[UP]
[1][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 410 bits (1053), Expect = e-113
Identities = 200/200 (100%), Positives = 200/200 (100%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR
Sbjct: 60 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV
Sbjct: 120 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL
Sbjct: 180 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQHQVTLPFFPFHNRLVN
Sbjct: 240 ENNQHQVTLPFFPFHNRLVN 259
[2][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 405 bits (1040), Expect = e-111
Identities = 196/200 (98%), Positives = 199/200 (99%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYL
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQHQVTLPFFPFHNRLVN
Sbjct: 240 ENNQHQVTLPFFPFHNRLVN 259
[3][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 402 bits (1033), Expect = e-110
Identities = 195/200 (97%), Positives = 198/200 (99%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEET YL
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQHQVTLPFFPFHNRLVN
Sbjct: 240 ENNQHQVTLPFFPFHNRLVN 259
[4][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 401 bits (1030), Expect = e-110
Identities = 194/200 (97%), Positives = 198/200 (99%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYL
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQHQVTLP FPFHNRLVN
Sbjct: 240 ENNQHQVTLPLFPFHNRLVN 259
[5][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 400 bits (1027), Expect = e-110
Identities = 194/200 (97%), Positives = 197/200 (98%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEIIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYL
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQHQVTLP FPFHNRLVN
Sbjct: 240 ENNQHQVTLPLFPFHNRLVN 259
[6][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 400 bits (1027), Expect = e-110
Identities = 194/200 (97%), Positives = 197/200 (98%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEIIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYL
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQHQVTLP FPFHNRLVN
Sbjct: 240 ENNQHQVTLPLFPFHNRLVN 259
[7][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 396 bits (1017), Expect = e-109
Identities = 192/200 (96%), Positives = 196/200 (98%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITA+
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEIIDNTQHIATL EPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYL
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQHQVTLP FPFHNRLVN
Sbjct: 240 ENNQHQVTLPLFPFHNRLVN 259
[8][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 393 bits (1009), Expect = e-108
Identities = 189/200 (94%), Positives = 194/200 (97%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR
Sbjct: 60 TCITRVKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIATLTEPIDLCI LKIERNRGYSLK+SNN EDRSYPIDAVFMPV
Sbjct: 120 DIILPPSVEIVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYL
Sbjct: 180 QNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQHQVTLPFFPFHNR N
Sbjct: 240 ENNQHQVTLPFFPFHNRFFN 259
[9][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 390 bits (1003), Expect = e-107
Identities = 189/200 (94%), Positives = 195/200 (97%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIAT+TE IDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV
Sbjct: 120 DIILPPSVEIVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF+L
Sbjct: 180 QNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQHQVTLP FPFHNRLVN
Sbjct: 240 ENNQHQVTLPLFPFHNRLVN 259
[10][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 388 bits (997), Expect = e-106
Identities = 186/200 (93%), Positives = 195/200 (97%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNLNEIVL+SNLYGTRN ICVQGPGYITAR
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNPFICVQGPGYITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIATLTEPI+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV
Sbjct: 120 DIILPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLINLFIPFLHVEEETFYL
Sbjct: 180 QNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQHQVTLP FPFHN+LVN
Sbjct: 240 ENNQHQVTLPVFPFHNKLVN 259
[11][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 383 bits (984), Expect = e-105
Identities = 186/200 (93%), Positives = 191/200 (95%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYG RNA+ICVQGPGYITAR
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGARNAIICVQGPGYITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEIIDNTQHIATLTE IDLCI LKIERNRGYSLK+ N FEDRSYPIDAVFMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYL
Sbjct: 180 QNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
ENNQH VTLP FPFHNRLVN
Sbjct: 240 ENNQHHVTLPLFPFHNRLVN 259
[12][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 374 bits (961), Expect = e-102
Identities = 182/199 (91%), Positives = 190/199 (95%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNL EIVLRSNLYGT NALICVQGPG ITAR
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGSITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEIIDNTQHIATLTEPIDLCI L+IERNRGYSLKM N+FED SYPIDA+FMPV
Sbjct: 120 DIILPPSVEIIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYG GNEKQEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYL
Sbjct: 180 QNANHSIHSYGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLV 6
ENNQH+VTLP FPFHNRLV
Sbjct: 240 ENNQHKVTLPLFPFHNRLV 258
[13][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 369 bits (947), Expect = e-100
Identities = 179/199 (89%), Positives = 188/199 (94%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSENIPHDYSNI GIQESVHEILMNL EIVLRSNLYGT NALICVQGPGYITAR
Sbjct: 60 TCITRAKSENIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGYITAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIATLTEPIDLCI L+IERNRGYSLKM N FED SYPIDA+FMPV
Sbjct: 120 DIILPPSVEIMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYG GNE QEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYL
Sbjct: 180 QNANHSIHSYGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYL 239
Query: 62 ENNQHQVTLPFFPFHNRLV 6
ENN+ +VTLP FPFHNRLV
Sbjct: 240 ENNEDKVTLPLFPFHNRLV 258
[14][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 354 bits (909), Expect = 3e-96
Identities = 168/198 (84%), Positives = 184/198 (92%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAFICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI+LPP+VEI+DNTQHIA+LTEPIDL I L+IERNRGY +K NNF+D SYPIDAVFMPV
Sbjct: 120 DIVLPPSVEIVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSYG GNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLH EEE FYL
Sbjct: 180 QNANHSIHSYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
ENNQH+VTLPFFPFH+RL
Sbjct: 240 ENNQHKVTLPFFPFHDRL 257
[15][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 348 bits (893), Expect = 2e-94
Identities = 165/198 (83%), Positives = 181/198 (91%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS IAGIQESVHEILMNL EIVLRSNLYGTRNA IC +GPGY+TA+
Sbjct: 62 TCITRAKSEKIPHEYSIIAGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQ 121
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIA+LTEPIDLCI L+IERNRGY +K NNF D SYPID VFMPV
Sbjct: 122 DIILPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPV 181
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L
Sbjct: 182 RNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHL 241
Query: 62 ENNQHQVTLPFFPFHNRL 9
EN+QH+VTLPFFPFH++L
Sbjct: 242 ENSQHKVTLPFFPFHDKL 259
[16][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 347 bits (890), Expect = 4e-94
Identities = 164/199 (82%), Positives = 178/199 (89%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLR NLYGTRNA IC +GPGY+TA+
Sbjct: 62 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQ 121
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQH+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFMPV
Sbjct: 122 DIILPPSVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPV 181
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIH YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L
Sbjct: 182 RNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 241
Query: 62 ENNQHQVTLPFFPFHNRLV 6
ENNQH VTLPFFPFH+RLV
Sbjct: 242 ENNQHDVTLPFFPFHDRLV 260
