: 236 AEEENFYLLENNQNQHT 252
[139][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 182 bits (463), Expect = 8e-45
Identities = 90/142 (63%), Positives = 108/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 98 AQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 157
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 158 PVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 217
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 218 RFQENKNRFTSPLLSFQKRLTN 239
[140][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 182 bits (463), Expect = 8e-45
Identities = 90/142 (63%), Positives = 109/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP+D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 98 AQDIILPPSVEIVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSM 157
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 158 PVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 217
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 218 RFQENKNRFTSPLLSFQKRLTN 239
[141][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 182 bits (461), Expect = 1e-44
Identities = 90/142 (63%), Positives = 108/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 98 AQDIILPPSVEIVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 157
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 158 PVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 217
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 218 RFQENKNRFTSPLLSFQKRLTN 239
[142][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 181 bits (460), Expect = 2e-44
Identities = 89/142 (62%), Positives = 108/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 206 AQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 265
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 266 PVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 325
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 326 RFQENKNRFTSPLLSFQKRLTN 347
[143][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 181 bits (460), Expect = 2e-44
Identities = 89/142 (62%), Positives = 108/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 238 RFQENKNRFTSPLLSFQKRLTN 259
[144][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 181 bits (460), Expect = 2e-44
Identities = 89/142 (62%), Positives = 108/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 227 AQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 286
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 287 PVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 346
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 347 RFQENKNRFTSPLLSFQKRLTN 368
[145][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 181 bits (460), Expect = 2e-44
Identities = 89/142 (62%), Positives = 108/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 98 AQDIILPPSVEIVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 157
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 158 PVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 217
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 218 RFQENKNRFTSPLLSFQKRLTN 239
[146][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 181 bits (460), Expect = 2e-44
Identities = 89/142 (62%), Positives = 108/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 118 AQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 238 RFQENKNRFTSPLLSFQKRLTN 259
[147][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 181 bits (459), Expect = 2e-44
Identities = 94/140 (67%), Positives = 110/140 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DII PP VEI+DNTQHIA+LTEPI+L I L+IE+NR LK N F+D SY I AV M
Sbjct: 118 AQDIISPPYVEIVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV + N+SIHS GNG KQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EE
Sbjct: 178 PVRHMNYSIHSSGNG--KQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEGN- 234
Query: 68 YLENNQHQVTLPFFPFHNRL 9
LENNQ ++ P F F+++L
Sbjct: 235 -LENNQDRIPFPSFTFYDKL 253
[148][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 181 bits (458), Expect = 3e-44
Identities = 93/135 (68%), Positives = 106/135 (78%), Gaps = 5/135 (3%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFE----DRSYPID 261
A+DIILPP+ I+DNTQHI TLTEPID C+ LKIER RGYS+K+ + D +YPID
Sbjct: 118 AQDIILPPSTAIVDNTQHIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPID 177
Query: 260 AVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
AVFMPV N NHSIHSY G+ E+LFLEIWTNGSLTPKEAL +ASR LINL +PFLH E
Sbjct: 178 AVFMPVRNVNHSIHSYERGSH--EMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAE 235
Query: 80 EETFYL-ENNQHQVT 39
EE FYL ENNQ+Q T
Sbjct: 236 EENFYLVENNQNQDT 250
[149][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 180 bits (457), Expect = 4e-44
Identities = 88/142 (61%), Positives = 108/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 227 AQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 286
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI + GNGN + EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 287 PVRNVNYSIFACGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGT 346
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 347 RFQENKNRFTSPLLSFQKRLTN 368
[150][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 179 bits (454), Expect = 9e-44
Identities = 88/142 (61%), Positives = 107/142 (75%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 98 AQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 157
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SI + GNGN K EILFLEIWTNGSLTP EAL++ASRNLI+LF+PFLH EEE
Sbjct: 158 PVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGT 217
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 218 RFQENKNRFTSPLLSFQKRLTN 239
[151][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 179 bits (453), Expect = 1e-43
Identities = 87/133 (65%), Positives = 106/133 (79%), Gaps = 3/133 (2%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDA 258
A+DIILP + I+DNTQHI T+TEPID C+ L+IERNRGY ++ ++N +DR YPID+
Sbjct: 118 AQDIILPTSATIVDNTQHIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDS 177
Query: 257 VFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
VFMPV+N NHSIHSY NG +LFLEIWTNGSLTPKEAL +ASR L NLFIPFLH EE
Sbjct: 178 VFMPVKNVNHSIHSYENGIHA--MLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEE 235
Query: 77 ETFYLENNQHQVT 39
+ F+ ENNQ++ T
Sbjct: 236 QNFHFENNQNEHT 248
[152][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 178 bits (452), Expect = 1e-43
