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[1][TOP]
>UniRef100_Q9FPH1 At1g64860 n=1 Tax=Arabidopsis thaliana RepID=Q9FPH1_ARATH
Length = 502
Score = 191 bits (484), Expect = 3e-47
Identities = 95/95 (100%), Positives = 95/95 (100%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR
Sbjct: 408 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 467
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 214
IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN
Sbjct: 468 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[2][TOP]
>UniRef100_O24629 AT1G64860 protein n=2 Tax=Arabidopsis thaliana RepID=O24629_ARATH
Length = 502
Score = 191 bits (484), Expect = 3e-47
Identities = 95/95 (100%), Positives = 95/95 (100%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR
Sbjct: 408 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 467
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 214
IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN
Sbjct: 468 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[3][TOP]
>UniRef100_O22576 RNA polymerase sigma subunit 1 n=1 Tax=Arabidopsis thaliana
RepID=O22576_ARATH
Length = 502
Score = 191 bits (484), Expect = 3e-47
Identities = 95/95 (100%), Positives = 95/95 (100%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR
Sbjct: 408 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 467
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 214
IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN
Sbjct: 468 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[4][TOP]
>UniRef100_O22057 Plastid RNA polymerase sigma-subunit n=1 Tax=Arabidopsis thaliana
RepID=O22057_ARATH
Length = 502
Score = 191 bits (484), Expect = 3e-47
Identities = 95/95 (100%), Positives = 95/95 (100%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR
Sbjct: 408 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 467
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 214
IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN
Sbjct: 468 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[5][TOP]
>UniRef100_O49935 Sig1 protein n=1 Tax=Sinapis alba RepID=O49935_SINAL
Length = 481
Score = 180 bits (457), Expect = 4e-44
Identities = 89/95 (93%), Positives = 92/95 (96%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIAD RLENNPWHGYD LALK+EVSKLIS TLGERE+EIIRLYYGLDKECLTWEDIS+R
Sbjct: 387 SYIADNRLENNPWHGYDALALKDEVSKLISVTLGEREREIIRLYYGLDKECLTWEDISQR 446
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 214
IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN
Sbjct: 447 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 481
[6][TOP]
>UniRef100_UPI0001984E9A PREDICTED: hypothetical protein isoform 2 n=1 Tax=Vitis vinifera
RepID=UPI0001984E9A
Length = 496
Score = 162 bits (409), Expect = 1e-38
Identities = 78/94 (82%), Positives = 88/94 (93%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIAD RLENNPWHG D+ ALK+EV+KLI+ TLGERE++IIRLYYGLD ECLTWEDISKR
Sbjct: 402 SYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKR 461
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 217
IGLSRERVRQVGLVALEKLK+AARK +MEAM++K
Sbjct: 462 IGLSRERVRQVGLVALEKLKNAARKGRMEAMLVK 495
[7][TOP]
>UniRef100_UPI0001984E99 PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vinifera
RepID=UPI0001984E99
Length = 507
Score = 162 bits (409), Expect = 1e-38
Identities = 78/94 (82%), Positives = 88/94 (93%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIAD RLENNPWHG D+ ALK+EV+KLI+ TLGERE++IIRLYYGLD ECLTWEDISKR
Sbjct: 413 SYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKR 472
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 217
IGLSRERVRQVGLVALEKLK+AARK +MEAM++K
Sbjct: 473 IGLSRERVRQVGLVALEKLKNAARKGRMEAMLVK 506
[8][TOP]
>UniRef100_A7PAZ2 Chromosome chr16 scaffold_10, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PAZ2_VITVI
Length = 486
Score = 162 bits (409), Expect = 1e-38
Identities = 78/94 (82%), Positives = 88/94 (93%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIAD RLENNPWHG D+ ALK+EV+KLI+ TLGERE++IIRLYYGLD ECLTWEDISKR
Sbjct: 392 SYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKR 451
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 217
IGLSRERVRQVGLVALEKLK+AARK +MEAM++K
Sbjct: 452 IGLSRERVRQVGLVALEKLKNAARKGRMEAMLVK 485
[9][TOP]
>UniRef100_B9I6T5 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6T5_POPTR
Length = 499
Score = 161 bits (407), Expect = 2e-38
Identities = 78/95 (82%), Positives = 88/95 (92%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIAD RLENNPWHG D+ ALKEEV+KLI + L ERE+EIIRLY+GLDKECLTWEDISKR
Sbjct: 405 SYIADNRLENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLYHGLDKECLTWEDISKR 464
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 214
+GLSRERVRQVGLVALEKLKHAARK K+EAM++K+
Sbjct: 465 MGLSRERVRQVGLVALEKLKHAARKGKLEAMLVKH 499
[10][TOP]
>UniRef100_B9IPY1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPY1_POPTR
Length = 509
Score = 159 bits (403), Expect = 7e-38
Identities = 78/95 (82%), Positives = 87/95 (91%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIAD R ENNPWHG D+ ALKEEV+KLI +TL EREKEIIRLY+GLD+ECLTWEDISKR
Sbjct: 415 SYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKR 474
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 214
+GLSRERVRQVGLVALEKLKHAARKR EAM++K+
Sbjct: 475 MGLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509
[11][TOP]
>UniRef100_B9SDF8 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9SDF8_RICCO
Length = 508
Score = 158 bits (400), Expect = 2e-37
Identities = 78/95 (82%), Positives = 87/95 (91%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIAD LENNPWHG DD ALK+EV+KLI+ TL ERE+EIIRLYYGLD E LTWEDISKR
Sbjct: 414 SYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKR 473
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 214
IGLSRERVRQVGLVALEKLKHAARK+K+EAM++K+
Sbjct: 474 IGLSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508
[12][TOP]
>UniRef100_Q9SLX4 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX4_TOBAC
Length = 508
Score = 157 bits (398), Expect = 3e-37
Identities = 76/94 (80%), Positives = 86/94 (91%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIAD LENNPWHG D ALK+EV+ LIS+TL +RE+EIIRLYYGLD ECLTWEDISKR
Sbjct: 414 SYIADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKR 473
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 217
IGLSRERVRQVGLVALEKLKHAARKR+++AM++K
Sbjct: 474 IGLSRERVRQVGLVALEKLKHAARKRQLDAMLIK 507
[13][TOP]
>UniRef100_Q9SLX3 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX3_TOBAC
Length = 502
Score = 156 bits (394), Expect = 8e-37
Identities = 74/95 (77%), Positives = 87/95 (91%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYIAD RLEN PWHG D+ LK+EV+ LIS+TL ERE+EI+RLYYGLD ECLTWEDIS+R
Sbjct: 408 SYIADNRLENIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLTWEDISRR 467
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 214
IGLSRERVRQVGLVALEKLKHAARKR+++AM++K+
Sbjct: 468 IGLSRERVRQVGLVALEKLKHAARKRRLDAMLVKH 502
[14][TOP]
>UniRef100_Q7EY08 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
Japonica Group RepID=Q7EY08_ORYSJ
Length = 388
Score = 133 bits (335), Expect = 6e-30
Identities = 58/92 (63%), Positives = 81/92 (88%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG+++ LKEEV+KL+++TL ERE++IIRLY+G+ K+C TWEDIS++
Sbjct: 294 SYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQ 353
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQVGL+A+EKLKHAAR++ +EA++
Sbjct: 354 FGLSRERVRQVGLIAMEKLKHAARRKNLEALL 385
[15][TOP]
>UniRef100_Q0J7T6 Os08g0163400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q0J7T6_ORYSJ
Length = 520
Score = 133 bits (335), Expect = 6e-30
Identities = 58/92 (63%), Positives = 81/92 (88%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG+++ LKEEV+KL+++TL ERE++IIRLY+G+ K+C TWEDIS++
Sbjct: 426 SYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQ 485
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQVGL+A+EKLKHAAR++ +EA++
Sbjct: 486 FGLSRERVRQVGLIAMEKLKHAARRKNLEALL 517
[16][TOP]
>UniRef100_O48655 Plastid RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
Group RepID=O48655_ORYSJ
Length = 519
Score = 133 bits (335), Expect = 6e-30
Identities = 58/92 (63%), Positives = 81/92 (88%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG+++ LKEEV+KL+++TL ERE++IIRLY+G+ K+C TWEDIS++
Sbjct: 425 SYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQ 484
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQVGL+A+EKLKHAAR++ +EA++
Sbjct: 485 FGLSRERVRQVGLIAMEKLKHAARRKNLEALL 516
[17][TOP]
>UniRef100_A3BPX7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BPX7_ORYSJ
Length = 420
Score = 133 bits (335), Expect = 6e-30
Identities = 58/92 (63%), Positives = 81/92 (88%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG+++ LKEEV+KL+++TL ERE++IIRLY+G+ K+C TWEDIS++
Sbjct: 326 SYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQ 385
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQVGL+A+EKLKHAAR++ +EA++
Sbjct: 386 FGLSRERVRQVGLIAMEKLKHAARRKNLEALL 417
[18][TOP]
>UniRef100_Q7EY07 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
RepID=Q7EY07_ORYSJ
Length = 342
Score = 133 bits (335), Expect = 6e-30
Identities = 58/92 (63%), Positives = 81/92 (88%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG+++ LKEEV+KL+++TL ERE++IIRLY+G+ K+C TWEDIS++
Sbjct: 248 SYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQ 307
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQVGL+A+EKLKHAAR++ +EA++
Sbjct: 308 FGLSRERVRQVGLIAMEKLKHAARRKNLEALL 339
[19][TOP]
>UniRef100_C5YHG2 Putative uncharacterized protein Sb07g004340 n=1 Tax=Sorghum