[17][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 335 bits (860), Expect = 1e-90
Identities = 161/198 (81%), Positives = 176/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR A IC +GPGY+TA+
Sbjct: 54 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQ 113
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+DNTQHIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFMPV
Sbjct: 114 DIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPV 173
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +L
Sbjct: 174 RNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHL 233
Query: 62 ENNQHQVTLPFFPFHNRL 9
E NQH+ TLP FH+RL
Sbjct: 234 EYNQHKSTLPPLTFHDRL 251
[18][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 335 bits (860), Expect = 1e-90
Identities = 161/198 (81%), Positives = 176/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR A IC +GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+DNTQHIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFMPV
Sbjct: 120 DIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +L
Sbjct: 180 RNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
E NQH+ TLP FH+RL
Sbjct: 240 EYNQHKSTLPPLTFHDRL 257
[19][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 335 bits (858), Expect = 2e-90
Identities = 161/198 (81%), Positives = 178/198 (89%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK E IPH+YS I GIQESVHEILMNL EIVLRSNLYGTRNA ICV+GPG +TA+
Sbjct: 60 TCITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILP +VEI+DNTQ+IA LTEPI+LCI L+IERNRGY +K NF+D SYPIDAVFMPV
Sbjct: 120 DIILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
ENNQ++VTLPFF FH+RL
Sbjct: 240 ENNQYKVTLPFFTFHDRL 257
[20][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 334 bits (857), Expect = 3e-90
Identities = 159/198 (80%), Positives = 176/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTRNA IC++GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRNASICIRGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VE +DNTQHIA LTEPID CIEL+IERNRGY +K NN +D SYPIDAVFMPV
Sbjct: 120 DIISPPSVETVDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH +EE L
Sbjct: 180 RNANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
E+NQ+ VTLPFF FH+RL
Sbjct: 240 EDNQNGVTLPFFTFHDRL 257
[21][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 333 bits (853), Expect = 8e-90
Identities = 161/200 (80%), Positives = 175/200 (87%), Gaps = 1/200 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLR NLYGTRNA IC +GPGY+TA+
Sbjct: 62 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQ 121
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQH+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFMPV
Sbjct: 122 DIILPPSVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPV 181
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIH YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFI FLH +EE +L
Sbjct: 182 RNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHL 241
Query: 62 ENNQHQVTLP-FFPFHNRLV 6
ENNQH VTL FFPFH RLV
Sbjct: 242 ENNQHDVTLHFFFPFHYRLV 261
[22][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 330 bits (845), Expect = 7e-89
Identities = 158/198 (79%), Positives = 177/198 (89%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH++S IAGIQES+HEILMNL +VL+SNLYGT +A I V+GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEIIDNTQHIA+LTE IDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV
Sbjct: 120 DIILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L
Sbjct: 180 RNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
E NQH+VTLP F FH RL
Sbjct: 240 EINQHKVTLPLFTFHGRL 257
[23][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 329 bits (843), Expect = 1e-88
Identities = 157/199 (78%), Positives = 176/199 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQES+HEILMNL EIVL+SNLYGTR+A IC +GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 180 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNF 239
Query: 62 ENNQHQVTLPFFPFHNRLV 6
ENNQH+VTLP F FH+RL+
Sbjct: 240 ENNQHKVTLPLFTFHDRLL 258
[24][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 329 bits (843), Expect = 1e-88
Identities = 156/198 (78%), Positives = 175/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A IC +GPGY+TA+
Sbjct: 60 TCITRVKSEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F L
Sbjct: 180 RNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
ENNQH+VTLP F FH+ L
Sbjct: 240 ENNQHKVTLPLFTFHDIL 257
[25][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 329 bits (843), Expect = 1e-88
Identities = 157/198 (79%), Positives = 177/198 (89%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKS+ IPH++S I GIQES+HEILMNL EIVLRSNLYGT NA ICV+GPG +TA+
Sbjct: 60 TCITRAKSKKIPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHNASICVKGPGCVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEIIDNTQHIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFMPV
Sbjct: 120 DIILPPSVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE+F+L
Sbjct: 180 RNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
E NQH++TLP F FH+RL
Sbjct: 240 EKNQHKITLPLFAFHDRL 257
[26][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 328 bits (842), Expect = 2e-88
Identities = 158/198 (79%), Positives = 179/198 (90%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA+LTEPIDLCIEL+IERNRGY +K NN ++RSYPIDAVFMPV
Sbjct: 120 DIISPPSVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWT+GSLTPKEAL++ASRNLI+LFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
E+NQ +VTLPFF FH+ L
Sbjct: 240 EDNQSRVTLPFFTFHDGL 257
[27][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 328 bits (842), Expect = 2e-88
Identities = 160/198 (80%), Positives = 175/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIA LTEPI LCIEL+IERNRGY +K NNF++ SYPIDAVFMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSY NGNE QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPF H EE +L
Sbjct: 180 RNANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HL 236
Query: 62 ENNQHQVTLPFFPFHNRL 9
ENNQH+ TLP F FH RL
Sbjct: 237 ENNQHKGTLPLFNFHGRL 254
[28][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 328 bits (841), Expect = 2e-88
Identities = 157/199 (78%), Positives = 175/199 (87%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQES+HEILMNL EIVLRSNLYGTR+A IC +GPG +TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGSVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIA LTEPI+LC+ELK+ERNRGY +K NN +D SY IDAVFMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL +ASRNLI+LFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNL 239
Query: 62 ENNQHQVTLPFFPFHNRLV 6
ENNQ +VTLP F FH+R V
Sbjct: 240 ENNQQKVTLPLFTFHDRFV 258
[29][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 327 bits (838), Expect = 4e-88
Identities = 158/198 (79%), Positives = 176/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSEN+PH+YS IAGIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+
Sbjct: 34 TCITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQ 93
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTEPIDLCI L+I+RNRGY +KM +NF+D SYPIDAVFMPV
Sbjct: 94 DIILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPV 153
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEE L
Sbjct: 154 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPL 213
Query: 62 ENNQHQVTLPFFPFHNRL 9
E+NQH V L FH++L
Sbjct: 214 EDNQHTVPLSPLTFHDKL 231
[30][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 327 bits (838), Expect = 4e-88
Identities = 155/198 (78%), Positives = 175/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE +PH+YS I GIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+
Sbjct: 60 TCITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+ YL
Sbjct: 180 RNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
++NQH V L F FH++L
Sbjct: 240 QDNQHTVPLSPFTFHDKL 257
[31][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 327 bits (837), Expect = 6e-88
Identities = 155/198 (78%), Positives = 174/198 (87%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K E IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A IC +GPGY+TA+
Sbjct: 60 TCITRVKLEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F L
Sbjct: 180 RNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
