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[1][TOP]
>UniRef100_Q9FJR0 Regulator of nonsense transcripts 1 homolog n=1 Tax=Arabidopsis
thaliana RepID=RENT1_ARATH
Length = 1254
Score = 365 bits (936), Expect = 1e-99
Identities = 169/169 (100%), Positives = 169/169 (100%)
Frame = +2
Query: 2 GRAGGSYLPSGPPNGARPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRGPVGAVPHAPQ 181
GRAGGSYLPSGPPNGARPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRGPVGAVPHAPQ
Sbjct: 973 GRAGGSYLPSGPPNGARPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRGPVGAVPHAPQ 1032
Query: 182 PGNHGFGAGRGTSVGGHLPHQQATQHNVGTIGPSLNFPLDSPNSQPSPGGPLSQPGYGSQ 361
PGNHGFGAGRGTSVGGHLPHQQATQHNVGTIGPSLNFPLDSPNSQPSPGGPLSQPGYGSQ
Sbjct: 1033 PGNHGFGAGRGTSVGGHLPHQQATQHNVGTIGPSLNFPLDSPNSQPSPGGPLSQPGYGSQ 1092
Query: 362 AFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDYAT 508
AFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDYAT
Sbjct: 1093 AFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDYAT 1141
[2][TOP]
>UniRef100_UPI0001982C9A PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001982C9A
Length = 1264
Score = 253 bits (645), Expect = 7e-66
Identities = 123/182 (67%), Positives = 143/182 (78%), Gaps = 14/182 (7%)
Frame = +2
Query: 5 RAGGSYLPSGPPNGA-RPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG----PVGAVP 169
R GSY+PSGPPNG +PG+HPAG+P+PRVPL PF GGPPSQPYAIPTRG PVGAVP
Sbjct: 960 RGRGSYMPSGPPNGTHKPGVHPAGFPMPRVPLPPFHGGPPSQPYAIPTRGAVHGPVGAVP 1019
Query: 170 HAPQPGNHGFGAGRGTS---VGGHLPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPL 337
H P PG+ GFGAGRG + +G HLPHQQ +Q VG +G + NFP L++PNSQPS GGPL
Sbjct: 1020 HVPPPGSRGFGAGRGNAGAPIGSHLPHQQGSQQAVGNLGSTFNFPALENPNSQPSVGGPL 1079
Query: 338 SQPGY-----GSQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDY 502
SQPG+ SQ FRDGFS+GG+SQDFL DD KSQGSH PYN+ADF+TQAS G+ +DY
Sbjct: 1080 SQPGFMPVQGPSQTFRDGFSIGGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSGYTLDY 1139
Query: 503 AT 508
AT
Sbjct: 1140 AT 1141
[3][TOP]
>UniRef100_A7PCF0 Chromosome chr2 scaffold_11, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PCF0_VITVI
Length = 1267
Score = 251 bits (642), Expect = 2e-65
Identities = 123/185 (66%), Positives = 143/185 (77%), Gaps = 17/185 (9%)
Frame = +2
Query: 5 RAGGSYLPSGPPNGA-RPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG----PVGAVP 169
R GSY+PSGPPNG +PG+HPAG+P+PRVPL PF GGPPSQPYAIPTRG PVGAVP
Sbjct: 960 RGRGSYMPSGPPNGTHKPGVHPAGFPMPRVPLPPFHGGPPSQPYAIPTRGAVHGPVGAVP 1019
Query: 170 HAPQPGNHGFGAGRGTS---VGGHLPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPL 337
H P PG+ GFGAGRG + +G HLPHQQ +Q VG +G + NFP L++PNSQPS GGPL
Sbjct: 1020 HVPPPGSRGFGAGRGNAGAPIGSHLPHQQGSQQAVGNLGSTFNFPALENPNSQPSVGGPL 1079
