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[1][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
           thaliana RepID=RPOA_ARATH
          Length = 329

 Score =  392 bits (1007), Expect = e-107
 Identities = 191/191 (100%), Positives = 191/191 (100%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE
Sbjct: 69  NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 248

Query: 35  PFFPFHNRLVN 3
           PFFPFHNRLVN
Sbjct: 249 PFFPFHNRLVN 259

[2][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
           bursa-pastoris RepID=RPOA_CAPBU
          Length = 327

 Score =  387 bits (994), Expect = e-106
 Identities = 187/191 (97%), Positives = 190/191 (99%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248

Query: 35  PFFPFHNRLVN 3
           PFFPFHNRLVN
Sbjct: 249 PFFPFHNRLVN 259

[3][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
           pumila RepID=RPOA_OLIPU
          Length = 327

 Score =  384 bits (987), Expect = e-105
 Identities = 186/191 (97%), Positives = 189/191 (98%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEET YLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYLENNQHQVTL 248

Query: 35  PFFPFHNRLVN 3
           PFFPFHNRLVN
Sbjct: 249 PFFPFHNRLVN 259

[4][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
           maritima RepID=RPOA_LOBMA
          Length = 327

 Score =  383 bits (984), Expect = e-105
 Identities = 185/191 (96%), Positives = 189/191 (98%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITA+DIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248

Query: 35  PFFPFHNRLVN 3
           P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259

[5][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
           officinale RepID=RPOA_NASOF
          Length = 327

 Score =  382 bits (981), Expect = e-104
 Identities = 185/191 (96%), Positives = 188/191 (98%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248

Query: 35  PFFPFHNRLVN 3
           P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259

[6][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
           RepID=RPOA_BARVE
          Length = 327

 Score =  382 bits (981), Expect = e-104
 Identities = 185/191 (96%), Positives = 188/191 (98%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248

Query: 35  PFFPFHNRLVN 3
           P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259

[7][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
           virginicum RepID=RPOA_LEPVR
          Length = 327

 Score =  378 bits (971), Expect = e-103
 Identities = 183/191 (95%), Positives = 187/191 (97%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITA+DIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IIDNTQHIATL EPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248

Query: 35  PFFPFHNRLVN 3
           P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259

[8][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
           wallichii RepID=RPOA_CRUWA
          Length = 327

 Score =  377 bits (967), Expect = e-103
 Identities = 181/191 (94%), Positives = 186/191 (97%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+DNTQHIATLTEPIDLCI LKIERNRGYSLK+SNN EDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248

Query: 35  PFFPFHNRLVN 3
           PFFPFHNR  N
Sbjct: 249 PFFPFHNRFFN 259

[9][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
           RepID=RPOA_DRANE
          Length = 327

 Score =  373 bits (957), Expect = e-102
 Identities = 180/191 (94%), Positives = 186/191 (97%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+DNTQHIAT+TE IDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF+LENNQHQVTL
Sbjct: 189 YGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHLENNQHQVTL 248

Query: 35  PFFPFHNRLVN 3
           P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259

[10][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
           RepID=RPOA_SINAL
          Length = 327

 Score =  370 bits (951), Expect = e-101
 Identities = 177/191 (92%), Positives = 186/191 (97%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNLNEIVL+SNLYGTRN  ICVQGPGYITARDIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNPFICVQGPGYITARDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+DNTQHIATLTEPI+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLINLFIPFLHVEEETFYLENNQHQVTL
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYLENNQHQVTL 248

Query: 35  PFFPFHNRLVN 3
           P FPFHN+LVN
Sbjct: 249 PVFPFHNKLVN 259

[11][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
           RepID=RPOA_ARAHI
          Length = 337

 Score =  365 bits (938), Expect = 1e-99
 Identities = 177/191 (92%), Positives = 182/191 (95%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNLNEIVLRSNLYG RNA+ICVQGPGYITARDIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGARNAIICVQGPGYITARDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IIDNTQHIATLTE IDLCI LKIERNRGYSLK+ N FEDRSYPIDAVFMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQH VTL
Sbjct: 189 YGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHHVTL 248

Query: 35  PFFPFHNRLVN 3
           P FPFHNRLVN
Sbjct: 249 PLFPFHNRLVN 259

[12][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
           cordifolium RepID=RPOA_AETCO
          Length = 333

 Score =  357 bits (915), Expect = 5e-97
 Identities = 173/190 (91%), Positives = 181/190 (95%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNL EIVLRSNLYGT NALICVQGPG ITARDIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGSITARDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IIDNTQHIATLTEPIDLCI L+IERNRGYSLKM N+FED SYPIDA+FMPV+NANHSIHS
Sbjct: 129 IIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG GNEKQEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQH+VTL
Sbjct: 189 YGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHKVTL 248

Query: 35  PFFPFHNRLV 6
           P FPFHNRLV
Sbjct: 249 PLFPFHNRLV 258

[13][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
           grandiflorum RepID=RPOA_AETGR
          Length = 333

 Score =  351 bits (901), Expect = 2e-95
 Identities = 170/190 (89%), Positives = 179/190 (94%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NIPHDYSNI GIQESVHEILMNL EIVLRSNLYGT NALICVQGPGYITARDIILPP+VE
Sbjct: 69  NIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGYITARDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+DNTQHIATLTEPIDLCI L+IERNRGYSLKM N FED SYPIDA+FMPV+NANHSIHS
Sbjct: 129 IMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG GNE QEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYLENN+ +VTL
Sbjct: 189 YGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNEDKVTL 248

Query: 35  PFFPFHNRLV 6
           P FPFHNRLV
Sbjct: 249 PLFPFHNRLV 258

[14][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
          Length = 327

 Score =  337 bits (863), Expect = 5e-91
 Identities = 159/188 (84%), Positives = 175/188 (93%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+DI+LPP+VEI
Sbjct: 70  IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAFICVKGPGYVTAQDIVLPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPIDL I L+IERNRGY +K  NNF+D SYPIDAVFMPV+NANHSIHSY
Sbjct: 130 VDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           G GNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLH EEE FYLENNQH+VTLP
Sbjct: 190 GTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLENNQHKVTLP 249

Query: 32  FFPFHNRL 9
           FFPFH+RL
Sbjct: 250 FFPFHDRL 257

[15][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
           RepID=B5AH30_9ROSI
          Length = 329

 Score =  330 bits (847), Expect = 4e-89
 Identities = 156/188 (82%), Positives = 172/188 (91%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS IAGIQESVHEILMNL EIVLRSNLYGTRNA IC +GPGY+TA+DIILPP+VEI
Sbjct: 72  IPHEYSIIAGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQDIILPPSVEI 131

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPIDLCI L+IERNRGY +K  NNF D SYPID VFMPV N NHSIHSY
Sbjct: 132 VDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPVRNVNHSIHSY 191

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE  +LEN+QH+VTLP
Sbjct: 192 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHLENSQHKVTLP 251

Query: 32  FFPFHNRL 9
           FFPFH++L
Sbjct: 252 FFPFHDKL 259

[16][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
           hirsutum RepID=RPOA_GOSHI
          Length = 329

 Score =  329 bits (844), Expect = 8e-89
 Identities = 155/189 (82%), Positives = 169/189 (89%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLR NLYGTRNA IC +GPGY+TA+DIILPP+VEI
Sbjct: 72  IPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEI 131

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQH+A+LTEPIDLCI L+IERNRGY +K   NF D SYPIDAVFMPV NANHSIH Y
Sbjct: 132 VDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHCY 191

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE  +LENNQH VTLP
Sbjct: 192 GNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLENNQHDVTLP 251

Query: 32  FFPFHNRLV 6
           FFPFH+RLV
Sbjct: 252 FFPFHDRLV 260

[17][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
           globulus subsp. globulus RepID=RPOA_EUCGG
          Length = 337

 Score =  319 bits (818), Expect = 8e-86
 Identities = 153/188 (81%), Positives = 170/188 (90%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRSNLYGTRNA ICV+GPG +TA+DIILP +VEI
Sbjct: 70  IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQDIILPTSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQ+IA LTEPI+LCI L+IERNRGY +K   NF+D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE  +LENNQ++VTLP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQYKVTLP 249

Query: 32  FFPFHNRL 9
           FF FH+RL
Sbjct: 250 FFTFHDRL 257

[18][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
           sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
          Length = 313

 Score =  318 bits (814), Expect = 2e-85
 Identities = 152/188 (80%), Positives = 167/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR A IC +GPGY+TA+DII PP+VEI
Sbjct: 64  IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEI 123

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA L EPIDLCI L+IERNRGYS+K  NNF+D SYPIDAVFMPV NANHSIHSY
Sbjct: 124 VDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHSY 183

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+ TLP
Sbjct: 184 GNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTLP 243

Query: 32  FFPFHNRL 9
              FH+RL
Sbjct: 244 PLTFHDRL 251

[19][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
           RepID=RPOA_VITVI
          Length = 331

 Score =  318 bits (814), Expect = 2e-85
 Identities = 152/188 (80%), Positives = 167/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR A IC +GPGY+TA+DII PP+VEI
Sbjct: 70  IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA L EPIDLCI L+IERNRGYS+K  NNF+D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+ TLP
Sbjct: 190 GNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTLP 249

Query: 32  FFPFHNRL 9
              FH+RL
Sbjct: 250 PLTFHDRL 257

[20][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
           occidentalis RepID=RPOA_PLAOC
          Length = 337

 Score =  317 bits (811), Expect = 5e-85
 Identities = 150/188 (79%), Positives = 167/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTRNA IC++GPGY+TA+DII PP+VE 
Sbjct: 70  IPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRNASICIRGPGYVTAQDIISPPSVET 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA LTEPID CIEL+IERNRGY +K  NN +D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH +EE   LE+NQ+ VTLP
Sbjct: 190 ANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLEDNQNGVTLP 249

Query: 32  FFPFHNRL 9
           FF FH+RL
Sbjct: 250 FFTFHDRL 257

[21][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
           barbadense RepID=RPOA_GOSBA
          Length = 330

 Score =  315 bits (807), Expect = 2e-84
 Identities = 152/190 (80%), Positives = 166/190 (87%), Gaps = 1/190 (0%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLR NLYGTRNA IC +GPGY+TA+DIILPP+VEI
Sbjct: 72  IPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEI 131

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQH+A+LTEPIDLCI L+IERNRGY +K   NF D SYPIDAVFMPV NANHSIH Y
Sbjct: 132 VDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHCY 191

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFI FLH +EE  +LENNQH VTL 
Sbjct: 192 GNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHLENNQHDVTLH 251

Query: 32  -FFPFHNRLV 6
            FFPFH RLV
Sbjct: 252 FFFPFHYRLV 261

[22][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
           RepID=C6TK62_SOYBN
          Length = 269

 Score =  313 bits (801), Expect = 8e-84
 Identities = 148/188 (78%), Positives = 167/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A IC +GPGY+TA+DIILPP+VEI
Sbjct: 70  IPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA +TEP++LCIELKIERNRGY +K   NF+D SYPIDA FMPV N NHSIHSY
Sbjct: 130 VDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F LENNQH+VTLP
Sbjct: 190 VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLP 249

Query: 32  FFPFHNRL 9
            F FH+ L
Sbjct: 250 LFTFHDIL 257

[23][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
           RepID=RPOA_SOYBN
          Length = 333

 Score =  313 bits (801), Expect = 8e-84
 Identities = 148/188 (78%), Positives = 167/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A IC +GPGY+TA+DIILPP+VEI
Sbjct: 70  IPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA +TEP++LCIELKIERNRGY +K   NF+D SYPIDA FMPV N NHSIHSY
Sbjct: 130 VDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F LENNQH+VTLP
Sbjct: 190 VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLP 249

Query: 32  FFPFHNRL 9
            F FH+ L
Sbjct: 250 LFTFHDIL 257

[24][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
           RepID=RPOA_POPAL
          Length = 339

 Score =  313 bits (801), Expect = 8e-84
 Identities = 149/188 (79%), Positives = 168/188 (89%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH++S I GIQES+HEILMNL EIVLRSNLYGT NA ICV+GPG +TA+DIILPP+VEI
Sbjct: 70  IPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHNASICVKGPGCVTAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           IDNTQHIA+L EPIDL I L+IERNRGY +K   NF+D SY IDAVFMPV NANHS+HSY
Sbjct: 130 IDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE+F+LE NQH++TLP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHLEKNQHKITLP 249

Query: 32  FFPFHNRL 9
            F FH+RL
Sbjct: 250 LFAFHDRL 257

[25][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
          Length = 339

 Score =  312 bits (799), Expect = 1e-83
 Identities = 149/188 (79%), Positives = 168/188 (89%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH++S IAGIQES+HEILMNL  +VL+SNLYGT +A I V+GPGY+TA+DIILPP VEI
Sbjct: 70  IPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           IDNTQHIA+LTE IDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV NANHS+HSY
Sbjct: 130 IDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE  +LE NQH+VTLP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLP 249

Query: 32  FFPFHNRL 9
            F FH RL
Sbjct: 250 LFTFHGRL 257

[26][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
           RepID=UPI0001596B8A
          Length = 333

 Score =  311 bits (797), Expect = 2e-83
 Identities = 148/189 (78%), Positives = 167/189 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQES+HEILMNL EIVL+SNLYGTR+A IC +GPGY+TA+DIILPP+VEI
Sbjct: 70  IPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA LTEPI+LCIEL+IER RGY +K  NN +D SY IDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE    ENNQH+VTLP
Sbjct: 190 VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKVTLP 249

Query: 32  FFPFHNRLV 6
            F FH+RL+
Sbjct: 250 LFTFHDRLL 258

[27][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
           RepID=C3UP04_9MAGN
          Length = 328

 Score =  311 bits (796), Expect = 3e-83
 Identities = 149/188 (79%), Positives = 170/188 (90%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+DII PP+VEI
Sbjct: 70  IPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA+LTEPIDLCIEL+IERNRGY +K  NN ++RSYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWT+GSLTPKEAL++ASRNLI+LFIPFLH EE+   LE+NQ +VTLP
Sbjct: 190 GNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLEDNQSRVTLP 249

Query: 32  FFPFHNRL 9
           FF FH+ L
Sbjct: 250 FFTFHDGL 257

[28][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
           RepID=A7KVR0_OLEEU
          Length = 280

 Score =  311 bits (796), Expect = 3e-83
 Identities = 150/189 (79%), Positives = 168/189 (88%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+PH+YS IAGIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP VE
Sbjct: 43  NVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVE 102

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+DNTQHIA+LTEPIDLCI L+I+RNRGY +KM +NF+D SYPIDAVFMPV NANHSIHS
Sbjct: 103 IVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNANHSIHS 162

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEE   LE+NQH V L
Sbjct: 163 YGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDNQHTVPL 222

Query: 35  PFFPFHNRL 9
               FH++L
Sbjct: 223 SPLTFHDKL 231

[29][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
           RepID=RPOA_SOLBU
          Length = 337

 Score =  311 bits (796), Expect = 3e-83
 Identities = 147/188 (78%), Positives = 167/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP VEI
Sbjct: 70  VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPID CI L+IERNRGY +K  +NF+D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+  YL++NQH V L 
Sbjct: 190 GNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLS 249

Query: 32  FFPFHNRL 9
            F FH++L
Sbjct: 250 PFTFHDKL 257

[30][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
           RepID=RPOA_MORIN
          Length = 323

 Score =  311 bits (796), Expect = 3e-83
 Identities = 151/188 (80%), Positives = 166/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+DIILPP+VEI
Sbjct: 70  IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA LTEPI LCIEL+IERNRGY +K  NNF++ SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGNE QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPF H EE   +LENNQH+ TLP
Sbjct: 190 VNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HLENNQHKGTLP 246

Query: 32  FFPFHNRL 9
            F FH RL
Sbjct: 247 LFNFHGRL 254

[31][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
           RepID=B5LMQ5_CICAR
          Length = 333

 Score =  310 bits (795), Expect = 4e-83
 Identities = 148/189 (78%), Positives = 166/189 (87%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQES+HEILMNL EIVLRSNLYGTR+A IC +GPG +TA+DIILPP+VEI
Sbjct: 70  IPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGSVTAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA LTEPI+LC+ELK+ERNRGY +K  NN +D SY IDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEAL +ASRNLI+LFIPFLH EE+   LENNQ +VTLP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNLENNQQKVTLP 249

Query: 32  FFPFHNRLV 6
            F FH+R V
Sbjct: 250 LFTFHDRFV 258

[32][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
           lycopersicum RepID=RPOA_SOLLC
          Length = 337

 Score =  310 bits (795), Expect = 4e-83
 Identities = 147/188 (78%), Positives = 166/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GIQESVHEILMNL EIVLRSNLYGT  A ICV+GPGY+TA+DIILPP VEI
Sbjct: 70  VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQDIILPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPID CI L+IERNRGY +K  +NF+D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+  YL++NQH V L 
Sbjct: 190 GNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLS 249

Query: 32  FFPFHNRL 9
            F FH++L
Sbjct: 250 PFTFHDKL 257

[33][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
           trichocarpa RepID=RPOA_POPTR
          Length = 339

 Score =  310 bits (795), Expect = 4e-83
 Identities = 148/188 (78%), Positives = 167/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH++S I GIQES+HEILMNL EIVLRSNLYGT +A ICV+GPG +TA+DIILPP+VEI
Sbjct: 70  IPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHDASICVKGPGCVTAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           IDNTQHIA+L EPIDL I L+IERNRGY +K   NF+D SY IDAVFMPV NANHS+HSY
Sbjct: 130 IDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE F+LE NQH++TLP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLEKNQHKITLP 249

Query: 32  FFPFHNRL 9
            F FH+RL
Sbjct: 250 LFAFHDRL 257

[34][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
           RepID=RPOA_ATRBE
          Length = 337

 Score =  310 bits (795), Expect = 4e-83
 Identities = 146/188 (77%), Positives = 166/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GIQESVHEI+MNL EIVLRSNLYGT  A +CV+GPGY+TA+DIILPP VEI
Sbjct: 70  VPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTSEASVCVKGPGYVTAQDIILPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPID CI L+IERNRGY +K   NF+D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+  YL++NQH V L 
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLS 249

Query: 32  FFPFHNRL 9
            F FH++L
Sbjct: 250 PFTFHDKL 257

[35][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
           RepID=RPOA_NICSY
          Length = 337

 Score =  308 bits (790), Expect = 1e-82
 Identities = 146/188 (77%), Positives = 167/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GIQESVHEILMNL EI+LRSNLYGT +A ICV+GPG +TA+DIILPP VEI
Sbjct: 70  VPHEYSTITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQDIILPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPID CI L+IERNRGY +K  +NF+D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+  YL++NQH V L 
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLS 249

Query: 32  FFPFHNRL 9
            F FH++L
Sbjct: 250 PFTFHDKL 257

[36][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
           RepID=RPOA_CUCSA
          Length = 333