ENNQH+VTLP F FH+ L
Sbjct: 240 ENNQHKVTLPLFTFHDIL 257
[32][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 327 bits (837), Expect = 6e-88
Identities = 155/198 (78%), Positives = 174/198 (87%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE +PH+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+
Sbjct: 60 TCITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+ YL
Sbjct: 180 RNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
++NQH V L F FH++L
Sbjct: 240 QDNQHTVPLSPFTFHDKL 257
[33][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 327 bits (837), Expect = 6e-88
Identities = 156/198 (78%), Positives = 176/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKS+ IPH++S I GIQES+HEILMNL EIVLRSNLYGT +A ICV+GPG +TA+
Sbjct: 60 TCITRAKSKKIPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHDASICVKGPGCVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEIIDNTQHIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFMPV
Sbjct: 120 DIILPPSVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE F+L
Sbjct: 180 RNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
E NQH++TLP F FH+RL
Sbjct: 240 EKNQHKITLPLFAFHDRL 257
[34][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 326 bits (836), Expect = 8e-88
Identities = 157/200 (78%), Positives = 177/200 (88%), Gaps = 2/200 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPG +TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIA L EPI+LCIELKIERNRGY ++ NNF+D SYP+DA+FMPV
Sbjct: 120 DIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE--ETF 69
N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE E F
Sbjct: 180 RNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENF 239
Query: 68 YLENNQHQVTLPFFPFHNRL 9
+L+NN+ +VTLP F FH +L
Sbjct: 240 HLKNNKKKVTLPLFTFHEKL 259
[35][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 325 bits (832), Expect = 2e-87
Identities = 154/198 (77%), Positives = 175/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE +PH+YS I GIQESVHEILMNL EI+LRSNLYGT +A ICV+GPG +TA+
Sbjct: 60 TCITRVKSEKVPHEYSTITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
++NQH V L F FH++L
Sbjct: 240 QDNQHTVPLSPFTFHDKL 257
[36][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 324 bits (831), Expect = 3e-87
Identities = 154/198 (77%), Positives = 175/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE +PH+YS I GIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+
Sbjct: 60 TCITRVKSEKVPHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTE ID CI L+I+RNRGY +K +NF+D SYPIDAVFMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
++NQH V L F FH++L
Sbjct: 240 QDNQHTVPLSPFTFHDKL 257
[37][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 324 bits (831), Expect = 3e-87
Identities = 153/198 (77%), Positives = 173/198 (87%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K E +PH+YS I GIQESVHEI+MNL EIVLRSNLYGT A +CV+GPGY+TA+
Sbjct: 60 TCITRVKFEKVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTSEASVCVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTEPID CI L+IERNRGY +K NF+D SYPIDAVFMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
++NQH V L F FH++L
Sbjct: 240 QDNQHTVPLSPFTFHDKL 257
[38][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 324 bits (830), Expect = 4e-87
Identities = 156/199 (78%), Positives = 175/199 (87%), Gaps = 1/199 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS + GIQESVHEILMNL EI+L+SNLYGT +A IC++GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIILKSNLYGTCDASICIRGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMP 246
DII PP VEI+DNTQHIA+L EPIDLCI L+IERNRGY +K +NNF+D SYPIDAVFMP
Sbjct: 120 DIISPPYVEIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMP 179
Query: 245 VENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
V NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH EEE +
Sbjct: 180 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLH 239
Query: 65 LENNQHQVTLPFFPFHNRL 9
L +NQH V LP F FH +L
Sbjct: 240 LADNQHTVPLPPFTFHEKL 258
[39][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 324 bits (830), Expect = 4e-87
Identities = 156/199 (78%), Positives = 177/199 (88%), Gaps = 1/199 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS + GIQESVH+ILMNL EIVLRSNLYGT +A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMP 246
DIILPP VE++DNTQHIA+LTEPI+LCI L+IERNRGY +K +NN +D SYPIDAVFMP
Sbjct: 120 DIILPPYVEVVDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMP 179
Query: 245 VENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
V NANHSIHSYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +
Sbjct: 180 VRNANHSIHSYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLH 239
Query: 65 LENNQHQVTLPFFPFHNRL 9
L NNQH V LP F FH++L
Sbjct: 240 LANNQHMVPLPPFTFHDKL 258
[40][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 322 bits (826), Expect = 1e-86
Identities = 155/198 (78%), Positives = 172/198 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK E IPH+YS I GIQESVHEILMNL EIVLRSNLYGT NA ICV+GPG +TA+
Sbjct: 60 TCITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI+LPP+VEIIDNTQHIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFMPV
Sbjct: 120 DILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE +L
Sbjct: 180 RNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
NN++ VT P F FH +L
Sbjct: 240 GNNKYNVTFPLFTFHKKL 257
[41][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 322 bits (825), Expect = 1e-86
Identities = 155/198 (78%), Positives = 175/198 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AKSE IPH+YSNI GI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GP ++TA+
Sbjct: 60 TCITCAKSEKIPHEYSNIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRHVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEIID TQHIA+LTEPIDLCI L+IERNRGY++K N +D YPIDAVFMPV
Sbjct: 120 DIISPPSVEIIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE F L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFIL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
++NQ++V LP F FH+RL
Sbjct: 240 KDNQNKVALPLFTFHDRL 257
[42][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 322 bits (824), Expect = 2e-86
Identities = 156/199 (78%), Positives = 178/199 (89%), Gaps = 1/199 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL +IVLRSNLYGT +ALICV+GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFED-RSYPIDAVFMP 246
DI+LPP+VEI+DNTQHIA+LTEPIDL I L+IER+RGY++K N F+D YPIDAVFMP
Sbjct: 120 DILLPPSVEIVDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMP 179
Query: 245 VENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
V NANHSI SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASR+LI+LFIPFL E+E
Sbjct: 180 VRNANHSIQSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLP 239
Query: 65 LENNQHQVTLPFFPFHNRL 9
LENNQ++VTLPFF FH+RL
Sbjct: 240 LENNQYKVTLPFFTFHDRL 258
[43][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 321 bits (822), Expect = 3e-86
Identities = 158/202 (78%), Positives = 178/202 (88%), Gaps = 4/202 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH++S IAGIQES+HEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSYPIDAVFM 249
DIILPP VEIIDNTQHIA+LT+ IDLCI L+IERNRGY +K +NNF +D SY IDAVFM
Sbjct: 120 DIILPPFVEIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFM 179
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+ FIPFLH EEE
Sbjct: 180 PVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENL 239
Query: 68 YL--ENNQHQVTLPFFPFHNRL 9
+L E NQH+VTLP F FH++L
Sbjct: 240 HLEIEKNQHKVTLPLFCFHDKL 261
[44][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 320 bits (820), Expect = 5e-86
Identities = 154/198 (77%), Positives = 171/198 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK E IPH+YS I GIQESVHEILMNL EIVLRSNLYGT NA ICV+GPG +TA+
Sbjct: 60 TCITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI+LPP+VEIIDNTQHIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFMPV
Sbjct: 120 DILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE +L
Sbjct: 180 RNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
N++ VT P F FH +L
Sbjct: 240 GKNKYNVTFPLFTFHKKL 257
[45][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 319 bits (817), Expect = 1e-85