Query: 338 SQPGY--------GSQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFA 493
SQPG+ SQ FRDGFS+GG+SQDFL DD KSQGSH PYN+ADF+TQAS G+
Sbjct: 1080 SQPGFVTNMPVQGPSQTFRDGFSIGGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSGYT 1139
Query: 494 VDYAT 508
+DYAT
Sbjct: 1140 LDYAT 1144
[4][TOP]
>UniRef100_B9SS25 Nonsense-mediated mRNA decay protein, putative n=1 Tax=Ricinus
communis RepID=B9SS25_RICCO
Length = 1280
Score = 247 bits (630), Expect = 4e-64
Identities = 120/185 (64%), Positives = 141/185 (76%), Gaps = 17/185 (9%)
Frame = +2
Query: 5 RAGGSYLPSGPPNGA-RPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG----PVGAVP 169
R GSY+P GPPNG +P +HP G+P+PRVP+ PF GGPPSQPYAIPTRG PVGAVP
Sbjct: 982 RGRGSYMPPGPPNGTHKPSVHPTGFPMPRVPVPPFHGGPPSQPYAIPTRGAVHGPVGAVP 1041
Query: 170 HAPQPGNHGFGAGRGTS---VGGHLPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPL 337
H P PG+ GFGAGRG + +G HL HQQ+TQ +G +G + NFP L++PNSQPS GGPL
Sbjct: 1042 HVPSPGSRGFGAGRGNAGAPIGSHLSHQQSTQQTIGNMGSTFNFPALENPNSQPSVGGPL 1101
Query: 338 SQPGY--------GSQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFA 493
SQPGY SQ+FRDGFS+GG+SQDFL DD KSQGSH PYN+ADF+TQAS G+A
Sbjct: 1102 SQPGYVNNMPVQGPSQSFRDGFSVGGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSGYA 1161
Query: 494 VDYAT 508
VDY T
Sbjct: 1162 VDYVT 1166
[5][TOP]
>UniRef100_A9PJK5 Putative uncharacterized protein n=1 Tax=Populus trichocarpa x
Populus deltoides RepID=A9PJK5_9ROSI
Length = 582
Score = 238 bits (608), Expect = 1e-61
Identities = 120/184 (65%), Positives = 137/184 (74%), Gaps = 16/184 (8%)
Frame = +2
Query: 5 RAGGSYLPSGPPNGA-RPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG----PVGAVP 169
RA GSY+P PPNG +PG HPAG+P+PRVP+ PF G PPSQPYAIPTRG P+GAVP
Sbjct: 285 RARGSYMPPAPPNGTHKPGAHPAGFPMPRVPIPPFHGDPPSQPYAIPTRGAVHGPIGAVP 344
Query: 170 HAPQPGNHGFGAGRGTS---VGGHLPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPL 337
PQPG+ GFGAGRG + +G HLPHQQ TQ +G IG S NF L++PNSQPS G L
Sbjct: 345 QVPQPGSRGFGAGRGNAGAPIGSHLPHQQGTQQGIGNIG-SFNFSSLENPNSQPSVGSAL 403
Query: 338 SQPGYG-------SQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAV 496
SQPGY SQ FRDGFSMGG+SQ+FL DD KSQGSH PYN+ADF+TQAS G+AV
Sbjct: 404 SQPGYNNIPVQGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFSTQASQSGYAV 463
Query: 497 DYAT 508
DY T
Sbjct: 464 DYVT 467
[6][TOP]
>UniRef100_B9MTW9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTW9_POPTR
Length = 1256
Score = 237 bits (604), Expect = 4e-61
Identities = 120/184 (65%), Positives = 136/184 (73%), Gaps = 16/184 (8%)
Frame = +2
Query: 5 RAGGSYLPSGPPNGA-RPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG----PVGAVP 169
RA GSY+P PPNG +PG HPAG+P+PRVP+ PF G PPSQPYAIPTRG P+GAVP
Sbjct: 959 RARGSYMPPAPPNGTHKPGAHPAGFPMPRVPIPPFHGDPPSQPYAIPTRGAVHGPIGAVP 1018