Identities = 87/142 (61%), Positives = 112/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I+L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ +P FP + L +
Sbjct: 238 DGMNNRKGSNMPPFPLSHVLTD 259
[153][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 178 bits (451), Expect = 2e-43
Identities = 88/142 (61%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[154][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 177 bits (449), Expect = 3e-43
Identities = 88/142 (61%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[155][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 177 bits (449), Expect = 3e-43
Identities = 88/142 (61%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[156][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 177 bits (449), Expect = 3e-43
Identities = 88/142 (61%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[157][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 177 bits (449), Expect = 3e-43
Identities = 88/142 (61%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[158][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 177 bits (449), Expect = 3e-43
Identities = 89/133 (66%), Positives = 104/133 (78%), Gaps = 3/133 (2%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDA 258
++DIILP I+DNTQHI TLTEPID C+ L+IERNRGY ++ +SN +DR YPIDA
Sbjct: 118 SQDIILPTFATIVDNTQHIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDA 177
Query: 257 VFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
VFMPV+N NHSIHSY NG +LFLEIWTNGSLTPKEAL ASR LINLFIPFLH EE
Sbjct: 178 VFMPVKNVNHSIHSYENGIHA--MLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEE 235
Query: 77 ETFYLENNQHQVT 39
+ + ENNQ++ T
Sbjct: 236 QNCHFENNQNEHT 248
[159][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 177 bits (449), Expect = 3e-43
Identities = 88/142 (61%), Positives = 111/142 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[160][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 177 bits (448), Expect = 4e-43
Identities = 87/138 (63%), Positives = 108/138 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V IID TQHIA+LT+ I I L IE++RGY ++ N++D +PIDAVFM
Sbjct: 118 AQDIILPPSVRIIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NAN+SIHSYGNGN+ QEILFLEIWTNGSL P+EAL++ASRNLI+LFIPFL EE+
Sbjct: 178 PVRNANYSIHSYGNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHN 15
+NQ+ +P F F N
Sbjct: 238 DGMDNQNGSNMPSFSFSN 255
[161][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 176 bits (445), Expect = 1e-42
Identities = 86/142 (60%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ +P FP + L +
Sbjct: 238 DGMNNRKGSNMPPFPLSHVLTD 259
[162][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 176 bits (445), Expect = 1e-42
Identities = 87/142 (61%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV + N+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDVNYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[163][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 175 bits (443), Expect = 2e-42
Identities = 87/142 (61%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
N + + FP + L +
Sbjct: 238 DGMNKKKGSNMLPFPLSHVLTD 259
[164][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 175 bits (443), Expect = 2e-42
Identities = 87/142 (61%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
N + + FP + L +
Sbjct: 238 DGMNKKKGSNMLPFPLSHVLTD 259
[165][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 175 bits (443), Expect = 2e-42
Identities = 87/142 (61%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
N + + FP + L +
Sbjct: 238 DGMNKKKGSNMLPFPLSHVLTD 259
[166][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 174 bits (441), Expect = 3e-42
Identities = 86/142 (60%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHLLTD 259
[167][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 174 bits (441), Expect = 3e-42
Identities = 86/142 (60%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHLLTD 259
[168][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 174 bits (441), Expect = 3e-42
Identities = 86/142 (60%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHLLTD 259
[169][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 174 bits (441), Expect = 3e-42
Identities = 86/142 (60%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHLLTD 259
[170][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 174 bits (441), Expect = 3e-42
Identities = 86/142 (60%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHLLTD 259
[171][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 174 bits (441), Expect = 3e-42
Identities = 86/142 (60%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHLLTD 259
[172][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 174 bits (440), Expect = 4e-42
Identities = 86/142 (60%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[173][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 174 bits (440), Expect = 4e-42
Identities = 86/142 (60%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[174][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 174 bits (440), Expect = 4e-42
Identities = 86/142 (60%), Positives = 110/142 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[175][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 173 bits (438), Expect = 6e-42
Identities = 84/136 (61%), Positives = 107/136 (78%), Gaps = 1/136 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+ FIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNI 237
Query: 68 -YLENNQHQVTLPFFP 24
+ N + +P FP
Sbjct: 238 DGINNRKGSSNMPPFP 253
[176][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 172 bits (437), Expect = 8e-42
Identities = 86/142 (60%), Positives = 108/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL +ASR LI LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ +P FP + L +
Sbjct: 238 DGMNNRKGSNMPPFPLSHVLTD 259
[177][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 172 bits (436), Expect = 1e-41
Identities = 85/142 (59%), Positives = 109/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV + N+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDVNYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[178][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 172 bits (436), Expect = 1e-41
Identities = 84/136 (61%), Positives = 107/136 (78%), Gaps = 1/136 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNI 237
Query: 68 -YLENNQHQVTLPFFP 24
+ N + +P FP