Identities = 154/198 (77%), Positives = 172/198 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE PH+YS IAGIQESVHEILMNL EIVLRSNLYGT +A ICV+GPG +TA
Sbjct: 60 TCITRVKSEKAPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGCVTAE 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DNTQHIA LTEPID CI L+IERNRGY LK +NFED SYPIDAVFMPV
Sbjct: 120 DIILPPSVEIVDNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
E+ +H + L FH+++
Sbjct: 240 EDGEHTIPLSPLSFHDKV 257
[46][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 319 bits (817), Expect = 1e-85
Identities = 153/198 (77%), Positives = 173/198 (87%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE + H+YS IAGIQESVHEILMNL EIV RSNLYGT +A ICV+GPGY+TA+
Sbjct: 60 TCITRVKSEKVAHEYSTIAGIQESVHEILMNLKEIVFRSNLYGTCDASICVRGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI+LPP VEI+DNTQHIA L EPI+LCI L+IERNRGY +K NF+D SYPIDAVFMP+
Sbjct: 120 DIVLPPYVEIVDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPI 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH+EE+ +L
Sbjct: 180 RNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
ENNQH V L F FH++L
Sbjct: 240 ENNQHTVPLAPFFFHDKL 257
[47][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 317 bits (813), Expect = 4e-85
Identities = 155/198 (78%), Positives = 173/198 (87%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GP +TA+
Sbjct: 60 TCITRAKSEKIPHEYSTILGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRGVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTEPIDLCI L++ERNRGY +K NNF+D S+PIDA+FMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH EE L
Sbjct: 180 RNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEENV-NL 238
Query: 62 ENNQHQVTLPFFPFHNRL 9
E+NQH+V+LP F FHNRL
Sbjct: 239 EDNQHKVSLPLFTFHNRL 256
[48][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 316 bits (810), Expect = 8e-85
Identities = 153/196 (78%), Positives = 171/196 (87%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQES+HEILMNL EIVLRSNLYGTR A IC +GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTREASICFKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILP +VE+IDNTQHIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFMPV
Sbjct: 120 DIILP-SVEVIDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPV 178
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 179 RNANHSIHSYVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNF 238
Query: 62 ENNQHQVTLPFFPFHN 15
ENNQH++TLP F FH+
Sbjct: 239 ENNQHKMTLPLFTFHD 254
[49][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 316 bits (810), Expect = 8e-85
Identities = 153/197 (77%), Positives = 172/197 (87%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KS+N+PH+YS IAGIQESVHEILMN EIVLRSNLYGT +A ICV+GPGY+TA+
Sbjct: 60 TCITRVKSKNVPHEYSTIAGIQESVHEILMNFKEIVLRSNLYGTCDASICVRGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTEPIDLCI L+IERNRGY +KM +N +D SYPIDAVFMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYG+GNEK EILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEET L
Sbjct: 180 RNANHSIHSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPL 239
Query: 62 ENNQHQVTLPFFPFHNR 12
E+N H V L FH++
Sbjct: 240 EDNHHTVPLSPLTFHDK 256
[50][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 315 bits (808), Expect = 1e-84
Identities = 154/201 (76%), Positives = 175/201 (87%), Gaps = 2/201 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQES+HEILMNL +IVLRSNLYGTR+A IC +GPGY+TAR
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESIHEILMNLKQIVLRSNLYGTRDASICFKGPGYVTAR 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDA--VFM 249
DIILPP+VEI+DNTQHIA LTEPI+LCIEL+IER RGY K +N +D SY ID VFM
Sbjct: 120 DIILPPSVEIVDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFM 179
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV +AN+SIHSY N NEKQEILFLEIWTNGSLTPKEAL++A+RNLI+LFIPFLH EEE F
Sbjct: 180 PVIHANYSIHSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENF 239
Query: 68 YLENNQHQVTLPFFPFHNRLV 6
+ ENNQH+VTLP F FH+RLV
Sbjct: 240 HFENNQHKVTLPLFAFHDRLV 260
[51][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 315 bits (807), Expect = 2e-84
Identities = 148/200 (74%), Positives = 173/200 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK + +PH+YS I GI+ES+HEI MNL EIVLRSNLYGTRNA ICV+GP Y+TA+
Sbjct: 60 TCITRAKLDKVPHEYSTIVGIEESIHEIFMNLKEIVLRSNLYGTRNASICVRGPRYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA+LTEPIDLCIEL+I+R+RGY +K N +++ SYPIDAV MPV
Sbjct: 120 DIISPPSVEIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E+N ++ +PFF FH+ L N
Sbjct: 240 EDNPNRFNIPFFTFHDGLAN 259
[52][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 315 bits (806), Expect = 2e-84
Identities = 152/199 (76%), Positives = 172/199 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRS YGT +A ICV+GPG +TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSTFYGTCDASICVRGPGGVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP VEI+D TQHIA LTEPIDL IEL++ERNRGY +K NNF+D SYPID VFMPV
Sbjct: 120 DIISPPYVEIVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFL+ E+E F+L
Sbjct: 180 RNVNHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHL 239
Query: 62 ENNQHQVTLPFFPFHNRLV 6
E+NQ +VTLP F FH+RL+
Sbjct: 240 EDNQDRVTLPLFLFHDRLI 258
[53][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 315 bits (806), Expect = 2e-84
Identities = 153/198 (77%), Positives = 172/198 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AKSE IPH+YS I GI+ESVHEILMNL EIVLRSNLYGT +A ICV+GP ITA+
Sbjct: 60 TCITHAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTCDASICVKGPINITAK 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA+LTEP DLCI L+IERNRGY +K N ++ SYPIDAVFMPV
Sbjct: 120 DIISPPSVEIVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIIL 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
E+NQ++VTLPFF FH+ L
Sbjct: 240 EDNQNRVTLPFFTFHDGL 257
[54][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 313 bits (803), Expect = 5e-84
Identities = 149/200 (74%), Positives = 174/200 (87%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE +P++Y I GI+ESVHEILMNL EIVLRS+LYGTR+A ICV+GP Y+TA+
Sbjct: 60 TCITRVKSEKVPNEYYTIVGIEESVHEILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV MPV
Sbjct: 120 DIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E+N ++ T+P F FH+RL N
Sbjct: 240 EDNPNRFTVPLFTFHDRLAN 259
[55][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 312 bits (800), Expect = 1e-83
Identities = 154/198 (77%), Positives = 169/198 (85%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR A IC +GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+DNTQHIA L EPIDLCI L+IERNRGY + SYPIDAVFMPV
Sbjct: 120 DIISPPSVEIVDNTQHIARLMEPIDLCIGLQIERNRGY---------NGSYPIDAVFMPV 170
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNG+E+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +L
Sbjct: 171 RNANHSIHSYGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHL 230
Query: 62 ENNQHQVTLPFFPFHNRL 9
E NQH+ TLP FH+RL
Sbjct: 231 EYNQHKGTLPPLTFHDRL 248
[56][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 312 bits (799), Expect = 1e-83
Identities = 151/200 (75%), Positives = 173/200 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE +PH+YS I GI+ESVHEILMNL EIVLRSNLYGTR A ICV+GP ITA
Sbjct: 60 TCITRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTREASICVKGPKTITAE 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILP +VEI+D TQHIATLTEP+DL I L+I+R+RGY ++ +NN +D SYPIDAVFMPV
Sbjct: 120 DIILPASVEIVDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSI+SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ L
Sbjct: 180 RNANHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+ + TLP F FH++LVN
Sbjct: 240 EENKSRFTLPLFTFHDKLVN 259
[57][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 311 bits (797), Expect = 3e-83
Identities = 152/201 (75%), Positives = 176/201 (87%), Gaps = 3/201 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKS+ IPH+YS + GIQESVH+ILMNL EIVLRSNLYGT +A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSKKIPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMP 246
DIILPP VE++DNTQHIA+LTEPI+L I L+IER+RGY +K +NNF+D SYPIDAVFMP
Sbjct: 120 DIILPPYVEVVDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMP 179
Query: 245 VENANHSIHSY--GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