 Score =  308 bits (790), Expect = 1e-82
 Identities = 148/190 (77%), Positives = 168/190 (88%), Gaps = 2/190 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPG +TA+DIILPP+VEI
Sbjct: 70  IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA L EPI+LCIELKIERNRGY ++  NNF+D SYP+DA+FMPV N NHSIHSY
Sbjct: 130 VDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE--ETFYLENNQHQVT 39
            NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE  E F+L+NN+ +VT
Sbjct: 190 VNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKVT 249

Query: 38  LPFFPFHNRL 9
           LP F FH +L
Sbjct: 250 LPLFTFHEKL 259

[37][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
           tomentosiformis RepID=RPOA_NICTO
          Length = 337

 Score =  308 bits (789), Expect = 2e-82
 Identities = 146/188 (77%), Positives = 167/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP VEI
Sbjct: 70  VPHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTE ID CI L+I+RNRGY +K  +NF+D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+  YL++NQH V L 
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHTVPLS 249

Query: 32  FFPFHNRL 9
            F FH++L
Sbjct: 250 PFTFHDKL 257

[38][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
           RepID=RPOA_BUXMI
          Length = 337

 Score =  307 bits (787), Expect = 3e-82
 Identities = 147/188 (78%), Positives = 167/188 (88%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YSNI GI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GP ++TA+DII PP+VEI
Sbjct: 70  IPHEYSNIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRHVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           ID TQHIA+LTEPIDLCI L+IERNRGY++K   N +D  YPIDAVFMPV NANHSIHSY
Sbjct: 130 IDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH  EE F L++NQ++V LP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFILKDNQNKVALP 249

Query: 32  FFPFHNRL 9
            F FH+RL
Sbjct: 250 LFTFHDRL 257

[39][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
          Length = 366

 Score =  307 bits (786), Expect = 4e-82
 Identities = 147/188 (78%), Positives = 164/188 (87%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRSNLYGT NA ICV+GPG +TA+DI+LPP+VEI
Sbjct: 70  IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           IDNTQHIA+L EPI LCI L+IERNRGY +K  NNF+D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 IDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE  +L NN++ VT P
Sbjct: 190 GNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGNNKYNVTFP 249

Query: 32  FFPFHNRL 9
            F FH +L
Sbjct: 250 LFTFHKKL 257

[40][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
           RepID=RPOA_PANGI
          Length = 353

 Score =  306 bits (784), Expect = 7e-82
 Identities = 147/189 (77%), Positives = 166/189 (87%), Gaps = 1/189 (0%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS + GIQESVHEILMNL EI+L+SNLYGT +A IC++GPGY+TA+DII PP VEI
Sbjct: 70  IPHEYSTLVGIQESVHEILMNLKEIILKSNLYGTCDASICIRGPGYVTAQDIISPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSIHS 216
           +DNTQHIA+L EPIDLCI L+IERNRGY +K  +NNF+D SYPIDAVFMPV NANHSIHS
Sbjct: 130 VDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSIHS 189

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH EEE  +L +NQH V L
Sbjct: 190 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLHLADNQHTVPL 249

Query: 35  PFFPFHNRL 9
           P F FH +L
Sbjct: 250 PPFTFHEKL 258

[41][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
           RepID=RPOA_DAUCA
          Length = 353

 Score =  306 bits (784), Expect = 7e-82
 Identities = 147/189 (77%), Positives = 168/189 (88%), Gaps = 1/189 (0%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS + GIQESVH+ILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP VE+
Sbjct: 70  IPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEV 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSIHS 216
           +DNTQHIA+LTEPI+LCI L+IERNRGY +K  +NN +D SYPIDAVFMPV NANHSIHS
Sbjct: 130 VDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRNANHSIHS 189

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE  +L NNQH V L
Sbjct: 190 YGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLANNQHMVPL 249

Query: 35  PFFPFHNRL 9
           P F FH++L
Sbjct: 250 PPFTFHDKL 258

[42][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
           RepID=RPOA_OENEH
          Length = 366

 Score =  305 bits (780), Expect = 2e-81
 Identities = 146/188 (77%), Positives = 163/188 (86%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRSNLYGT NA ICV+GPG +TA+DI+LPP+VEI
Sbjct: 70  IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           IDNTQHIA+L EPI LCI L+IERNRGY +K  NNF+D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 IDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE  +L  N++ VT P
Sbjct: 190 GNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGKNKYNVTFP 249

Query: 32  FFPFHNRL 9
            F FH +L
Sbjct: 250 LFTFHKKL 257

[43][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
           RepID=RPOA_CITSI
          Length = 328

 Score =  304 bits (778), Expect = 4e-81
 Identities = 147/189 (77%), Positives = 169/189 (89%), Gaps = 1/189 (0%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL +IVLRSNLYGT +ALICV+GPGY+TA+DI+LPP+VEI
Sbjct: 70  IPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFED-RSYPIDAVFMPVENANHSIHS 216
           +DNTQHIA+LTEPIDL I L+IER+RGY++K  N F+D   YPIDAVFMPV NANHSI S
Sbjct: 130 VDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMPVRNANHSIQS 189

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILFLEIWTNGSLTPKEALH+ASR+LI+LFIPFL  E+E   LENNQ++VTL
Sbjct: 190 YGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLPLENNQYKVTL 249

Query: 35  PFFPFHNRL 9
           PFF FH+RL
Sbjct: 250 PFFTFHDRL 258

[44][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
           RepID=B1NWI2_MANES
          Length = 343

 Score =  303 bits (776), Expect = 6e-81
 Identities = 149/192 (77%), Positives = 169/192 (88%), Gaps = 4/192 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH++S IAGIQES+HEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP VEI
Sbjct: 70  IPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQDIILPPFVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSYPIDAVFMPVENANHSIH 219
           IDNTQHIA+LT+ IDLCI L+IERNRGY +K +NNF  +D SY IDAVFMPV NANHS+H
Sbjct: 130 IDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMPVRNANHSVH 189

Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL--ENNQHQ 45
           SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+ FIPFLH EEE  +L  E NQH+
Sbjct: 190 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLHLEIEKNQHK 249

Query: 44  VTLPFFPFHNRL 9
           VTLP F FH++L
Sbjct: 250 VTLPLFCFHDKL 261

[45][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
           RepID=RPOA_IPOPU
          Length = 337

 Score =  303 bits (776), Expect = 6e-81
 Identities = 146/187 (78%), Positives = 164/187 (87%)
 Frame = -3

Query: 569 PHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEII 390
           PH+YS IAGIQESVHEILMNL EIVLRSNLYGT +A ICV+GPG +TA DIILPP+VEI+
Sbjct: 71  PHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGCVTAEDIILPPSVEIV 130

Query: 389 DNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYG 210
           DNTQHIA LTEPID CI L+IERNRGY LK  +NFED SYPIDAVFMPV NANHSIHSYG
Sbjct: 131 DNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPVRNANHSIHSYG 190

Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPF 30
           NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE  +LE+ +H + L  
Sbjct: 191 NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDGEHTIPLSP 250

Query: 29  FPFHNRL 9
             FH+++
Sbjct: 251 LSFHDKV 257

[46][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
           RepID=RPOA_COFAR
          Length = 335

 Score =  303 bits (775), Expect = 8e-81
 Identities = 145/188 (77%), Positives = 165/188 (87%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS IAGIQESVHEILMNL EIV RSNLYGT +A ICV+GPGY+TA+DI+LPP VEI
Sbjct: 70  VAHEYSTIAGIQESVHEILMNLKEIVFRSNLYGTCDASICVRGPGYVTAQDIVLPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA L EPI+LCI L+IERNRGY +K   NF+D SYPIDAVFMP+ NAN+SIHSY
Sbjct: 130 VDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPIRNANYSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH+EE+  +LENNQH V L 
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHLENNQHTVPLA 249

Query: 32  FFPFHNRL 9
            F FH++L
Sbjct: 250 PFFFHDKL 257

[47][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
           nudiflorum RepID=RPOA_JASNU
          Length = 355

 Score =  301 bits (772), Expect = 2e-80
 Identities = 146/188 (77%), Positives = 164/188 (87%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+PH+YS IAGIQESVHEILMN  EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP VE
Sbjct: 69  NVPHEYSTIAGIQESVHEILMNFKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+DNTQHIA+LTEPIDLCI L+IERNRGY +KM +N +D SYPIDAVFMPV NANHSIHS
Sbjct: 129 IVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVRNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNEK EILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEET  LE+N H V L
Sbjct: 189 YGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLEDNHHTVPL 248

Query: 35  PFFPFHNR 12
               FH++
Sbjct: 249 SPLTFHDK 256

[48][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
           spicatus RepID=RPOA_CHLSC
          Length = 334

 Score =  301 bits (770), Expect = 3e-80
 Identities = 141/190 (74%), Positives = 165/190 (86%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GI+ES+HEI MNL EIVLRSNLYGTRNA ICV+GP Y+TA+DII PP+VEI
Sbjct: 70  VPHEYSTIVGIEESIHEIFMNLKEIVLRSNLYGTRNASICVRGPRYVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA+LTEPIDLCIEL+I+R+RGY +K  N +++ SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE   LE+N ++  +P
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRLEDNPNRFNIP 249

Query: 32  FFPFHNRLVN 3
           FF FH+ L N
Sbjct: 250 FFTFHDGLAN 259

[49][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
           RepID=RPOA_SPIOL
          Length = 335

 Score =  300 bits (767), Expect = 7e-80
 Identities = 146/188 (77%), Positives = 164/188 (87%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRSNLYGT  A ICV+GP  +TA+DIILPP VEI
Sbjct: 70  IPHEYSTILGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRGVTAQDIILPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPIDLCI L++ERNRGY +K  NNF+D S+PIDA+FMPV N NHSIHSY
Sbjct: 130 VDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH EE    LE+NQH+V+LP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEENV-NLEDNQHKVSLP 248

Query: 32  FFPFHNRL 9
            F FHNRL
Sbjct: 249 LFTFHNRL 256

[50][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
           RepID=RPOA_NANDO
          Length = 338

 Score =  299 bits (765), Expect = 1e-79
 Identities = 145/188 (77%), Positives = 164/188 (87%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GI+ESVHEILMNL EIVLRSNLYGT +A ICV+GP  ITA+DII PP+VEI
Sbjct: 70  IPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTCDASICVKGPINITAKDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA+LTEP DLCI L+IERNRGY +K  N  ++ SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+   LE+NQ++VTLP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIILEDNQNRVTLP 249

Query: 32  FFPFHNRL 9
           FF FH+ L
Sbjct: 250 FFTFHDGL 257

[51][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
           RepID=RPOA_PEA
          Length = 334

 Score =  298 bits (764), Expect = 2e-79
 Identities = 144/186 (77%), Positives = 162/186 (87%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQES+HEILMNL EIVLRSNLYGTR A IC +GPGY+TA+DIILP +VE+
Sbjct: 70  IPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTREASICFKGPGYVTAQDIILP-SVEV 128

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           IDNTQHIA LTEPI+LCIEL+IER RGY +K  NN +D SY IDAVFMPV NANHSIHSY
Sbjct: 129 IDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSY 188

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGN+KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE    ENNQH++TLP
Sbjct: 189 VNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKMTLP 248

Query: 32  FFPFHN 15
            F FH+
Sbjct: 249 LFTFHD 254

[52][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
           RepID=B8R4C0_TRISU
          Length = 337

 Score =  298 bits (762), Expect = 3e-79
 Identities = 145/191 (75%), Positives = 166/191 (86%), Gaps = 2/191 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQES+HEILMNL +IVLRSNLYGTR+A IC +GPGY+TARDIILPP+VEI
Sbjct: 70  IPHEYSTIVGIQESIHEILMNLKQIVLRSNLYGTRDASICFKGPGYVTARDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDA--VFMPVENANHSIH 219
           +DNTQHIA LTEPI+LCIEL+IER RGY  K  +N +D SY ID   VFMPV +AN+SIH
Sbjct: 130 VDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFMPVIHANYSIH 189

Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
           SY N NEKQEILFLEIWTNGSLTPKEAL++A+RNLI+LFIPFLH EEE F+ ENNQH+VT
Sbjct: 190 SYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENFHFENNQHKVT 249

Query: 38  LPFFPFHNRLV 6
           LP F FH+RLV
Sbjct: 250 LPLFAFHDRLV 260

[53][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
           tulipifera RepID=RPOA_LIRTU
          Length = 337

 Score =  297 bits (761), Expect = 3e-79
 Identities = 141/190 (74%), Positives = 166/190 (87%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +P++Y  I GI+ESVHEILMNL EIVLRS+LYGTR+A ICV+GP Y+TA+DII PP+VEI
Sbjct: 70  VPNEYYTIVGIEESVHEILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQDIIPPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA+LTEPIDLCIEL+IER+RGY +K  NN++D SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+   LE+N ++ T+P
Sbjct: 190 GNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVLEDNPNRFTVP 249

Query: 32  FFPFHNRLVN 3
            F FH+RL N
Sbjct: 250 LFTFHDRLAN 259

[54][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
           ancestrale RepID=B2XWQ5_FAGEA
          Length = 337

 Score =  297 bits (760), Expect = 4e-79
 Identities = 143/189 (75%), Positives = 163/189 (86%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRS  YGT +A ICV+GPG +TA+DII PP VEI
Sbjct: 70  IPHEYSTIVGIQESVHEILMNLKEIVLRSTFYGTCDASICVRGPGGVTAQDIISPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA LTEPIDL IEL++ERNRGY +K  NNF+D SYPID VFMPV N NHSIHSY
Sbjct: 130 VDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVRNVNHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFL+ E+E F+LE+NQ +VTLP
Sbjct: 190 SNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLEDNQDRVTLP 249

Query: 32  FFPFHNRLV 6
            F FH+RL+
Sbjct: 250 LFLFHDRLI 258

[55][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
           RepID=A9QAY1_9APIA
          Length = 338

 Score =  295 bits (755), Expect = 2e-78
 Identities = 144/191 (75%), Positives = 167/191 (87%), Gaps = 3/191 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS + GIQESVH+ILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP VE+
Sbjct: 70  IPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEV 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSIHS 216
           +DNTQHIA+LTEPI+L I L+IER+RGY +K  +NNF+D SYPIDAVFMP+ NANHSIHS
Sbjct: 130 VDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRNANHSIHS 189

Query: 215 Y--GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
           Y  GNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE  +L +NQH V
Sbjct: 190 YGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLADNQHMV 249

Query: 41  TLPFFPFHNRL 9
            LP F FH+ L
Sbjct: 250 PLPPFTFHDNL 260

[56][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7QC74_VITVI
          Length = 310

 Score =  295 bits (754), Expect = 2e-78
 Identities = 145/188 (77%), Positives = 160/188 (85%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR A IC +GPGY+TA+DII PP+VEI
Sbjct: 70  IPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA L EPIDLCI L+IERNRGY+          SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDNTQHIARLMEPIDLCIGLQIERNRGYN---------GSYPIDAVFMPVRNANHSIHSY 180

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNG+E+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+ TLP
Sbjct: 181 GNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKGTLP 240

Query: 32  FFPFHNRL 9
              FH+RL
Sbjct: 241 PLTFHDRL 248

[57][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
          Length = 284

 Score =  294 bits (753), Expect = 3e-78
 Identities = 142/190 (74%), Positives = 164/190 (86%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GI+ESVHEILMNL EIVLRSNLYGTR A ICV+GP  ITA DIILP +VEI
Sbjct: 70  VPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTREASICVKGPKTITAEDIILPASVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIATLTEP+DL I L+I+R+RGY ++ +NN +D SYPIDAVFMPV NANHSI+SY
Sbjct: 130 VDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVRNANHSIYSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+   LE N+ + TLP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLEENKSRFTLP 249

Query: 32  FFPFHNRLVN 3
            F FH++LVN
Sbjct: 250 LFTFHDKLVN 259

[58][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
           macranthus RepID=RPOA_RANMC
          Length = 346

 Score =  293 bits (751), Expect = 5e-78
 Identities = 142/187 (75%), Positives = 163/187 (87%), Gaps = 1/187 (0%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+DII PP+VEI
Sbjct: 70  IPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA+LTEP+D CI L+IE NRGY +K  NN +  SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ-HQVTL 36
           GNGNE QEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+   L++NQ + VTL
Sbjct: 190 GNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLKDNQKNGVTL 249

Query: 35  PFFPFHN 15
           PFF FH+
Sbjct: 250 PFFTFHD 256

[59][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
           oligandrum RepID=RPOA_ILLOL
          Length = 331

 Score =  293 bits (750), Expect = 6e-78
 Identities = 137/190 (72%), Positives = 164/190 (86%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GI+ESVHEILMNL EIV RS+LYGTR A ICV+GP Y+TA+DII PP+V+I
Sbjct: 70  VPHEYSTIVGIEESVHEILMNLKEIVFRSHLYGTRGASICVRGPRYVTAQDIISPPSVKI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQ+IA+LTEPIDLCIEL+IER+RGY +K  NN++D SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGS TPKEAL++ASRNLI+LF+PFLH EE+   +E+NQ++ T P
Sbjct: 190 GNGNEKQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINVEDNQNRATAP 249

Query: 32  FFPFHNRLVN 3
            F FH+ L N
Sbjct: 250 LFTFHDGLTN 259

[60][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
           floridus var. glaucus RepID=RPOA_CALFG
          Length = 340

 Score =  293 bits (750), Expect = 6e-78
 Identities = 141/192 (73%), Positives = 168/192 (87%), Gaps = 2/192 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GI+ESVHEILMNL EIVL+SNLYGTR+A ICV+GP Y+TA+DII PP+VEI
Sbjct: 70  VPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA+LTEPI+LCIEL+IER+RGY +K  NN++D SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQVT 39
           G+GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+  +  LE+NQ++ T
Sbjct: 190 GSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNRFT 249

Query: 38  LPFFPFHNRLVN 3
           +  F  H+RL N
Sbjct: 250 VSPFTLHDRLGN 261

[61][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
           RepID=RPOA_ACOGR
          Length = 337

 Score =  293 bits (749), Expect = 8e-78
 Identities = 140/190 (73%), Positives = 164/190 (86%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS IAGI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GP  +TA+DII PP+VE+
Sbjct: 70  VPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEV 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE    E NQ++ T+P
Sbjct: 190 GNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVP 249

Query: 32  FFPFHNRLVN 3
            F F +RL N
Sbjct: 250 PFTFPDRLAN 259

[62][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
           RepID=RPOA_ACOCL
          Length = 337

 Score =  293 bits (749), Expect = 8e-78
 Identities = 140/190 (73%), Positives = 164/190 (86%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS IAGI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GP  +TA+DII PP+VE+
Sbjct: 70  VPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEV 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE    E NQ++ T+P
Sbjct: 190 GNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVP 249