bicolor RepID=C5YHG2_SORBI
Length = 500
Score = 131 bits (329), Expect = 3e-29
Identities = 58/92 (63%), Positives = 80/92 (86%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG+++ LKEEV+ LI++TL ERE++IIRLY+G+ K+C TWEDIS++
Sbjct: 406 SYIEDQNVANDPWHGFEERYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQ 465
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQVGLVA+EKLKHAAR++ ++A++
Sbjct: 466 FGLSRERVRQVGLVAMEKLKHAARRKHLDALL 497
[20][TOP]
>UniRef100_Q9ZTI3 RNA polymerase sigma factor 1 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI3_MAIZE
Length = 398
Score = 130 bits (327), Expect = 5e-29
Identities = 58/92 (63%), Positives = 79/92 (85%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG+++ LKEEV+ LI++TL ERE++IIRLY+G+ K+C TWEDIS++
Sbjct: 304 SYIEDQNVANDPWHGFEERYLKEEVNSLINSTLNERERDIIRLYHGIGKQCHTWEDISRQ 363
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQVGLVA+EKLKHAAR+ ++A++
Sbjct: 364 FGLSRERVRQVGLVAMEKLKHAARREHLDALL 395
[21][TOP]
>UniRef100_B4FP19 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FP19_MAIZE
Length = 496
Score = 130 bits (327), Expect = 5e-29
Identities = 58/92 (63%), Positives = 79/92 (85%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG+++ LKEEV+ LI++TL ERE++IIRLY+G+ K+C TWEDIS++
Sbjct: 402 SYIEDQNVANDPWHGFEERYLKEEVNSLINSTLNERERDIIRLYHGIGKQCHTWEDISRQ 461
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQVGLVA+EKLKHAAR+ ++A++
Sbjct: 462 FGLSRERVRQVGLVAMEKLKHAARREHLDALL 493
[22][TOP]
>UniRef100_O24348 Plastid RNA polymerase sigma factor n=1 Tax=Sorghum bicolor
RepID=O24348_SORBI
Length = 500
Score = 129 bits (324), Expect = 1e-28
Identities = 57/92 (61%), Positives = 79/92 (85%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG+++ LKEEV+ LI++ L ERE++IIRLY+G+ K+C TWEDIS++
Sbjct: 406 SYIEDQNVANDPWHGFEERYLKEEVNNLINSNLNERERDIIRLYHGIGKQCHTWEDISRQ 465
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQVGLVA+EKLKHAAR++ ++A++
Sbjct: 466 FGLSRERVRQVGLVAMEKLKHAARRKHLDALL 497
[23][TOP]
>UniRef100_Q9ZTI2 RNA polymerase sigma factor 2 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI2_MAIZE
Length = 349
Score = 127 bits (318), Expect = 5e-28
Identities = 56/92 (60%), Positives = 78/92 (84%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG++++ LKEEV+ LI++ L ERE++IIRLY+G+ K+C TWEDIS++
Sbjct: 255 SYIEDQNVANDPWHGFEEMYLKEEVNNLINSNLNERERDIIRLYHGIGKQCHTWEDISRQ 314
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQV LVA+EKLKHAAR++ + A++
Sbjct: 315 FGLSRERVRQVRLVAMEKLKHAARRKHLNALL 346
[24][TOP]
>UniRef100_Q9ZP70 Chloroplast sigma factor (Fragment) n=1 Tax=Triticum aestivum
RepID=Q9ZP70_WHEAT
Length = 461
Score = 125 bits (313), Expect = 2e-27
Identities = 54/92 (58%), Positives = 79/92 (85%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 319
SYI D + N+PWHG+++ LKEEV+KL+++ L ERE++II+LY+G+ K+C TWEDIS++
Sbjct: 367 SYIEDQNVANDPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYHGIGKQCHTWEDISRQ 426
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
GLSRERVRQVGL+A+EKLK AR++K++A++
Sbjct: 427 FGLSRERVRQVGLIAMEKLKQRARRKKLDALL 458
[25][TOP]
>UniRef100_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens
RepID=A9SW01_PHYPA
Length = 677
Score = 76.6 bits (187), Expect = 8e-13
Identities = 37/92 (40%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKE---CLTWEDI 328
S +AD +EN PW + + +K++V KL+++ LG RE++I+RL+YG+ +E ++ E I
Sbjct: 579 SLVADRDIENQPWTIVERMLMKDDVDKLLTSQLGPRERDIVRLHYGVGREDGSVMSLESI 638
Query: 327 SKRIGLSRERVRQVGLVALEKLKHAARKRKME 232
S R G+SRERVRQ+ A+ KL+ +R++ ++
Sbjct: 639 SYRYGVSRERVRQLETAAMRKLQIKSREQGLD 670
[26][TOP]
>UniRef100_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1Q6A4_9BACT
Length = 491
Score = 62.8 bits (151), Expect = 1e-08
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ K++ TL RE+EII+L +G+ D + E+I KR ++RER+RQ+ +AL KL
Sbjct: 415 LKEQIQKVLD-TLSYREREIIKLRFGISDGYTHSLEEIGKRFNITRERIRQIEAIALRKL 473
Query: 261 KHAARKRKMEAMI 223
+H R RK+E +
Sbjct: 474 QHPVRSRKLEGFL 486
[27][TOP]
>UniRef100_A5KKN8 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KKN8_9FIRM
Length = 273
Score = 62.0 bits (149), Expect = 2e-08
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = -1
Query: 486 DTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRIGL 310
+ R E P D L KEEV +L+ TL +REKE+I L +GL K+ T E+I + +G+
Sbjct: 194 EDRSETTPEDAMDVLVRKEEVQELLE-TLNDREKEVISLRFGLGKDRTYTLEEIGESLGI 252
Query: 309 SRERVRQVGLVALEKLKHAA 250
+RERVRQ+ A+EKL+ A
Sbjct: 253 TRERVRQIESKAMEKLRKKA 272
[28][TOP]
>UniRef100_C1ZU97 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodothermus
marinus DSM 4252 RepID=C1ZU97_RHOMR
Length = 279
Score = 61.6 bits (148), Expect = 3e-08
Identities = 35/82 (42%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = -1
Query: 474 ENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRER 298
+ +P G + +LK ++ + +S TL RE EIIRLY+G+ +E LT E+I +R GL+RER
Sbjct: 195 DTSPDEGLMEESLKIDIERALS-TLHPREAEIIRLYFGIGREHPLTLEEIGQRFGLTRER 253
Query: 297 VRQVGLVALEKLKHAARKRKME 232
VRQ+ AL KL+ R+ +++
Sbjct: 254 VRQIKEKALRKLRQKHRREELQ 275
[29][TOP]
>UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD
Length = 392
Score = 61.2 bits (147), Expect = 3e-08
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECL-TWEDISKRIGLSRERVR 292
NP+ + LKE++ +++ TL ERE+ ++R YGLD T E++ K ++RER+R
Sbjct: 310 NPYDATTRILLKEQLDEVLK-TLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIR 368
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +R++K+E
Sbjct: 369 QIEVKALRKLRHPSRRKKLE 388
[30][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V565_9FIRM
Length = 382
Score = 61.2 bits (147), Expect = 3e-08
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 9/94 (9%)
Frame = -1
Query: 486 DTRLEN--------NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWE 334
DTRL + +P L LKE++S++++ TL RE E++RL +GL D T E
Sbjct: 285 DTRLSDFIEDEAAPDPADAASMLLLKEQISEVLT-TLAPREAEVLRLRFGLVDGRSRTLE 343
Query: 333 DISKRIGLSRERVRQVGLVALEKLKHAARKRKME 232
++ + G++RER+RQ+ AL KL+H R RK++
Sbjct: 344 EVGQNFGVTRERIRQIEAKALRKLRHPVRLRKLQ 377
[31][TOP]
>UniRef100_C1A7K2 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27
RepID=C1A7K2_GEMAT
Length = 286
Score = 60.8 bits (146), Expect = 5e-08
Identities = 34/92 (36%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKR 319
Y+ DT + P D AL E + + + L ERE +I+RLY+G+D + +T E+I +
Sbjct: 196 YLPDT-VHPTPEDQTFDKALTEAIEESLGG-LKEREAKILRLYFGIDGADPMTLEEIGSQ 253
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
+G++RERVRQ+ AL +L+H +R + +E+ +
Sbjct: 254 LGITRERVRQIKEKALSRLRHVSRSKSLESFL 285
[32][TOP]
>UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii
F0254 RepID=C9MZ09_9FUSO
Length = 392
Score = 60.8 bits (146), Expect = 5e-08
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECL-TWEDISKRIGLSRERVR 292
NP+ + LKE++ +++ TL ERE+ ++R YGLD T E++ K ++RER+R
Sbjct: 310 NPYDATTRVLLKEQLDEVLK-TLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIR 368
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +R++K+E
Sbjct: 369 QIEVKALRKLRHPSRRKKLE 388
[33][TOP]
>UniRef100_C6W468 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Dyadobacter fermentans DSM 18053 RepID=C6W468_DYAFD
Length = 287
Score = 60.8 bits (146), Expect = 5e-08
Identities = 31/91 (34%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = -1
Query: 492 IADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRI 316
+ + LE+ P G + +L++EV + + TL +RE ++I LY+GL+ E +T E+I ++
Sbjct: 197 VLENDLEDKPDSGLVNESLRKEVQRAL-CTLTQREADVIALYFGLNGEHAMTLEEIGEKF 255
Query: 315 GLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
L+RERVRQ+ A+ +L+H +R + ++ +
Sbjct: 256 NLTRERVRQIKEKAIRRLRHVSRSKALKTYL 286
[34][TOP]
>UniRef100_B0ME78 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662
RepID=B0ME78_9FIRM
Length = 370
Score = 60.5 bits (145), Expect = 6e-08
Identities = 30/70 (42%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++S+++ TL ERE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 298 LKEQLSEVLG-TLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKALRKL 356
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 357 RHPSRSRKLK 366
[35][TOP]
>UniRef100_Q6AK94 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila
RepID=Q6AK94_DESPS
Length = 447
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/83 (37%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVR 292
+P+ + L V++++S TL +RE++IIRL +G+ +K T E+I KR +SRER+R
Sbjct: 365 SPYEAVQNRELSGRVTEILS-TLSDREEKIIRLRFGIGEKAEYTLEEIGKRFNVSRERIR 423
Query: 291 QVGLVALEKLKHAARKRKMEAMI 223
Q+ AL +L+H++R+ K++ +
Sbjct: 424 QIEKKALNRLRHSSRRDKLKFFV 446
[36][TOP]
>UniRef100_C9M9L0 RNA polymerase major sigma factor n=1 Tax=Jonquetella anthropi E3_33
E1 RepID=C9M9L0_9BACT
Length = 969
Score = 59.7 bits (143), Expect = 1e-07
Identities = 28/72 (38%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = -1
Query: 447 DLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVAL 271
D L+E++ ++++A L +RE+E++R +GL D T E++ +R G++RER+RQ+ AL
Sbjct: 894 DNLLQEQIEEMLNA-LSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKAL 952
Query: 270 EKLKHAARKRKM 235
KL+H +R +K+
Sbjct: 953 RKLRHPSRSKKL 964
[37][TOP]
>UniRef100_C4CVR1 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Spirosoma
linguale DSM 74 RepID=C4CVR1_9SPHI
Length = 287
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/85 (36%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = -1
Query: 474 ENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRIGLSRER 298
E+ P G + +L++EV + +S TL +RE ++I LY+GL+ E +T E+I ++ L+RER
Sbjct: 203 EDKPDSGLINDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKFNLTRER 261
Query: 297 VRQVGLVALEKLKHAARKRKMEAMI 223