+ NANHSIHSY GNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 180 IRNANHSIHSYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEEN 239
Query: 71 FYLENNQHQVTLPFFPFHNRL 9
+L +NQH V LP F FH+ L
Sbjct: 240 LHLADNQHMVPLPPFTFHDNL 260
[58][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 311 bits (797), Expect = 3e-83
Identities = 151/197 (76%), Positives = 172/197 (87%), Gaps = 1/197 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA+LTEP+D CI L+IE NRGY +K NN + SYPIDAVFMPV
Sbjct: 120 DIISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNE QEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNL 239
Query: 62 ENNQ-HQVTLPFFPFHN 15
++NQ + VTLPFF FH+
Sbjct: 240 KDNQKNGVTLPFFTFHD 256
[59][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 311 bits (796), Expect = 3e-83
Identities = 146/200 (73%), Positives = 173/200 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE +PH+YS I GI+ESVHEILMNL EIV RS+LYGTR A ICV+GP Y+TA+
Sbjct: 60 TCITRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVFRSHLYGTRGASICVRGPRYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+V+I+D TQ+IA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV MPV
Sbjct: 120 DIISPPSVKIVDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGS TPKEAL++ASRNLI+LF+PFLH EE+ +
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINV 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E+NQ++ T P F FH+ L N
Sbjct: 240 EDNQNRATAPLFTFHDGLTN 259
[60][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 311 bits (796), Expect = 3e-83
Identities = 150/202 (74%), Positives = 177/202 (87%), Gaps = 2/202 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE +PH+YS I GI+ESVHEILMNL EIVL+SNLYGTR+A ICV+GP Y+TA+
Sbjct: 60 TCITRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA+LTEPI+LCIEL+IER+RGY +K NN++D SYPIDAV MPV
Sbjct: 120 DIISPPSVEIVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY- 66
NANHSIHSYG+GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ +
Sbjct: 180 RNANHSIHSYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHL 239
Query: 65 -LENNQHQVTLPFFPFHNRLVN 3
LE+NQ++ T+ F H+RL N
Sbjct: 240 NLEDNQNRFTVSPFTLHDRLGN 261
[61][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 310 bits (795), Expect = 4e-83
Identities = 149/200 (74%), Positives = 173/200 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE +PH+YS IAGI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GP +TA+
Sbjct: 60 TCITRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VE++D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV
Sbjct: 120 DIISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 180 RNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E NQ++ T+P F F +RL N
Sbjct: 240 EENQNRFTVPPFTFPDRLAN 259
[62][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 310 bits (795), Expect = 4e-83
Identities = 149/200 (74%), Positives = 173/200 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE +PH+YS IAGI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GP +TA+
Sbjct: 60 TCITRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VE++D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV
Sbjct: 120 DIISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE
Sbjct: 180 RNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E NQ++ T+P F F +RL N
Sbjct: 240 EENQNRFTVPPFTFPDRLAN 259
[63][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 310 bits (793), Expect = 7e-83
Identities = 149/200 (74%), Positives = 173/200 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE +PH+YS I GI+ESVHEIL+NL EIVLRSNLYG R+A ICV+GP Y+TA+
Sbjct: 60 TCITRAKSERVPHEYSTIIGIEESVHEILLNLKEIVLRSNLYGVRDASICVRGPRYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D TQHIA LTEPIDL IEL+I+R+RGY ++ +NN +D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ TLPF F +RL N
Sbjct: 240 EENKNRFTLPFLTFQDRLTN 259
[64][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 308 bits (788), Expect = 3e-82
Identities = 145/200 (72%), Positives = 172/200 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKS+ +PH+YS I GI+ESVHEILMNL +IV RS+LYGT +A ICV+GP ++TA+
Sbjct: 60 TCITRAKSDKVPHEYSTIVGIEESVHEILMNLKKIVFRSDLYGTLDASICVRGPRHVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA LTEP+DLCIELKIER RGY ++ NN++D SYPIDAV MPV
Sbjct: 120 DIISPPSVEIVDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ +
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINI 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E+N + T+PFF FH+ L N
Sbjct: 240 EDNLKRATVPFFTFHDGLDN 259
[65][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 307 bits (787), Expect = 4e-82
Identities = 149/193 (77%), Positives = 168/193 (87%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE +PH+YS + GIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSEKLPHEYSTLVGIQESVHEILMNLKEIVLRSNLYGTCDAAICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP VEIIDNTQHIA+LTEPI+LCI L+IERNRGY +K + NF+D SYPIDAVFMPV
Sbjct: 120 DIISPPYVEIIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N NHSI+SYG GN+K EILFLEIWTNGSLTPKEALH+A+RNLI+LFIPFLH EEE L
Sbjct: 180 RNVNHSIYSYGTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDL 239
Query: 62 ENNQHQVTLPFFP 24
E+NQH LPF P
Sbjct: 240 EDNQHM--LPFRP 250
[66][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 306 bits (785), Expect = 6e-82
Identities = 147/200 (73%), Positives = 169/200 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE + H+YS I GI+ESVHEIL+NL EI+LRSNLYG +A ICV+GP Y+TA+
Sbjct: 60 TCITRAKSEKVAHEYSTIVGIEESVHEILLNLKEIILRSNLYGVIDASICVRGPRYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP VEI+D TQHIA LTEPIDLCIEL+I+R+RGY +K +NN +D SYPIDAV MPV
Sbjct: 120 DIISPPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ LP F F NRL N
Sbjct: 240 EENKNRFPLPLFTFQNRLTN 259
[67][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 306 bits (785), Expect = 6e-82
Identities = 147/199 (73%), Positives = 170/199 (85%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE IPH+YS I GI+ESVHEI MNL EIVL+SN+YGT++A I +GPGYITA+
Sbjct: 60 TCITRVKSEKIPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGTQDASISFKGPGYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DN QHIA +TEP++LCIELKIERNRGY +K NF+D SY IDA FMPV
Sbjct: 120 DIILPPSVEIVDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SIHSY NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI+LFIPFLH EEE F L
Sbjct: 180 RNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNL 239
Query: 62 ENNQHQVTLPFFPFHNRLV 6
E +H+VTLP F FH+ LV
Sbjct: 240 EKKKHKVTLPLFTFHDILV 258
[68][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 306 bits (785), Expect = 6e-82
Identities = 147/200 (73%), Positives = 169/200 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK + + H+YS I GI+ESVHEILMNL EIVLRSNLYGT +A ICV+GP +TA+
Sbjct: 60 TCITRAKFDKVTHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTLDASICVRGPRSVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA LTEPIDLCI L+IER+RGY LK NN++D SYPID VFMPV
Sbjct: 120 DIISPPSVEIVDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNG EKQEILFLEIWTNGSLTPKEAL++ASRNLINLFIPFLH EE+ L
Sbjct: 180 RNANHSIHSYGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILL 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E++++ T+P F FHN L N
Sbjct: 240 EDSENISTVPLFTFHNELAN 259
[69][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 304 bits (779), Expect = 3e-81
Identities = 146/199 (73%), Positives = 168/199 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT KSE IPH+YS I GI+ESVHEI MNL EIVL+SN+YG ++A I +GPGYITA+
Sbjct: 60 TCITCVKSEKIPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGIQDASISFKGPGYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+DN QHIA +TEP+ LCIELKIERNRGY +K NF+D SY IDA FMPV
Sbjct: 120 DIILPPSVEIVDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SIHSY NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI LFIPFLH EE+ F+L
Sbjct: 180 RNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHL 239
Query: 62 ENNQHQVTLPFFPFHNRLV 6
E NQH+VTLP F FH+ LV
Sbjct: 240 EKNQHKVTLPLFTFHDILV 258
[70][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 303 bits (776), Expect = 7e-81
Identities = 142/196 (72%), Positives = 170/196 (86%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE +PH++S I GI+ESVHEI+MNL EIVLRSNLYGT +A IC++GP Y+TA+