Query: 32  FFPFHNRLVN 3
            F F +RL N
Sbjct: 250 PFTFPDRLAN 259

[63][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
           demersum RepID=RPOA_CERDE
          Length = 337

 Score =  292 bits (748), Expect = 1e-77
 Identities = 140/190 (73%), Positives = 161/190 (84%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS I GI+ESVHEILMNL EIVLRSNLYGT +A ICV+GP  +TA+DII PP+VEI
Sbjct: 70  VTHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTLDASICVRGPRSVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA LTEPIDLCI L+IER+RGY LK  NN++D SYPID VFMPV NANHSIHSY
Sbjct: 130 VDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNG EKQEILFLEIWTNGSLTPKEAL++ASRNLINLFIPFLH EE+   LE++++  T+P
Sbjct: 190 GNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILLEDSENISTVP 249

Query: 32  FFPFHNRLVN 3
            F FHN L N
Sbjct: 250 LFTFHNELAN 259

[64][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
           RepID=Q4FGA0_TYPLA
          Length = 339

 Score =  292 bits (747), Expect = 1e-77
 Identities = 140/190 (73%), Positives = 164/190 (86%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GI+ESVHEIL+NL EIVLRSNLYG R+A ICV+GP Y+TA+DIILPP+VEI
Sbjct: 70  VPHEYSTIIGIEESVHEILLNLKEIVLRSNLYGVRDASICVRGPRYVTAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA LTEPIDL IEL+I+R+RGY ++ +NN +D SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE    E N+++ TLP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFTLP 249

Query: 32  FFPFHNRLVN 3
           F  F +RL N
Sbjct: 250 FLTFQDRLTN 259

[65][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
           RepID=Q4FGA2_NUPAD
          Length = 336

 Score =  291 bits (745), Expect = 2e-77
 Identities = 137/190 (72%), Positives = 163/190 (85%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GI+ESVHEILMNL +IV RS+LYGT +A ICV+GP ++TA+DII PP+VEI
Sbjct: 70  VPHEYSTIVGIEESVHEILMNLKKIVFRSDLYGTLDASICVRGPRHVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA LTEP+DLCIELKIER RGY ++  NN++D SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+   +E+N  + T+P
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINIEDNLKRATVP 249

Query: 32  FFPFHNRLVN 3
           FF FH+ L N
Sbjct: 250 FFTFHDGLDN 259

[66][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
           vulgaris RepID=RPOA_PHAVU
          Length = 333

 Score =  291 bits (745), Expect = 2e-77
 Identities = 139/189 (73%), Positives = 161/189 (85%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GI+ESVHEI MNL EIVL+SN+YG ++A I  +GPGYITA+DIILPP+VEI
Sbjct: 70  IPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGIQDASISFKGPGYITAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DN QHIA +TEP+ LCIELKIERNRGY +K   NF+D SY IDA FMPV N N+SIHSY
Sbjct: 130 VDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI LFIPFLH EE+ F+LE NQH+VTLP
Sbjct: 190 VNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHLEKNQHKVTLP 249

Query: 32  FFPFHNRLV 6
            F FH+ LV
Sbjct: 250 LFTFHDILV 258

[67][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
           RepID=RPOA_PHAAN
          Length = 333

 Score =  290 bits (743), Expect = 4e-77
 Identities = 139/189 (73%), Positives = 162/189 (85%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GI+ESVHEI MNL EIVL+SN+YGT++A I  +GPGYITA+DIILPP+VEI
Sbjct: 70  IPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGTQDASISFKGPGYITAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DN QHIA +TEP++LCIELKIERNRGY +K   NF+D SY IDA FMPV N N+SIHSY
Sbjct: 130 VDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI+LFIPFLH EEE F LE  +H+VTLP
Sbjct: 190 VNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNLEKKKHKVTLP 249

Query: 32  FFPFHNRLV 6
            F FH+ LV
Sbjct: 250 LFTFHDILV 258

[68][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
           caeruleum RepID=A9QC95_TRACE
          Length = 337

 Score =  290 bits (741), Expect = 7e-77
 Identities = 140/183 (76%), Positives = 159/183 (86%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS + GIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DII PP VEI
Sbjct: 70  LPHEYSTLVGIQESVHEILMNLKEIVLRSNLYGTCDAAICVKGPGYVTAQDIISPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           IDNTQHIA+LTEPI+LCI L+IERNRGY +K + NF+D SYPIDAVFMPV N NHSI+SY
Sbjct: 130 IDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPVRNVNHSIYSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           G GN+K EILFLEIWTNGSLTPKEALH+A+RNLI+LFIPFLH EEE   LE+NQH   LP
Sbjct: 190 GTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDLEDNQHM--LP 247

Query: 32  FFP 24
           F P
Sbjct: 248 FRP 250

[69][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
           RepID=A9QBD4_ELAOL
          Length = 339

 Score =  289 bits (739), Expect = 1e-76
 Identities = 138/190 (72%), Positives = 160/190 (84%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS I GI+ESVHEIL+NL EI+LRSNLYG  +A ICV+GP Y+TA+DII PP VEI
Sbjct: 70  VAHEYSTIVGIEESVHEILLNLKEIILRSNLYGVIDASICVRGPRYVTAQDIISPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA LTEPIDLCIEL+I+R+RGY +K +NN +D SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE    E N+++  LP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFPLP 249

Query: 32  FFPFHNRLVN 3
            F F NRL N
Sbjct: 250 LFTFQNRLTN 259

[70][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
           RepID=RPOA_PIPCE
          Length = 339

 Score =  287 bits (734), Expect = 5e-76
 Identities = 134/186 (72%), Positives = 162/186 (87%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH++S I GI+ESVHEI+MNL EIVLRSNLYGT +A IC++GP Y+TA+DIILPP+VEI
Sbjct: 70  VPHEFSTIVGIEESVHEIVMNLKEIVLRSNLYGTLDASICIRGPRYVTAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA LTE +DLCI+L+IER+RGYS+K  +N ED SYPIDA+FMPV NANHS+HSY
Sbjct: 130 VDATQHIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPVRNANHSVHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE   +LE+N + V L 
Sbjct: 190 GNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHLEDNANGVPLA 249

Query: 32  FFPFHN 15
            F FH+
Sbjct: 250 LFTFHD 255

[71][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
           RepID=Q5IBI2_9LAMI
          Length = 308

 Score =  285 bits (730), Expect = 1e-75
 Identities = 143/189 (75%), Positives = 157/189 (83%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+PH+YS IAGIQESV EILMNL EIVLRSNLYGT  A IC +GPGY+TA+DIILPP VE
Sbjct: 54  NVPHEYSTIAGIQESVPEILMNLKEIVLRSNLYGTCGASICARGPGYVTAQDIILPPCVE 113

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I DNTQHIA LTEPI  CI L+IER+RGY +K  + F+DRSYPIDAVFMPV N NHSIHS
Sbjct: 114 IGDNTQHIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNVNHSIHS 173

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           Y  GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE   LENNQ  V+ 
Sbjct: 174 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLENNQDTVSF 231

Query: 35  PFFPFHNRL 9
             F FH +L
Sbjct: 232 SPFSFHEKL 240

[72][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
           RepID=RPOA_LOTJA
          Length = 333

 Score =  285 bits (730), Expect = 1e-75
 Identities = 137/188 (72%), Positives = 158/188 (84%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H+YS I GIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPP+V I
Sbjct: 70  ISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA +TEPI LCI L+IER+RGY +    NF+D SY IDA+FMPV NANHSIHSY
Sbjct: 130 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE    ENN+H+VTLP
Sbjct: 190 VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLP 249

Query: 32  FFPFHNRL 9
            F  H+ L
Sbjct: 250 LFTCHDLL 257

[73][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
           morifolium RepID=Q4QZ04_CHRMO
          Length = 335

 Score =  284 bits (727), Expect = 3e-75
 Identities = 140/188 (74%), Positives = 159/188 (84%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H+YS I GIQESVHEILMNL EIVLRSNLYGT  A ICV+GPGY+TA+DIILPP VEI
Sbjct: 70  ISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIATLTEPI+L I L+IE+NRGY +K  N F+D SYPID VFMPV NANHSIHSY
Sbjct: 130 VDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGN  +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE   LE+NQH + LP
Sbjct: 190 ENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHMIPLP 247

Query: 32  FFPFHNRL 9
            F F+++L
Sbjct: 248 PFTFYDKL 255

[74][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
           RepID=A9QBM7_MUSAC
          Length = 339

 Score =  284 bits (726), Expect = 4e-75
 Identities = 135/190 (71%), Positives = 159/190 (83%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GI+ESVHEIL+NL EIVLRSN+YG R+A IC +GP Y+TA+DII PP+VEI
Sbjct: 70  VPHEYSTIIGIEESVHEILLNLKEIVLRSNIYGVRDASICARGPKYVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA LTEPIDLCI L+I R+RGY  K + N ++ SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE    + N+++ TLP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFKENKNRFTLP 249

Query: 32  FFPFHNRLVN 3
            F F +RL N
Sbjct: 250 IFTFQDRLTN 259

[75][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
           elephantipes RepID=RPOA_DIOEL
          Length = 337

 Score =  283 bits (724), Expect = 7e-75
 Identities = 136/190 (71%), Positives = 159/190 (83%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS + GI+ESVHEIL NL EIVLRSNLY  R+A ICV+GP Y+TA+DII PP VEI
Sbjct: 70  VPHEYSTVVGIEESVHEILFNLKEIVLRSNLYEIRDASICVRGPRYVTAQDIISPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQ+IA LTEPIDLCIEL+I+R+RGY +K   N +D SYPIDAVFMPV NANHSIHSY
Sbjct: 130 VDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ TLP
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINFEENKNKFTLP 249

Query: 32  FFPFHNRLVN 3
              F +RL N
Sbjct: 250 PLTFQDRLSN 259

[76][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
           RepID=B2LMM5_GUIAB
          Length = 335

 Score =  282 bits (722), Expect = 1e-74
 Identities = 140/188 (74%), Positives = 159/188 (84%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H+YS I GIQESVHEILMNL EIVLRSNLYGT  A ICV+GPGY+TA+DIILPP VEI
Sbjct: 70  ISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTYEASICVRGPGYVTAQDIILPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPI+L I L+IE+NRGY +K  N F+D SYPID VFMPV NANHSIHSY
Sbjct: 130 VDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGN  +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE   LE+NQH V LP
Sbjct: 190 ENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHIVPLP 247

Query: 32  FFPFHNRL 9
            F F+++L
Sbjct: 248 PFTFYDKL 255

[77][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
           RepID=B0FIU6_CUSJA
          Length = 332

 Score =  282 bits (721), Expect = 1e-74
 Identities = 143/185 (77%), Positives = 157/185 (84%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N  H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I  +GPGY+TA DIILPP VE
Sbjct: 69  NASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAEDIILPPHVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D+TQHIA LTEPIDLCI LKIERNRGY +K   NFED SYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           Y  GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E   LE+  H  T+
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADH--TI 244

Query: 35  PFFPF 21
           P  PF
Sbjct: 245 PLSPF 249

[78][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
           RepID=RPOA_CUSJA
          Length = 332

 Score =  282 bits (721), Expect = 1e-74
 Identities = 143/185 (77%), Positives = 157/185 (84%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N  H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I  +GPGY+TA DIILPP VE
Sbjct: 69  NASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAEDIILPPHVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D+TQHIA LTEPIDLCI LKIERNRGY +K   NFED SYPIDAVFMPV+NANHSIHS
Sbjct: 129 IVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           Y  GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E   LE+  H  T+
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADH--TI 244

Query: 35  PFFPF 21
           P  PF
Sbjct: 245 PLSPF 249

[79][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
           RepID=RPOA_CUSEX
          Length = 335

 Score =  282 bits (721), Expect = 1e-74
 Identities = 139/186 (74%), Positives = 160/186 (86%)
 Frame = -3

Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
           H+YS IAGIQESVHEI MNL EIVLRSNLYGT +A I ++GPG++TA+DIILPP VEI+D
Sbjct: 72  HEYSTIAGIQESVHEIFMNLKEIVLRSNLYGTCDASISIKGPGHVTAKDIILPPHVEIVD 131

Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
           +TQHIA LTEPIDLCI LKIERNRGY +K   NFED SYPIDAVFMPV NANHSIHSY  
Sbjct: 132 STQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPVRNANHSIHSY-- 189

Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFF 27
           GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE  +LE+  H ++L  F
Sbjct: 190 GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTISLSPF 249

Query: 26  PFHNRL 9
             ++++
Sbjct: 250 TVYDKV 255

[80][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
           lupuliformis RepID=B0FIU7_9ASTE
          Length = 335

 Score =  281 bits (719), Expect = 3e-74
 Identities = 141/185 (76%), Positives = 157/185 (84%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N  H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I ++GPGY+TA DIILPP VE
Sbjct: 69  NASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAEDIILPPHVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           ++D+TQHIA L EPIDLCI LKIERNRGY LK   NFED SYPIDAVFMPV+NANHSIHS
Sbjct: 129 VVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPVQNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           Y  GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E  +LE+     T+
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHLEDADR--TI 244

Query: 35  PFFPF 21
           P  PF
Sbjct: 245 PLSPF 249

[81][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
           RepID=RPOA_HELAN
          Length = 335

 Score =  281 bits (718), Expect = 3e-74
 Identities = 139/188 (73%), Positives = 159/188 (84%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H+Y+ I GIQESVHEILMNL EIVLRSNLYGT  A ICV+GPGY+TA+DIILPP VEI
Sbjct: 70  ISHEYATIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPI+L I L+IE+NRGY +K  N F+D SYPID VFMPV NANHSIHSY
Sbjct: 130 VDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGN  +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE   LE+NQH V LP
Sbjct: 190 ENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSLEDNQHIVPLP 247

Query: 32  FFPFHNRL 9
            F F+++L
Sbjct: 248 PFTFYDKL 255

[82][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
           RepID=Q4FG99_9ASPA
          Length = 337

 Score =  280 bits (717), Expect = 4e-74
 Identities = 136/190 (71%), Positives = 159/190 (83%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GI+ESVHEI +NL EIVL  NLYG R+A ICV+GP Y+TA+DII PP+VEI
Sbjct: 70  VPHEYSTIVGIEESVHEIFINLKEIVL--NLYGVRDASICVRGPRYVTAQDIISPPSVEI 127

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA LTEPIDL IEL+I+R+RGY +  +NN +D SYPIDAV MPV NANHSIHSY
Sbjct: 128 VDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNANHSIHSY 187

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE   + E N+++ TLP
Sbjct: 188 GNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHFEENKNRFTLP 247

Query: 32  FFPFHNRLVN 3
            F F NRL N
Sbjct: 248 LFTFQNRLTN 257

[83][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
           aphrodite subsp. formosana RepID=RPOA_PHAAO
          Length = 337

 Score =  280 bits (717), Expect = 4e-74
 Identities = 134/191 (70%), Positives = 160/191 (83%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+ H+YS IAGI+ESVHEIL+NL +IVLRSNLYG RNA ICV+GP YITA+DII PP+VE
Sbjct: 69  NVLHEYSTIAGIEESVHEILLNLKDIVLRSNLYGVRNASICVRGPKYITAQDIISPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D TQHIA LTEPI+LCIEL+I+R+RGY +K +N+  D SYPID V MPV NANHSIHS
Sbjct: 129 IVDTTQHIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNANHSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+L IPFLH EEE    + N+++  L
Sbjct: 189 YGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNFKENENRWNL 248

Query: 35  PFFPFHNRLVN 3
           P F F ++  N
Sbjct: 249 PPFSFQDKFTN 259

[84][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
           RepID=RPOA_LACSA
          Length = 335

 Score =  280 bits (716), Expect = 6e-74
 Identities = 139/188 (73%), Positives = 158/188 (84%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H+YS I GIQESVHEILMNL EIVLRSNLYGT  A ICV+GPGY+TA+DIILPP VEI
Sbjct: 70  ISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPI+L I L+IE+NRGY +K  N F+D SYPID VFMPV NANHSIHSY
Sbjct: 130 LDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
            NGN  +EILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH +EE   LE NQH V LP
Sbjct: 190 ENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNLEGNQHMVPLP 247

Query: 32  FFPFHNRL 9
            F F+++L
Sbjct: 248 PFTFYDKL 255

[85][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
           RepID=RPOA_NYMAL
          Length = 341

 Score =  279 bits (714), Expect = 1e-73
 Identities = 133/192 (69%), Positives = 161/192 (83%), Gaps = 2/192 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS + GI+ESVHEILMNL ++V RS+LYGT +A ICV+GP ++TA+DII PP+VEI
Sbjct: 70  VPHEYSTVVGIEESVHEILMNLKKMVFRSDLYGTLDASICVRGPRHVTAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA LTEP+DLCIELKIER RGY  +  NN++D SYPIDAV MPV NANHSIHSY
Sbjct: 130 VDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNANHSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF--YLENNQHQVT 39
           GNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+     +E+N  + +
Sbjct: 190 GNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINRNMEDNLKRAS 249

Query: 38  LPFFPFHNRLVN 3
           +PFF F + L N
Sbjct: 250 VPFFAFDDGLDN 261

[86][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
           granadensis RepID=RPOA_DRIGR
          Length = 339

 Score =  276 bits (705), Expect = 1e-72
 Identities = 137/192 (71%), Positives = 162/192 (84%), Gaps = 2/192 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+YS I GI+ESVH+ILMNL EIVLRSNLYGT +A I V+GP  +TA+DII PP+V++
Sbjct: 70  IPHEYSTIVGIEESVHQILMNLKEIVLRSNLYGTCDASIFVRGPRCVTAQDIISPPSVKM 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSY--PIDAVFMPVENANHSIH 219
           +D TQHIA+LTEPIDLCI L+IER+RGY +K  NN +D SY  PI+AV MPV NANHSIH
Sbjct: 130 VDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSMPVRNANHSIH 189

Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
           SYGNGNEKQEILFLEIWTNGSLTPKEALH+AS NLI+LFIPFLH EEE   LE++ ++ T
Sbjct: 190 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDINLEDSLNRGT 249

Query: 38  LPFFPFHNRLVN 3
           LPFF F ++L N
Sbjct: 250 LPFFTFQDKLAN 261

[87][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
           trichopoda RepID=RPOA_AMBTC
          Length = 334

 Score =  273 bits (699), Expect = 5e-72
 Identities = 130/188 (69%), Positives = 159/188 (84%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GI+ESVHEILMNL EI++RS+LYGTR+A ICV+GP Y+TA+DII PP+V+I
Sbjct: 70  VPHEYSTIVGIEESVHEILMNLKEIIVRSDLYGTRDAFICVRGPKYVTAQDIISPPSVKI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA++TEPI+ CI L+IERNRGY  + +N  +D SYPIDAV MPV NAN+SI  Y
Sbjct: 130 VDTTQHIASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSMPVRNANYSIQCY 187

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GN NEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE   +L+++Q+  T P
Sbjct: 188 GNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHLDDDQNIFTAP 247

Query: 32  FFPFHNRL 9
           FFPFH  L
Sbjct: 248 FFPFHEGL 255

[88][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
           RepID=RPOA_CUSRE
          Length = 335

 Score =  273 bits (697), Expect = 9e-72
 Identities = 138/185 (74%), Positives = 155/185 (83%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N  H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I ++GPGY+TA DIILPP VE
Sbjct: 69  NTSHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAEDIILPPHVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D+TQHIA LTEPI+  I LKIERN GY +K   NFED SYPIDA+FMPV NANHSI+S
Sbjct: 129 IVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPVRNANHSINS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           Y  GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE  +LE+  H  T+
Sbjct: 189 Y--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADH--TI 244

Query: 35  PFFPF 21
           P  PF
Sbjct: 245 PLSPF 249

[89][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
           RepID=RPOA_LOLPR
          Length = 341

 Score =  271 bits (694), Expect = 2e-71
 Identities = 131/191 (68%), Positives = 157/191 (82%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D +Q IA LTEPID CIEL+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[90][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
           stolonifera RepID=RPOA_AGRST
          Length = 339

 Score =  271 bits (693), Expect = 3e-71
 Identities = 131/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CIEL+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[91][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
           velutinum RepID=RPOA_AUSVE
          Length = 339

 Score =  270 bits (691), Expect = 4e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[92][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
           RepID=Q7H6H4_9POAL
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[93][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
           subsp. secaliformis RepID=Q539W0_PSAFR
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[94][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
           RepID=Q539V4_9POAL
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[95][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
           RepID=RPOA_PSAJU
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[96][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
           RepID=RPOA_FESSE
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[97][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
           californicus RepID=RPOA_ELYCL
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[98][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
           RepID=RPOA_ELYCA
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[99][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
           delileana RepID=RPOA_CRIDE
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[100][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
           RepID=RPOA_AGRCR
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[101][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
           uniaristata RepID=RPOA_AEGUN
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[102][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
           RepID=RPOA_AEGTA
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[103][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
           RepID=RPOA_AEGCM
          Length = 339

 Score =  270 bits (690), Expect = 6e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[104][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
           RepID=Q539V6_9POAL
          Length = 339

 Score =  270 bits (689), Expect = 8e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[105][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
          Length = 339

 Score =  270 bits (689), Expect = 8e-71
 Identities = 129/191 (67%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A IC++GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[106][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
           RepID=C7SM26_9POAL
          Length = 339

 Score =  270 bits (689), Expect = 8e-71
 Identities = 132/190 (69%), Positives = 154/190 (81%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DII PP+VEI
Sbjct: 70  VPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIISPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D TQHIA LTEPIDLCIEL+I+R+RGY  +   N +D SYPIDAV MPV N N+SI+S 
Sbjct: 130 VDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVRNVNYSIYSC 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GN NEK EILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE    E N+++ TLP
Sbjct: 190 GNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNFEENKNRFTLP 249

Query: 32  FFPFHNRLVN 3
              F  RL N
Sbjct: 250 LLTFQKRLTN 259

[107][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
           fragilis RepID=RPOA_PSAFR
          Length = 339

 Score =  270 bits (689), Expect = 8e-71
 Identities = 130/190 (68%), Positives = 155/190 (81%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VEI
Sbjct: 70  VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S 
Sbjct: 130 VDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSC 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T P
Sbjct: 190 GNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPP 249

Query: 32  FFPFHNRLVN 3
            F F  RL N
Sbjct: 250 LFTFQKRLTN 259

[108][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
           piliferum RepID=RPOA_HETPI
          Length = 339

 Score =  270 bits (689), Expect = 8e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPKYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[109][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
           festucoides RepID=RPOA_FESFE
          Length = 339

 Score =  270 bits (689), Expect = 8e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNLNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[110][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
           RepID=RPOA_EREDI
          Length = 339

 Score =  270 bits (689), Expect = 8e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFKKRLTN 259

[111][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
           RepID=RPOA_BROIN
          Length = 339

 Score =  270 bits (689), Expect = 8e-71
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFKKRLTN 259

[112][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
           RepID=Q539W2_9POAL
          Length = 339

 Score =  269 bits (688), Expect = 1e-70
 Identities = 130/190 (68%), Positives = 155/190 (81%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VEI
Sbjct: 70  VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S 
Sbjct: 130 VDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSC 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T P
Sbjct: 190 GNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPP 249

Query: 32  FFPFHNRLVN 3
            F F  RL N
Sbjct: 250 LFTFQKRLTN 259

[113][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
           rupestris RepID=RPOA_PSARU
          Length = 339

 Score =  269 bits (688), Expect = 1e-70
 Identities = 130/190 (68%), Positives = 155/190 (81%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VEI
Sbjct: 70  VPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S 
Sbjct: 130 VDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSC 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T P
Sbjct: 190 GNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPP 249

Query: 32  FFPFHNRLVN 3
            F F  RL N
Sbjct: 250 LFTFQKRLTN 259

[114][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
           RepID=RPOA_THIBE
          Length = 339

 Score =  268 bits (686), Expect = 2e-70
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PPFTFQKRLTN 259

[115][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
           elongatum RepID=RPOA_LOPEL
          Length = 339

 Score =  268 bits (685), Expect = 2e-70
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PPFTFKKRLTN 259

[116][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
           RepID=RPOA_HORBU
          Length = 339

 Score =  268 bits (685), Expect = 2e-70
 Identities = 129/191 (67%), Positives = 155/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
            +D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 TVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[117][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
           RepID=C8XU47_COILA
          Length = 339

 Score =  268 bits (684), Expect = 3e-70
 Identities = 128/191 (67%), Positives = 154/191 (80%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  NVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D TQ IA L EPID CIEL+I+R+RGY  ++  N +D SYPIDAVFMPV N N+SI S
Sbjct: 129 IVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE    E N++++T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTP 248

Query: 35  PFFPFHNRLVN 3
           P   F  R  N
Sbjct: 249 PLLTFQKRFTN 259

[118][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
           RepID=B8Y305_FESAR
          Length = 346

 Score =  268 bits (684), Expect = 3e-70
 Identities = 130/191 (68%), Positives = 156/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A I V+GP YITA+DIILPP+VE
Sbjct: 74  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASISVKGPRYITAQDIILPPSVE 133

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D +Q IA LTEPID CIEL+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 134 IVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 193

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 194 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 253

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 254 PLFTFQKRLTN 264

[119][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
           RepID=RPOA_SECST
          Length = 339

 Score =  268 bits (684), Expect = 3e-70
 Identities = 129/191 (67%), Positives = 155/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA L EPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[120][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
           RepID=RPOA_ELYHY
          Length = 339

 Score =  268 bits (684), Expect = 3e-70
 Identities = 129/191 (67%), Positives = 155/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDA  MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[121][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
           RepID=RPOA_SACHY
          Length = 339

 Score =  267 bits (683), Expect = 4e-70
 Identities = 127/191 (66%), Positives = 154/191 (80%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  NVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D TQ IA L EP+D CIEL+I+R+RGY  ++  N +D SYPIDAVFMPV N N+SI S
Sbjct: 129 IVDTTQPIANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE    E N++++T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTP 248

Query: 35  PFFPFHNRLVN 3
           P   F  R  N
Sbjct: 249 PLLTFQKRFTN 259

[122][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
           RepID=B2ZE98_9POAL
          Length = 339

 Score =  266 bits (681), Expect = 6e-70
 Identities = 130/191 (68%), Positives = 154/191 (80%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CIEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 249 PLLTFQKRLTN 259

[123][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
           RepID=Q3Y511_9POAL
          Length = 339

 Score =  266 bits (680), Expect = 8e-70
 Identities = 128/191 (67%), Positives = 155/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A IC++GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 IVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNG EK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[124][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
           RepID=RPOA_MAIZE
          Length = 339

 Score =  266 bits (679), Expect = 1e-69
 Identities = 127/191 (66%), Positives = 153/191 (80%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  NVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D TQ IA L EP+D CIEL+I+R+R Y  ++  N +D SYPIDAVFMPV N N+SI S
Sbjct: 129 IVDTTQPIANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N++++T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSFEENKNRLTP 248

Query: 35  PFFPFHNRLVN 3
           P   F  R  N
Sbjct: 249 PLLTFQKRFTN 259

[125][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
           distachyon RepID=B3TN81_BRADI
          Length = 338

 Score =  265 bits (678), Expect = 1e-69
 Identities = 128/191 (67%), Positives = 155/191 (81%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP  ITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILVNLKEIVLRSNLYGVRDASICVKGPRCITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           ++D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV MPV N N+SI S
Sbjct: 129 VVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P F F  RL N
Sbjct: 249 PLFTFQKRLTN 259

[126][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
           RepID=B7T309_EROTE
          Length = 328

 Score =  265 bits (676), Expect = 2e-69
 Identities = 129/181 (71%), Positives = 154/181 (85%), Gaps = 3/181 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+Y+ + GIQESV+EI+MNL EIVLRSNLYGTR+A ICV+GP  +TA+DIILPP+V I
Sbjct: 70  IPHEYTTLVGIQESVYEIVMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSVAI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVFMPVENANHSI 222
           +DNTQHI TLTEPID C+ L+IERNRGYS+K+   +N+ +DR YPIDAVFMPV+N NHSI
Sbjct: 130 VDNTQHIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVFMPVKNVNHSI 189

Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
           H+Y NG+   E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE  +LENNQ+Q 
Sbjct: 190 HAYENGS--HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENSHLENNQNQH 247

Query: 41  T 39
           T
Sbjct: 248 T 248

[127][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
           RepID=B0FIU4_9ASTE
          Length = 330

 Score =  265 bits (676), Expect = 2e-69
 Identities = 130/186 (69%), Positives = 154/186 (82%)
 Frame = -3

Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
           H+YS I GIQESVHEILMNL EIVLRSNLYGT +A IC++GP ++TA+DIILPP V+I+D
Sbjct: 72  HEYSTIGGIQESVHEILMNLKEIVLRSNLYGTCDASICIKGPRHVTAQDIILPPHVQIVD 131

Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
           NTQHIA LTEPID  I LKIERNRGY  K+  +F+D  YPIDA+FMPV+NANHSIHSY  
Sbjct: 132 NTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPVQNANHSIHSY-- 189

Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFF 27
           GNEKQEILFLEIWTNGSLTPKEALH+A+R LI+ FIPF H+EEE  YL + +H + L   
Sbjct: 190 GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYLADAEHTIPLSSL 249

Query: 26  PFHNRL 9
            F+N++
Sbjct: 250 IFYNKV 255

[128][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
           RepID=Q539W1_9POAL
          Length = 339

 Score =  264 bits (675), Expect = 3e-69
 Identities = 128/191 (67%), Positives = 154/191 (80%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPIDAV M V N N+SI S
Sbjct: 129 IVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 249 PLLTFQKRLTN 259

[129][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
           RepID=RPOA_SORBI
          Length = 339

 Score =  264 bits (674), Expect = 4e-69
 Identities = 126/191 (65%), Positives = 153/191 (80%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  NVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA L EPID CIEL+I+R+RGY  ++  N +D SYPIDAVFMPV N N+SI S
Sbjct: 129 IVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE    E +++++T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEESKNRLTP 248

Query: 35  PFFPFHNRLVN 3
           P   F  R  N
Sbjct: 249 PLLTFQKRFTN 259

[130][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
           stoloniformis RepID=RPOA_PSAST
          Length = 339

 Score =  263 bits (673), Expect = 5e-69
 Identities = 128/189 (67%), Positives = 152/189 (80%)
 Frame = -3

Query: 569 PHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEII 390
           PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VEI+
Sbjct: 71  PHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIV 130

Query: 389 DNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYG 210
           D  Q IA LTEPID CI+L+I+R+RGY  ++  N++D SYPI  V MPV N N+SI S G
Sbjct: 131 DTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNVNYSIFSCG 190

Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPF 30
           NGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T P 
Sbjct: 191 NGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPL 250

Query: 29  FPFHNRLVN 3
           F F  RL N
Sbjct: 251 FTFQKRLTN 259

[131][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
          Length = 339

 Score =  262 bits (670), Expect = 1e-68
 Identities = 128/191 (67%), Positives = 153/191 (80%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEPID CIEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI  
Sbjct: 129 IVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFY 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    E N+++ T 
Sbjct: 189 CGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTP 248

Query: 35  PFFPFHNRLVN 3
           P   F  +L N
Sbjct: 249 PLLTFQKKLTN 259

[132][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
          Length = 329

 Score =  260 bits (664), Expect = 6e-68
 Identities = 128/186 (68%), Positives = 154/186 (82%)
 Frame = -3

Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
           H+YS I GIQESVHEILMNL EIVLRSNLY + +A IC++GP ++TA+DIILPP V+I+D
Sbjct: 72  HEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQDIILPPHVQIVD 131

Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
           NTQHIA LTEPID  I LKIERNRGY  K+  +F+D SYPIDA+FMPV+NANHSIHSY  
Sbjct: 132 NTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHSY-- 189

Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFF 27
           GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF  +EEE  YL + +H + LP  
Sbjct: 190 GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIXLPPL 249

Query: 26  PFHNRL 9
            F+N++
Sbjct: 250 IFYNKV 255

[133][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
           RepID=Q2LIP2_9ORYZ
          Length = 317

 Score =  260 bits (664), Expect = 6e-68
 Identities = 128/191 (67%), Positives = 151/191 (79%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG RNA ICV+GP YITA+DIILPP+VE
Sbjct: 49  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVE 108

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI S
Sbjct: 109 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFS 168

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    + NQ++ T 
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENQNRFTS 228

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 229 PLLSFQKRLTN 239

[134][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
           RepID=B0FIU5_CUSEU
          Length = 329

 Score =  260 bits (664), Expect = 6e-68
 Identities = 128/186 (68%), Positives = 154/186 (82%)
 Frame = -3

Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
           H+YS I GIQESVHEILMNL EIVLRSNLY + +A IC++GP ++TA+DIILPP V+I+D
Sbjct: 72  HEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQDIILPPHVQIVD 131

Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
           NTQHIA LTEPID  I LKIERNRGY  K+  +F+D SYPIDA+FMPV+NANHSIHSY  
Sbjct: 132 NTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHSY-- 189

Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFF 27
           GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF  +EEE  YL + +H + LP  
Sbjct: 190 GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIPLPPL 249

Query: 26  PFHNRL 9
            F+N++
Sbjct: 250 IFYNKV 255

[135][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
           RepID=A9QC21_9ASTR
          Length = 332

 Score =  259 bits (662), Expect = 1e-67
 Identities = 132/188 (70%), Positives = 152/188 (80%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +PH+YS I GIQESVHEILMNL EIVLRSNLYGT  A ICV+GPGY+TA+DII PP VEI
Sbjct: 70  VPHEYSTIRGIQESVHEILMNLKEIVLRSNLYGTCEASICVKGPGYVTAQDIISPPYVEI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +DNTQHIA+LTEPI+L I L+IE+NR   LK  N F+D SY I AV MPV + N+SIHS 
Sbjct: 130 VDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPVRHMNYSIHSS 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNG  KQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EE    LENNQ ++  P
Sbjct: 190 GNG--KQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEGN--LENNQDRIPFP 245

Query: 32  FFPFHNRL 9
            F F+++L
Sbjct: 246 SFTFYDKL 253

[136][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
          Length = 317

 Score =  258 bits (660), Expect = 2e-67
 Identities = 127/191 (66%), Positives = 151/191 (79%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG RNA ICV+GP YITA+DIILPP+VE
Sbjct: 49  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVE 108

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI S
Sbjct: 109 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFS 168

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    + N+++ T 
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 229 PLLSFQKRLTN 239

[137][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
           RepID=Q2LIP1_ORYPU
          Length = 317

 Score =  258 bits (658), Expect = 3e-67
 Identities = 127/191 (66%), Positives = 151/191 (79%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG RNA ICV+GP YITA+DIILPP+VE
Sbjct: 49  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVE 108

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI S
Sbjct: 109 IVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFS 168

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    + N+++ T 
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 229 PLLSFQKRLTN 239

[138][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
           RepID=Q2LIN9_9ORYZ
          Length = 317

 Score =  256 bits (655), Expect = 7e-67
 Identities = 126/191 (65%), Positives = 152/191 (79%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP+VE
Sbjct: 49  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVE 108

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP+D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI S
Sbjct: 109 IVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNVNYSIFS 168

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    + N+++ T 
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 229 PLLSFQKRLTN 239

[139][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
           RepID=B0FIU3_9ASTE
          Length = 339

 Score =  256 bits (654), Expect = 9e-67
 Identities = 127/185 (68%), Positives = 156/185 (84%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N  H+YS IAGIQESVH+ILMNL EIVL+SNLYGT +A + ++GP Y+TA+DIILPP VE
Sbjct: 69  NASHEYSIIAGIQESVHDILMNLKEIVLKSNLYGTCDASLYIKGPRYVTAQDIILPPHVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D+TQHIA+LTEPI+LCI LKIERNRGY +K    F++ +Y +DAVFMPV N NHSI+S
Sbjct: 129 IVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPVLNVNHSIYS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           Y  GNEK+EILFLEIWTNGSLTPKEALH+A++NL++LFIPFL +EEE   LE+ +HQ+  
Sbjct: 189 Y--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNLEDAEHQI-- 244

Query: 35  PFFPF 21
           PF PF
Sbjct: 245 PFSPF 249

[140][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
           RepID=B7T379_9ROSI
          Length = 329

 Score =  256 bits (653), Expect = 1e-66
 Identities = 129/181 (71%), Positives = 150/181 (82%), Gaps = 3/181 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+Y+ I GIQES++EILMNL EIVLRSNL GTR+A ICV+GP  +TA+DIILP +  I
Sbjct: 70  IPHEYTTIVGIQESIYEILMNLKEIVLRSNLDGTRDASICVRGPRDVTAQDIILPNSAAI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLK--MSNNF-EDRSYPIDAVFMPVENANHSI 222
           +DNTQHI TLTEPID CI L+I+RNRGYS K  M  NF +DR YPIDAVF+PV+N NHSI
Sbjct: 130 VDNTQHIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVFLPVKNVNHSI 189

Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
           HSY NG+   E+LFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE F+ ENNQ++ 
Sbjct: 190 HSYENGS--HEMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFHFENNQNEH 247

Query: 41  T 39
           T
Sbjct: 248 T 248

[141][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
           RepID=UPI0000DD8D71
          Length = 425