VRQ+ A+ +L+H +R + ++ +
Sbjct: 262 VRQIKEKAIRRLRHTSRSKALKTYL 286
[38][TOP]
>UniRef100_C4C6T9 RNA polymerase sigma factor n=1 Tax=Sebaldella termitidis ATCC
33386 RepID=C4C6T9_9FUSO
Length = 387
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
NP+ + LKE++ ++ TL ERE+ ++R YGLD T E++ K ++RER+R
Sbjct: 305 NPYDATTRVLLKEQLDGVLK-TLSEREEMVLRYRYGLDDGSPKTLEEVGKIFNVTRERIR 363
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +R++K+E
Sbjct: 364 QIEVKALRKLRHPSRRKKLE 383
[39][TOP]
>UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
nucleatum RepID=Q8RE13_FUSNN
Length = 331
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 248 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 306
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +RK+K+E
Sbjct: 307 QIEVKALRKLRHPSRKKKLE 326
[40][TOP]
>UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33
RepID=D0BQ42_9FUSO
Length = 416
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 333 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 391
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +RK+K+E
Sbjct: 392 QIEVKALRKLRHPSRKKKLE 411
[41][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 59.3 bits (142), Expect = 1e-07
Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALE 268
+ LKE++ +++ TL ERE+ ++RL +GLD T E++ + G++RER+RQ+ AL
Sbjct: 301 MLLKEQLEEVLD-TLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALR 359
Query: 267 KLKHAARKRKME 232
KL+H +R RK++
Sbjct: 360 KLRHPSRSRKLK 371
[42][TOP]
>UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2
RepID=C7XNV3_9FUSO
Length = 418
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 335 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 393
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +RK+K+E
Sbjct: 394 QIEVKALRKLRHPSRKKKLE 413
[43][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 59.3 bits (142), Expect = 1e-07
Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIG-LSRERV 295
+P + + LKE+V +++S TL RE++++RL +GLD + T E++ K +G +SRERV
Sbjct: 191 DPVEELESMLLKEQVDEVLS-TLAPREEKVLRLRFGLDDGKIRTLEEVGKELGGISRERV 249
Query: 294 RQVGLVALEKLKHAARKRKMEAMI 223
RQ+ AL++L+H R R+++ +
Sbjct: 250 RQIETKALKRLRHPNRSRRLKEFL 273
[44][TOP]
>UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1
RepID=C3WX07_9FUSO
Length = 417
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 334 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 392
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +RK+K+E
Sbjct: 393 QIEVKALRKLRHPSRKKKLE 412
[45][TOP]
>UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium
RepID=C3WPP3_9FUSO
Length = 340
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 257 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 315
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +RK+K+E
Sbjct: 316 QIEVKALRKLRHPSRKKKLE 335
[46][TOP]
>UniRef100_A5TTP9 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
polymorphum ATCC 10953 RepID=A5TTP9_FUSNP
Length = 418
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 335 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 393
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +RK+K+E
Sbjct: 394 QIEVKALRKLRHPSRKKKLE 413
[47][TOP]
>UniRef100_Q1NXM5 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1
RepID=Q1NXM5_9DELT
Length = 442
Score = 58.9 bits (141), Expect = 2e-07
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
+P+ L E V+ ++S TL RE++IIRL +G+ ++ T E+I KR +SRER+R
Sbjct: 360 SPYEAVKGNQLAERVTTILS-TLSPREEKIIRLRFGIGEDAEYTLEEIGKRFNVSRERIR 418
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ AL +L+H++R+ K++
Sbjct: 419 QIEKKALNRLRHSSRREKLK 438
[48][TOP]
>UniRef100_C8R003 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R003_9DELT
Length = 445
Score = 58.9 bits (141), Expect = 2e-07
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
+P+ L E V+ ++S TL RE++IIRL +G+ ++ T E+I KR +SRER+R
Sbjct: 363 SPYEAVKGNQLAERVTTILS-TLSPREEKIIRLRFGIGEDAEYTLEEIGKRFNVSRERIR 421
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ AL +L+H++R+ K++
Sbjct: 422 QIEKKALNRLRHSSRREKLK 441
[49][TOP]
>UniRef100_C3WID8 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 2_1_31
RepID=C3WID8_9FUSO
Length = 269
Score = 58.9 bits (141), Expect = 2e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 186 SPYEATNRAILREELDGVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 244
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +RK+K+E
Sbjct: 245 QIEVKALRKLRHPSRKKKLE 264
[50][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
RepID=B0P3M7_9CLOT
Length = 363
Score = 58.9 bits (141), Expect = 2e-07
Identities = 29/70 (41%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 291 LKEQLDEVLG-TLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKALRKL 349
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 350 RHPSRSRKLK 359
[51][TOP]
>UniRef100_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV14_SULAA
Length = 282
Score = 58.5 bits (140), Expect = 2e-07
Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKEE +L++ L ERE+EII+L YGL+ E T E++ + +G+SRERVRQ+ AL+KL
Sbjct: 210 LKEEFERLLNV-LDEREREIIKLRYGLEGLEPKTLEEVGEMLGISRERVRQLEQRALKKL 268
Query: 261 KHAARKRKME 232
K A K+ ++
Sbjct: 269 KAVALKKHLQ 278
[52][TOP]
>UniRef100_A7HK63 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum
Rt17-B1 RepID=A7HK63_FERNB
Length = 372
Score = 58.2 bits (139), Expect = 3e-07
Identities = 27/72 (37%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
++EE+ KL+ TL +REK+++++ YGL + + +T E++ + G++RER+RQ+ + AL KL
Sbjct: 295 MREEIDKLLE-TLNDREKKVLKMRYGLYNGKPMTLEEVGQFFGVTRERIRQIEVKALRKL 353
Query: 261 KHAARKRKMEAM 226
+H +R R + +
Sbjct: 354 RHPSRSRYLRLL 365
[53][TOP]
>UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA
RepID=C6JGK6_9FIRM
Length = 375
Score = 58.2 bits (139), Expect = 3e-07
Identities = 29/70 (41%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++S TL +RE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 303 LKEQLVEVLS-TLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 362 RHPSRSRKLK 371
[54][TOP]
>UniRef100_C0ET20 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
RepID=C0ET20_9FIRM
Length = 367
Score = 58.2 bits (139), Expect = 3e-07
Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKEE+ + + A+L ERE+ +I+L +GLD + T E++ K ++RER+RQ+ AL KL
Sbjct: 295 LKEELEEAM-ASLTERERNVIKLRFGLDDGKTRTLEEVGKEFNVTRERIRQIEAKALRKL 353
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 354 RHPSRSRKLK 363
[55][TOP]
>UniRef100_C0CQD9 RNA polymerase sigma factor n=1 Tax=Blautia hydrogenotrophica DSM
10507 RepID=C0CQD9_9FIRM
Length = 374
Score = 58.2 bits (139), Expect = 3e-07
Identities = 29/70 (41%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++S TL +RE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 302 LKEQLVEVLS-TLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 360
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 361 RHPSRSRKLK 370
[56][TOP]
>UniRef100_C0BBA6 RNA polymerase sigma factor n=1 Tax=Coprococcus comes ATCC 27758
RepID=C0BBA6_9FIRM
Length = 371
Score = 58.2 bits (139), Expect = 3e-07
Identities = 29/69 (42%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++S TL ERE++++RL +G+ D T E++ K ++RER+RQ+ AL KL
Sbjct: 299 LKEQLDEVLS-TLTEREQKVLRLRFGMSDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 357
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 358 RHPSRSRKL 366
[57][TOP]
>UniRef100_B5CNX1 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CNX1_9FIRM
Length = 283
Score = 58.2 bits (139), Expect = 3e-07
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Frame = -1
Query: 492 IADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRI 316
+ + + P + L KEEVS+L++A L +REK++IRL YGL D + T E+I + +
Sbjct: 201 MVEDKASPTPEEAMNLLVQKEEVSELLNA-LNDREKQVIRLRYGLEDGKTHTLEEIGEEL 259
Query: 315 GLSRERVRQVGLVALEKLKHAARK 244
++RERVRQ+ A+EKL++ A +
Sbjct: 260 KVTRERVRQIESRAMEKLRNKAER 283
[58][TOP]
>UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583
RepID=C9L8C6_RUMHA
Length = 330
Score = 57.8 bits (138), Expect = 4e-07
Identities = 29/70 (41%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 258 LKEQLVEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 316
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 317 RHPSRSRKLK 326
[59][TOP]
>UniRef100_C6IUR4 RNA polymerase sigma factor rpoD n=1 Tax=Bacteroides sp. 1_1_6
RepID=C6IUR4_9BACE
Length = 286
Score = 57.8 bits (138), Expect = 4e-07
Identities = 27/73 (36%), Positives = 52/73 (71%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
+L E+ + +S TL EREKEII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTEREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 261 KHAARKRKMEAMI 223
+ + R + +++ +
Sbjct: 273 RQSNRSKLLKSYL 285
[60][TOP]
>UniRef100_B9YB48 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042
RepID=B9YB48_9FIRM
Length = 408
Score = 57.8 bits (138), Expect = 4e-07
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LK+E++ ++ L ERE++++RL +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 334 LKDEINNVLQG-LTEREEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIRQIEAKALRKL 392
Query: 261 KHAARKRKMEAMILKN 214
KH R +++ + KN
Sbjct: 393 KHPTRSKRLRDFVDKN 408
[61][TOP]
>UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174
RepID=A5ZYP8_9FIRM
Length = 330
Score = 57.8 bits (138), Expect = 4e-07
Identities = 29/70 (41%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 258 LKEQLIEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 316
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 317 RHPSRSRKLK 326
[62][TOP]
>UniRef100_A3HT44 RNA polymerase sigma factor rpoD (Sigma-A) n=1 Tax=Algoriphagus sp.