Sbjct: 238 DGMNNRKGSSNMPPFP 253
[179][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 172 bits (435), Expect = 1e-41
Identities = 85/142 (59%), Positives = 109/142 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+ ID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFM
Sbjct: 118 AQDIILPPSVKTIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 178 PVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNI 237
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 238 DGMNNKKGSNMLPFPLSHVLTD 259
[180][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 168 bits (426), Expect = 2e-40
Identities = 82/118 (69%), Positives = 97/118 (82%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV M
Sbjct: 227 AQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSM 286
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
PV N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 287 PVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEE 344
[181][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 166 bits (421), Expect = 6e-40
Identities = 81/135 (60%), Positives = 108/135 (80%), Gaps = 1/135 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQ+IAT+T+ I L IELKIE++ GY ++ D ++P+DAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQYIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
P+ N N+S+HS+ NGNE QEILFLEIWTNGS+TPKEAL++ASR+LINLFIPFLH E++ F
Sbjct: 178 PIRNVNYSVHSFENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKEF 237
Query: 68 -YLENNQHQVTLPFF 27
Y N ++ + +F
Sbjct: 238 IYGLKNTYESNMSYF 252
[182][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 159 bits (401), Expect = 1e-37
Identities = 80/141 (56%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDII PP+VE+ID TQ+IATLT+ I L IELKIE++ GY + S D + +DAVF
Sbjct: 121 ARDIIFPPSVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFT 180
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EET 72
P+ NAN+S+HS+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E EE
Sbjct: 181 PIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
Query: 71 FYLENNQHQVTLPFFPFHNRL 9
+ +N + + P N++
Sbjct: 241 MHDKNESNTLHFSSSPSENKM 261
[183][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 158 bits (400), Expect = 2e-37
Identities = 78/136 (57%), Positives = 106/136 (77%), Gaps = 2/136 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQ+IATLT+ I L IEL+IE++ GY ++ S D +PIDA+FM
Sbjct: 118 AQDIILPPSVKIIDTTQYIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
P+ NAN+S+HS+ + N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 178 PIRNANYSVHSFEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEI 237
Query: 68 Y--LENNQHQVTLPFF 27
LEN + +F
Sbjct: 238 INGLENKYESNNMSYF 253
[184][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 158 bits (400), Expect = 2e-37
Identities = 75/118 (63%), Positives = 101/118 (85%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQ+IAT+T+PI L IEL+IE++ GY ++ S D +PIDA+FM
Sbjct: 118 AQDIILPPSVKIIDTTQYIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
P+ NAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 178 PIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKK 235
[185][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 158 bits (399), Expect = 2e-37
Identities = 80/136 (58%), Positives = 98/136 (72%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V IID TQHIA+L E I I +I ++RGY ++ NN D + DAV M
Sbjct: 118 AQDIILPPSVRIIDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NAN+SIHSYGNGNE QEILF EIWTNGSL P EAL++ASRNLI+LFIPF+ EE+
Sbjct: 178 PVRNANYSIHSYGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNI 237
Query: 68 YLENNQHQVTLPFFPF 21
+N + + FPF
Sbjct: 238 DGIDNWNGYNMSLFPF 253
[186][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 157 bits (396), Expect = 5e-37
Identities = 80/135 (59%), Positives = 101/135 (74%), Gaps = 2/135 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDI+ PP+VE+ID TQ+IATLT+ I L IELKIE++ GY + S D + +DAVF
Sbjct: 121 ARDIVFPPSVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFT 180
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
P+ NAN+S+HS+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E+E
Sbjct: 181 PIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
Query: 68 Y--LENNQHQVTLPF 30
L N TL F
Sbjct: 241 MHGLGNKNESNTLHF 255
[187][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 154 bits (390), Expect = 2e-36
Identities = 71/126 (56%), Positives = 101/126 (80%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DI+LPP+V+ ID++QHIAT+T+ I L IE++I+++RGY ++ S + + IDAVFM
Sbjct: 118 AEDILLPPSVQAIDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
P+ AN+S+HS+GN + QEILF+EIWT+GSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 178 PIRKANYSVHSFGNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEI 237
Query: 68 YLENNQ 51
+ ++
Sbjct: 238 ISDRDE 243
[188][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 154 bits (389), Expect = 3e-36
Identities = 73/118 (61%), Positives = 99/118 (83%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQ+IAT+T+PI L IEL+I+++ GY + S D + IDA+FM
Sbjct: 118 AQDIILPPSVKIIDTTQYIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
P+ NAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 178 PIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKK 235
[189][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 153 bits (386), Expect = 7e-36
Identities = 75/136 (55%), Positives = 103/136 (75%), Gaps = 2/136 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID Q+IATLT+ I L IEL+IE++ GY ++ SN + + IDA+FM
Sbjct: 118 AQDIILPPSVKIIDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
P+ NAN+S+HS+ N N+ QE+LF+EIWTNGS+TPK+AL++ASR+LI+LFIPFLH E
Sbjct: 178 PIRNANYSVHSFENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREI 237
Query: 68 Y--LENNQHQVTLPFF 27
LEN + +F
Sbjct: 238 INELENEYKLSNISYF 253
[190][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 147 bits (370), Expect = 5e-34
Identities = 75/145 (51%), Positives = 97/145 (66%), Gaps = 10/145 (6%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS-------- 273
A+DI+LPP+V IID TQHIA + + I L I L+IE+ RGY ++ NN+ +
Sbjct: 118 AQDIMLPPSVRIIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAA 177
Query: 272 --YPIDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFI 99
+PIDA F PV+N N+SIHSY + NE QEILFLEIWTNG L PKEAL++ASRNLI+ F+
Sbjct: 178 FVFPIDAAFAPVQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFL 237
Query: 98 PFLHVEEETFYLENNQHQVTLPFFP 24