 Score =  255 bits (651), Expect = 2e-66
 Identities = 125/191 (65%), Positives = 150/191 (78%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP+VE
Sbjct: 157 SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVE 216

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI +
Sbjct: 217 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 276

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    + N+++ T 
Sbjct: 277 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 336

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 337 PLLSFQKRLTN 347

[142][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
           Japonica Group RepID=Q8S1Q6_ORYSJ
          Length = 337

 Score =  255 bits (651), Expect = 2e-66
 Identities = 125/191 (65%), Positives = 150/191 (78%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI +
Sbjct: 129 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    + N+++ T 
Sbjct: 189 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 248

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 249 PLLSFQKRLTN 259

[143][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
          Length = 446

 Score =  255 bits (651), Expect = 2e-66
 Identities = 125/191 (65%), Positives = 150/191 (78%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP+VE
Sbjct: 178 SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVE 237

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI +
Sbjct: 238 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 297

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    + N+++ T 
Sbjct: 298 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 357

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 358 PLLSFQKRLTN 368

[144][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
           RepID=Q2LIP7_ORYSA
          Length = 317

 Score =  255 bits (651), Expect = 2e-66
 Identities = 125/191 (65%), Positives = 150/191 (78%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP+VE
Sbjct: 49  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVE 108

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI +
Sbjct: 109 IVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 168

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    + N+++ T 
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 229 PLLSFQKRLTN 239

[145][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
           RepID=RPOA_ORYSJ
          Length = 337

 Score =  255 bits (651), Expect = 2e-66
 Identities = 125/191 (65%), Positives = 150/191 (78%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP+VE
Sbjct: 69  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVE 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI +
Sbjct: 129 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    + N+++ T 
Sbjct: 189 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 248

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 249 PLLSFQKRLTN 259

[146][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
           RepID=B7T2T8_9ROSI
          Length = 329

 Score =  254 bits (650), Expect = 3e-66
 Identities = 124/179 (69%), Positives = 151/179 (84%), Gaps = 3/179 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+Y+   GIQESV+EI+MNL EIVLRS+LYGTR+A ICV+GP  +TA+DIILPP+V I
Sbjct: 70  IPHEYTTRVGIQESVYEIVMNLKEIVLRSSLYGTRDASICVRGPRDVTAQDIILPPSVSI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVFMPVENANHSI 222
           +DNTQHI TLTEPI+ C+ L+IERNRGYSL++   +N+ ++R YPIDAVFMPV+N NHSI
Sbjct: 130 VDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVFMPVKNVNHSI 189

Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
           HSY NG+   E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE  + ENNQ++
Sbjct: 190 HSYENGS--HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEKPHFENNQNE 246

[147][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
           Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
          Length = 446

 Score =  254 bits (648), Expect = 4e-66
 Identities = 124/191 (64%), Positives = 150/191 (78%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP+VE
Sbjct: 178 SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVE 237

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI +
Sbjct: 238 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 297

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN + EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE    + N+++ T 
Sbjct: 298 CGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 357

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 358 PLLSFQKRLTN 368

[148][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
           RepID=B7T413_9ROSI
          Length = 333

 Score =  254 bits (648), Expect = 4e-66
 Identities = 132/185 (71%), Positives = 153/185 (82%), Gaps = 7/185 (3%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+Y+ +AGI+ES++EILMNL EIVLRSNLYGTR+A ICV+GP  +TA+DIILPP+  I
Sbjct: 70  IPHEYTTMAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSTAI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNF-EDRSY--PIDAVFMPVENAN 231
           +DNTQHI TLTEPID C+ELKIER RGYS+K+   +N F  D  Y  PIDAVFMPV N N
Sbjct: 130 VDNTQHIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPIDAVFMPVRNVN 189

Query: 230 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY-LENN 54
           HSI+SY  G+  +EILFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE FY LENN
Sbjct: 190 HSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFYLLENN 247

Query: 53  QHQVT 39
           Q+Q T
Sbjct: 248 QNQHT 252

[149][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
           RepID=Q2LIP5_9ORYZ
          Length = 317

 Score =  253 bits (645), Expect = 1e-65
 Identities = 124/191 (64%), Positives = 149/191 (78%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP+VE
Sbjct: 49  SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVE 108

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI +
Sbjct: 109 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 168

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
            GNGN K EILFLEIWTNGSLTP EAL++ASRNLI+LF+PFLH EEE    + N+++ T 
Sbjct: 169 CGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTS 228

Query: 35  PFFPFHNRLVN 3
           P   F  RL N
Sbjct: 229 PLLSFQKRLTN 239

[150][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
           RepID=B7T3U2_9ROSI
          Length = 331

 Score =  252 bits (644), Expect = 1e-65
 Identities = 128/183 (69%), Positives = 149/183 (81%), Gaps = 5/183 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+Y+ IAGI+ES++EILMNL EIVLRSNLYGTR+A ICV+GP  +TA+DIILPP+  I
Sbjct: 70  IPHEYTTIAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSTAI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFE----DRSYPIDAVFMPVENANHS 225
           +DNTQHI TLTEPID C+ LKIER RGYS+K+    +    D +YPIDAVFMPV N NHS
Sbjct: 130 VDNTQHIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAVFMPVRNVNHS 189

Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL-ENNQH 48
           IHSY  G+   E+LFLEIWTNGSLTPKEAL +ASR LINL +PFLH EEE FYL ENNQ+
Sbjct: 190 IHSYERGS--HEMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEENFYLVENNQN 247

Query: 47  QVT 39
           Q T
Sbjct: 248 QDT 250

[151][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
           RepID=B7T3M1_9ROSI
          Length = 329

 Score =  248 bits (632), Expect = 3e-64
 Identities = 120/181 (66%), Positives = 148/181 (81%), Gaps = 3/181 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+Y+ + GIQES++EILMNL EIVLRS+LYGTR+A ICV+GP  +TA+DIILP +  I
Sbjct: 70  IPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTAQDIILPTSATI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHSI 222
           +DNTQHI T+TEPID C+ L+IERNRGY ++   ++N  +DR YPID+VFMPV+N NHSI
Sbjct: 130 VDNTQHIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVFMPVKNVNHSI 189

Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
           HSY NG     +LFLEIWTNGSLTPKEAL +ASR L NLFIPFLH EE+ F+ ENNQ++ 
Sbjct: 190 HSYENG--IHAMLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQNFHFENNQNEH 247

Query: 41  T 39
           T
Sbjct: 248 T 248

[152][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
           RepID=B7T3F0_9ROSI
          Length = 329

 Score =  246 bits (628), Expect = 9e-64
 Identities = 122/181 (67%), Positives = 146/181 (80%), Gaps = 3/181 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           IPH+Y+ + GIQES++EILMNL EIVLRS+LYGTR+A ICV+GP  +T++DIILP    I
Sbjct: 70  IPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTSQDIILPTFATI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHSI 222
           +DNTQHI TLTEPID C+ L+IERNRGY ++   +SN  +DR YPIDAVFMPV+N NHSI
Sbjct: 130 VDNTQHIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVFMPVKNVNHSI 189

Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
           HSY NG     +LFLEIWTNGSLTPKEAL  ASR LINLFIPFLH EE+  + ENNQ++ 
Sbjct: 190 HSYENG--IHAMLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQNCHFENNQNEH 247

Query: 41  T 39
           T
Sbjct: 248 T 248

[153][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
           RepID=UPI0000E123FA
          Length = 351

 Score =  242 bits (617), Expect = 2e-62
 Identities = 118/167 (70%), Positives = 139/167 (83%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP+VE
Sbjct: 178 SVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVE 237

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D  Q IA LTEP D  IEL+I+R+RGY  ++  N +D SYPIDAV MPV N N+SI +
Sbjct: 238 IVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFA 297

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
            GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 298 CGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEE 344

[154][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
           RepID=C3W0T7_CEDDE
          Length = 335

 Score =  238 bits (606), Expect = 3e-61
 Identities = 118/191 (61%), Positives = 149/191 (78%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGVREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I+L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNRKGSNM 248

Query: 35  PFFPFHNRLVN 3
           P FP  + L +
Sbjct: 249 PPFPLSHVLTD 259

[155][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
           RepID=RPOA_CYCTA
          Length = 340

 Score =  238 bits (606), Expect = 3e-61
 Identities = 117/186 (62%), Positives = 146/186 (78%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS I GI+ESVH+IL+NL EIVLRS+ YGTR A IC+ GP  +TA+DIILPP+V I
Sbjct: 70  VTHEYSAIIGIEESVHDILINLKEIVLRSDPYGTREASICIVGPRNVTAQDIILPPSVRI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           ID TQHIA+LT+ I   I L IE++RGY ++   N++D  +PIDAVFMPV NAN+SIHSY
Sbjct: 130 IDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVRNANYSIHSY 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
           GNGN+ QEILFLEIWTNGSL P+EAL++ASRNLI+LFIPFL  EE+     +NQ+   +P
Sbjct: 190 GNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDGMDNQNGSNMP 249

Query: 32  FFPFHN 15
            F F N
Sbjct: 250 SFSFSN 255

[156][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
           RepID=C3W219_PINMO
          Length = 335

 Score =  237 bits (604), Expect = 5e-61
 Identities = 119/191 (62%), Positives = 148/191 (77%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +  SNN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[157][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
          Length = 335

 Score =  236 bits (602), Expect = 9e-61
 Identities = 119/191 (62%), Positives = 148/191 (77%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +  SNN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[158][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
          Length = 335

 Score =  236 bits (602), Expect = 9e-61
 Identities = 119/191 (62%), Positives = 148/191 (77%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +  SNN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[159][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
           RepID=C3VYB7_9CONI
          Length = 335

 Score =  236 bits (602), Expect = 9e-61
 Identities = 119/191 (62%), Positives = 148/191 (77%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +  SNN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[160][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
           RepID=C3TSB3_PINKR
          Length = 335

 Score =  236 bits (602), Expect = 9e-61
 Identities = 119/191 (62%), Positives = 148/191 (77%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPKNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +  SNN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[161][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
           RepID=RPOA_PINKO
          Length = 335

 Score =  236 bits (602), Expect = 9e-61
 Identities = 119/191 (62%), Positives = 148/191 (77%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +  SNN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[162][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
           RepID=C1IXH8_PICSI
          Length = 336

 Score =  236 bits (601), Expect = 1e-60
 Identities = 118/191 (61%), Positives = 146/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A IC+ GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIRGASICIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL +ASR LI LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNIDGMNNRKGSNM 248

Query: 35  PFFPFHNRLVN 3
           P FP  + L +
Sbjct: 249 PPFPLSHVLTD 259

[163][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
           RepID=C3W1N1_LAROX
          Length = 335

 Score =  234 bits (598), Expect = 3e-60
 Identities = 117/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSNM 248

Query: 35  PFFPFHNRLVN 3
           P FP  + L +
Sbjct: 249 PPFPLSHVLTD 259

[164][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
           RepID=C1IXV8_PINGE
          Length = 335

 Score =  234 bits (598), Expect = 3e-60
 Identities = 118/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +  SNN++D  +PIDAVFMPV + N+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDVNYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[165][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
           RepID=C3VZR7_9CONI
          Length = 335

 Score =  234 bits (596), Expect = 5e-60
 Identities = 118/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +  SNN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     N +    +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[166][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
           RepID=C3VZJ9_9CONI
          Length = 335

 Score =  234 bits (596), Expect = 5e-60
 Identities = 118/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +  SNN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     N +    +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[167][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
           RepID=C3VXZ8_PINRZ
          Length = 335

 Score =  234 bits (596), Expect = 5e-60
 Identities = 118/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +  SNN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     N +    +
Sbjct: 189 YGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[168][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
           chihuahuana RepID=C3W150_PINLE
          Length = 335

 Score =  233 bits (594), Expect = 8e-60
 Identities = 117/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHLLTD 259

[169][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
           RepID=C3W0G5_PINBN
          Length = 335

 Score =  233 bits (594), Expect = 8e-60
 Identities = 117/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHLLTD 259

[170][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
           RepID=C3VZ24_PINTO
          Length = 335

 Score =  233 bits (594), Expect = 8e-60
 Identities = 117/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHLLTD 259

[171][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
          Length = 335

 Score =  233 bits (594), Expect = 8e-60
 Identities = 117/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHLLTD 259

[172][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
           RepID=C1IXP0_PINCO
          Length = 335

 Score =  233 bits (594), Expect = 8e-60
 Identities = 117/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHLLTD 259

[173][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
           RepID=B7ZIR8_KETDA
          Length = 336

 Score =  232 bits (591), Expect = 2e-59
 Identities = 115/185 (62%), Positives = 144/185 (77%), Gaps = 1/185 (0%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQHQVT 39
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+ FIPFLH EE+    + N +    
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNIDGINNRKGSSN 248

Query: 38  LPFFP 24
           +P FP
Sbjct: 249 MPPFP 253

[174][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
           RepID=C3W2L0_PINPS
          Length = 335

 Score =  231 bits (589), Expect = 3e-59
 Identities = 116/191 (60%), Positives = 146/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[175][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
          Length = 336

 Score =  231 bits (589), Expect = 3e-59
 Identities = 115/185 (62%), Positives = 144/185 (77%), Gaps = 1/185 (0%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQHQVT 39
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+    + N +    
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSSN 248

Query: 38  LPFFP 24
           +P FP
Sbjct: 249 MPPFP 253

[176][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
           RepID=C3VXT2_PINRE
          Length = 335

 Score =  231 bits (589), Expect = 3e-59
 Identities = 116/191 (60%), Positives = 146/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[177][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
           RepID=RPOA_PINTH
          Length = 335

 Score =  231 bits (589), Expect = 3e-59
 Identities = 116/191 (60%), Positives = 146/191 (76%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[178][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
           RepID=C3W0M8_9CONI
          Length = 335

 Score =  229 bits (585), Expect = 9e-59
 Identities = 115/191 (60%), Positives = 145/191 (75%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV + N+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDVNYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[179][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
           RepID=C3W1V8_9CONI
          Length = 335

 Score =  229 bits (584), Expect = 1e-58
 Identities = 115/191 (60%), Positives = 145/191 (75%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
            ID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 TIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHVLTD 259

[180][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
          Length = 335

 Score =  228 bits (582), Expect = 2e-58
 Identities = 115/191 (60%), Positives = 145/191 (75%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS I GI+ESVH+ILMNL  IVLRS+ YG   A I + GP  +TA+DIILPP+V+
Sbjct: 69  NIKHEYSAIIGIEESVHDILMNLKXIVLRSDSYGIXEASIYIVGPRNVTAQDIILPPSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA LT+ I   I L+IE+NRGY +   NN++D  +PIDAVFMPV +AN+SIHS
Sbjct: 129 IIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+     NN+    +
Sbjct: 189 YGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNM 248

Query: 35  PFFPFHNRLVN 3
             FP  + L +
Sbjct: 249 LPFPLSHLLTD 259

[181][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
           lepidozioides RepID=RPOA_TAKLE
          Length = 341

 Score =  221 bits (564), Expect = 2e-56
 Identities = 108/183 (59%), Positives = 144/183 (78%), Gaps = 1/183 (0%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS I GIQESVH++L+NL EIVLRS+ Y T+ A I + GP  +TA+DIILPP+V+I
Sbjct: 70  VTHEYSTILGIQESVHDVLINLGEIVLRSDSYETQKAFISILGPKKVTAQDIILPPSVKI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           ID TQ+IAT+T+ I L IELKIE++ GY ++      D ++P+DAVFMP+ N N+S+HS+
Sbjct: 130 IDTTQYIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPIRNVNYSVHSF 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQHQVTL 36
            NGNE QEILFLEIWTNGS+TPKEAL++ASR+LINLFIPFLH E++ F Y   N ++  +
Sbjct: 190 ENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKEFIYGLKNTYESNM 249

Query: 35  PFF 27
            +F
Sbjct: 250 SYF 252

[182][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
           RepID=Q5EFY8_9BRYO
          Length = 340

 Score =  218 bits (554), Expect = 3e-55
 Identities = 108/184 (58%), Positives = 143/184 (77%), Gaps = 2/184 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS IAGIQESVH+IL+NL EIVLRSN Y T+ A I + GP  +TA+DIILPP+V+I
Sbjct: 70  VTHEYSTIAGIQESVHDILINLKEIVLRSNSYETQKAFISILGPKKVTAQDIILPPSVKI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           ID TQ+IATLT+ I L IEL+IE++ GY ++ S    D  +PIDA+FMP+ NAN+S+HS+
Sbjct: 130 IDTTQYIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPIRNANYSVHSF 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQVT 39
            + N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++     LEN      
Sbjct: 190 EHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEIINGLENKYESNN 249

Query: 38  LPFF 27
           + +F
Sbjct: 250 MSYF 253

[183][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
           RepID=Q5EFY2_9BRYO
          Length = 338

 Score =  212 bits (539), Expect = 2e-53
 Identities = 103/166 (62%), Positives = 136/166 (81%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS I GIQESVH+IL+NL EIVL+SN   T+ A I + GP  ITA+DIILPP+V+I
Sbjct: 70  VTHEYSTIVGIQESVHDILINLKEIVLKSNSSETQKAFISILGPKKITAQDIILPPSVKI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           ID TQ+IAT+T+PI L IEL+IE++ GY ++ S    D  +PIDA+FMP+ NAN+S+HS+
Sbjct: 130 IDTTQYIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPIRNANYSVHSF 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
            N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 190 ENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKK 235

[184][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
           RepID=Q5EFY4_9BRYO
          Length = 340

 Score =  209 bits (531), Expect = 2e-52
 Identities = 100/166 (60%), Positives = 134/166 (80%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS I GIQES H+IL+NL EIVL+SN Y T+ A + + GP  ITA+DIILPP+V+I
Sbjct: 70  VTHEYSTIVGIQESAHDILINLKEIVLKSNSYETQKAFLSILGPKKITAQDIILPPSVKI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           ID TQ+IAT+T+PI L IEL+I+++ GY +  S    D  + IDA+FMP+ NAN+S+HS+
Sbjct: 130 IDTTQYIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPIRNANYSVHSF 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
            N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 190 ENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKK 235

[185][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
           evecta RepID=RPOA_ANGEV
          Length = 341

 Score =  206 bits (523), Expect = 1e-51
 Identities = 97/175 (55%), Positives = 137/175 (78%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+ H+YS I GI+ES+++IL+N  EIVLRS+ Y T+ A I + GP  ITA DI+LPP+V+
Sbjct: 69  NVIHEYSTIIGIEESINDILINFKEIVLRSDSYETQKAYISITGPKDITAEDILLPPSVQ 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
            ID++QHIAT+T+ I L IE++I+++RGY ++ S   +   + IDAVFMP+  AN+S+HS
Sbjct: 129 AIDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPIRKANYSVHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
           +GN  + QEILF+EIWT+GSLTPKEAL++ASRNLI+LF+PFLH EEE    + ++
Sbjct: 189 FGNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEIISDRDE 243