PR1 RepID=A3HT44_9SPHI
Length = 287
Score = 57.8 bits (138), Expect = 4e-07
Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = -1
Query: 474 ENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRIGLSRER 298
+ P G + +L++EV + +S TL +RE ++I LY+GL+ E +T E+I ++ L+RER
Sbjct: 203 DEKPDDGLMNDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKFNLTRER 261
Query: 297 VRQVGLVALEKLKHAARKRKME 232
VRQ+ A+ +L+H +R + ++
Sbjct: 262 VRQIKEKAIRRLRHTSRSKTLK 283
[63][TOP]
>UniRef100_B2KBW8 RNA polymerase sigma factor n=1 Tax=Elusimicrobium minutum Pei191
RepID=B2KBW8_ELUMP
Length = 571
Score = 57.4 bits (137), Expect = 5e-07
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
NP D K+EVS++++ TL ERE +IIRL +G+D T E++ K ++RERVR
Sbjct: 488 NPTVTASDFLRKQEVSEVLN-TLSEREAKIIRLRFGIDSGYPRTLEEVGKMFNVTRERVR 546
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ A+ KL+H +R + ++
Sbjct: 547 QIEAKAIRKLRHPSRTKMLK 566
[64][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 57.4 bits (137), Expect = 5e-07
Identities = 32/89 (35%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D+ ++ H +L LKE++ +I TL +RE+ ++RL +GLD T E++ K
Sbjct: 285 FIEDSEAQSPSDHAAYEL-LKEQLEDVID-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 342
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 343 FGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[65][TOP]
>UniRef100_UPI000197B56E hypothetical protein BACCOPRO_00840 n=1 Tax=Bacteroides coprophilus
DSM 18228 RepID=UPI000197B56E
Length = 317
Score = 57.0 bits (136), Expect = 7e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
+L E+ + +S TL EREK+II++++G++ + +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 245 SLSREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 303
Query: 261 KHAARKRKMEAMI 223
+ +R + +++ +
Sbjct: 304 RQNSRSKLLKSYL 316
[66][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 57.0 bits (136), Expect = 7e-07
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D+ ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 247 FIEDSEAQSPSEHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 304
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 305 FGVTRERIRQIEAKALRKLRHPSRSKRLK 333
[67][TOP]
>UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KI23_CLOPH
Length = 372
Score = 57.0 bits (136), Expect = 7e-07
Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL +RE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 300 LKEQLMEVLG-TLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 358
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 359 RHPSRSRKLK 368
[68][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
ATCC 19414 RepID=C8NZE6_ERYRH
Length = 459
Score = 57.0 bits (136), Expect = 7e-07
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKEE+ K++ L ERE++++RL +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 385 LKEEI-KMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKL 443
Query: 261 KHAARKRKMEAMILK 217
KH R +++ + K
Sbjct: 444 KHPTRSKRLRDFVDK 458
[69][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 57.0 bits (136), Expect = 7e-07
Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE+ ++RL +G+D T E++ K G++RER+RQ+ AL KL
Sbjct: 253 LKEQLEEVLD-TLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKL 311
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 312 RHPSRSKRLK 321
[70][TOP]
>UniRef100_C4FJU2 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium
yellowstonense SS-5 RepID=C4FJU2_9AQUI
Length = 78
Score = 57.0 bits (136), Expect = 7e-07
Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKL 262
+ EE+ ++ L EREKEII++ YGL+ +E T E++ +++G+SRERVRQ+ AL+KL
Sbjct: 6 IHEELESMLDV-LDEREKEIIKMRYGLNGEESRTLEEVGEKLGISRERVRQLEQRALKKL 64
Query: 261 KHAARKRKME 232
K A K+ ++
Sbjct: 65 KAVALKKHLK 74
[71][TOP]
>UniRef100_C2FTX8 RNA polymerase sigma-70 factor n=2 Tax=Sphingobacterium
spiritivorum RepID=C2FTX8_9SPHI
Length = 286
Score = 57.0 bits (136), Expect = 7e-07
Identities = 31/76 (40%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = -1
Query: 447 DLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVAL 271
D +L EE+ + + ATL ERE+EII L++GL L+ E+I ++ L+RERVRQ+ AL
Sbjct: 211 DESLSEEIKRSL-ATLTEREREIIVLFFGLGSNHQLSLEEIGEKFNLTRERVRQIKDKAL 269
Query: 270 EKLKHAARKRKMEAMI 223
++L+H +R + +++ +
Sbjct: 270 QRLRHTSRSKILKSYL 285
[72][TOP]
>UniRef100_C1TPF1 RNA polymerase sigma factor n=1 Tax=Dethiosulfovibrio peptidovorans
DSM 11002 RepID=C1TPF1_9BACT
Length = 381
Score = 57.0 bits (136), Expect = 7e-07
Identities = 27/69 (39%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
L E++ ++ A L +RE+E++R +GL D T E++ +R G++RER+RQ+ AL KL
Sbjct: 309 LHEQIEDMLDA-LSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKALRKL 367
Query: 261 KHAARKRKM 235
+H +R +K+
Sbjct: 368 RHPSRSKKL 376
[73][TOP]
>UniRef100_C1TLL9 RNA polymerase sigma factor n=1 Tax=Dethiosulfovibrio peptidovorans
DSM 11002 RepID=C1TLL9_9BACT
Length = 381
Score = 57.0 bits (136), Expect = 7e-07
Identities = 26/65 (40%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
L++++ ++ L +REK+++RL +G D +C T ED+ +R G++RER+RQ+ AL KL
Sbjct: 309 LRDQLDDVLEG-LTDREKQVLRLRFGFDDGQCYTLEDVGRRFGVTRERIRQIEAKALRKL 367
Query: 261 KHAAR 247
+H +R
Sbjct: 368 RHPSR 372
[74][TOP]
>UniRef100_B3JJS2 Putative uncharacterized protein n=2 Tax=Bacteroides
RepID=B3JJS2_9BACE
Length = 286
Score = 57.0 bits (136), Expect = 7e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
+L E+ + +S TL EREK+II++++G++ + +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLSREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 261 KHAARKRKMEAMI 223
+ +R + +++ +
Sbjct: 273 RQNSRSKLLKSYL 285
[75][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 57.0 bits (136), Expect = 7e-07
Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +G+D T E++ K ++RER+RQ+ AL KL
Sbjct: 310 LKEQLDEVLD-TLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 368
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 369 RHPSRSRKL 377
[76][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 56.6 bits (135), Expect = 9e-07
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D E+ P + L+E + +++ TL ERE++++RL +GLD T E++ +
Sbjct: 268 FITDEEAES-PEESASFVLLREHLDGILN-TLTEREEKVLRLRFGLDDGRPRTLEEVGQE 325
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
G++RER+RQ+ AL KL+H +R +K++ I
Sbjct: 326 FGVTRERIRQIEAKALRKLRHPSRSKKLKDYI 357
[77][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
RepID=C4Z4Y6_EUBE2
Length = 434
Score = 56.6 bits (135), Expect = 9e-07
Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +G+D T E++ K ++RER+RQ+ AL KL
Sbjct: 362 LKEQLVEVLG-TLTEREQKVLRLRFGMDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 420
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 421 RHPSRSRKL 429
[78][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 56.6 bits (135), Expect = 9e-07
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 279 FIEDQEVQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 336
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 337 FGVTRERIRQIEAKALRKLRHPSRSKRLK 365
[79][TOP]
>UniRef100_B2VA41 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2VA41_SULSY
Length = 281
Score = 56.6 bits (135), Expect = 9e-07
Identities = 30/58 (51%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Frame = -1
Query: 402 LGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 232
L EREKEII++ YGLD +E T E++ +++G+SRERVRQ+ AL+KLK A K+ ++
Sbjct: 220 LDEREKEIIKMRYGLDGEEPKTLEEVGEKLGISRERVRQLEQRALKKLKAVALKKHLK 277
[80][TOP]
>UniRef100_B1ZU80 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1
RepID=B1ZU80_OPITP
Length = 353
Score = 56.6 bits (135), Expect = 9e-07
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVR 292
+P+ G + L ++ ++ A+L ERE EIIRL +GLD K+ LT E++ +R ++RER+R
Sbjct: 239 SPFEGLREKNLNSDLHAMV-ASLDEREAEIIRLRFGLDGKDELTLEEVGRRFHVTRERIR 297
Query: 291 QVGLVALEKLKHAARKRK 238
Q+ +AL K++ A K +
Sbjct: 298 QLEYLALSKMRKAMAKHE 315
[81][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 56.6 bits (135), Expect = 9e-07
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D+ ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 285 FIEDSEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 342
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 343 FGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[82][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 56.6 bits (135), Expect = 9e-07
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 319
+I D E+ P D LK+++ +++ TL ERE+ ++RL +GL D + T E++ +
Sbjct: 374 FIEDNEGES-PIESTSDQMLKDQLEEVLG-TLTEREENVLRLRFGLEDGKTRTLEEVGRV 431
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 432 FGVTRERIRQIEAKALRKLRHPSRSKQLK 460
[83][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 56.6 bits (135), Expect = 9e-07
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D+ ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 50 FIEDSEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 107
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 108 FGVTRERIRQIEAKALRKLRHPSRSKRLK 136
[84][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 56.6 bits (135), Expect = 9e-07
Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALE 268
+ LKE++ ++ TL RE++++RL +GLD T E++ + G++RER+RQ+ AL
Sbjct: 299 MLLKEQLEDVLD-TLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALR 357
Query: 267 KLKHAARKRKME 232
KL+H +R RK++
Sbjct: 358 KLRHPSRSRKLK 369
[85][TOP]
>UniRef100_C6I5X7 RpoD n=3 Tax=Bacteroides RepID=C6I5X7_9BACE
Length = 286
Score = 56.6 bits (135), Expect = 9e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
+L E+ + +S TL +REKEII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 261 KHAARKRKMEAMI 223
+ + R + +++ +
Sbjct: 273 RQSNRSKLLKSYL 285
[86][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EU48_9BACT
Length = 387
Score = 56.6 bits (135), Expect = 9e-07
Identities = 27/69 (39%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
L+E++ +++ L +REKE++RL +GL D T E++ +R G++RER+RQ+ AL KL
Sbjct: 315 LREQLEEMLE-DLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKALRKL 373
Query: 261 KHAARKRKM 235
+H +R +++
Sbjct: 374 RHPSRSKRL 382
[87][TOP]
>UniRef100_C4DZ35 RNA polymerase sigma factor n=1 Tax=Streptobacillus moniliformis
DSM 12112 RepID=C4DZ35_9FUSO
Length = 379
Score = 56.6 bits (135), Expect = 9e-07
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
NP LKE+++ ++ L ERE++++RL YGLD T E++ K ++RER+R
Sbjct: 296 NPHEATVRSVLKEKLNDVLRKELNEREEQVLRLRYGLDDGAPKTLEEVGKIFDVTRERIR 355
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + A+ KLK+ +K+ +E
Sbjct: 356 QIEVKAINKLKNIKKKKGLE 375
[88][TOP]
>UniRef100_C4CH81 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CH81_9CHLR
Length = 538
Score = 56.6 bits (135), Expect = 9e-07
Identities = 27/69 (39%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE+V ++ + LG+RE+ ++ L +GLD T E++ + G++RER+RQ+ AL KL
Sbjct: 466 LKEQVDDVLGS-LGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRKL 524
Query: 261 KHAARKRKM 235
+H +R +K+
Sbjct: 525 RHPSRSKKL 533
[89][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
RepID=C0C397_9CLOT
Length = 370
Score = 56.6 bits (135), Expect = 9e-07
Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +G+ D T E++ K ++RER+RQ+ AL KL
Sbjct: 298 LKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 356
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 357 RHPSRSRKL 365
[90][TOP]
>UniRef100_A6L3X4 RNA polymerase sigma factor rpoD n=5 Tax=Bacteroides
RepID=A6L3X4_BACV8
Length = 286
Score = 56.6 bits (135), Expect = 9e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
+L E+ + +S TL EREK+II++++G++ + +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 261 KHAARKRKMEAMI 223
+ +R + +++ +