Sbjct: 60 TCITRVKSEKVPHEFSTIVGIEESVHEIVMNLKEIVLRSNLYGTLDASICIRGPRYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D TQHIA LTE +DLCI+L+IER+RGYS+K +N ED SYPIDA+FMPV
Sbjct: 120 DIILPPSVEIVDATQHIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHS+HSYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +L
Sbjct: 180 RNANHSVHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHL 239
Query: 62 ENNQHQVTLPFFPFHN 15
E+N + V L F FH+
Sbjct: 240 EDNANGVPLALFTFHD 255
[71][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 303 bits (776), Expect = 7e-81
Identities = 146/198 (73%), Positives = 167/198 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE I H+YS I GIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA+
Sbjct: 60 TCITRAKSEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
+IILPP+V I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV
Sbjct: 120 NIILPPSVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 180 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 239
Query: 62 ENNQHQVTLPFFPFHNRL 9
ENN+H+VTLP F H+ L
Sbjct: 240 ENNEHKVTLPLFTCHDLL 257
[72][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 301 bits (772), Expect = 2e-80
Identities = 151/198 (76%), Positives = 165/198 (83%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSEN+PH+YS IAGIQESV EILMNL EIVLRSNLYGT A IC +GPGY+TA+
Sbjct: 45 TCITRVKSENVPHEYSTIAGIQESVPEILMNLKEIVLRSNLYGTCGASICARGPGYVTAQ 104
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI DNTQHIA LTEPI CI L+IER+RGY +K + F+DRSYPIDAVFMPV
Sbjct: 105 DIILPPCVEIGDNTQHIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPV 164
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N NHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE L
Sbjct: 165 RNVNHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL 222
Query: 62 ENNQHQVTLPFFPFHNRL 9
ENNQ V+ F FH +L
Sbjct: 223 ENNQDTVSFSPFSFHEKL 240
[73][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 301 bits (770), Expect = 3e-80
Identities = 145/200 (72%), Positives = 168/200 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE +PH+YS + GI+ESVHEIL NL EIVLRSNLY R+A ICV+GP Y+TA+
Sbjct: 60 TCITRAKSEKVPHEYSTVVGIEESVHEILFNLKEIVLRSNLYEIRDASICVRGPRYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP VEI+D TQ+IA LTEPIDLCIEL+I+R+RGY +K N +D SYPIDAVFMPV
Sbjct: 120 DIISPPYVEIVDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ TLP F +RL N
Sbjct: 240 EENKNKFTLPPLTFQDRLSN 259
[74][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 300 bits (767), Expect = 8e-80
Identities = 148/198 (74%), Positives = 167/198 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK E I H+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+
Sbjct: 60 TCITRAKFEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIATLTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV
Sbjct: 120 DIILPPYVEIVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE L
Sbjct: 180 RNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNL 237
Query: 62 ENNQHQVTLPFFPFHNRL 9
E+NQH + LP F F+++L
Sbjct: 238 EDNQHMIPLPPFTFYDKL 255
[75][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 300 bits (767), Expect = 8e-80
Identities = 143/200 (71%), Positives = 167/200 (83%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRA SE +PH+YS I GI+ESVHEIL+NL EIVLRSN+YG R+A IC +GP Y+TA+
Sbjct: 60 TCITRANSEKVPHEYSTIIGIEESVHEILLNLKEIVLRSNIYGVRDASICARGPKYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA LTEPIDLCI L+I R+RGY K + N ++ SYPIDAV MPV
Sbjct: 120 DIISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ TLP F F +RL N
Sbjct: 240 KENKNRFTLPIFTFQDRLTN 259
[76][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 299 bits (765), Expect = 1e-79
Identities = 148/198 (74%), Positives = 168/198 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKS+ I H+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSDKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTYEASICVRGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE L
Sbjct: 180 RNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNL 237
Query: 62 ENNQHQVTLPFFPFHNRL 9
E+NQH V LP F F+++L
Sbjct: 238 EDNQHIVPLPPFTFYDKL 255
[77][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 298 bits (764), Expect = 2e-79
Identities = 148/198 (74%), Positives = 168/198 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE I H+Y+ I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSEKISHEYATIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV
Sbjct: 120 DIILPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE L
Sbjct: 180 RNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSL 237
Query: 62 ENNQHQVTLPFFPFHNRL 9
E+NQH V LP F F+++L
Sbjct: 238 EDNQHIVPLPPFTFYDKL 255
[78][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 298 bits (763), Expect = 2e-79
Identities = 145/200 (72%), Positives = 168/200 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE +PH+YS I GI+ESVHEI +NL EIVL NLYG R+A ICV+GP Y+TA+
Sbjct: 60 TCITRAKSEKVPHEYSTIVGIEESVHEIFINLKEIVL--NLYGVRDASICVRGPRYVTAQ 117
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA LTEPIDL IEL+I+R+RGY + +NN +D SYPIDAV MPV
Sbjct: 118 DIISPPSVEIVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPV 177
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +
Sbjct: 178 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHF 237
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ TLP F F NRL N
Sbjct: 238 EENKNRFTLPLFTFQNRLTN 257
[79][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 298 bits (762), Expect = 3e-79
Identities = 148/198 (74%), Positives = 167/198 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE I H+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+
Sbjct: 60 TCITRAKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV
Sbjct: 120 DIILPPYVEILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSY NGN +EILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH +EE L
Sbjct: 180 RNANHSIHSYENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNL 237
Query: 62 ENNQHQVTLPFFPFHNRL 9
E NQH V LP F F+++L
Sbjct: 238 EGNQHMVPLPPFTFYDKL 255
[80][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 296 bits (757), Expect = 1e-78
Identities = 142/200 (71%), Positives = 168/200 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRA SEN+ H+YS IAGI+ESVHEIL+NL +IVLRSNLYG RNA ICV+GP YITA+
Sbjct: 60 TCITRATSENVLHEYSTIAGIEESVHEILLNLKDIVLRSNLYGVRNASICVRGPKYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA LTEPI+LCIEL+I+R+RGY +K +N+ D SYPID V MPV
Sbjct: 120 DIISPPSVEIVDTTQHIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+L IPFLH EEE
Sbjct: 180 RNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ LP F F ++ N
Sbjct: 240 KENENRWNLPPFSFQDKFTN 259
[81][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 296 bits (757), Expect = 1e-78
Identities = 141/202 (69%), Positives = 170/202 (84%), Gaps = 2/202 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKS+ +PH+YS + GI+ESVHEILMNL ++V RS+LYGT +A ICV+GP ++TA+
Sbjct: 60 TCITRAKSDKVPHEYSTVVGIEESVHEILMNLKKMVFRSDLYGTLDASICVRGPRHVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA LTEP+DLCIELKIER RGY + NN++D SYPIDAV MPV
Sbjct: 120 DIISPPSVEIVDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-- 69
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINR 239
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
+E+N + ++PFF F + L N
Sbjct: 240 NMEDNLKRASVPFFAFDDGLDN 261
[82][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 292 bits (748), Expect = 1e-77
Identities = 145/202 (71%), Positives = 171/202 (84%), Gaps = 2/202 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKS+ IPH+YS I GI+ESVH+ILMNL EIVLRSNLYGT +A I V+GP +TA+
Sbjct: 60 TCITRAKSDKIPHEYSTIVGIEESVHQILMNLKEIVLRSNLYGTCDASIFVRGPRCVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSY--PIDAVFM 249
DII PP+V+++D TQHIA+LTEPIDLCI L+IER+RGY +K NN +D SY PI+AV M
Sbjct: 120 DIISPPSVKMVDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSM 179
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
PV NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+AS NLI+LFIPFLH EEE
Sbjct: 180 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDI 239
Query: 68 YLENNQHQVTLPFFPFHNRLVN 3
LE++ ++ TLPFF F ++L N