PFL+ +EE N+ P P
Sbjct: 238 PFLNAKEENSDGTNSLSDDITPSLP 262
[191][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 145 bits (365), Expect = 2e-33
Identities = 66/118 (55%), Positives = 93/118 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DI+LP +VE+ID TQHIAT+T+ + I+L I ++RGY ++ +ED ++ ++A F
Sbjct: 118 AEDIVLPSSVEVIDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFT 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
P+ NAN+S+HS+ N EKQEILF+E+WTNGSLTPKEAL +AS++LINLFIP LH ++E
Sbjct: 178 PIRNANYSVHSFENEKEKQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKE 235
[192][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 142 bits (357), Expect = 2e-32
Identities = 63/118 (53%), Positives = 91/118 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DI LPP+V++ID++Q+I T+T+PI + IEL IE + GY ++ N + D +P+DAVFM
Sbjct: 118 AGDISLPPSVKVIDDSQYIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
PV N N+S+H +G+G E +EILF+E+WTNGSLTP EA+ +AS++ I+L PFLH + E
Sbjct: 178 PVRNVNYSVHPFGSGKEMREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHE 235
[193][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 139 bits (351), Expect = 8e-32
Identities = 64/118 (54%), Positives = 91/118 (77%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A D LPP+V+IID++Q+I T+T+PI + IE +IE++ GY ++ N + D +P+DAV M
Sbjct: 118 AGDTSLPPSVKIIDDSQYIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
PV N N+S+H +G+G E +EI F+EIWTNGS TP EAL +AS+NLI+L IPFLH++ E
Sbjct: 178 PVRNVNYSVHPFGSGREMREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHE 235
[194][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 137 bits (344), Expect = 5e-31
Identities = 64/114 (56%), Positives = 90/114 (78%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDI + +IDNTQ++AT+T I L IEL IE++RGY ++ S + + +PIDAVFM
Sbjct: 119 ARDIQGSSLIHVIDNTQYVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFM 178
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
P+ NAN+S+HS+G+ + +EIL LEIWTNGSLTP++AL++ASRNLI+LFIP ++
Sbjct: 179 PIRNANYSVHSFGSREKTKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMN 232
[195][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 135 bits (341), Expect = 1e-30
Identities = 70/136 (51%), Positives = 92/136 (67%), Gaps = 1/136 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A D+ LPP VE IDN+Q+IAT+T+PI L IEL+IE++ GY ++ +PIDAVFM
Sbjct: 119 AGDLSLPPGVEAIDNSQYIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFM 178
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EET 72
PV N N+SIH +G+G QEILF+EIWTNGSLTP EAL +AS L++L FL+V +
Sbjct: 179 PVRNVNYSIHLFGSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDV 238
Query: 71 FYLENNQHQVTLPFFP 24
EN + + L P
Sbjct: 239 SLFENGEDSLDLTKSP 254
[196][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 134 bits (337), Expect = 3e-30
Identities = 68/140 (48%), Positives = 103/140 (73%), Gaps = 2/140 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DI P ++I+ Q+IATL + I L IEL IE++RGY ++ +++ +P+DAVFM
Sbjct: 118 AQDIKGPSCIKIMIIAQYIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFM 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EE 75
P+ NAN+S+HS+ + + +EILFLEIWT+GSLTPKEAL++ASRNLI+LFIP ++ E E+
Sbjct: 178 PIRNANYSVHSFESEKKIKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEK 237
Query: 74 TFYLENNQHQVTLPFFPFHN 15
F +E ++ + +FPF +
Sbjct: 238 NFGIEKT-NESNMSYFPFQS 256
[197][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 133 bits (335), Expect = 5e-30
Identities = 68/135 (50%), Positives = 96/135 (71%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DI+LP +V+IID +QHIAT+T I L +EL+IER+ GY + + IDA+F
Sbjct: 118 AGDILLPTSVKIIDASQHIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFT 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
P+ NAN+SIHS+ + N+ +EILFLE+WTNGSLTP AL +ASR+LI+LFI FL++E+E
Sbjct: 178 PIRNANYSIHSFESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEES 237
Query: 68 YLENNQHQVTLPFFP 24
E +++ + FP
Sbjct: 238 IKEIENNELNIKNFP 252
[198][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 133 bits (335), Expect = 5e-30
Identities = 66/119 (55%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DI+LPP++E+ D TQHIA LT+ + L IEL +E+ GY + D + ID+VFM
Sbjct: 230 AGDIVLPPSLEVTDPTQHIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFM 289
Query: 248 PVENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
PV NAN+S+HSY + QEILFLEIWTNGS+TP+EALH+A+R LI+LF+PFLH +++
Sbjct: 290 PVRNANYSVHSYESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKK 348
[199][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 125 bits (315), Expect = 1e-27
Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAV 255
A+DIILP +++IID TQHIA+LT+ + + L IERN+GY++ + S ++ +PIDA
Sbjct: 119 AQDIILPSSIKIIDGTQHIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAP 178
Query: 254 FMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N N SIHSY + N+ +E+L EIWTNG LTP+EA ++A LI+L +P LH+EE+
Sbjct: 179 CMPVRNVNFSIHSYKSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED 238
[200][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 125 bits (313), Expect = 2e-27
Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 4/97 (4%)
Frame = -2
Query: 401 VEIIDNTQH----IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENA 234
+++I N + IA L +PIDLCI L+I+RN YS+K NNF+D SYPID VFM V+NA
Sbjct: 52 LDLISNNNYSTILIARLKKPIDLCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNA 111
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQAS 123
NH+IH YGN NE+QEILFL++WTN +LTPKEA H+AS
Sbjct: 112 NHNIHFYGNVNERQEILFLKLWTNKNLTPKEAFHEAS 148
[201][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 122 bits (306), Expect = 1e-26
Identities = 58/120 (48%), Positives = 90/120 (75%), Gaps = 2/120 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DI LP +VE+ID QHIAT+T+ + L IELKIE++ GY + ++D ++ +DAVF
Sbjct: 121 AQDIELPTSVEVIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFT 180
Query: 248 PVENANHSIHSYGNGNEK--QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
P+ + N+SIH + + ++ +E+L EIW+NGS+TP+EA+++ASR+ INLF+PFL E+E
Sbjct: 181 PIRSVNYSIHCFESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKE 240
[202][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 120 bits (302), Expect = 4e-26
Identities = 59/126 (46%), Positives = 90/126 (71%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILP +++IID+TQHIA+LT+ I + LKIE+ + Y+++ +D +PID V +