Sbjct: 273 RQNSRSKLLKSYL 285
[91][TOP]
>UniRef100_B3CB36 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis
DSM 17393 RepID=B3CB36_9BACE
Length = 286
Score = 56.6 bits (135), Expect = 9e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
+L E+ + +S TL +REKEII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 261 KHAARKRKMEAMI 223
+ + R + +++ +
Sbjct: 273 RQSNRSKLLKSYL 285
[92][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
RepID=B0NBC7_EUBSP
Length = 371
Score = 56.6 bits (135), Expect = 9e-07
Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +G+ D T E++ K ++RER+RQ+ AL KL
Sbjct: 299 LKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 357
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 358 RHPSRSRKL 366
[93][TOP]
>UniRef100_A8SMX7 RNA polymerase sigma factor n=1 Tax=Parvimonas micra ATCC 33270
RepID=A8SMX7_9FIRM
Length = 382
Score = 56.6 bits (135), Expect = 9e-07
Identities = 29/70 (41%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++++++S TL +REK+++ L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 310 LKEQLNQVLS-TLSDREKKVLELRFGLNDGTPRTLEEVGKEFEVTRERIRQIEAKALRKL 368
Query: 261 KHAARKRKME 232
KH +R +K++
Sbjct: 369 KHPSRSQKLK 378
[94][TOP]
>UniRef100_A7VCB7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. L2-50
RepID=A7VCB7_9CLOT
Length = 377
Score = 56.6 bits (135), Expect = 9e-07
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL EREK+++ L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 305 LKEQLVEVLD-TLTEREKKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 363
Query: 261 KHAARKRKMEAMI 223
+H +R RK+ I
Sbjct: 364 RHPSRSRKLRDYI 376
[95][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7AZ88_RUMGN
Length = 371
Score = 56.6 bits (135), Expect = 9e-07
Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +G+ D T E++ K ++RER+RQ+ AL KL
Sbjct: 299 LKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 357
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 358 RHPSRSRKL 366
[96][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
RepID=A6BEL2_9FIRM
Length = 369
Score = 56.6 bits (135), Expect = 9e-07
Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +G+ D T E++ K ++RER+RQ+ AL KL
Sbjct: 297 LKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 355
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 356 RHPSRSRKL 364
[97][TOP]
>UniRef100_C3R1S4 RNA polymerase sigma factor rpoD n=9 Tax=Bacteroides
RepID=C3R1S4_9BACE
Length = 286
Score = 56.6 bits (135), Expect = 9e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
+L E+ + +S TL +REKEII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 261 KHAARKRKMEAMI 223
+ + R + +++ +
Sbjct: 273 RQSNRSKLLKSYL 285
[98][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KQA4_9FIRM
Length = 383
Score = 56.6 bits (135), Expect = 9e-07
Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +G+ D T E++ K ++RER+RQ+ AL KL
Sbjct: 311 LKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 369
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 370 RHPSRSRKL 378
[99][TOP]
>UniRef100_A1ZP06 RpoD n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZP06_9SPHI
Length = 287
Score = 56.6 bits (135), Expect = 9e-07
Identities = 28/71 (39%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRIGLSRERVRQVGLVALEK 265
+L++EV + +S TL +RE ++I LY+GL+ E +T E+I ++ L+RERVRQ+ A+ +
Sbjct: 214 SLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKFNLTRERVRQIKEKAIRR 272
Query: 264 LKHAARKRKME 232
L+H +R + ++
Sbjct: 273 LRHTSRSKALK 283
[100][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
RepID=A0NJA0_OENOE
Length = 458
Score = 56.6 bits (135), Expect = 9e-07
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 319
+I D E+ P D LK+++ +++ TL ERE+ ++RL +GL D + T E++ +
Sbjct: 367 FIEDNEGES-PIESTSDQMLKDQLEEVLG-TLTEREENVLRLRFGLEDGKTRTLEEVGRV 424
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 425 FGVTRERIRQIEAKALRKLRHPSRSKQLK 453
[101][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 56.6 bits (135), Expect = 9e-07
Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ K+++ TL RE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 306 LKEQLLKILN-TLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 364
Query: 261 KHAARKRKME 232
+H +R +K++
Sbjct: 365 RHPSRSKKLK 374
[102][TOP]
>UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG
18311 RepID=Q5M3E3_STRT2
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R ++++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLKDFI 367
[103][TOP]
>UniRef100_Q03JL2 RNA polymerase sigma factor n=2 Tax=Streptococcus thermophilus
RepID=Q03JL2_STRTD
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R ++++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLKDFI 367
[104][TOP]
>UniRef100_B7ICM7 RNA polymerase sigma factor n=1 Tax=Thermosipho africanus TCF52B
RepID=B7ICM7_THEAB
Length = 371
Score = 56.2 bits (134), Expect = 1e-06
Identities = 27/74 (36%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALE 268
+ ++EEV K++ TL +REK ++++ YGL D + T E++ + ++RER+RQ+ + AL
Sbjct: 292 MLIREEVDKVLE-TLNDREKLVLKMRYGLIDGKAKTLEEVGQYFNVTRERIRQIEVKALR 350
Query: 267 KLKHAARKRKMEAM 226
KL+H +R R ++ +
Sbjct: 351 KLRHPSRSRYLKLL 364
[105][TOP]
>UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
19977 RepID=B1MCY5_MYCA9
Length = 323
Score = 56.2 bits (134), Expect = 1e-06
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = -1
Query: 414 ISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRK 238
+ ATL ERE+++IRL YGLD + T + I K GLSRERVRQ+ + KL+H R +
Sbjct: 258 VLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLRHGDRAER 317
Query: 237 MEA 229
+ +
Sbjct: 318 LRS 320
[106][TOP]
>UniRef100_C2LRD4 RNA polymerase sigma factor n=1 Tax=Streptococcus salivarius SK126
RepID=C2LRD4_STRSL
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R ++++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLKDFI 367
[107][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
43243 RepID=B7AQM8_9BACE
Length = 448
Score = 56.2 bits (134), Expect = 1e-06
Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +GLD T E++ + ++RER+RQ+ AL KL
Sbjct: 376 LKEQLVEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKL 434
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 435 RHPSRSRKL 443
[108][TOP]
>UniRef100_A7B7L9 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7B7L9_RUMGN
Length = 297
Score = 56.2 bits (134), Expect = 1e-06
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 319
+I DT+ E P L KEEV +++S TL E+E++I+RL YGL D T E+ +
Sbjct: 213 FIEDTQ-EPTPEEAVAALVQKEEVQEMLS-TLTEKEQKILRLRYGLEDGNVHTLEETGQI 270
Query: 318 IGLSRERVRQVGLVALEKLKHAARKR 241
+G++RER+RQ+ ALEKL+ +A R
Sbjct: 271 LGVTRERIRQLESRALEKLRKSAGPR 296
[109][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 364 RHPSRSKRLK 373
[110][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[111][TOP]
>UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M18 RepID=Q8P1I9_STRP8
Length = 369
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R +++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[112][TOP]
>UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M3 RepID=Q8K811_STRP3
Length = 369
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R +++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[113][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[114][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[115][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/70 (38%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
L+E++ +++ TL ERE++++RL +GLD T E++ + G++RER+RQ+ AL KL
Sbjct: 298 LREQLDEVLK-TLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKL 356
Query: 261 KHAARKRKME 232
+H +R +K++
Sbjct: 357 RHPSRSKKLK 366
[116][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/72 (37%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALE 268
+ LKE++ +++ TL RE++++RL +GLD T E++ + G++RER+RQ+ AL
Sbjct: 293 ILLKEQLEEVLE-TLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALR 351
Query: 267 KLKHAARKRKME 232
KL+H +R +K++
Sbjct: 352 KLRHPSRSKKLK 363
[117][TOP]
>UniRef100_Q11U62 RNA polymerase sigma-70 factor n=1 Tax=Cytophaga hutchinsonii ATCC
33406 RepID=Q11U62_CYTH3
Length = 287
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/71 (39%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRIGLSRERVRQVGLVALEK 265
+L+ EV + +S TL +RE ++I LY+GL+ E +T E+I ++ L+RERVRQ+ A+ +
Sbjct: 214 SLRREVQRALS-TLTQREADVISLYFGLNGEHSMTLEEIGEKFNLTRERVRQIKEKAIRR 272
Query: 264 LKHAARKRKME 232
L+H +R + ++
Sbjct: 273 LRHTSRSKALK 283
[118][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 304 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 362
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 363 RHPSRSKRLK 372
[119][TOP]
>UniRef100_C5WFT4 RNA polymerase sigma factor n=1 Tax=Streptococcus dysgalactiae
subsp. equisimilis GGS_124 RepID=C5WFT4_STRDG
Length = 369
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R +++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[120][TOP]
>UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656
RepID=C4ZEX0_EUBR3
Length = 434
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++ L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 362 LKEQLEEVLG-TLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 420
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 421 RHPSRSRKLK 430
[121][TOP]
>UniRef100_C0MGY0 RNA polymerase sigma factor n=1 Tax=Steptococcus equi subsp.
zooepidemicus H70 RepID=C0MGY0_STRS7
Length = 369
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R +++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[122][TOP]
>UniRef100_C0M883 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. equi
4047 RepID=C0M883_STRE4
Length = 369
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R +++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[123][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ + L EREK++++L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 345 LKEQLLEVLDS-LNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 403
Query: 261 KHAARKRKME 232
+H +R +K++
Sbjct: 404 RHPSRSKKLK 413
[124][TOP]
>UniRef100_B9DRV6 RNA polymerase sigma factor n=1 Tax=Streptococcus uberis 0140J
RepID=B9DRV6_STRU0
Length = 369
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R +++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[125][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/72 (37%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALE 268
+ LKE++ +++ TL RE++++RL +GLD T E++ + G++RER+RQ+ AL
Sbjct: 298 ILLKEQLEEVLE-TLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALR 356
Query: 267 KLKHAARKRKME 232
KL+H +R +K++
Sbjct: 357 KLRHPSRSKKLK 368
[126][TOP]
>UniRef100_B8E0E4 RNA polymerase sigma factor n=1 Tax=Dictyoglomus turgidum DSM 6724
RepID=B8E0E4_DICTD
Length = 413
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/71 (38%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 265
+LK+++ +L++ L ERE+EI++L +GL D + T E++ K ++RER+RQ+ AL +
Sbjct: 339 SLKKDIEELLNE-LSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRR 397
Query: 264 LKHAARKRKME 232
L+H +R +K++
Sbjct: 398 LRHPSRSKKIK 408
[127][TOP]
>UniRef100_B5YES0 RNA polymerase sigma factor n=1 Tax=Dictyoglomus thermophilum
H-6-12 RepID=B5YES0_DICT6
Length = 413
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/71 (38%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 265
+LK+++ +L++ L ERE+EI++L +GL D + T E++ K ++RER+RQ+ AL +
Sbjct: 339 SLKKDIEELLNE-LSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRR 397
Query: 264 LKHAARKRKME 232
L+H +R +K++
Sbjct: 398 LRHPSRSKKIK 408
[128][TOP]
>UniRef100_B4U2H7 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp.