Sbjct: 240 NLEDSLNRGTLPFFTFQDKLAN 261
[83][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 289 bits (739), Expect = 1e-76
Identities = 148/194 (76%), Positives = 162/194 (83%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T ITR K N H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I +GPGY+TA
Sbjct: 60 TRITRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAE 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV
Sbjct: 120 DIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E L
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPL 237
Query: 62 ENNQHQVTLPFFPF 21
E+ H T+P PF
Sbjct: 238 EDADH--TIPLSPF 249
[84][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 289 bits (739), Expect = 1e-76
Identities = 148/194 (76%), Positives = 162/194 (83%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T ITR K N H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I +GPGY+TA
Sbjct: 60 TRITRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAE 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV
Sbjct: 120 DIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E L
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPL 237
Query: 62 ENNQHQVTLPFFPF 21
E+ H T+P PF
Sbjct: 238 EDADH--TIPLSPF 249
[85][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 288 bits (737), Expect = 2e-76
Identities = 146/194 (75%), Positives = 162/194 (83%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T ITR K N H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I ++GPGY+TA
Sbjct: 60 TRITRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAE 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VE++D+TQHIA L EPIDLCI LKIERNRGY LK NFED SYPIDAVFMPV
Sbjct: 120 DIILPPHVEVVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E +L
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHL 237
Query: 62 ENNQHQVTLPFFPF 21
E+ T+P PF
Sbjct: 238 EDADR--TIPLSPF 249
[86][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 288 bits (737), Expect = 2e-76
Identities = 144/198 (72%), Positives = 165/198 (83%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T ITR K H+YS IAGIQESVHEI MNL EIVLRSNLYGT +A I ++GPG++TA+
Sbjct: 60 TRITRVKFAKASHEYSTIAGIQESVHEIFMNLKEIVLRSNLYGTCDASISIKGPGHVTAK 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV
Sbjct: 120 DIILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +L
Sbjct: 180 RNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHL 237
Query: 62 ENNQHQVTLPFFPFHNRL 9
E+ H ++L F ++++
Sbjct: 238 EDADHTISLSPFTVYDKV 255
[87][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 288 bits (737), Expect = 2e-76
Identities = 138/198 (69%), Positives = 167/198 (84%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AKSE +PH+YS I GI+ESVHEILMNL EI++RS+LYGTR+A ICV+GP Y+TA+
Sbjct: 60 TCITCAKSERVPHEYSTIVGIEESVHEILMNLKEIIVRSDLYGTRDAFICVRGPKYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+V+I+D TQHIA++TEPI+ CI L+IERNRGY + +N +D SYPIDAV MPV
Sbjct: 120 DIISPPSVKIVDTTQHIASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSMPV 177
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NAN+SI YGN NEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +L
Sbjct: 178 RNANYSIQCYGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHL 237
Query: 62 ENNQHQVTLPFFPFHNRL 9
+++Q+ T PFFPFH L
Sbjct: 238 DDDQNIFTAPFFPFHEGL 255
[88][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 285 bits (728), Expect = 3e-75
Identities = 140/200 (70%), Positives = 162/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKS +PH+YS I GI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKSGKVPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP+VEI+D TQHIA LTEPIDLCIEL+I+R+RGY + N +D SYPIDAV MPV
Sbjct: 120 DIISPPSVEIVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI+S GN NEK EILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE
Sbjct: 180 RNVNYSIYSCGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ TLP F RL N
Sbjct: 240 EENKNRFTLPLLTFQKRLTN 259
[89][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 284 bits (726), Expect = 4e-75
Identities = 138/200 (69%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[90][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 283 bits (724), Expect = 7e-75
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[91][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 283 bits (723), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[92][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 283 bits (723), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[93][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 283 bits (723), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[94][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 283 bits (723), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[95][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 283 bits (723), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[96][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 283 bits (723), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[97][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 283 bits (723), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[98][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 283 bits (723), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[99][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 283 bits (723), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[100][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 282 bits (722), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[101][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 282 bits (722), Expect = 1e-74
Identities = 136/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A IC++GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[102][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 282 bits (722), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCI RAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCIARAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D +Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[103][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 282 bits (722), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[104][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 282 bits (722), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNLNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[105][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 282 bits (722), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFKKRLTN 259
[106][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 282 bits (722), Expect = 1e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[107][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 282 bits (721), Expect = 2e-74
Identities = 137/200 (68%), Positives = 162/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK +PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[108][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 282 bits (721), Expect = 2e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPKYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[109][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 281 bits (720), Expect = 2e-74
Identities = 137/200 (68%), Positives = 162/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK +PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[110][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 281 bits (720), Expect = 2e-74
Identities = 137/200 (68%), Positives = 162/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK +PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[111][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 281 bits (719), Expect = 3e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPPFTFQKRLTN 259
[112][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 281 bits (718), Expect = 4e-74
Identities = 137/200 (68%), Positives = 163/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPPFTFKKRLTN 259
[113][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 281 bits (718), Expect = 4e-74
Identities = 136/200 (68%), Positives = 162/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VE +D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[114][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 281 bits (718), Expect = 4e-74