[186][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
           RepID=Q4FGA3_GINBI
          Length = 337

 Score =  205 bits (521), Expect = 2e-51
 Identities = 106/185 (57%), Positives = 132/185 (71%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+ H+YS I GI+ESVH+I +NL  IVL+S+ YG R A I   GP  +TA+DIILPP+V 
Sbjct: 69  NMTHEYSAIMGIEESVHDISINLRGIVLQSDPYGIREASIYSVGPRDVTAQDIILPPSVR 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID TQHIA+L E I   I  +I ++RGY ++  NN  D  +  DAV MPV NAN+SIHS
Sbjct: 129 IIDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPVRNANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           YGNGNE QEILF EIWTNGSL P EAL++ASRNLI+LFIPF+  EE+     +N +   +
Sbjct: 189 YGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNIDGIDNWNGYNM 248

Query: 35  PFFPF 21
             FPF
Sbjct: 249 SLFPF 253

[187][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
           RepID=Q5EFZ1_9BRYO
          Length = 340

 Score =  202 bits (515), Expect = 1e-50
 Identities = 102/184 (55%), Positives = 136/184 (73%), Gaps = 2/184 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS IAGIQESVH+I +N  EIVL SN   T+ A I + GP  ITA+DIILPP+V+I
Sbjct: 70  VTHEYSTIAGIQESVHDISINSKEIVLESNSSETQKAFISILGPKKITAQDIILPPSVKI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           ID  Q+IATLT+ I L IEL+IE++ GY ++ SN   +  + IDA+FMP+ NAN+S+HS+
Sbjct: 130 IDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPIRNANYSVHSF 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQVT 39
            N N+ QE+LF+EIWTNGS+TPK+AL++ASR+LI+LFIPFLH E       LEN      
Sbjct: 190 ENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREIINELENEYKLSN 249

Query: 38  LPFF 27
           + +F
Sbjct: 250 ISYF 253

[188][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
           RepID=Q5EG69_9BRYO
          Length = 338

 Score =  202 bits (514), Expect = 1e-50
 Identities = 105/191 (54%), Positives = 139/191 (72%), Gaps = 3/191 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRS--NLYGTRNALICVQGPGYITARDIILPPAV 399
           + H+YS I GIQESV +IL+NL EIVL+S  N   T+ A + + GP  +TARDII PP+V
Sbjct: 71  VTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVTARDIIFPPSV 130

Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
           E+ID TQ+IATLT+ I L IELKIE++ GY  + S    D  + +DAVF P+ NAN+S+H
Sbjct: 131 EVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVH 190

Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EETFYLENNQHQV 42
           S+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E EE  + +N  + +
Sbjct: 191 SFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHDKNESNTL 250

Query: 41  TLPFFPFHNRL 9
                P  N++
Sbjct: 251 HFSSSPSENKM 261

[189][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
           RepID=B1VKC7_CRYJA
          Length = 342

 Score =  202 bits (514), Expect = 1e-50
 Identities = 105/194 (54%), Positives = 133/194 (68%), Gaps = 10/194 (5%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI ++YS I GI+ES+HEILMNL EIVLRS+ YG R   I V GP  +TA+DI+LPP+V 
Sbjct: 69  NISNEYSVIIGIEESIHEILMNLKEIVLRSDAYGIREGSIHVVGPKKVTAQDIMLPPSVR 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----------YPIDAVFMP 246
           IID TQHIA + + I L I L+IE+ RGY ++  NN+  +           +PIDA F P
Sbjct: 129 IIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVFPIDAAFAP 188

Query: 245 VENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
           V+N N+SIHSY + NE QEILFLEIWTNG L PKEAL++ASRNLI+ F+PFL+ +EE   
Sbjct: 189 VQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPFLNAKEENSD 248

Query: 65  LENNQHQVTLPFFP 24
             N+      P  P
Sbjct: 249 GTNSLSDDITPSLP 262

[190][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
           girgensohnii RepID=Q60F85_9BRYO
          Length = 341

 Score =  200 bits (509), Expect = 6e-50
 Identities = 105/185 (56%), Positives = 135/185 (72%), Gaps = 4/185 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRS--NLYGTRNALICVQGPGYITARDIILPPAV 399
           + H+YS I GIQESV +IL+NL EIVL+S  N   T+ A + + GP  +TARDI+ PP+V
Sbjct: 71  VTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVTARDIVFPPSV 130

Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
           E+ID TQ+IATLT+ I L IELKIE++ GY  + S    D  + +DAVF P+ NAN+S+H
Sbjct: 131 EVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVH 190

Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQ 45
           S+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E+E     L N    
Sbjct: 191 SFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHGLGNKNES 250

Query: 44  VTLPF 30
            TL F
Sbjct: 251 NTLHF 255

[191][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
           formosae RepID=RPOA_ANTFO
          Length = 340

 Score =  200 bits (509), Expect = 6e-50
 Identities = 94/166 (56%), Positives = 129/166 (77%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS I GIQESVH+IL+NL EIVL+SN Y T+ A I + GP  +TA DI+LP +VE+
Sbjct: 70  VTHEYSTIMGIQESVHDILINLKEIVLKSNSYKTQEASISILGPKRVTAEDIVLPSSVEV 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           ID TQHIAT+T+ +   I+L I ++RGY ++    +ED ++ ++A F P+ NAN+S+HS+
Sbjct: 130 IDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNANYSVHSF 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
            N  EKQEILF+E+WTNGSLTPKEAL +AS++LINLFIP LH ++E
Sbjct: 190 ENEKEKQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKE 235

[192][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
           quadrifolia RepID=RPOA_MARQU
          Length = 341

 Score =  195 bits (496), Expect = 2e-48
 Identities = 88/166 (53%), Positives = 128/166 (77%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS +AGIQE++H+IL+NL EIVLRS+  G + A++ V GP  +TA DI LPP+V++
Sbjct: 70  VAHEYSTVAGIQETIHDILVNLKEIVLRSDSDGNQKAILSVTGPKRVTAGDISLPPSVKV 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           ID++Q+I T+T+PI + IEL IE + GY ++  N + D  +P+DAVFMPV N N+S+H +
Sbjct: 130 IDDSQYIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNVNYSVHPF 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
           G+G E +EILF+E+WTNGSLTP EA+ +AS++ I+L  PFLH + E
Sbjct: 190 GSGKEMREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHE 235

[193][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
           RepID=B0YPQ7_ANEMR
          Length = 342

 Score =  188 bits (478), Expect = 2e-46
 Identities = 90/162 (55%), Positives = 125/162 (77%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H+YS I GI+ES+H+IL+NL EI+LRS+    + A ICV GP  +TARDI     + +
Sbjct: 71  IKHEYSAINGIRESIHDILINLKEIILRSDSPEPQKAYICVSGPSEVTARDIQGSSLIHV 130

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           IDNTQ++AT+T  I L IEL IE++RGY ++ S  + +  +PIDAVFMP+ NAN+S+HS+
Sbjct: 131 IDNTQYVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRNANYSVHSF 190

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
           G+  + +EIL LEIWTNGSLTP++AL++ASRNLI+LFIP ++
Sbjct: 191 GSREKTKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMN 232

[194][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
           RepID=RPOA_PSINU
          Length = 340

 Score =  186 bits (471), Expect = 1e-45
 Identities = 93/184 (50%), Positives = 133/184 (72%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+ H+YS + GI+ES+H+IL+NL EIVL+S+ Y T+ A I + GP  +TA DI+LP +V+
Sbjct: 69  NVVHEYSTLVGIKESIHDILINLKEIVLQSDSYETQKASISILGPRDVTAGDILLPTSVK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID +QHIAT+T  I L +EL+IER+ GY        +   + IDA+F P+ NAN+SIHS
Sbjct: 129 IIDASQHIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPIRNANYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
           + + N+ +EILFLE+WTNGSLTP  AL +ASR+LI+LFI FL++E+E    E   +++ +
Sbjct: 189 FESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIKEIENNELNI 248

Query: 35  PFFP 24
             FP
Sbjct: 249 KNFP 252

[195][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
           RepID=A6BM49_BRANA
          Length = 326

 Score =  183 bits (465), Expect = 7e-45
 Identities = 89/166 (53%), Positives = 122/166 (73%), Gaps = 2/166 (1%)
 Frame = -3

Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
           HDYS ++GI+ESVH+IL+NL EIVL+S LYG   A IC  GP  +TA+DIILP +++IID
Sbjct: 73  HDYSTMSGIKESVHDILLNLKEIVLKSELYGIHKASICTVGPRNVTAQDIILPSSIKIID 132

Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
            TQHIA+LT+ +   + L IERN+GY++  + S   ++  +PIDA  MPV N N SIHSY
Sbjct: 133 GTQHIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPCMPVRNVNFSIHSY 192

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
            + N+ +E+L  EIWTNG LTP+EA ++A   LI+L +P LH+EE+
Sbjct: 193 KSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED 238

[196][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
           polymorpha RepID=RPOA_MARPO
          Length = 340

 Score =  183 bits (465), Expect = 7e-45
 Identities = 93/188 (49%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS I G+QES+H+IL+NL EIVL+S  +  + A I V GP  ITA+DI  P  ++I
Sbjct: 70  VKHEYSTIIGLQESIHDILINLKEIVLKSESFEPQKAYISVLGPKKITAQDIKGPSCIKI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           +   Q+IATL + I L IEL IE++RGY ++    +++  +P+DAVFMP+ NAN+S+HS+
Sbjct: 130 MIIAQYIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNANYSVHSF 189

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYLENNQHQVT 39
            +  + +EILFLEIWT+GSLTPKEAL++ASRNLI+LFIP ++ E  E+ F +E   ++  
Sbjct: 190 ESEKKIKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNFGIEKT-NESN 248

Query: 38  LPFFPFHN 15
           + +FPF +
Sbjct: 249 MSYFPFQS 256

[197][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
           RepID=C5HY86_9FILI
          Length = 338

 Score =  182 bits (461), Expect = 2e-44
 Identities = 85/164 (51%), Positives = 122/164 (74%)
 Frame = -3

Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
           H+YS I GIQE++H+I +NL E V RS+   ++ A + V GP  +TA D  LPP+V+IID
Sbjct: 72  HEYSTITGIQETIHDISVNLKETVPRSDSNDSKEAFLSVTGPKRVTAGDTSLPPSVKIID 131

Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
           ++Q+I T+T+PI + IE +IE++ GY ++  N + D  +P+DAV MPV N N+S+H +G+
Sbjct: 132 DSQYIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRNVNYSVHPFGS 191

Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
           G E +EI F+EIWTNGS TP EAL +AS+NLI+L IPFLH++ E
Sbjct: 192 GREMREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHE 235

[198][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
           RepID=B7ZII6_EPHEU
          Length = 258

 Score =  181 bits (460), Expect = 3e-44
 Identities = 90/175 (51%), Positives = 127/175 (72%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS+I GI+ESVH+ILMNL +IVLRS LYG   A IC  GP  +TA+DIILP +++
Sbjct: 70  NILHEYSSIIGIKESVHDILMNLKQIVLRSELYGIHEASICTVGPKNVTAQDIILPSSIQ 129

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           IID+TQHIA+LT+ I   + LKIE+ + Y+++     +D  +PID V +PV+N N SIHS
Sbjct: 130 IIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIHS 189

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
           Y + +  QE+L  EIWTNG LTP+E +++A  +L++L IP L VE+    ++N+Q
Sbjct: 190 YKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQN---IKNSQ 241

[199][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
           capillus-veneris RepID=RPOA_ADICA
          Length = 345

 Score =  177 bits (448), Expect = 7e-43
 Identities = 91/185 (49%), Positives = 125/185 (67%), Gaps = 2/185 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLY-GTRNALICVQGPGYITARDIILPPAVE 396
           + H+YS I G+QE++H++L+NL EIVLR +     + A + V GP  +TA D+ LPP VE
Sbjct: 70  VVHEYSTITGLQETIHDVLVNLKEIVLRGDSKEDIQEAFLSVTGPKEVTAGDLSLPPGVE 129

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
            IDN+Q+IAT+T+PI L IEL+IE++ GY ++         +PIDAVFMPV N N+SIH 
Sbjct: 130 AIDNSQYIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRNVNYSIHL 189

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EETFYLENNQHQVT 39
           +G+G   QEILF+EIWTNGSLTP EAL +AS  L++L   FL+V   +    EN +  + 
Sbjct: 190 FGSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDSLD 249

Query: 38  LPFFP 24
           L   P
Sbjct: 250 LTKSP 254

[200][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
           Tax=Physcomitrella patens RepID=RPOA_PHYPA
          Length = 450

 Score =  170 bits (430), Expect = 8e-41
 Identities = 84/168 (50%), Positives = 122/168 (72%), Gaps = 1/168 (0%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N+  +Y+ + G++E+  +IL+NL E+V+RS+    + A+I   GPG +TA DI+LPP++E
Sbjct: 181 NVKSEYAAMKGVEETPMDILVNLKELVIRSDSDEPQKAIISAIGPGPVTAGDIVLPPSLE 240

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           + D TQHIA LT+ + L IEL +E+  GY +       D  + ID+VFMPV NAN+S+HS
Sbjct: 241 VTDPTQHIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANYSVHS 300

Query: 215 Y-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
           Y    +  QEILFLEIWTNGS+TP+EALH+A+R LI+LF+PFLH +++
Sbjct: 301 YESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKK 348

[201][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
           RepID=RPOA_HUPLU
          Length = 336

 Score =  169 bits (429), Expect = 1e-40
 Identities = 83/169 (49%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+YS + GIQESVH+IL+N  EIVL+S     + A I + GP  +TA+DI LP +VE
Sbjct: 72  NITHEYSTMDGIQESVHDILINSKEIVLKSKSSEAQKAFISIVGPRRVTAQDIELPTSVE 131

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           +ID  QHIAT+T+ + L IELKIE++ GY  +    ++D ++ +DAVF P+ + N+SIH 
Sbjct: 132 VIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSVNYSIHC 191

Query: 215 YGNGNEK--QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
           + + ++   +E+L  EIW+NGS+TP+EA+++ASR+ INLF+PFL  E+E
Sbjct: 192 FESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKE 240

[202][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
           RepID=RPOA_CHAVU
          Length = 358

 Score =  160 bits (405), Expect = 6e-38
 Identities = 78/160 (48%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           NI H+Y  + G++ES+ +IL+NL EIV +     T+   I V+GP  ITA DI + P +E
Sbjct: 66  NIKHEYCTLTGVRESIQDILLNLKEIVFKGVCDKTQKGFIFVKGPKKITASDIQIEPCIE 125

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I+D+ Q IA LTEPID  +EL IE++ G+ L+ +      S+ IDA+FMP+ N N+SIH 
Sbjct: 126 ILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIRNVNYSIHP 185

Query: 215 YGN-GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFI 99
               G+ K E+L LEIWTNGS+TPKEA HQAS  ++N+F+
Sbjct: 186 VEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFL 225

[203][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
           RepID=C7B2H8_9TRAC
          Length = 247

 Score =  157 bits (396), Expect = 7e-37
 Identities = 83/165 (50%), Positives = 116/165 (70%), Gaps = 3/165 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGT-RNALICVQGPGYITARDIILPPAVE 396
           I H+Y+ IAG++ESVH+ILMNL EIVL++N +   + A I + GP  +TA+DI+LPP+V 
Sbjct: 70  INHEYTAIAGVRESVHDILMNLKEIVLKTNPFSAAQEAHIPIVGPRKVTAQDIVLPPSVG 129

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
            +D TQHIAT+T  I   I L++ER  G+  +    ++  S P DAVFMP+ +AN+SIH 
Sbjct: 130 TMDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFMPIRHANYSIHR 189

Query: 215 YGN--GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
            G+  G   +E+L LE  T+GS TP+EA+++ASRNL NLF PF H
Sbjct: 190 LGSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234

[204][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
           RepID=RPOA_SPIMX
          Length = 344

 Score =  154 bits (390), Expect = 4e-36
 Identities = 75/166 (45%), Positives = 113/166 (68%)
 Frame = -3

Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
           H+YS + GIQES+H+IL+NL ++++++ +   +  LI + GP  +TA DI L   + I +
Sbjct: 74  HEYSTLEGIQESIHDILLNLKQVIIKNKICEFQKCLISIIGPKKVTAADIELSQNITISN 133

Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
              HIAT+T+PI   +EL I + RGY ++  N+ +D  +P+DA+F PV N N SIH   N
Sbjct: 134 PYHHIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNFSIH---N 190

Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
             E+QE L LEIWTNG++TP +AL Q S NLI+LF+P   +E++T+
Sbjct: 191 LAEQQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDDTY 236

[205][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
           globosum RepID=RPOA_CHAGL
          Length = 334

 Score =  149 bits (377), Expect = 1e-34
 Identities = 68/165 (41%), Positives = 113/165 (68%)
 Frame = -3

Query: 575 NIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVE 396
           N  H+YS+++G+QESVH+IL+NL +I+L S+  G     + V GP  + A D+ LP  ++
Sbjct: 69  NAIHEYSSLSGVQESVHDILINLKKIILSSSFSGIFEGFLSVVGPKTVLASDLNLPSFIK 128

Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
           I++  Q+IAT+ +PI+  +++ I++ +GYSLK   + +   + +D VF+P+ + N+SIHS
Sbjct: 129 IVNPDQYIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSVNYSIHS 188

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
           + +    +E L +E+WTNGS+ PKEA+ +AS NL+NLF P +  E
Sbjct: 189 FEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQE 233

[206][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
           circumcarinatum RepID=RPOA_ZYGCR
          Length = 356

 Score =  149 bits (376), Expect = 1e-34
 Identities = 77/188 (40%), Positives = 117/188 (62%)
 Frame = -3

Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
           H+YS + GI+ES+H+IL+NL +IV +S+    +  ++   GPG +TA+ I LPP V+++D
Sbjct: 69  HEYSTLKGIRESIHDILLNLKDIVFKSDTLERQEGILLFNGPGIVTAQHIKLPPVVQVVD 128

Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
           NTQ+IA L  P  + I + +E  +  +   +       + +DA   PV N N+SIHS G 
Sbjct: 129 NTQYIARLEMPTSIEIHITLENTKTCTSLNTMPTTKGRFILDAALKPVRNMNYSIHSLGE 188

Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFF 27
           G+ +QE+L LE+WTNGSLTP+E + QAS+NL +L  P L V E  F  + N H+  + F 
Sbjct: 189 GDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKV-ERYFQAKQNIHKKRM-FT 246

Query: 26  PFHNRLVN 3
           P  +  +N
Sbjct: 247 PTQSENLN 254

[207][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
           RepID=B2Y1Z1_WELMI
          Length = 340

 Score =  143 bits (361), Expect = 8e-33
 Identities = 76/163 (46%), Positives = 106/163 (65%), Gaps = 5/163 (3%)
 Frame = -3