Sbjct: 119 AQDIILPSSIQIIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSL 178
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV+N N SIHSY + + QE+L EIWTNG LTP+E +++A +L++L IP L VE+
Sbjct: 179 PVQNVNFSIHSYKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQN-- 236
Query: 68 YLENNQ 51
++N+Q
Sbjct: 237 -IKNSQ 241
[203][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 119 bits (297), Expect = 1e-25
Identities = 57/111 (51%), Positives = 78/111 (70%), Gaps = 1/111 (0%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DI + P +EI+D+ Q IA LTEPID +EL IE++ G+ L+ + S+ IDA+FM
Sbjct: 115 ASDIQIEPCIEILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFM 174
Query: 248 PVENANHSIHSYGN-GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFI 99
P+ N N+SIH G+ K E+L LEIWTNGS+TPKEA HQAS ++N+F+
Sbjct: 175 PIRNVNYSIHPVEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFL 225
[204][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 112 bits (279), Expect = 2e-23
Identities = 58/116 (50%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DI+LPP+V +D TQHIAT+T I I L++ER G+ + ++ S P DAVFM
Sbjct: 119 AQDIVLPPSVGTMDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFM 178
Query: 248 PVENANHSIHSYGN--GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
P+ +AN+SIH G+ G +E+L LE T+GS TP+EA+++ASRNL NLF PF H
Sbjct: 179 PIRHANYSIHRLGSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[205][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 111 bits (277), Expect = 3e-23
Identities = 57/120 (47%), Positives = 80/120 (66%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DI L + I + HIAT+T+PI +EL I + RGY ++ N+ +D +P+DA+F
Sbjct: 120 AADIELSQNITISNPYHHIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFN 179
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N SIH N E+QE L LEIWTNG++TP +AL Q S NLI+LF+P +E++T+
Sbjct: 180 PVRNVNFSIH---NLAEQQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDDTY 236
[206][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 106 bits (264), Expect = 9e-22
Identities = 47/116 (40%), Positives = 80/116 (68%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A D+ LP ++I++ Q+IAT+ +PI+ +++ I++ +GYSLK + + + +D VF+
Sbjct: 118 ASDLNLPSFIKIVNPDQYIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFI 177
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
P+ + N+SIHS+ + +E L +E+WTNGS+ PKEA+ +AS NL+NLF P + E
Sbjct: 178 PIRSVNYSIHSFEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQE 233
[207][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 104 bits (260), Expect = 3e-21
Identities = 58/142 (40%), Positives = 85/142 (59%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+ I LPP V+++DNTQ+IA L P + I + +E + + + + +DA
Sbjct: 115 AQHIKLPPVVQVVDNTQYIARLEMPTSIEIHITLENTKTCTSLNTMPTTKGRFILDAALK 174
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV N N+SIHS G G+ +QE+L LE+WTNGSLTP+E + QAS+NL +L P L V E F
Sbjct: 175 PVRNMNYSIHSLGEGDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKV-ERYF 233
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+ N H+ + F P + +N
Sbjct: 234 QAKQNIHKKRM-FTPTQSENLN 254
[208][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 100 bits (250), Expect = 4e-20
Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 5/120 (4%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRG---YSLKMSNNFEDRSYPIDA 258
A+DIILPP ++I+D TQHIA++T+PI L + LKIE+N G S+ + R P +
Sbjct: 122 AQDIILPPFIQIVDGTQHIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPTEI 181
Query: 257 VFMPVENANHSIHSYGNGNEKQ--EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
+MPV + ++++ Y + + +IL E+WTNG LTPKEAL++A LI+L IP L V
Sbjct: 182 FYMPVRSVTYNVYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLLDV 241
[209][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 100 bits (250), Expect = 4e-20
Identities = 50/116 (43%), Positives = 81/116 (69%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DI+ PP++ + D +Q+IA +T I +E+++E++ GY + + + ID+VFM
Sbjct: 219 AGDILCPPSLVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFM 278
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
PV AN+S+HS+ + +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 279 PVVQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334
[210][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 100 bits (250), Expect = 4e-20
Identities = 50/116 (43%), Positives = 81/116 (69%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A DI+ PP++ + D +Q+IA +T I +E+++E++ GY + + + ID+VFM
Sbjct: 306 AGDILCPPSLVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFM 365
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
PV AN+S+HS+ + +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 366 PVVQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421
[211][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 95.5 bits (236), Expect = 2e-18
Identities = 41/60 (68%), Positives = 54/60 (90%)
Frame = -2
Query: 254 FMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
FMP+ NAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+L +LFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
[212][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 91.7 bits (226), Expect = 2e-17
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 4/117 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPV 243
LP VEII TQ++AT+ E L +E KIE+ RGY + K + N D PIDA+FMPV
Sbjct: 114 LPSEVEIIHGTQYVATVAENAILEMEFKIEKGRGYKIIDKKQTENSID-FLPIDAIFMPV 172
Query: 242 ENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+ + + +E +E L LEIW NGS+TP++++ QA+ L+NLF PF + E
Sbjct: 173 RKVNYMVEEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPFKKINFE 229
[213][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 91.7 bits (226), Expect = 2e-17
Identities = 44/118 (37%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDA 258
ARD+ LP ++E++D Q+IAT++ + L +E +E +GY L + F+ PIDA
Sbjct: 114 ARDLQLPSSIELVDPDQYIATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDA 173
Query: 257 VFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
VFMPV N+++ G+ QE + +E+WTNGS+ ++A+ + +INLF P +V
Sbjct: 174 VFMPVTKVNYTVEENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSPLQNV 231
[214][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 87.8 bits (216), Expect = 3e-16
Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A I P ++ +D Q IATL LCIEL I + L + + + IDA F
Sbjct: 126 AEHIKFPSSILAVDPDQSIATLLNETQLCIELFIRQGIAKQLTRTKK-NHQGFFIDANFT 184