zooepidemicus MGCS10565 RepID=B4U2H7_STREM
Length = 369
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R +++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[129][TOP]
>UniRef100_A6LLT9 RNA polymerase sigma factor n=1 Tax=Thermosipho melanesiensis BI429
RepID=A6LLT9_THEM4
Length = 370
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/74 (36%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALE 268
+ ++EEV K++ TL +REK ++++ YGL D + T E++ + ++RER+RQ+ + AL
Sbjct: 291 MLIREEVEKVLE-TLNDREKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALR 349
Query: 267 KLKHAARKRKMEAM 226
KL+H +R R ++ +
Sbjct: 350 KLRHPSRSRYLKLL 363
[130][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 55.8 bits (133), Expect = 1e-06
Identities = 26/70 (37%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
L+E++ +++ TL ERE+ ++RL +GLD T E++ ++ G++RER+RQ+ L KL
Sbjct: 291 LREQLDEVLK-TLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 349
Query: 261 KHAARKRKME 232
+H +R +K++
Sbjct: 350 RHPSRSKKLK 359
[131][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ + L EREK++++L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 339 LKEQLLEVLDS-LNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 397
Query: 261 KHAARKRKME 232
+H +R +K++
Sbjct: 398 RHPSRSKKLK 407
[132][TOP]
>UniRef100_A2RFA3 RNA polymerase sigma factor n=9 Tax=Streptococcus pyogenes
RepID=A2RFA3_STRPG
Length = 369
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R +++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[133][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[134][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[135][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[136][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 252 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 309
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 310 FGVTRERIRQIEAKALRKLRHPSRSKRLK 338
[137][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[138][TOP]
>UniRef100_C6JI10 RNA polymerase sigma factor n=1 Tax=Fusobacterium varium ATCC 27725
RepID=C6JI10_FUSVA
Length = 414
Score = 55.8 bits (133), Expect = 1e-06
Identities = 29/80 (36%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
NP+ + L+E+++ +++ TL RE+ ++R YGLD T E++ K ++RER+R
Sbjct: 332 NPYELTNRSLLREQLNGVLN-TLSSREERVLRYRYGLDDGSPKTLEEVGKIFKVTRERIR 390
Query: 291 QVGLVALEKLKHAARKRKME 232
Q+ + AL KL+H +R++K+E
Sbjct: 391 QIEVKALRKLRHPSRRKKLE 410
[139][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 302 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 360
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 361 RHPSRSKRLK 370
[140][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[141][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[142][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 277 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 334
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 335 FGVTRERIRQIEAKALRKLRHPSRSKRLK 363
[143][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[144][TOP]
>UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM
16841 RepID=C0FXF0_9FIRM
Length = 426
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++ L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 354 LKEQLEEVLG-TLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 412
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 413 RHPSRSRKLK 422
[145][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[146][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 355 RHPSRSKRLK 364
[147][TOP]
>UniRef100_B1SG84 RNA polymerase sigma factor n=1 Tax=Streptococcus infantarius
subsp. infantarius ATCC BAA-102 RepID=B1SG84_9STRE
Length = 369
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R +++ I
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[148][TOP]
>UniRef100_C6Y2J2 RNA polymerase sigma factor, sigma-70 family n=2 Tax=Pedobacter
RepID=C6Y2J2_PEDHD
Length = 286
Score = 55.8 bits (133), Expect = 1e-06
Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEK 265
+L EE+ + +S TL ERE+EII L++GL L+ E+I ++ L+RERVRQ+ AL++
Sbjct: 213 SLSEEIKRSLS-TLTEREREIIVLFFGLSTNHPLSLEEIGEKFNLTRERVRQIKDKALQR 271
Query: 264 LKHAARKRKMEAMI 223
L+H +R + +++ +
Sbjct: 272 LRHTSRSKILKSYL 285
[149][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 364 RHPSRSKRLK 373
[150][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[151][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[152][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[153][TOP]
>UniRef100_UPI000185CB93 RNA polymerase sigma factor RpoD n=1 Tax=Capnocytophaga sputigena
ATCC 33612 RepID=UPI000185CB93
Length = 287
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 265
+L+ E+ + + TL RE ++IRLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVIRLYFGLGDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 264 LKHAARKRKMEAMI 223
LKH +R + ++ +
Sbjct: 273 LKHTSRSKILKTYL 286
[154][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL ERE+ ++RL +GL D T E++ K G++RER+RQ+ AL KL
Sbjct: 295 LKEQLEHVLD-TLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKL 353
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 354 RHPSRSKRLK 363
[155][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NKZ2_GLOVI
Length = 350
Score = 55.5 bits (132), Expect = 2e-06
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = -1
Query: 471 NNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERV 295
N P HG + +++ L+ TL RE++++RL YGL D T +++ ++ GL+RER+
Sbjct: 262 NEPEHGVVRDLMNQDLESLLQ-TLTPRERDVLRLRYGLIDGRSRTLDEVGQQFGLTRERI 320
Query: 294 RQVGLVALEKLKHAARKRKM 235
RQ+ AL KL+H R +++
Sbjct: 321 RQIEARALRKLRHPQRLQRV 340
[156][TOP]
>UniRef100_B9L102 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L102_THERP
Length = 509
Score = 55.5 bits (132), Expect = 2e-06
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
L+E+V L+ ATL ERE+ ++ + +GL D + T E++ + G++RERVRQ+ AL KL
Sbjct: 437 LREQVQSLL-ATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKL 495
Query: 261 KHAARKRKM 235
+H R R +
Sbjct: 496 RHPQRARAL 504
[157][TOP]
>UniRef100_Q3D699 RNA polymerase sigma factor n=7 Tax=Streptococcus agalactiae
RepID=Q3D699_STRAG
Length = 369
Score = 55.5 bits (132), Expect = 2e-06
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[158][TOP]
>UniRef100_Q3CZ52 RNA polymerase sigma factor n=1 Tax=Streptococcus agalactiae H36B
RepID=Q3CZ52_STRAG
Length = 369
Score = 55.5 bits (132), Expect = 2e-06
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 278 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 335
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[159][TOP]
>UniRef100_C6RFN1 RNA polymerase sigma factor n=1 Tax=Campylobacter showae RM3277
RepID=C6RFN1_9PROT
Length = 627
Score = 55.5 bits (132), Expect = 2e-06
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLVALEK 265
LKE++ +++ L EREK +IR+ +GL D+ T E+I K + ++RERVRQ+ A++K
Sbjct: 553 LKEQIDEVLDQ-LNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKK 611
Query: 264 LKHAARKRKMEAMI 223
LKH RK++ I
Sbjct: 612 LKHPKVGRKLKNYI 625
[160][TOP]
>UniRef100_C4RDH0 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149
RepID=C4RDH0_9ACTO
Length = 334
Score = 55.5 bits (132), Expect = 2e-06
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -1
Query: 447 DLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVAL 271
D L+ EV +++ ATL +RE+ +IRL +GLD T +++ + GLSRER+RQ+ V L
Sbjct: 259 DGELRNEV-RIVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTL 317
Query: 270 EKLKHAARKRKMEA 229
KL+ R +++EA
Sbjct: 318 LKLRAPERAQRLEA 331
[161][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
25644 RepID=C2E8V2_9LACO
Length = 373
Score = 55.5 bits (132), Expect = 2e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQIESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKQLK 369
[162][TOP]
>UniRef100_C0UTU9 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC
BAA-798 RepID=C0UTU9_9BACT
Length = 363
Score = 55.5 bits (132), Expect = 2e-06
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 319
++ D R NP D LK E+ +++ L REK +++L YGL D + E + +
Sbjct: 271 FVPDVRA--NPEEEATDEVLKTEMDRVLDEVLTPREKRVLQLRYGLGDGHTYSLEKVGRE 328
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKM 235
+G++RERVRQ+ ALEKL+ RK+
Sbjct: 329 LGVTRERVRQLEKQALEKLRRGPAIRKL 356
[163][TOP]
>UniRef100_B6FR93 RNA polymerase sigma factor n=1 Tax=Clostridium nexile DSM 1787
RepID=B6FR93_9CLOT
Length = 370
Score = 55.5 bits (132), Expect = 2e-06
Identities = 27/69 (39%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL +RE++++RL +G+ D T E++ K ++RER+RQ+ AL KL
Sbjct: 298 LKEQLGEVLD-TLTDREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 356
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 357 RHPSRSRKL 365
[164][TOP]
>UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CM66_9FIRM
Length = 372
Score = 55.5 bits (132), Expect = 2e-06
Identities = 27/69 (39%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++RL +G+ D T E++ + ++RER+RQ+ AL KL
Sbjct: 300 LKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQIEAKALRKL 358
Query: 261 KHAARKRKM 235
+H +R RK+
Sbjct: 359 RHPSRSRKL 367
[165][TOP]
>UniRef100_A8RBC2 RNA polymerase sigma factor n=1 Tax=Eubacterium dolichum DSM 3991
RepID=A8RBC2_9FIRM
Length = 398
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LK+E++ ++ L ERE++++RL +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 324 LKDEINTVLQG-LTEREEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIRQIEAKALRKL 382
Query: 261 KHAARKRKMEAMILK 217
KH R ++++ + K
Sbjct: 383 KHPTRSKRLKDFVDK 397
[166][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 55.5 bits (132), Expect = 2e-06
Identities = 27/72 (37%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALE 268
+ LKE++ +++ TL RE++++RL +GLD T E++ + G++RER+RQ+ AL
Sbjct: 294 MLLKEQLEEVLE-TLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALR 352
Query: 267 KLKHAARKRKME 232
KL+H +R +K++
Sbjct: 353 KLRHPSRSKKLK 364
[167][TOP]
>UniRef100_UPI0001BB55B2 RNA polymerase sigma factor RpoD n=1 Tax=Streptococcus sp.