Query: 557 SNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQ 378
           S I GI+ESVH+I+MNL EIV R  L+G   A I   GP  +TA+DIILPP ++I+D TQ
Sbjct: 79  STILGIEESVHDIIMNLREIVFRCELHGIHKAYIYTVGPKNVTAQDIILPPFIQIVDGTQ 138

Query: 377 HIATLTEPIDLCIELKIERNRG---YSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
           HIA++T+PI L + LKIE+N G    S+     +  R  P +  +MPV +  ++++ Y +
Sbjct: 139 HIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPTEIFYMPVRSVTYNVYFYKD 198

Query: 206 GNEKQ--EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
             +    +IL  E+WTNG LTPKEAL++A   LI+L IP L V
Sbjct: 199 EYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLLDV 241

[208][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
           RepID=Q5EFY5_9BRYO
          Length = 195

 Score =  141 bits (355), Expect = 4e-32
 Identities = 71/125 (56%), Positives = 94/125 (75%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+YS I GIQESVH+IL+N  EIVL+SN Y T+ A I + GP  ITA+DIILPP+V+I
Sbjct: 70  VTHEYSTILGIQESVHDILINSKEIVLKSNSYETQKAFISILGPKKITAQDIILPPSVKI 129

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
           ID TQ+IATLT+ I L IE +IE++ GY ++ S    D  + +DAVFMP+ NAN+SIHS+
Sbjct: 130 IDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSKKSTDGLFFVDAVFMPIRNANYSIHSF 189

Query: 212 GNGNE 198
            N N+
Sbjct: 190 ENKNK 194

[209][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9SHY0_PHYPA
          Length = 438

 Score =  139 bits (349), Expect = 2e-31
 Identities = 68/164 (41%), Positives = 111/164 (67%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H+Y  + GIQE+V +IL+N+ ++ + SN +  + A I V GP  + A DI+ PP++ +
Sbjct: 171 IVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVV 230

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
            D +Q+IA +T  I   +E+++E++ GY +       +  + ID+VFMPV  AN+S+HS+
Sbjct: 231 PDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSF 290

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
              +  +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L  E
Sbjct: 291 EVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334

[210][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
           patens RepID=A9CP51_PHYPA
          Length = 525

 Score =  139 bits (349), Expect = 2e-31
 Identities = 68/164 (41%), Positives = 111/164 (67%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H+Y  + GIQE+V +IL+N+ ++ + SN +  + A I V GP  + A DI+ PP++ +
Sbjct: 258 IVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVV 317

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
            D +Q+IA +T  I   +E+++E++ GY +       +  + ID+VFMPV  AN+S+HS+
Sbjct: 318 PDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSF 377

Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
              +  +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L  E
Sbjct: 378 EVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421

[211][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
           JA-3-3Ab RepID=RPOA_SYNJA
          Length = 331

 Score =  131 bits (330), Expect = 3e-29
 Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H++S + G++E V EIL+N+ E+VLRSN   T+   +  QGPG +TA  + LP  VE+
Sbjct: 79  VTHEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQGPGEVTAEKLQLPSEVEV 138

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGY---SLKMSNNFEDRSYPIDAVFMPVENANHSI 222
           I+   HIATL E   L +E  I R RGY       S +       ID+VFMPV   N+++
Sbjct: 139 INPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDFLQIDSVFMPVRKVNYTV 198

Query: 221 HSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
            +   G   +++ L LEIWTNGSLTP+EAL QA+R L+ LF P   V  +T
Sbjct: 199 EAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSPLQEVSFDT 249

[212][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
           atmophyticus RepID=RPOA_CHLAT
          Length = 318

 Score =  130 bits (326), Expect = 9e-29
 Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H++S I G++E+V +IL+NL EIVL++    T+   + VQGP  + ARD+ LP ++E+
Sbjct: 66  VNHEFSTIHGVREAVLDILLNLKEIVLKTQSQETQRGHLSVQGPSTVLARDLQLPSSIEL 125

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENANHSI 222
           +D  Q+IAT++  + L +E  +E  +GY L   +    F+    PIDAVFMPV   N+++
Sbjct: 126 VDPDQYIATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFMPVTKVNYTV 185

Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
                G+  QE + +E+WTNGS+  ++A+  +   +INLF P  +V
Sbjct: 186 EENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSPLQNV 231

[213][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
           RepID=RPOA_GUITH
          Length = 318

 Score =  126 bits (316), Expect = 1e-27
 Identities = 75/182 (41%), Positives = 103/182 (56%), Gaps = 5/182 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H++S I GI+E V EIL+NL EIV    L  +    + VQGP  +TAR   LPP +++
Sbjct: 61  VSHEFSTINGIREDVLEILLNLKEIVFSGQLQESTIGRLTVQGPAIVTARSFELPPEIKL 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFED--RSYPIDAVFMPVENANHSI- 222
           ID  Q+IAT+     L +E KIE   GY +   +N  +      +D+VFMPV+  N  I 
Sbjct: 121 IDPEQYIATICGNNTLEMEFKIEVGSGYKIVEKDNSTEHFEFLQVDSVFMPVKKVNFRIE 180

Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV--EEETFYLENNQH 48
            + G  N   E L L+IWTNGS++ KEA+  A+ NLINLF P   +  E ET Y  N   
Sbjct: 181 ETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDGESETDYETNETS 240

Query: 47  QV 42
            +
Sbjct: 241 HI 242

[214][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7Q481_VITVI
          Length = 150

 Score =  125 bits (313), Expect = 3e-27
 Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 4/97 (4%)
 Frame = -3

Query: 401 VEIIDNTQH----IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENA 234
           +++I N  +    IA L +PIDLCI L+I+RN  YS+K  NNF+D SYPID VFM V+NA
Sbjct: 52  LDLISNNNYSTILIARLKKPIDLCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNA 111

Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQAS 123
           NH+IH YGN NE+QEILFL++WTN +LTPKEA H+AS
Sbjct: 112 NHNIHFYGNVNERQEILFLKLWTNKNLTPKEAFHEAS 148

[215][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
           JA-2-3B'a(2-13) RepID=RPOA_SYNJB
          Length = 335

 Score =  123 bits (309), Expect = 9e-27
 Identities = 73/171 (42%), Positives = 103/171 (60%), Gaps = 8/171 (4%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H++S + G++E V EIL+N+ E+VLRS+   T+   +  QGPG +TA  + LP  VE+
Sbjct: 81  VTHEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEV 140

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSYPIDAVFMPVENA 234
           I+   HIATL E   L +E  I R  GY       S  M+ +F      ID+VFMPV   
Sbjct: 141 INPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDF----LQIDSVFMPVRKV 196

Query: 233 NHSIHSYGNGN-EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
           N+++ +   G   +++ L LEIWTNGSLTP+EAL QA+R L+ LF P   V
Sbjct: 197 NYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAPLQEV 247

[216][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
           punctulatum RepID=RPOA_STAPU
          Length = 383

 Score =  122 bits (307), Expect = 1e-26
 Identities = 74/174 (42%), Positives = 99/174 (56%), Gaps = 12/174 (6%)
 Frame = -3

Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNL--------YGTRNALICVQGPGYITARDIIL 411
           H+YS + G++ESV EIL+NL +IV++           +    A I  QGPG +TA  I  
Sbjct: 72  HEYSTLDGVRESVDEILLNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGVVTAEHIKF 131

Query: 410 PPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENAN 231
           P ++  +D  Q IATL     LCIEL I +     L  +     + + IDA F PV+ AN
Sbjct: 132 PSSILAVDPDQSIATLLNETQLCIELFIRQGIAKQLTRTKK-NHQGFFIDANFTPVQKAN 190

Query: 230 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF----IPFLHVE 81
            SIHS G+    Q++L LEIWTN +LTP EAL+QA  +L+NLF     P LH E
Sbjct: 191 FSIHSVGDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244

[217][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
           8106 RepID=A0YJS0_9CYAN
          Length = 314

 Score =  122 bits (305), Expect = 3e-26
 Identities = 69/171 (40%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I G++E V EIL+NL EIVL S     +   + VQGP  +TA    LP  VE+
Sbjct: 61  VNHEFATIPGVREDVLEILLNLKEIVLNSYSNQRQIGRLLVQGPATVTAGHFDLPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           +D  Q+IATL+    L +E ++E+  GY     N  E  +     IDAVFMPV   N+++
Sbjct: 121 VDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPVRKVNYTV 180

Query: 221 H-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
             +   G+ +++ L L+IWTNGSLTP+EAL QA+  L++LF+P   +  E+
Sbjct: 181 EDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLKDITLES 231

[218][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
           sp. PCC 7002 RepID=B1XJI4_SYNP2
          Length = 313

 Score =  120 bits (300), Expect = 1e-25
 Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 4/163 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I G++E   EI++N+ EI+L+S  +  +   +   GPG +TA    LP  VE+
Sbjct: 61  VNHEFATIPGVREDALEIILNMKEIILKSYTHQPQIGRLTATGPGQVTAAQFDLPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           +D TQ+IATL +   L +E +IE+ + Y     N  E  +     IDAVFMPV   N+S+
Sbjct: 121 VDPTQYIATLADGAKLEMEFRIEKGKSYRAVQRNRDEATALDFLQIDAVFMPVTKVNYSV 180

Query: 221 HS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
            S +  G+  ++ L LEIWTNGS+ P+EAL QA+   + LF P
Sbjct: 181 DSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNP 223

[219][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
           paradoxa RepID=RPOA_CYAPA
          Length = 315

 Score =  120 bits (300), Expect = 1e-25
 Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 4/170 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H++ +I G++E V E+L+NL  IVL+S     +   + +QG   +T  +  LP  VEI
Sbjct: 61  VNHEFCSIPGVKEDVLELLLNLKNIVLKSYTNEPQIGRLKIQGACKVTTANFELPSEVEI 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENANHSI 222
           I  TQ++AT+ E   L +E KIE+ RGY +   K + N  D   PIDA+FMPV   N+ +
Sbjct: 121 IHGTQYVATVAENAILEMEFKIEKGRGYKIIDKKQTENSID-FLPIDAIFMPVRKVNYMV 179

Query: 221 HS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
              +   +E +E L LEIW NGS+TP++++ QA+  L+NLF PF  +  E
Sbjct: 180 EEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPFKKINFE 229

[220][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
           caldarium RepID=RPOA_CYACA
          Length = 310

 Score =  120 bits (300), Expect = 1e-25
 Identities = 63/163 (38%), Positives = 101/163 (61%), Gaps = 4/163 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H++S + G++E V EIL+NL  IVL+ N+   +   + VQGP  +T+  I  P  + +
Sbjct: 65  INHEFSTVKGVKEDVLEILLNLKNIVLKGNVLKNQIGRLKVQGPAIVTSGQIEFPLDITV 124

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENANHS 225
           +D  Q+IAT++    L +ELK+E++ GY  K+   F  +S     PID++FMPV+  N+ 
Sbjct: 125 VDPCQYIATISGNDYLEMELKVEKSSGY--KLVETFSKKSPLDFLPIDSIFMPVKKVNYY 182

Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
           +    +     E L LE+WTNGSL+P+++++ AS NL+ LF P
Sbjct: 183 VEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225

[221][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
           chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
          Length = 315

 Score =  119 bits (297), Expect = 2e-25
 Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 4/168 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ IAGI+E V EIL+N+ E+VL+S   G     + + GP  + +    LP  VE 
Sbjct: 61  VNHEFATIAGIREDVLEILLNMKEVVLKSYTPGPHIGRVMITGPSTVRSAQFDLPSDVEF 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           +D  Q+IATL +   L +E +IER +GY        E  S     +DAVFMPV   N+S+
Sbjct: 121 VDPGQYIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVFMPVTKVNYSV 180

Query: 221 H-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
             +  +G+ +++ L L++WTNGS++P+EAL QA+  L++LF P   +E
Sbjct: 181 EDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228

[222][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
           NIES-843 RepID=B0JY38_MICAN
          Length = 313

 Score =  118 bits (296), Expect = 3e-25
 Identities = 61/163 (37%), Positives = 96/163 (58%), Gaps = 4/163 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ + G++E V E+++N+ EI+L+S    T+   +   GP  + A    LP  VEI
Sbjct: 61  VNHEFATVQGVREDVMELMLNMKEIILKSYTNQTQIGRLVATGPATVVAAQFDLPSEVEI 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           +D  Q++ATL E   L +E ++E+ +GY     +  E  S     ID++FMPV   N+S+
Sbjct: 121 VDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPVTKVNYSV 180

Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
                   + ++ L LEIWTNGS+ PKEAL QA+  L+NLF P
Sbjct: 181 EDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223

[223][TOP]
>UniRef100_A0T0K0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaeodactylum
           tricornutum RepID=RPOA_PHATR
          Length = 311

 Score =  118 bits (296), Expect = 3e-25
 Identities = 70/161 (43%), Positives = 99/161 (61%), Gaps = 4/161 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H++S I G++E + EIL+NL  I+  S +  T+   + VQGP  +TA  I LPP VEI
Sbjct: 61  ITHEFSTIPGVREDILEILLNLKGIICTSQIQDTQFGHLKVQGPSVVTADLIQLPPGVEI 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSY-PIDAVFMPVENANHSI 222
           I+   +IAT++    L IE K E   GY L  S NF  ED +Y  +D +FMPV+  +  I
Sbjct: 121 INPNHYIATISTSNILEIEFKFEYGSGYHL-ASQNFVEEDENYLQLDTIFMPVQKVDFKI 179

Query: 221 HS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
            + Y   N   E LFL+IWTNGS++P +AL  A++ +I+LF
Sbjct: 180 ENIYDATNNISERLFLDIWTNGSISPNDALESAAQVIIDLF 220

[224][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
           marina MBIC11017 RepID=B0C430_ACAM1
          Length = 313

 Score =  118 bits (295), Expect = 4e-25
 Identities = 67/188 (35%), Positives = 111/188 (59%), Gaps = 9/188 (4%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I G++E V +IL+N+ ++VLRS+    +   + VQGP  +T  D  LP  VEI
Sbjct: 61  VNHEFATIPGVREDVLDILLNMKQVVLRSHTNDPQIGRLFVQGPATVTTDDFELPTEVEI 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           ++ TQ++ATL+    L +E +IE+ +GY     N  E  +     IDA++MPV   N+ +
Sbjct: 121 VNPTQYVATLSSDATLEMEFRIEQGKGYHAVGKNRDEAAALDFLEIDAIYMPVRRVNYEV 180

Query: 221 HSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIP-----FLHVEEETFYLE 60
                G   +++ L L+IWTNG+LTP+E+L QA+  L++LF P     F  VE+     E
Sbjct: 181 EDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDATFNVVEDIELEEE 240

Query: 59  NNQHQVTL 36
           +  +Q+ +
Sbjct: 241 DETNQIPI 248

[225][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
           PCC 6803 RepID=RPOA_SYNY3
          Length = 314

 Score =  118 bits (295), Expect = 4e-25
 Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I G++E V EI++N+ E+VL+S     +   +   GPG +TA    +P  VE+
Sbjct: 61  VNHEFATILGVREDVLEIMLNMKELVLKSYTDQPQIGRLTAIGPGTVTAAQFEVPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           ID  Q+IATL E   L +E ++ER  GY +      E+ S     ID+VFMPV   N+++
Sbjct: 121 IDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKVNYTV 180

Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
                +G   ++ L L+IWTNGS+ P+EAL +AS  + NLFIP   + E
Sbjct: 181 EDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229

[226][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
           RepID=A8YCU3_MICAE
          Length = 313

 Score =  117 bits (293), Expect = 6e-25
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ + G++E V E+++N+ EI L+S    T+   +   GP  + A    LP  VEI
Sbjct: 61  VNHEFATVEGVREDVMELMLNMKEITLKSYTNQTQIGRLVATGPATVVAAQFDLPSEVEI 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           +D  Q++ATL E   L +E ++E+ +GY     +  E  S     ID++FMPV   N+S+
Sbjct: 121 VDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPVTKVNYSV 180

Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
                   + ++ L LEIWTNGS+ PKEAL QA+  L+NLF P
Sbjct: 181 EDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223

[227][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
           CCY0110 RepID=A3IQ28_9CHRO
          Length = 314

 Score =  117 bits (293), Expect = 6e-25
 Identities = 72/187 (38%), Positives = 106/187 (56%), Gaps = 4/187 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I G++E V EI++N+ EIVL+S     +   +   G  ++TA    LP  VE+
Sbjct: 61  VNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFDLPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           I+ TQ IATLTE   L +E +IE+  GY     ++ E  +     IDAVFMPV   N+S+
Sbjct: 121 INPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYSV 180

Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
            S  G   E ++ L LEIWTNGS  PKEAL +A+  L++LF P   +         NQ +
Sbjct: 181 ESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL---------NQLE 231

Query: 44  VTLPFFP 24
             +P +P
Sbjct: 232 TAVPEYP 238

[228][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WQT5_CYAA5
          Length = 314

 Score =  117 bits (292), Expect = 8e-25
 Identities = 72/187 (38%), Positives = 106/187 (56%), Gaps = 4/187 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I G++E V EI++N+ EIVL+S     +   +   G  ++TA    LP  VE+
Sbjct: 61  VNHEFATIPGVREDVLEIMLNMKEIVLKSYTDQPQIGRLVATGAAHVTAGQFDLPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           I+ TQ IATLTE   L +E +IE+  GY     ++ E  +     IDAVFMPV   N+S+
Sbjct: 121 INPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYSV 180

Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
            S  G   E ++ L LEIWTNGS  PKEAL +A+  L++LF P   +         NQ +
Sbjct: 181 ESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL---------NQLE 231

Query: 44  VTLPFFP 24
             +P +P
Sbjct: 232 TAVPEYP 238

[229][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
           frauenfeldii RepID=Q6J224_9STRA
          Length = 298

 Score =  117 bits (292), Expect = 8e-25
 Identities = 69/184 (37%), Positives = 108/184 (58%), Gaps = 5/184 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H+++ I G++E + EIL+NL  IV++S+    +   + VQGP  +TA  I LP  ++I
Sbjct: 61  IRHEFATIPGVREDILEILLNLKGIVIKSDTTEIKFGRLKVQGPLVLTADSIDLPSGIKI 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFMPVENANHSIH 219
           ++   +IAT++  I+L +E KIE   GY L  ++ N+       ID++FMPV+  N  I 
Sbjct: 121 VNPNHYIATISTSINLELEFKIEHGIGYKLASQLFNDENKNFLQIDSIFMPVQKVNFKIE 180

Query: 218 S-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYLENNQH 48
           + Y   N   E L LEIWTNGS+ P EAL +A + +IN F   L  +  +ET    +N  
Sbjct: 181 NLYDADNSISERLILEIWTNGSIEPIEALKKACKIIINCFNSLLKTQNTKETTKKTSNNR 240