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF----IPFLHVE 81
PV+ AN SIHS G+ Q++L LEIWTN +LTP EAL+QA +L+NLF P LH E
Sbjct: 185 PVQKANFSIHSVGDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[215][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 87.4 bits (215), Expect = 4e-16
Identities = 54/134 (40%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS--YPIDAV 255
AR LPP +++ID Q+IAT+ L +E KIE GY + +N + +D+V
Sbjct: 109 ARSFELPPEIKLIDPEQYIATICGNNTLEMEFKIEVGSGYKIVEKDNSTEHFEFLQVDSV 168
Query: 254 FMPVENANHSIH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV-- 84
FMPV+ N I + G N E L L+IWTNGS++ KEA+ A+ NLINLF P +
Sbjct: 169 FMPVKKVNFRIEETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDG 228
Query: 83 EEETFYLENNQHQV 42
E ET Y N +
Sbjct: 229 ESETDYETNETSHI 242
[216][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 87.0 bits (214), Expect = 6e-16
Identities = 43/77 (55%), Positives = 59/77 (76%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DIILPP+V+IID TQ+IATLT+ I L IE +IE++ GY ++ S D + +DAVFM
Sbjct: 118 AQDIILPPSVKIIDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSKKSTDGLFFVDAVFM 177
Query: 248 PVENANHSIHSYGNGNE 198
P+ NAN+SIHS+ N N+
Sbjct: 178 PIRNANYSIHSFENKNK 194
[217][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 86.7 bits (213), Expect = 8e-16
Identities = 56/134 (41%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE+I+ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV
Sbjct: 114 LPSEVEVINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPV 173
Query: 242 ENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
N+S+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P +
Sbjct: 174 TKVNYSVESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL------ 227
Query: 65 LENNQHQVTLPFFP 24
NQ + +P +P
Sbjct: 228 ---NQLETAVPEYP 238
[218][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 86.7 bits (213), Expect = 8e-16
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VEI+D Q++ATL E L +E ++E+ +GY + E S ID++FMPV
Sbjct: 114 LPSEVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPV 173
Query: 242 ENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
N+S+ + ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 174 TKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[219][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 86.7 bits (213), Expect = 8e-16
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VEI+D Q++ATL E L +E ++E+ +GY + E S ID++FMPV
Sbjct: 114 LPSEVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPV 173
Query: 242 ENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
N+S+ + ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 174 TKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[220][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 86.7 bits (213), Expect = 8e-16
Identities = 56/134 (41%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE+I+ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV
Sbjct: 114 LPSEVEVINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPV 173
Query: 242 ENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
N+S+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P +
Sbjct: 174 TKVNYSVESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL------ 227
Query: 65 LENNQHQVTLPFFP 24
NQ + +P +P
Sbjct: 228 ---NQLETAVPEYP 238
[221][TOP]
>UniRef100_B9IJB3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IJB3_POPTR
Length = 73
Score = 86.3 bits (212), Expect = 1e-15
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = -2
Query: 365 LTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEKQEI 186
L EPIDL I L+IERN GY +K NF+D SY IDA+FM V NANH++HSYGNGNEK ++
Sbjct: 9 LKEPIDLHIGLEIERNHGYCMKPPKNFQDGSYSIDAIFMHVRNANHNVHSYGNGNEKSQL 68
[222][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 86.3 bits (212), Expect = 1e-15
Identities = 55/127 (43%), Positives = 73/127 (57%), Gaps = 8/127 (6%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSY 270
A + LP VE+I+ HIATL E L +E I R RGY S M+ +F
Sbjct: 127 AEKLQLPSEVEVINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDF----L 182
Query: 269 PIDAVFMPVENANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPF 93
ID+VFMPV N+++ + G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P
Sbjct: 183 QIDSVFMPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSPL 242
Query: 92 LHVEEET 72
V +T
Sbjct: 243 QEVSFDT 249
[223][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 85.9 bits (211), Expect = 1e-15
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 4/118 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE++D Q+IATL+ L +E ++E+ GY N E + IDAVFMPV
Sbjct: 114 LPSEVEVVDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPV 173
Query: 242 ENANHSIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
N+++ G+ +++ L L+IWTNGSLTP+EAL QA+ L++LF+P + E+
Sbjct: 174 RKVNYTVEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLKDITLES 231
[224][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 85.5 bits (210), Expect = 2e-15
Identities = 50/115 (43%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDA 258
A + LP VE++D TQ++ATLTE L +E +IE GY + S IDA
Sbjct: 111 AANFELPSEVEVVDPTQYVATLTEGSKLEMEFRIETGTGYKGVERGKDDGTSLDFLEIDA 170
Query: 257 VFMPVENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
VFMPV N+ + G E Q+ L LEIWTNGS PKEAL +A+ +++LF P
Sbjct: 171 VFMPVTKVNYIVEDIRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[225][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 85.1 bits (209), Expect = 2e-15
Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 4/110 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE++D TQ+IATL + L +E +IE+ + Y N E + IDAVFMPV
Sbjct: 114 LPSEVEVVDPTQYIATLADGAKLEMEFRIEKGKSYRAVQRNRDEATALDFLQIDAVFMPV 173
Query: 242 ENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
N+S+ S + G+ ++ L LEIWTNGS+ P+EAL QA+ + LF P
Sbjct: 174 TKVNYSVDSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNP 223
[226][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 85.1 bits (209), Expect = 2e-15
Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE+++ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV
Sbjct: 114 LPSEVEVVNPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSEEPAALDFLQIDAVFMPV 173
Query: 242 ENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
N+S+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P
Sbjct: 174 TKVNYSVESIRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[227][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 85.1 bits (209), Expect = 2e-15