2_1_36FAA RepID=UPI0001BB55B2
Length = 370
Score = 55.1 bits (131), Expect = 3e-06
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 279 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 336
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R + + I
Sbjct: 337 FNVTRERIRQIEAKALRKLRHPSRSKPLRDFI 368
[168][TOP]
>UniRef100_UPI00016C45A8 transcription initiation factor sigma 70 n=1 Tax=Gemmata
obscuriglobus UQM 2246 RepID=UPI00016C45A8
Length = 556
Score = 55.1 bits (131), Expect = 3e-06
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 319
+I D +E+ P + + LK+++ ++ TL RE+EII+L YGL D T E++ +
Sbjct: 459 FIEDNSVES-PVNAATNEMLKDKIEGVLK-TLTYREREIIKLRYGLGDGYTYTLEEVGRI 516
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI--LKN 214
++RERVRQ+ A+ KL+H R R++E + LKN
Sbjct: 517 FKVTRERVRQIEAKAVRKLQHPVRSRQLEGFLDGLKN 553
[169][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 55.1 bits (131), Expect = 3e-06
Identities = 26/72 (36%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALE 268
+ L+E++ +++++ L REK ++RL +GLD T E++ + G++RER+RQ+ AL
Sbjct: 287 MLLREQLEEVLNS-LTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALR 345
Query: 267 KLKHAARKRKME 232
KL+H +R +K++
Sbjct: 346 KLRHPSRSKKLK 357
[170][TOP]
>UniRef100_Q2JMC5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JMC5_SYNJB
Length = 319
Score = 55.1 bits (131), Expect = 3e-06
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 474 ENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRER 298
+N+P LA +EEV L+ L ERE+++I YGLD LT +I + IGLSRER
Sbjct: 228 DNDPVEHLTQLARREEVRALVGQ-LSERERQVIVARYGLDGSRGLTLREIGEHIGLSRER 286
Query: 297 VRQVGLVALEKLK 259
VRQ+ AL KL+
Sbjct: 287 VRQIERRALRKLR 299
[171][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 55.1 bits (131), Expect = 3e-06
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D + H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 284 FIEDQEATSPSEHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 341
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 342 FGVTRERIRQIEAKALRKLRHPSRSKRLK 370
[172][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 55.1 bits (131), Expect = 3e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 276 FIEDQDAQSPADHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 333
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 334 FGVTRERIRQIEAKALRKLRHPSRSKRLK 362
[173][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/72 (37%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALE 268
+ LKE++ +++ TL RE +++RL +GLD T E++ + G++RER+RQ+ AL
Sbjct: 297 ILLKEQLEEVLE-TLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALR 355
Query: 267 KLKHAARKRKME 232
KL+H +R +K++
Sbjct: 356 KLRHPSRSKKLK 367
[174][TOP]
>UniRef100_A8AXP5 RNA polymerase sigma factor n=1 Tax=Streptococcus gordonii str.
Challis RepID=A8AXP5_STRGC
Length = 370
Score = 55.1 bits (131), Expect = 3e-06
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 279 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 336
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R + + I
Sbjct: 337 FNVTRERIRQIEAKALRKLRHPSRSKPLRDFI 368
[175][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
RepID=A4J7B9_DESRM
Length = 367
Score = 55.1 bits (131), Expect = 3e-06
Identities = 25/70 (35%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
L+E++ +++ TL +RE++++RL +GLD T E++ ++ G++RER+RQ+ L KL
Sbjct: 295 LREQLDEVLK-TLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 353
Query: 261 KHAARKRKME 232
+H +R +K++
Sbjct: 354 RHPSRSKKLK 363
[176][TOP]
>UniRef100_A3CM49 RNA polymerase sigma factor n=1 Tax=Streptococcus sanguinis SK36
RepID=A3CM49_STRSV
Length = 370
Score = 55.1 bits (131), Expect = 3e-06
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 279 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 336
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R + + I
Sbjct: 337 FNVTRERIRQIEAKALRKLRHPSRSKPLRDFI 368
[177][TOP]
>UniRef100_Q1PW65 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1PW65_9BACT
Length = 551
Score = 55.1 bits (131), Expect = 3e-06
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 319
+I D + E+ P LK+++ ++ TL RE+EII+L YG+ D T E++ K
Sbjct: 455 FIEDEKAES-PVAAATQEMLKDKIESVLE-TLTYREREIIKLRYGIGDGYTYTLEEVGKI 512
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RERVRQ+ A+ KL+H R RK+E +
Sbjct: 513 FKVTRERVRQIEAKAVRKLQHPIRSRKLEGFL 544
[178][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
RepID=P77870_HELMO
Length = 333
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/72 (37%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALE 268
+ LKE++ +++ TL RE +++RL +GLD T E++ + G++RER+RQ+ AL
Sbjct: 259 ILLKEQLEEVLE-TLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALR 317
Query: 267 KLKHAARKRKME 232
KL+H +R +K++
Sbjct: 318 KLRHPSRSKKLK 329
[179][TOP]
>UniRef100_C7M639 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M639_CAPOD
Length = 287
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 265
+L+ E+ + + TL RE +++RLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVVRLYFGLSDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 264 LKHAARKRKMEAMI 223
LKH +R + ++ +
Sbjct: 273 LKHTSRSKILKTYL 286
[180][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 55.1 bits (131), Expect = 3e-06
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D + H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 287 FIEDQEATSPSEHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 344
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 345 FGVTRERIRQIEAKALRKLRHPSRSKRLK 373
[181][TOP]
>UniRef100_C5NX65 RNA polymerase sigma factor n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NX65_9BACL
Length = 361
Score = 55.1 bits (131), Expect = 3e-06
Identities = 29/92 (31%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 319
+I D ++ H ++L LKE++ +++ TL +RE+ +++L +GL D + T E++
Sbjct: 271 FIEDKEAQSPVEHAANEL-LKEQLEEILE-TLTDREENVLKLRFGLKDGKTHTLEEVGSA 328
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
G++RER+RQ+ A+ KLKH ++ K++ +
Sbjct: 329 FGVTRERIRQIEAKAIRKLKHPSKLNKLKGFM 360
[182][TOP]
>UniRef100_C0BG96 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Flavobacteria
bacterium MS024-2A RepID=C0BG96_9BACT
Length = 287
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 265
+L+ E+ + + TL RE +++RLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVVRLYFGLGDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 264 LKHAARKRKMEAMI 223
LKH +R + ++ +
Sbjct: 273 LKHTSRSKILKTYL 286
[183][TOP]
>UniRef100_A4VWA5 RNA polymerase sigma factor n=6 Tax=Streptococcus suis
RepID=A4VWA5_STRSY
Length = 372
Score = 55.1 bits (131), Expect = 3e-06
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 281 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 338
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R + + I
Sbjct: 339 FNVTRERIRQIEAKALRKLRHPSRSKPLRDFI 370
[184][TOP]
>UniRef100_B6FWI1 RNA polymerase sigma factor n=1 Tax=Clostridium hiranonis DSM 13275
RepID=B6FWI1_9CLOT
Length = 388
Score = 55.1 bits (131), Expect = 3e-06
Identities = 26/69 (37%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ + L ERE+++++L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 316 LKEQIDEVLGS-LNEREQKVLKLRFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 374
Query: 261 KHAARKRKM 235
+H +R +K+
Sbjct: 375 RHPSRSKKL 383
[185][TOP]
>UniRef100_B4VH85 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4VH85_9CYAN
Length = 374
Score = 55.1 bits (131), Expect = 3e-06
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = -1
Query: 477 LENNPWH----GYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIG 313
LE+N H + +++E+S ++S L EREK++I L YGL E T E++
Sbjct: 284 LEDNDLHLPEQQMSESMMRQEISDVLSDVLTEREKDVISLRYGLATPESYTLEEVGSMFN 343
Query: 312 LSRERVRQVGLVALEKLKHAARKRKMEAMI 223
LSRERVRQ+ A+ KL+ R+++ +
Sbjct: 344 LSRERVRQIQSKAMRKLRRPQVARRLQGWL 373
[186][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 55.1 bits (131), Expect = 3e-06
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D + H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 285 FIEDQEATSPSEHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 342
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 343 FGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[187][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
RepID=B0MPW5_9FIRM
Length = 358
Score = 55.1 bits (131), Expect = 3e-06
Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++S+++ TL RE++++RL +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 286 LKEQLSEILG-TLTPREEKVLRLRFGLEDGRPRTLEEVGKEFDVTRERIRQIEAKALRKL 344
Query: 261 KHAARKRKME 232
+H +R +K++
Sbjct: 345 RHPSRSKKLK 354
[188][TOP]
>UniRef100_B0AB34 RNA polymerase sigma factor n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0AB34_9CLOT
Length = 294
Score = 55.1 bits (131), Expect = 3e-06
Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = -1
Query: 489 ADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIG 313
+D + H + LKE++++L++ L E+E++++R+ +GLD + T E+I K G
Sbjct: 206 SDANFSDVVMHEVEQHNLKEKINELLTG-LSEQEQKVLRMRFGLDDDDPKTLEEIGKVFG 264
Query: 312 LSRERVRQVGLVALEKLKHAARKRKME 232
++RER+RQ+ A+ KL+H +R +++
Sbjct: 265 VTRERIRQIEAKAIRKLRHPSRLNQLK 291
[189][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
RepID=A8U8N7_9LACT
Length = 373
Score = 55.1 bits (131), Expect = 3e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T ED+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKQLK 369
[190][TOP]
>UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753
RepID=A7VZA6_9CLOT
Length = 365
Score = 55.1 bits (131), Expect = 3e-06
Identities = 27/72 (37%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = -1
Query: 444 LALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALE 268
+ LKE++++++ TL RE++++RL +GL D T E++ K ++RER+RQ+ AL
Sbjct: 291 ILLKEQLAEVLD-TLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALR 349
Query: 267 KLKHAARKRKME 232
KL+H +R +K++
Sbjct: 350 KLRHPSRSKKLK 361
[191][TOP]
>UniRef100_O33662 RNA polymerase sigma factor rpoD n=2 Tax=Streptococcus mutans
RepID=RPOD_STRMU
Length = 371
Score = 55.1 bits (131), Expect = 3e-06
Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D +EN P + L+E++ +++ TL +RE+ ++RL +GLD + T ED+ K
Sbjct: 280 FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGKV 337
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 223
++RER+RQ+ AL KL+H +R +++ +
Sbjct: 338 FDVTRERIRQIEAKALRKLRHPSRSKQLRDFV 369
[192][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[193][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE+ ++RL +GL D T E++ + G++RER+RQ+ AL KL
Sbjct: 244 LKEQLEEVLD-TLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKL 302
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 303 RHPSRSKRLK 312
[194][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 308 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 366
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 367 RHPSRSKRLK 376
[195][TOP]
>UniRef100_Q6MR57 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus
RepID=Q6MR57_BDEBA
Length = 609
Score = 54.7 bits (130), Expect = 3e-06
Identities = 28/83 (33%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = -1
Query: 468 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 292
NP +L L E+ +++S TL RE++++R+ +G+ +E T E++ + ++RER+R
Sbjct: 526 NPAEAIVNLNLAEQTRRVLS-TLTPREEKVLRMRFGIGEESDHTLEEVGQDFNVTRERIR 584
Query: 291 QVGLVALEKLKHAARKRKMEAMI 223
Q+ AL KL+H +R K++A +
Sbjct: 585 QIEAKALRKLRHPSRSNKLKAFV 607
[196][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[197][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[198][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 297 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 356 RHPSRSKQLK 365
[199][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 359 RHPSRSKQLK 368
[200][TOP]
>UniRef100_Q18C16 RNA polymerase sigma factor n=2 Tax=Clostridium difficile
RepID=Q18C16_CLOD6
Length = 296
Score = 54.7 bits (130), Expect = 3e-06
Identities = 26/77 (33%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = -1
Query: 459 HGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVG 283
H + LKE++ +L++ LGE+E++++R+ +G+D + T E I K G++RER+RQ+
Sbjct: 218 HEVEQHNLKEKIEELLTG-LGEQEQQVLRMRFGIDDDDPKTLEQIGKVFGVTRERIRQIE 276
Query: 282 LVALEKLKHAARKRKME 232
A+ KL+H ++ ++++
Sbjct: 277 AKAIRKLRHPSKLKQLK 293
[201][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 292 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 350
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 351 RHPSRSKRLK 360
[202][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[203][TOP]
>UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV68_SULAA
Length = 586
Score = 54.7 bits (130), Expect = 3e-06
Identities = 28/74 (37%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = -1
Query: 441 ALKEEVSKLISATLGEREKEIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEK 265
AL+ ++ +++S TL ERE++++R +GL+ + T E + KR G++RER+RQ+ AL K
Sbjct: 511 ALRMQLDEVLS-TLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRK 569
Query: 264 LKHAARKRKMEAMI 223
L+H R + ++ I
Sbjct: 570 LRHPHRAKYLKPFI 583
[204][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 304 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 362
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 363 RHPSRSKRLK 372
[205][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[206][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 359 RHPSRSKRLK 368
[207][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 289 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 347
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 348 RHPSRSKRLK 357
[208][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL RE++++RL +GLD T E++ K+ ++RER+RQ+ AL KL
Sbjct: 300 LKEQLVEVLD-TLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358
Query: 261 KHAARKRKME 232
+H +R +K++
Sbjct: 359 RHPSRSKKLK 368
[209][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[210][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[211][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[212][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL RE++++RL +GLD T E++ K+ ++RER+RQ+ AL KL
Sbjct: 300 LKEQLIEVLD-TLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358
Query: 261 KHAARKRKME 232
+H +R +K++
Sbjct: 359 RHPSRSKKLK 368
[213][TOP]
>UniRef100_A0RNC8 RNA polymerase sigma factor n=1 Tax=Campylobacter fetus subsp.