Query: 170 HAPQPGNHGFGAGRGTS---VGGHLPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPL 337
PQPG GFGAGRG + +G HLPHQQ TQ +G IG S NF L++PNSQPS G L
Sbjct: 1019 QVPQPGIRGFGAGRGNAGAPIGSHLPHQQGTQQGIGNIG-SFNFSSLENPNSQPSVGSAL 1077
Query: 338 SQPGYG-------SQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAV 496
SQPGY SQ FRDGFSMGG+SQ+FL DD KSQGSH PYN+ADF+TQAS G+AV
Sbjct: 1078 SQPGYNNIPVQGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFSTQASQSGYAV 1137
Query: 497 DYAT 508
DY T
Sbjct: 1138 DYVT 1141
[7][TOP]
>UniRef100_Q0D6B1 Os07g0495900 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group
RepID=Q0D6B1_ORYSJ
Length = 1121
Score = 208 bits (529), Expect = 2e-52
Identities = 106/181 (58%), Positives = 130/181 (71%), Gaps = 16/181 (8%)
Frame = +2
Query: 11 GGSYLPSGPPNGA-RPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG----PVGAVPHA 175
G S++P GPPNGA +PG+HP+GYP+PR+P PF G SQPYAIPTRG P+GAVP
Sbjct: 845 GHSFVPFGPPNGAHKPGVHPSGYPLPRMPFPPFAGAH-SQPYAIPTRGSLHGPIGAVPPV 903
Query: 176 PQPGNHGFG--AGRGTSVGGHLPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPLSQP 346
PQPGN FG G +GGHL HQQ++Q +G +G + NFP L++P+SQPS GGP+SQ
Sbjct: 904 PQPGNRNFGPRGNTGGPIGGHLAHQQSSQQAMGGMGSAFNFPGLENPSSQPSGGGPMSQT 963
Query: 347 GYG--------SQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDY 502
G SQ FRDGFS+GG+SQDF DD KSQGSH YN+ADF+TQAS GG+ VDY
Sbjct: 964 GLMTQMPVQGLSQTFRDGFSIGGMSQDFFGDDFKSQGSHVAYNIADFSTQASQGGYGVDY 1023
Query: 503 A 505
+
Sbjct: 1024 S 1024
[8][TOP]
>UniRef100_B8B6D2 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8B6D2_ORYSI
Length = 1277
Score = 208 bits (529), Expect = 2e-52
Identities = 106/181 (58%), Positives = 130/181 (71%), Gaps = 16/181 (8%)
Frame = +2
Query: 11 GGSYLPSGPPNGA-RPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG----PVGAVPHA 175
G S++P GPPNGA +PG+HP+GYP+PR+P PF G SQPYAIPTRG P+GAVP
Sbjct: 1001 GHSFVPFGPPNGAHKPGVHPSGYPLPRMPFPPFAGAH-SQPYAIPTRGSLHGPIGAVPPV 1059
Query: 176 PQPGNHGFG--AGRGTSVGGHLPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPLSQP 346
PQPGN FG G +GGHL HQQ++Q +G +G + NFP L++P+SQPS GGP+SQ
Sbjct: 1060 PQPGNRNFGPRGNTGGPIGGHLAHQQSSQQAMGGMGSAFNFPGLENPSSQPSGGGPMSQT 1119
Query: 347 GYG--------SQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDY 502
G SQ FRDGFS+GG+SQDF DD KSQGSH YN+ADF+TQAS GG+ VDY
Sbjct: 1120 GLMTQMPVQGLSQTFRDGFSIGGMSQDFFGDDFKSQGSHVAYNIADFSTQASQGGYGVDY 1179
Query: 503 A 505
+
Sbjct: 1180 S 1180
[9][TOP]
>UniRef100_C5X9A0 Putative uncharacterized protein Sb02g033940 n=1 Tax=Sorghum bicolor
RepID=C5X9A0_SORBI
Length = 1269
Score = 199 bits (506), Expect = 9e-50
Identities = 100/180 (55%), Positives = 126/180 (70%), Gaps = 16/180 (8%)
Frame = +2