Query: 47  QVTL 36
           ++T+
Sbjct: 241 KLTI 244

[230][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
           sinensis RepID=RPOA_ODOSI
          Length = 312

 Score =  117 bits (292), Expect = 8e-25
 Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 9/178 (5%)
 Frame = -3

Query: 563 DYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDN 384
           ++S I GI+E + EIL+NL  IVL+S     +   + ++GP  +TA  I LP  VEI++ 
Sbjct: 64  EFSTIPGIREDILEILLNLKGIVLKSKTNDLKFGRLKIKGPAVVTANCIQLPSEVEIVNP 123

Query: 383 TQHIATLTEPIDLCIELKIERNRGYSL------KMSNNFEDRSYPIDAVFMPVENANHSI 222
             +IAT+T    L IE KIE   GY L      K S ++      IDA+FMPV+  +  I
Sbjct: 124 NHYIATITTSNVLEIEFKIESGTGYKLAGQTFCKKSQDY----LQIDAIFMPVQKVDFKI 179

Query: 221 HS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH--VEEETFYLEN 57
            + Y N N+  E LFL+IWTNGS++P+EA+  ASR +I+ F   L   + +ET   EN
Sbjct: 180 ENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLLENKLPQETKESEN 237

[231][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
           RepID=RPOA_MESVI
          Length = 316

 Score =  117 bits (292), Expect = 8e-25
 Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 3/167 (1%)
 Frame = -3

Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
           +++S + GI+ESV EIL+NL EIV R+     +   + +QGP  + A ++ LP ++E++D
Sbjct: 68  NEFSILPGIRESVLEILLNLKEIVFRTKSLDVQKGYLSIQGPCVVKAANLQLPTSIEVVD 127

Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENANHSIHS 216
             Q+IATL+   +L +E  I   +GY +    +  N    S P+DA+FMP+   N+ +  
Sbjct: 128 GGQYIATLSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDAIFMPIHKVNYMVEQ 187

Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
                   E + LEIWTNGS++P++AL    + +I+LF P  H   E
Sbjct: 188 DHTSKFLTERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSSE 234

[232][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
           spumigena CCY9414 RepID=A0ZG51_NODSP
          Length = 315

 Score =  116 bits (291), Expect = 1e-24
 Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 4/170 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ + G++E V EILM + E++LRS     +   + V GP  +T     LP  VE+
Sbjct: 61  VSHEFATVPGVREDVLEILMKMKEVILRSYSSQPQIGRLLVNGPATVTVAHFDLPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           ID TQ++ATL E   L +E +IE+ +GY        E  S     ID+VFMPV   N+S+
Sbjct: 121 IDQTQYVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYSV 180

Query: 221 -HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
             + G  +  ++ L LE+WTNGS++P+EAL  A+  L+ LF P   +  E
Sbjct: 181 EEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNPLKDISLE 230

[233][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
           variabilis ATCC 29413 RepID=RPOA_ANAVT
          Length = 315

 Score =  116 bits (290), Expect = 1e-24
 Identities = 63/170 (37%), Positives = 100/170 (58%), Gaps = 4/170 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ + G++E V EI+M + E++L+S     +   + V GP  ITA    LP  VE+
Sbjct: 61  VSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           ID TQ++AT+ E   L +E +IER +GY        E  S     ID++FMPV   N+S+
Sbjct: 121 IDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSV 180

Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
                +G+  ++ L LE+WTNGS++P+EAL  A+  L++LF P   +  E
Sbjct: 181 EEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230

[234][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
           7120 RepID=RPOA_ANASP
          Length = 315

 Score =  116 bits (290), Expect = 1e-24
 Identities = 63/170 (37%), Positives = 100/170 (58%), Gaps = 4/170 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ + G++E V EI+M + E++L+S     +   + V GP  ITA    LP  VE+
Sbjct: 61  VSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           ID TQ++AT+ E   L +E +IER +GY        E  S     ID++FMPV   N+S+
Sbjct: 121 IDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSV 180

Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
                +G+  ++ L LE+WTNGS++P+EAL  A+  L++LF P   +  E
Sbjct: 181 EEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230

[235][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
           punctiforme PCC 73102 RepID=B2ITN1_NOSP7
          Length = 315

 Score =  115 bits (289), Expect = 2e-24
 Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 4/170 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ + G++E V EILM + E++L++     +   + V GP  ITA    LP  VE+
Sbjct: 61  VSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVSGPTTITAAHFDLPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           ID TQ++AT+ E   L +E +IE+ +GY        E  S     ID++FMPV   N+S+
Sbjct: 121 IDPTQYVATIAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSV 180

Query: 221 -HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
             S G G   ++ L LE+WTNGS++P+EAL  A+  L++LF P   +  E
Sbjct: 181 EESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230

[236][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
           RepID=Q4C148_CROWT
          Length = 314

 Score =  115 bits (289), Expect = 2e-24
 Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 5/164 (3%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I G++E V EI++N+ EIVL+S     +   +   G  ++TA    LP  VE+
Sbjct: 61  VNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFELPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENANHS 225
           ++ TQ IATLTE   L +E +IE+  GY + +  + E+ +      IDAVFMPV   N+S
Sbjct: 121 VNPTQPIATLTEGAKLEMEFRIEKGVGY-VPVERSSEEPAALDFLQIDAVFMPVTKVNYS 179

Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
           + S  G   E ++ L LEIWTNGS  PKEAL +A+  L++LF P
Sbjct: 180 VESIRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223

[237][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
           RepID=C7QS38_CYAP0
          Length = 316

 Score =  114 bits (286), Expect = 4e-24
 Identities = 65/163 (39%), Positives = 94/163 (57%), Gaps = 4/163 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I G++E V EI++N+ EIVL+S     +   +     G +TA +  LP  VE+
Sbjct: 63  VNHEFATIPGVREDVLEIMLNMKEIVLKSYSDQAQIGRLVATSAGTVTAANFELPSEVEV 122

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           +D TQ++ATLTE   L +E +IE   GY        +  S     IDAVFMPV   N+ +
Sbjct: 123 VDPTQYVATLTEGSKLEMEFRIETGTGYKGVERGKDDGTSLDFLEIDAVFMPVTKVNYIV 182

Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
               G   E Q+ L LEIWTNGS  PKEAL +A+  +++LF P
Sbjct: 183 EDIRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225

[238][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
           0708 RepID=B9YIU5_ANAAZ
          Length = 314

 Score =  114 bits (286), Expect = 4e-24
 Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ + G++E V EILM + E++L++     +   + V GP  +TA    LP  VE+
Sbjct: 61  VSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVNGPVTVTAAHFDLPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           ID TQ++AT+ +   L +E +IER +GY        E  S     ID+VFMPV   N+S+
Sbjct: 121 IDPTQYVATIADGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYSV 180

Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
                    ++ L LE+WTNGS++P+EAL  A+  L++LF P   +  E
Sbjct: 181 EEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 229

[239][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
           PCC 7822 RepID=B4B3P8_9CHRO
          Length = 314

 Score =  114 bits (286), Expect = 4e-24
 Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 4/169 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I+G++E V E+++N+ EI L+S     +   +   GP  +TA    LP  VEI
Sbjct: 61  VNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAGQFDLPSEVEI 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           +D +Q++ATL E   L +E +IE+ +GY        +  S     ID+VFMPV   N+S+
Sbjct: 121 VDPSQYVATLAEGSKLEMEFRIEKGKGYRAIERGKDDSTSLDFLQIDSVFMPVTKVNYSV 180

Query: 221 HSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
                +G   ++ L +EIWTNGS+ PKEAL +A+  +++LF P   + E
Sbjct: 181 EDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229

[240][TOP]
>UniRef100_Q6J221 RNA polymerase alpha subunit (Fragment) n=1 Tax=Phaeodactylum sp.
           Bohlin BA153065 RepID=Q6J221_9STRA
          Length = 298

 Score =  114 bits (285), Expect = 5e-24
 Identities = 69/161 (42%), Positives = 97/161 (60%), Gaps = 4/161 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H++S I G++E + EIL+NL  I+  S +  T+   + VQGP  +TA  I LPP VEI
Sbjct: 61  ITHEFSTIPGVREDILEILLNLKGIICTSQIQDTQFGHLKVQGPSVVTADLIQLPPEVEI 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSY-PIDAVFMPVENANHSI 222
           I+   +IAT+T    L IE K     GY L  S  F  ED +Y  +D +FMPV+  +  I
Sbjct: 121 INPNHYIATITTSNILEIEFKFVYGGGYHL-ASQKFCREDENYLQLDTIFMPVQKVDFKI 179

Query: 221 HS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
            + Y   N   E LFL+IWTNGS++P +AL  A++ +I+LF
Sbjct: 180 ENIYDATNNISERLFLDIWTNGSISPNDALESAAQVIIDLF 220

[241][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
           maxima CS-328 RepID=B5W6Q8_SPIMA
          Length = 314

 Score =  114 bits (284), Expect = 7e-24
 Identities = 63/163 (38%), Positives = 100/163 (61%), Gaps = 6/163 (3%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I G++E V EI++NL E VL+S+ Y  +   + VQGP  +T     LP  VE+
Sbjct: 61  VNHEFATIEGVREDVLEIMLNLKEAVLKSHTYQKQIGRLLVQGPATVTVGHFDLPSEVEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS-----YPIDAVFMPVENANH 228
           ++  Q+IATL+    L +E +IE+  GY  +  +   D S       IDA+FMPV   N+
Sbjct: 121 VNKNQYIATLSPGATLEMECQIEKGTGY--RAVDRHRDDSAALDFLQIDAIFMPVRKVNY 178

Query: 227 SIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
           ++    +G   +++ L LEIWT+GSLTP+EA+ QA+  L++LF
Sbjct: 179 TVEDARDGGSLEKDRLTLEIWTSGSLTPQEAISQAAAILVDLF 221

[242][TOP]
>UniRef100_A6MW22 DNA-directed RNA polymerase subunit alpha n=1 Tax=Rhodomonas salina
           RepID=RPOA_RHDSA
          Length = 314

 Score =  114 bits (284), Expect = 7e-24
 Identities = 68/188 (36%), Positives = 106/188 (56%), Gaps = 9/188 (4%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H++S I GI+E V EIL+NL E+VL+S         + VQGP  +T  ++ LP  VE+
Sbjct: 61  VSHEFSTIPGIREDVLEILLNLKEVVLKSQTKNPSVGRLRVQGPAIVTTSNLELPSEVEL 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           ID  Q+IAT+     L +E +IE  +GY L +  + ++ S     +DA+FMPV+  N+  
Sbjct: 121 IDPNQYIATICGNNILEMEFRIETGKGYHL-IERSIDETSIDFLQVDAIFMPVKKVNYLT 179

Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV-----EEETFYLE 60
                N N  QE L LE+WTNGS+ P++A+ Q  + L  L  P   +     EE+T   +
Sbjct: 180 KDIRSNDNLLQEQLLLEVWTNGSIDPQDAVSQGGKILTELLHPLKEINFKSDEEDTVAED 239

Query: 59  NNQHQVTL 36
           +  +Q+ +
Sbjct: 240 SKINQILI 247

[243][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
           violaceus RepID=RPOA_GLOVI
          Length = 314

 Score =  114 bits (284), Expect = 7e-24
 Identities = 66/171 (38%), Positives = 103/171 (60%), Gaps = 5/171 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ + GI+E V +IL+N+ E+VLRS     +   + VQGP  +TA D+ LP  V++
Sbjct: 61  VNHEFATMKGIREDVLDILLNMKELVLRSYTSDIQIGRLAVQGPKRVTAADLELPTEVQV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENANHS 225
           +    +IATL E   L +E +IER +GY   +    ED +      IDA+FMPV   N +
Sbjct: 121 VHPRHYIATLAEDGQLEMEFQIERGKGYR-AIERGSEDGAAIDYLSIDAIFMPVRKVNWT 179

Query: 224 IHSYGN-GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
           + S  +  N +Q+ L LEIWT+GSL+P+EAL QA++ L++   P   +  E
Sbjct: 180 VESERSAANVEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRPLQEITFE 230

[244][TOP]
>UniRef100_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Thalassiosira
           pseudonana RepID=RPOA_THAPS
          Length = 313

 Score =  112 bits (281), Expect = 2e-23
 Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 4/161 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           +  ++S I G++E + EIL+NL  IVL+S     +   + +QGP  ITA  I LPP +EI
Sbjct: 63  VKDEFSLIPGVREDILEILLNLKGIVLKSKTPNRQFGRLRLQGPAVITASSIQLPPEIEI 122

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHSI 222
           I+   +IAT++    L IE KIE    Y L     S+ FED     DA+FMPV+  +  +
Sbjct: 123 INPNHYIATISSSHILEIEFKIESGSKYRLANELFSDKFED-FIETDAIFMPVQKVDFKV 181

Query: 221 HS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
            + Y N N  +E L ++IWTNGS++P++A+   S  +INLF
Sbjct: 182 ENVYDNSNNIKERLLIDIWTNGSISPEQAIFSGSNLIINLF 222

[245][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
           uncinata RepID=Q2WGF4_SELUN
          Length = 245

 Score =  112 bits (280), Expect = 2e-23
 Identities = 67/161 (41%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H+Y  IAG++ESVHE  MNL EI L ++    + A I + GPG + ARD + P ++ I
Sbjct: 69  INHEYPAIAGVRESVHETSMNLKEIALTAHPSAAQEAHIPIVGPGKVAARDTVPPSSIGI 128

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH-- 219
           I   QH AT+T  I      ++E   GY  +    ++  S P DAV MP+ NAN+SIH  
Sbjct: 129 IYPAQHAATVTRKIRSSTGSRVEGGCGYRRRNMVEYQKGSPPPDAVSMPIRNANYSIHRL 188

Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
              +G   +E+   E  T+GS TP EA ++ASR+  NLF P
Sbjct: 189 ESHSGGIMKEMPPPEARTDGSPTPGEATYEASRDSANLFSP 229

[246][TOP]
>UniRef100_Q01569 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pyrenomonas
           salina RepID=RPOA_PYRSA
          Length = 314

 Score =  112 bits (280), Expect = 2e-23
 Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H++S I GI+E V EIL+NL E+VL+S +  +    + VQGP  +T   + LP  +E+
Sbjct: 61  VSHEFSTIPGIREDVLEILLNLKEVVLKSQIGTSGVGRLRVQGPAIVTTNHLELPSEIEL 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDR--SYPIDAVFMPVENANH-SI 222
           ID  Q+IAT+     L +E +IE  +GY+L   ++ E       +DA+FMPV+  N+ S 
Sbjct: 121 IDPNQYIATICGNNILEMEFRIETGKGYNLVERDSDESSIDFLQVDAIFMPVKKVNYLSK 180

Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
                 N  QE L LE+WTNGS+ P++A+ QA + L  L  P   +
Sbjct: 181 DIRSENNLIQEQLTLEVWTNGSIDPQDAVSQAGKILTELLFPLKEI 226

[247][TOP]
>UniRef100_Q6B8X4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gracilaria
           tenuistipitata var. liui RepID=RPOA_GRATL
          Length = 314

 Score =  112 bits (280), Expect = 2e-23
 Identities = 69/186 (37%), Positives = 109/186 (58%), Gaps = 10/186 (5%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           I H++S I G++E V EIL+NL ++VL+S+    +   I +QGP  IT     +PP + I
Sbjct: 61  INHEFSTITGVREDVLEILLNLKKVVLKSHSDTPQIGRIRLQGPAIITTGLFEVPPEILI 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           ID  Q+IAT+       +E +IE+  GY L ++  F+ +S     IDAVFMPV   N+++
Sbjct: 121 IDPQQYIATICNNTIFEMEFRIEKGSGYKL-VNKGFDKKSIDFLQIDAVFMPVTKFNYTV 179

Query: 221 HSYGNGNEK-------QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
                  EK       QE LFLE+WTNGSL+P+EA+ + ++ L +LF P  ++  +    
Sbjct: 180 ------EEKKISPILIQEKLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLTNLNFQNANN 233

Query: 62  ENNQHQ 45
            +N+++
Sbjct: 234 TDNEYE 239

[248][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
           PCC 7424 RepID=B7KI11_CYAP7
          Length = 314

 Score =  112 bits (279), Expect = 3e-23
 Identities = 57/169 (33%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I+G++E V E+++N+ EI L+S     +   +   GP  +TA    +P  +E+
Sbjct: 61  VNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAAQFDVPSEIEV 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           +D +Q++ATL++   L +E ++E+ +GY        +  S     ID+VFMPV   N+S+
Sbjct: 121 VDPSQYVATLSDGSKLEMEFRVEKGKGYRAIERGKDDTTSLDFLQIDSVFMPVTKVNYSV 180

Query: 221 HSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
                +G   ++ L LEIWTNGS+ PKEAL +A+  +++LF P   + E
Sbjct: 181 EDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNE 229

[249][TOP]
>UniRef100_Q6J222 RNA polymerase alpha subunit (Fragment) n=1 Tax=Navicula salinicola
           RepID=Q6J222_9STRA
          Length = 298

 Score =  112 bits (279), Expect = 3e-23
 Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 4/161 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H++S I G++E + EIL+NL  IVL S    T+   + +QGP  +TA  I LPP +EI
Sbjct: 61  VSHEFSTIPGVREDILEILLNLKGIVLTSKTQETQFGRLKIQGPCVVTADLIQLPPNLEI 120

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           ++  Q+IAT+T    + IE K E   GY    S  F D +     +D VFMPV   +  I
Sbjct: 121 VNPNQYIATITTSNIIEIEFKFEYGIGYKF-ASQTFSDEADNFLQLDTVFMPVPKVDFKI 179

Query: 221 HS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
            + Y   N   E LF++IWTNGS+ P +AL  A++ +I+LF
Sbjct: 180 ENVYDTANNITERLFIDIWTNGSIPPNDALESAAQIIIDLF 220

[250][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
           PCC 7425 RepID=B8HMS8_CYAP4
          Length = 314

 Score =  111 bits (277), Expect = 5e-23
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 4/167 (2%)
 Frame = -3

Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
           + H+++ I G++E   +IL+ + E+VLRS     +   + +QGP  +TA +  + P VE+
Sbjct: 60  VNHEFATIPGVREDALDILLRMKELVLRSYSPDPQIGRLFIQGPATVTAINFEVSPDVEV 119

Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
           I+   +IATL+    L +E KIE+ +GY        E  S     IDA+FMPV   N+++
Sbjct: 120 INLDHYIATLSADATLEMEFKIEQGKGYRAIERGKDESASLDFLQIDAIFMPVRKVNYTV 179

Query: 221 HSYGNGN-EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
               +G   +++ L LEIWTNGSLTP+EAL+Q +  L++LF P   V
Sbjct: 180 EDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLKDV 226