fetus 82-40 RepID=A0RNC8_CAMFF
Length = 623
Score = 54.7 bits (130), Expect = 3e-06
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLVALEK 265
LKE++ +++ L +REK +IR+ +GL D+ T E+I K + ++RERVRQ+ A++K
Sbjct: 548 LKEQIDEVLDQ-LNDREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKK 606
Query: 264 LKHAARKRKMEAMILKN 214
LKH RK++ I N
Sbjct: 607 LKHPKVGRKLKNYIEGN 623
[214][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 360
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 361 RHPSRSKRLK 370
[215][TOP]
>UniRef100_C9XJA1 RNA polymerase sigma factor rpoD n=2 Tax=Clostridium difficile
RepID=C9XJA1_CLODI
Length = 301
Score = 54.7 bits (130), Expect = 3e-06
Identities = 26/77 (33%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = -1
Query: 459 HGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVG 283
H + LKE++ +L++ LGE+E++++R+ +G+D + T E I K G++RER+RQ+
Sbjct: 223 HEVEQHNLKEKIEELLTG-LGEQEQQVLRMRFGIDDDDPKTLEQIGKVFGVTRERIRQIE 281
Query: 282 LVALEKLKHAARKRKME 232
A+ KL+H ++ ++++
Sbjct: 282 AKAIRKLRHPSKLKQLK 298
[216][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 54.7 bits (130), Expect = 3e-06
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D + H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 279 FIEDQEATSPAEHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 336
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 337 FGVTRERIRQIEAKALRKLRHPSRSKQLK 365
[217][TOP]
>UniRef100_C8NEW7 RNA polymerase sigma-43 factor n=1 Tax=Granulicatella adiacens ATCC
49175 RepID=C8NEW7_9LACT
Length = 374
Score = 54.7 bits (130), Expect = 3e-06
Identities = 32/94 (34%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Frame = -1
Query: 498 SYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK--ECLTWE 334
S++ D ++N D A LKE++ +++ L +RE+ ++RL +GLDK E T E
Sbjct: 278 SHLGDFIEDDNATSPADHTAYALLKEQLDEVLEQ-LTDREENVLRLRFGLDKNGEIRTLE 336
Query: 333 DISKRIGLSRERVRQVGLVALEKLKHAARKRKME 232
+ + G++RER+RQ+ AL KL+H +R ++++
Sbjct: 337 QVGQVFGVTRERIRQIEAKALRKLRHPSRSKQLK 370
[218][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 344 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 402
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 403 RHPSRSKQLK 412
[219][TOP]
>UniRef100_C7GGM6 RNA polymerase sigma factor RpoD n=1 Tax=Roseburia intestinalis
L1-82 RepID=C7GGM6_9FIRM
Length = 397
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ +++ TL ERE++++ L +GL D T E++ + ++RER+RQ+ AL KL
Sbjct: 325 LKEQLEEVLG-TLTEREQKVLTLRFGLEDGRARTLEEVGREFNVTRERIRQIEAKALRKL 383
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 384 RHPSRSRKLK 393
[220][TOP]
>UniRef100_C5ZWP6 RNA polymerase sigma factor n=1 Tax=Helicobacter canadensis MIT
98-5491 RepID=C5ZWP6_9HELI
Length = 616
Score = 54.7 bits (130), Expect = 3e-06
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLVALEK 265
LKE++ ++ L EREK +IR+ +GL D+ T E+I K + ++RERVRQ+ A++K
Sbjct: 542 LKEQIDDVLDQ-LNEREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKK 600
Query: 264 LKHAARKRKMEAMI 223
LKH RK++ I
Sbjct: 601 LKHPKVGRKLKNYI 614
[221][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 280 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 338
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 339 RHPSRSKQLK 348
[222][TOP]
>UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM
14600 RepID=C4G971_9FIRM
Length = 614
Score = 54.7 bits (130), Expect = 3e-06
Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++++++ TL ERE++++ L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 542 LKEQLNEVLD-TLTERERKVLILRFGLEDGRGRTLEEVGKEFNVTRERIRQIEAKALRKL 600
Query: 261 KHAARKRKME 232
+H +R RK++
Sbjct: 601 RHPSRSRKLK 610
[223][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[224][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[225][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[226][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[227][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[228][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[229][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[230][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[231][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[232][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 344 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 402
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 403 RHPSRSKQLK 412
[233][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 54.7 bits (130), Expect = 3e-06
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -1
Query: 495 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 319
+I D + H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 279 FIEDQEATSPAEHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 336
Query: 318 IGLSRERVRQVGLVALEKLKHAARKRKME 232
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 337 FGVTRERIRQIEAKALRKLRHPSRSKQLK 365
[234][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 350 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 408
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 409 RHPSRSKQLK 418
[235][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 359 RHPSRSKQLK 368
[236][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 364 RHPSRSKRLK 373
[237][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
RepID=C0XLP2_LACHI
Length = 389
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 317 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 375
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 376 RHPSRSKQLK 385
[238][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
11577 RepID=C0WTG9_LACBU
Length = 389
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 317 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 375
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 376 RHPSRSKQLK 385
[239][TOP]
>UniRef100_C0EE25 RNA polymerase sigma factor n=1 Tax=Clostridium methylpentosum DSM
5476 RepID=C0EE25_9CLOT
Length = 372
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 262
L+E++ ++ TL ERE++++RL +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 300 LREQLGDVLG-TLTEREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKL 358
Query: 261 KHAARKRKME 232
+H +R +K++
Sbjct: 359 RHPSRSKKLK 368
[240][TOP]
>UniRef100_C0CZA7 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0CZA7_9CLOT
Length = 405
Score = 54.7 bits (130), Expect = 3e-06
Identities = 25/73 (34%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -1
Query: 450 DDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 274
+++ L+EE+ ++ L ERE+++I+L +GL+ LT E++ ++ ++RER+RQ+ A
Sbjct: 329 ENVLLREEIDSMLQG-LNERERQVIKLRFGLENGRPLTLEEVGRQFNVTRERIRQIETAA 387
Query: 273 LEKLKHAARKRKM 235
L KL++ R +K+
Sbjct: 388 LRKLRNPVRSKKV 400
[241][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[242][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 344 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 402
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 403 RHPSRSKQLK 412
[243][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[244][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[245][TOP]
>UniRef100_A6L8X9 RNA polymerase sigma factor rpoD n=4 Tax=Parabacteroides
RepID=A6L8X9_PARD8
Length = 286
Score = 54.7 bits (130), Expect = 3e-06
Identities = 31/90 (34%), Positives = 55/90 (61%)
Frame = -1
Query: 492 IADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIG 313
IAD L N +L +E+ + + ATL ERE EII++++G+ + +T E+I + G
Sbjct: 205 IADRSLMNE--------SLAKEIDRAL-ATLTERECEIIKMFFGIGCQEMTLEEIGDKFG 255
Query: 312 LSRERVRQVGLVALEKLKHAARKRKMEAMI 223
L+RERVRQ+ A+ +L+ R + +++ +
Sbjct: 256 LTRERVRQIKEKAIRRLRQGTRSKLLKSYL 285
[246][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 299 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 357
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 358 RHPSRSKRLK 367
[247][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 262
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 261 KHAARKRKME 232
+H +R ++++
Sbjct: 359 RHPSRSKRLK 368
[248][TOP]
>UniRef100_UPI0001984805 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984805
Length = 426
Score = 54.3 bits (129), Expect = 4e-06
Identities = 29/64 (45%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKL 262
+K+EV + ++ TL ERE I+RLY+G++ E L++E+I + + LSRERVRQ+ +AL KL
Sbjct: 354 MKQEVERALN-TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKL 412
Query: 261 KHAA 250
+ +
Sbjct: 413 RQTS 416
[249][TOP]
>UniRef100_Q896X6 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q896X6_CLOTE
Length = 282
Score = 54.3 bits (129), Expect = 4e-06
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Frame = -1
Query: 438 LKEEVSKLISATLGEREKEIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLVALEK 265
L + +S ++S TL RE+ I+RL YGL D E T E+I + L+RER+RQ+ A+ K
Sbjct: 209 LGDTLSNVLS-TLSPREERIVRLRYGLVGDGESRTLEEIGREFNLTRERIRQIEARAIRK 267
Query: 264 LKHAARKRKME 232
L+H R +K++
Sbjct: 268 LRHPTRIKKLQ 278
[250][TOP]
>UniRef100_Q7NB90 RNA polymerase sigma factor n=1 Tax=Mycoplasma gallisepticum
RepID=Q7NB90_MYCGA
Length = 644
Score = 54.3 bits (129), Expect = 4e-06
Identities = 25/78 (32%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Frame = -1
Query: 450 DDLALKEEVSKLISATLGEREKEIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQVGLV 277
+ L + E +++L TL ++E++IIR+ YGL + +T E++ ++ ++RER+RQ+
Sbjct: 561 EKLIVTEHINELFINTLTKKEEQIIRMRYGLHPWHQQMTLEEVGQKFNVTRERIRQIESK 620
Query: 276 ALEKLKHAARKRKMEAMI 223
AL KLKH ++ ++ + +
Sbjct: 621 ALRKLKHPSKNARLRSFL 638