Query: 11 GGSYLPSGPPNGA-RPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG---PVGAVPHAP 178
G S++P GPPNG +PG+HPAGY +PR+P PFPG P SQPY IPTRG P+GAVP
Sbjct: 991 GQSFVPYGPPNGVHKPGVHPAGYAVPRMPFPPFPGAPHSQPYTIPTRGLHGPIGAVPPVH 1050
Query: 179 QPGNHGFGAGR---GTSVGGHLPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPLSQP 346
QPG+ FGA R G +GGHL HQQ +Q +G IG + N+ +++P+SQPS G +SQ
Sbjct: 1051 QPGSRNFGAPRSNTGGPIGGHLAHQQNSQQAMGGIGSNFNYTGMENPSSQPSGGAQMSQT 1110
Query: 347 GYG--------SQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDY 502
G SQ FRDGFS+GG+SQDF DD KSQGSH PYN+A+F+TQAS GG+ V++
Sbjct: 1111 GLMTQMPVQGLSQTFRDGFSIGGMSQDFFVDDFKSQGSHVPYNIAEFSTQASQGGYGVEF 1170
[10][TOP]
>UniRef100_B9N2T2 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9N2T2_POPTR
Length = 1242
Score = 198 bits (504), Expect = 2e-49
Identities = 105/177 (59%), Positives = 122/177 (68%), Gaps = 9/177 (5%)
Frame = +2
Query: 5 RAGGSYLPSGPPNGA-RPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG----PVGAVP 169
R+ GSYL GPPNG +PG+ AG+P+PRVP+ PF GPPSQPYAIPTRG P+GAVP
Sbjct: 970 RSRGSYLSPGPPNGTHKPGV--AGFPMPRVPIPPFHDGPPSQPYAIPTRGAVHGPIGAVP 1027
Query: 170 HAPQPGNHGFGAGRGTS---VGGHLPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPL 337
P PG+ GF AGRG + +G HL HQQ Q +G IG S NFP L++PNSQPS GGPL
Sbjct: 1028 QVPPPGSRGFSAGRGNAGAPIGSHLSHQQGNQQGIGNIG-SFNFPALENPNSQPSVGGPL 1086
Query: 338 SQPGYGSQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDYAT 508
SQPGY +FL DD KSQGSH PYN+ADF+TQAS GG+AVDY T
Sbjct: 1087 SQPGY----------------EFLGDDFKSQGSHVPYNVADFSTQASQGGYAVDYVT 1127
[11][TOP]
>UniRef100_Q7F191 Regulator of nonsense transcripts 1 homolog-like protein n=1
Tax=Oryza sativa Japonica Group RepID=Q7F191_ORYSJ
Length = 303
Score = 185 bits (469), Expect = 2e-45
Identities = 95/173 (54%), Positives = 119/173 (68%), Gaps = 8/173 (4%)
Frame = +2
Query: 11 GGSYLPSGPPNGA-RPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG----PVGAVPHA 175
G S++P GPPNGA +PG+HP+GYP+PR+P PF G SQPYAIPTRG P+GAVP
Sbjct: 48 GHSFVPFGPPNGAHKPGVHPSGYPLPRMPFPPFAGAH-SQPYAIPTRGSLHGPIGAVPPV 106
Query: 176 PQPGNHGFG--AGRGTSVGGHLPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPLSQP 346
PQPGN FG G +GGHL HQQ++Q +G +G + NFP L++P+SQPS GGP+SQ
Sbjct: 107 PQPGNRNFGPRGNTGGPIGGHLAHQQSSQQAMGGMGSAFNFPGLENPSSQPSGGGPMSQT 166
Query: 347 GYGSQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDYA 505
G ++QDF DD KSQGSH YN+ADF+TQAS GG+ VDY+
Sbjct: 167 GL-------------MTQDFFGDDFKSQGSHVAYNIADFSTQASQGGYGVDYS 206
[12][TOP]
>UniRef100_C0PEU1 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C0PEU1_MAIZE
Length = 252
Score = 162 bits (411), Expect = 9e-39
Identities = 83/153 (54%), Positives = 106/153 (69%), Gaps = 15/153 (9%)
Frame = +2