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
+P VE+ID Q+IATL E L +E ++ER GY + E+ S ID+VFMPV
Sbjct: 114 VPSEVEVIDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPV 173
Query: 242 ENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
N+++ +G ++ L L+IWTNGS+ P+EAL +AS + NLFIP + E
Sbjct: 174 TKVNYTVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229
[228][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 84.7 bits (208), Expect = 3e-15
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE+ID TQ++AT+ E L +E +IE+ +GY E S ID++FMPV
Sbjct: 114 LPSEVEVIDPTQYVATIAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSIFMPV 173
Query: 242 ENANHSIH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+ S G G ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 174 RKVNYSVEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[229][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 84.7 bits (208), Expect = 3e-15
Identities = 56/130 (43%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDA 258
A I LP VEI++ +IAT+T L IE KIE GY L F +S IDA
Sbjct: 109 ANCIQLPSEVEIVNPNHYIATITTSNVLEIEFKIESGTGYKLA-GQTFCKKSQDYLQIDA 167
Query: 257 VFMPVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH-- 87
+FMPV+ + I + Y N N+ E LFL+IWTNGS++P+EA+ ASR +I+ F L
Sbjct: 168 IFMPVQKVDFKIENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLLENK 227
Query: 86 VEEETFYLEN 57
+ +ET EN
Sbjct: 228 LPQETKESEN 237
[230][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 84.3 bits (207), Expect = 4e-15
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE+ID TQ++AT+ + L +E +IER +GY E S ID+VFMPV
Sbjct: 114 LPSEVEVIDPTQYVATIADGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSVFMPV 173
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 174 RKVNYSVEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 229
[231][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 84.3 bits (207), Expect = 4e-15
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE+ID TQ++ATL E L +E +IE+ +GY E S ID+VFMPV
Sbjct: 114 LPSEVEVIDQTQYVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSVFMPV 173
Query: 242 ENANHSIH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+ + G + ++ L LE+WTNGS++P+EAL A+ L+ LF P + E
Sbjct: 174 RKVNYSVEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNPLKDISLE 230
[232][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 84.3 bits (207), Expect = 4e-15
Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE+ID TQ++AT+ E L +E +IER +GY E S ID++FMPV
Sbjct: 114 LPSEVEVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPV 173
Query: 242 ENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 174 RKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[233][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 84.3 bits (207), Expect = 4e-15
Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE+ID TQ++AT+ E L +E +IER +GY E S ID++FMPV
Sbjct: 114 LPSEVEVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPV 173
Query: 242 ENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 174 RKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[234][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 83.6 bits (205), Expect = 6e-15
Identities = 46/116 (39%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VEI+D +Q++ATL E L +E +IE+ +GY + S ID+VFMPV
Sbjct: 114 LPSEVEIVDPSQYVATLAEGSKLEMEFRIEKGKGYRAIERGKDDSTSLDFLQIDSVFMPV 173
Query: 242 ENANHSIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
N+S+ +G ++ L +EIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 174 TKVNYSVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[235][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 83.2 bits (204), Expect = 8e-15
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
LP VE +D Q+IATL + L +E +IER +GY E S +DAVFMPV
Sbjct: 114 LPSDVEFVDPGQYIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVFMPV 173
Query: 242 ENANHSIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
N+S+ +G+ +++ L L++WTNGS++P+EAL QA+ L++LF P +E
Sbjct: 174 TKVNYSVEDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[236][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 83.2 bits (204), Expect = 8e-15
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDA 258
A I LPP +EII+ +IAT++ L IE K ER GY L F D+S IDA
Sbjct: 111 ADSIQLPPNIEIINPNHYIATISTSNVLEIEFKFERGTGYKLA-GQTFCDKSEDFLQIDA 169
Query: 257 VFMPVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
+FMP++ + I + Y N N E LFL+IWTNGS++P +A+ AS+ +I F
Sbjct: 170 IFMPIQKVDFKIENVYDNSNSITERLFLDIWTNGSISPDDAISYASKFIIEFF 222
[237][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 83.2 bits (204), Expect = 8e-15
Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAV 255
A I LP ++I++ +IAT++ I+L +E KIE GY L ++ N+ ID++
Sbjct: 109 ADSIDLPSGIKIVNPNHYIATISTSINLELEFKIEHGIGYKLASQLFNDENKNFLQIDSI 168
Query: 254 FMPVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE- 81
FMPV+ N I + Y N E L LEIWTNGS+ P EAL +A + +IN F L +
Sbjct: 169 FMPVQKVNFKIENLYDADNSISERLILEIWTNGSIEPIEALKKACKIIINCFNSLLKTQN 228
Query: 80 -EETFYLENNQHQVTL 36
+ET +N ++T+
Sbjct: 229 TKETTKKTSNNRKLTI 244
[238][TOP]
>UniRef100_C5Z5P0 Putative uncharacterized protein Sb10g023655 (Fragment) n=1
Tax=Sorghum bicolor RepID=C5Z5P0_SORBI
Length = 66
Score = 82.8 bits (203), Expect = 1e-14
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = -2
Query: 182 FLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHNRLVN 3
FLEIWTNGSLTPKEAL++ SRNLI+LF+PF+H EEE E N++++T PF F R N
Sbjct: 7 FLEIWTNGSLTPKEALYETSRNLIDLFLPFIHTEEEGTNFEENKNRLTPPFLTFQKRFTN 66
[239][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 82.8 bits (203), Expect = 1e-14
Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDA 258
A ++ LP ++E++D Q+IATL+ +L +E I +GY + + N S P+DA
Sbjct: 114 AANLQLPTSIEVVDGGQYIATLSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDA 173
Query: 257 VFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
+FMP+ N+ + E + LEIWTNGS++P++AL + +I+LF P H
Sbjct: 174 IFMPIHKVNYMVEQDHTSKFLTERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSS 233
Query: 77 E 75
E
Sbjct: 234 E 234
[240][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 82.0 bits (201), Expect = 2e-14
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 9/138 (6%)
Frame = -2
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVF 252
D LP VEI++ TQ++ATL+ L +E +IE+ +GY N E + IDA++