Query: 89 VPLSPFPGGPPSQPYAIPTRG---PVGAVPHAPQPGNHGFGAGR---GTSVGGHLPHQQA 250
+P PFPG P SQPYAIPTRG P+GAVP QPG+ FG+ R G +GGHL HQQ
Sbjct: 1 MPFPPFPGAPHSQPYAIPTRGLHGPLGAVPPVHQPGSRNFGSARSNTGGPIGGHLAHQQN 60
Query: 251 TQHNVGTIGPSLNFP-LDSPNSQPSPGGPLSQPGYG--------SQAFRDGFSMGGISQD 403
+Q +G+IG + N+ +++P+SQPS G +SQ G SQ FRDGFS+GG+SQD
Sbjct: 61 SQQAMGSIGSNFNYTGMENPSSQPSGGAQMSQTGLMTQVPVQGLSQTFRDGFSIGGMSQD 120
Query: 404 FLADDIKSQGSHDPYNMADFATQASPGGFAVDY 502
F DD KSQGSH PYN+A+F+TQAS GG+ V++
Sbjct: 121 FFVDDFKSQGSHVPYNIAEFSTQASQGGYGVEF 153
[13][TOP]
>UniRef100_C0HDY9 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C0HDY9_MAIZE
Length = 252
Score = 157 bits (396), Expect = 5e-37
Identities = 82/153 (53%), Positives = 104/153 (67%), Gaps = 15/153 (9%)
Frame = +2
Query: 89 VPLSPFPGGPPSQPYAIPTRG---PVGAVPHAPQPGNHGFGAGR---GTSVGGHLPHQQA 250
+P PFPG P SQPYAIPTRG P+GAVP QPG+ FGA R G +GGHL HQQ
Sbjct: 1 MPFPPFPGAPHSQPYAIPTRGLHGPIGAVPPVHQPGSRSFGAPRSNTGGPIGGHLAHQQN 60
Query: 251 TQHNVGTIGPSLNFP-LDSPNSQPSPGGPLSQPGYG--------SQAFRDGFSMGGISQD 403
+Q +G IG + N+ +++ +SQPS +SQ G SQ FRDGFS+GG+SQD
Sbjct: 61 SQQAMGGIGSNFNYAGMENSSSQPSGVAQMSQSGLMTQMPVQGLSQTFRDGFSIGGMSQD 120
Query: 404 FLADDIKSQGSHDPYNMADFATQASPGGFAVDY 502
F+ DD KSQGSH PYN+A+F+TQAS GG+ V++
Sbjct: 121 FIVDDFKSQGSHVPYNIAEFSTQASQGGYGVEF 153
[14][TOP]
>UniRef100_UPI00016213F4 predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=UPI00016213F4
Length = 1610
Score = 136 bits (343), Expect = 7e-31
Identities = 79/160 (49%), Positives = 98/160 (61%), Gaps = 16/160 (10%)
Frame = +2
Query: 77 PIPRVPLSPFPGGPPSQPYAIPTRG----PVGAVPHAPQPGNHGFGAGRGTS---VGGHL 235
P VPL+ FP P +QPYAIP+RG P+GAVP PQ G+ GFGAGRG++ +GGHL
Sbjct: 1253 PSRGVPLTGFPSTPLTQPYAIPSRGGMHGPIGAVPQVPQAGSRGFGAGRGSTSGPIGGHL 1312
Query: 236 PHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPLSQPGYG--------SQAFRDGFSMG 388
Q Q G +G + F LDSP +Q S GGP++Q G SQ RDGF +G
Sbjct: 1313 SQHQTPQQQ-GALGGAFQFGGLDSPATQASAGGPMTQQGIMTQMQTQTLSQNLRDGFGLG 1371
Query: 389 GISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDYAT 508
G+SQDF +D KSQGSH Y +FATQ G F +DY+T
Sbjct: 1372 GMSQDFFGEDFKSQGSHVGYAGHEFATQ---GAFGMDYST 1408
[15][TOP]
>UniRef100_C2A7B5 DNA polymerase III, subunit gamma/tau n=1 Tax=Thermomonospora
curvata DSM 43183 RepID=C2A7B5_THECU
Length = 715
Score = 54.7 bits (130), Expect = 4e-06
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Frame = +2
Query: 2 GRAGGSYLPSGPPNGARPGLHPAGYPIP--RVPLSPFPGGPPSQPYAIPTRGPVGAVPHA 175
G A + P+ P + P+ YP R P P PS A + PV AVP A
Sbjct: 414 GLAAPAAAPAWPSAESASRQAPSAYPTAPSRPPAPEPPAQGPSNQSAGASPAPVQAVPAA 473
Query: 176 PQPGNHGFGAGRGTSVGGHLPHQQATQHNVGTIGPSLNFPLDSPNSQPSPGGP 334
P+PG G+GA SVGG +P A +V + + P + ++ P+ GGP
Sbjct: 474 PRPGGAGWGAAATPSVGGGIPAPGAENRSVDNRWGAPSPPAPASSNAPAGGGP 526