Sbjct: 111 DFELPTEVEIVNPTQYVATLSSDATLEMEFRIEQGKGYHAVGKNRDEAAALDFLEIDAIY 170
Query: 251 MPVENANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIP-----FL 90
MPV N+ + G +++ L L+IWTNG+LTP+E+L QA+ L++LF P F
Sbjct: 171 MPVRRVNYEVEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDATFN 230
Query: 89 HVEEETFYLENNQHQVTL 36
VE+ E+ +Q+ +
Sbjct: 231 VVEDIELEEEDETNQIPI 248
[241][TOP]
>UniRef100_A0T0K0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaeodactylum
tricornutum RepID=RPOA_PHATR
Length = 311
Score = 81.6 bits (200), Expect = 2e-14
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
Frame = -2
Query: 419 IILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSY-PIDAVFM 249
I LPP VEII+ +IAT++ L IE K E GY L S NF ED +Y +D +FM
Sbjct: 112 IQLPPGVEIINPNHYIATISTSNILEIEFKFEYGSGYHLA-SQNFVEEDENYLQLDTIFM 170
Query: 248 PVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
PV+ + I + Y N E LFL+IWTNGS++P +AL A++ +I+LF
Sbjct: 171 PVQKVDFKIENIYDATNNISERLFLDIWTNGSISPNDALESAAQVIIDLF 220
[242][TOP]
>UniRef100_B5YDX0 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Dictyoglomus
thermophilum H-6-12 RepID=B5YDX0_DICT6
Length = 324
Score = 81.3 bits (199), Expect = 3e-14
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 15/157 (9%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPI----- 264
A D I+P V+I++ IATL E + +E+++++ +GY N +D++YPI
Sbjct: 106 AADFIVPSNVKIVNPDLVIATLVEDMPFHMEVEVKKGKGYVSAEEN--KDQNYPIGVLVL 163
Query: 263 DAVFMPVENANHSIHSYGNGNEKQ-EILFLEIWTNGSLTPKEALHQASRNLINLF----- 102
D++F PV+ ++++ G + L LEIWTNGS++P+EA +ASR L+ F
Sbjct: 164 DSIFSPVKKVSYTVEKTRVGRRTDLDRLILEIWTNGSISPEEAFREASRILMEYFRLLNE 223
Query: 101 ----IPFLHVEEETFYLENNQHQVTLPFFPFHNRLVN 3
+P+ V+ E YLE + +TL R N
Sbjct: 224 KEFQLPYEEVKPENTYLEEEKKGLTLEDLGLSTRAYN 260
[243][TOP]
>UniRef100_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Thalassiosira
pseudonana RepID=RPOA_THAPS
Length = 313
Score = 80.9 bits (198), Expect = 4e-14
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDA 258
A I LPP +EII+ +IAT++ L IE KIE Y L S+ FED DA
Sbjct: 111 ASSIQLPPEIEIINPNHYIATISSSHILEIEFKIESGSKYRLANELFSDKFED-FIETDA 169
Query: 257 VFMPVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
+FMPV+ + + + Y N N +E L ++IWTNGS++P++A+ S +INLF
Sbjct: 170 IFMPVQKVDFKVENVYDNSNNIKERLLIDIWTNGSISPEQAIFSGSNLIINLF 222
[244][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 80.9 bits (198), Expect = 4e-14
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 8/123 (6%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSY 270
A + LP VE+I+ HIATL E L +E I R GY S M+ +F
Sbjct: 129 AEKLQLPSDVEVINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDF----L 184
Query: 269 PIDAVFMPVENANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPF 93
ID+VFMPV N+++ + G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P
Sbjct: 185 QIDSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAPL 244
Query: 92 LHV 84
V
Sbjct: 245 QEV 247
[245][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 80.5 bits (197), Expect = 5e-14
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Frame = -2
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPV 243
+P +E++D +Q++ATL++ L +E ++E+ +GY + S ID+VFMPV
Sbjct: 114 VPSEIEVVDPSQYVATLSDGSKLEMEFRVEKGKGYRAIERGKDDTTSLDFLQIDSVFMPV 173
Query: 242 ENANHSIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
N+S+ +G ++ L LEIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 174 TKVNYSVEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNE 229
[246][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 80.5 bits (197), Expect = 5e-14
Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Frame = -2
Query: 419 IILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVF 252
I P + ++D Q+IAT++ L +ELK+E++ GY K+ F +S PID++F
Sbjct: 116 IEFPLDITVVDPCQYIATISGNDYLEMELKVEKSSGY--KLVETFSKKSPLDFLPIDSIF 173
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
MPV+ N+ + + E L LE+WTNGSL+P+++++ AS NL+ LF P
Sbjct: 174 MPVKKVNYYVEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[247][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 80.1 bits (196), Expect = 7e-14
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Frame = -2
Query: 407 PAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVEN 237
P VE+I+ +IATL+ L +E KIE+ +GY E S IDA+FMPV
Sbjct: 115 PDVEVINLDHYIATLSADATLEMEFKIEQGKGYRAIERGKDESASLDFLQIDAIFMPVRK 174
Query: 236 ANHSIHSYGNGN-EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
N+++ +G +++ L LEIWTNGSLTP+EAL+Q + L++LF P V
Sbjct: 175 VNYTVEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLKDV 226
[248][TOP]
>UniRef100_Q8DML0 DNA-directed RNA polymerase subunit alpha n=1
Tax=Thermosynechococcus elongatus BP-1 RepID=RPOA_THEEB
Length = 321
Score = 79.3 bits (194), Expect = 1e-13
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 13/123 (10%)
Frame = -2
Query: 401 VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENA 234
VE+++ +IATL L +E KIE++RGY + +DR +DAVFMPV
Sbjct: 121 VEVVNPNHYIATLMPGATLEMEFKIEKDRGYR-SVERVRDDRLALDYLQLDAVFMPVRRV 179
Query: 233 NHSIHSYGNGNEK-----QEILFLEIWTNGSLTPKEALHQASRNLINLFIPF----LHVE 81
N+++ S + + Q+ L LEIWTNGSLTP++AL+QA+ L++LF P LH
Sbjct: 180 NYTVDSVRSAGAEGDRQLQDYLKLEIWTNGSLTPQDALNQAATILVDLFSPLKEVPLHTS 239
Query: 80 EET 72
E T
Sbjct: 240 EAT 242
[249][TOP]
>UniRef100_Q6J227 RNA polymerase alpha subunit (Fragment) n=1 Tax=Corethron hystrix
RepID=Q6J227_9STRA
Length = 301
Score = 78.6 bits (192), Expect = 2e-13
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS--YPIDAV 255
A I LP +EI++ Q+IAT++ + L +E K E GY L E S IDAV
Sbjct: 112 ANAIQLPTELEILNPNQYIATISRSMILEMEFKFESGIGYRLVNQTKMESSSDFLEIDAV 171
Query: 254 FMPVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
FMPV+ + + + Y E L ++IWTNGS++P+ AL+++S N+I LF
Sbjct: 172 FMPVQKVDFKVENIYDKNKHISENLIIDIWTNGSISPETALYESSNNIIELF 223
[250][TOP]
>UniRef100_Q31L30 DNA-directed RNA polymerase subunit alpha n=2 Tax=Synechococcus
elongatus RepID=RPOA_SYNE7
Length = 309
Score = 78.6 bits (192), Expect = 2e-13
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Frame = -2
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDA 258
A D+ P VE+I+ +IA+L+E L +ELK+E GY ++ E + +DA
Sbjct: 108 AADVDFGPEVEVINPNHYIASLSEGATLEMELKVEWGTGYRAIDRSHDETTALDFLQLDA 167
Query: 257 VFMPVENANHSIHSYGNGNEKQ-EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
VFMPV N+S+ G + L LE+WTNGSL+P+EAL QA+ L+ LF P +V
Sbjct: 168 VFMPVRRVNYSVEDARVGESTAIDRLVLEVWTNGSLSPQEALSQAASCLVALFEPLKNV 226