Identities = 136/199 (68%), Positives = 162/199 (81%)
Frame = -3
Query: 599 CITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 420
CITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+D
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 419 IILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVE 240
IILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 239 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLE 60
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 59 NNQHQVTLPFFPFHNRLVN 3
N+++ T P F F RL N
Sbjct: 241 ENKNRFTPPLFTFQKRLTN 259
[115][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 280 bits (717), Expect = 5e-74
Identities = 135/200 (67%), Positives = 161/200 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D TQ IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFMPV
Sbjct: 120 DIILPPSVEIVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N++++T P F R N
Sbjct: 240 EENKNRLTPPLLTFQKRFTN 259
[116][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 280 bits (717), Expect = 5e-74
Identities = 136/200 (68%), Positives = 162/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA L EPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[117][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 280 bits (717), Expect = 5e-74
Identities = 136/200 (68%), Positives = 162/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDA MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[118][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 280 bits (717), Expect = 5e-74
Identities = 136/200 (68%), Positives = 162/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCI RAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCIARAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFKKRLTN 259
[119][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 280 bits (716), Expect = 6e-74
Identities = 138/198 (69%), Positives = 162/198 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE H+YS I GIQESVHEILMNL EIVLRSNLYGT +A IC++GP ++TA+
Sbjct: 60 TCITRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYGTCDASICIKGPRHVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP V+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D YPIDA+FMPV
Sbjct: 120 DIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+A+R LI+ FIPF H+EEE YL
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYL 237
Query: 62 ENNQHQVTLPFFPFHNRL 9
+ +H + L F+N++
Sbjct: 238 ADAEHTIPLSSLIFYNKV 255
[120][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 280 bits (715), Expect = 8e-74
Identities = 134/200 (67%), Positives = 161/200 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFWNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D TQ IA L EP+D CIEL+I+R+RGY ++ N +D SYPIDAVFMPV
Sbjct: 120 DIILPPSVEIVDTTQPIANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N++++T P F R N
Sbjct: 240 EENKNRLTPPLLTFQKRFTN 259
[121][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 280 bits (715), Expect = 8e-74
Identities = 143/194 (73%), Positives = 160/194 (82%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T ITR K N H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I ++GPGY+TA
Sbjct: 60 TRITRVKFANTSHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAE 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+D+TQHIA LTEPI+ I LKIERN GY +K NFED SYPIDA+FMPV
Sbjct: 120 DIILPPHVEIVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NANHSI+SY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +L
Sbjct: 180 RNANHSINSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHL 237
Query: 62 ENNQHQVTLPFFPF 21
E+ H T+P PF
Sbjct: 238 EDADH--TIPLSPF 249
[122][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 279 bits (714), Expect = 1e-73
Identities = 137/200 (68%), Positives = 161/200 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F RL N
Sbjct: 240 EENKNRFTPPLLTFQKRLTN 259
[123][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 279 bits (713), Expect = 1e-73
Identities = 135/200 (67%), Positives = 162/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A IC++GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNG EK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[124][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 278 bits (712), Expect = 2e-73
Identities = 134/200 (67%), Positives = 160/200 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D TQ IA L EP+D CIEL+I+R+R Y ++ N +D SYPIDAVFMPV
Sbjct: 120 DIILPPSVEIVDTTQPIANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N++++T P F R N
Sbjct: 240 EENKNRLTPPLLTFQKRFTN 259
[125][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 278 bits (711), Expect = 2e-73
Identities = 135/200 (67%), Positives = 162/200 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP ITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILVNLKEIVLRSNLYGVRDASICVKGPRCITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VE++D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV
Sbjct: 120 DIILPPSVEVVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[126][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 277 bits (709), Expect = 4e-73
Identities = 136/191 (71%), Positives = 161/191 (84%), Gaps = 3/191 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK E IPH+Y+ + GIQESV+EI+MNL EIVLRSNLYGTR+A ICV+GP +TA+
Sbjct: 60 TCITYAKFEKIPHEYTTLVGIQESVYEIVMNLKEIVLRSNLYGTRDASICVRGPRDVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVF 252
DIILPP+V I+DNTQHI TLTEPID C+ L+IERNRGYS+K+ +N+ +DR YPIDAVF
Sbjct: 120 DIILPPSVAIVDNTQHIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVF 179
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
MPV+N NHSIH+Y NG+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE
Sbjct: 180 MPVKNVNHSIHAYENGS--HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEN 237
Query: 71 FYLENNQHQVT 39
+LENNQ+Q T
Sbjct: 238 SHLENNQNQHT 248
[127][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 277 bits (708), Expect = 5e-73
Identities = 135/200 (67%), Positives = 161/200 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M V
Sbjct: 120 DIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F RL N
Sbjct: 240 EENKNRFTPPLLTFQKRLTN 259
[128][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 276 bits (707), Expect = 7e-73
Identities = 133/200 (66%), Positives = 160/200 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFMPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E +++++T P F R N
Sbjct: 240 EESKNRLTPPLLTFQKRFTN 259
[129][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 276 bits (706), Expect = 9e-73
Identities = 135/200 (67%), Positives = 160/200 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK + PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSXPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPI V MPV
Sbjct: 120 DIILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F F RL N
Sbjct: 240 EENKNRFTPPLFTFQKRLTN 259
[130][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 275 bits (704), Expect = 2e-72
Identities = 136/198 (68%), Positives = 162/198 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE H+YS I GIQESVHEILMNL EIVLRSNLY + +A IC++GP ++TA+
Sbjct: 60 TCITRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP V+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FMPV
Sbjct: 120 DIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE YL
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYL 237
Query: 62 ENNQHQVTLPFFPFHNRL 9
+ +H + LP F+N++
Sbjct: 238 ADAKHTIXLPPLIFYNKV 255
[131][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 275 bits (704), Expect = 2e-72
Identities = 136/198 (68%), Positives = 162/198 (81%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR KSE H+YS I GIQESVHEILMNL EIVLRSNLY + +A IC++GP ++TA+
Sbjct: 60 TCITRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP V+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FMPV
Sbjct: 120 DIILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE YL
Sbjct: 180 QNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYL 237
Query: 62 ENNQHQVTLPFFPFHNRL 9
+ +H + LP F+N++
Sbjct: 238 ADAKHTIPLPPLIFYNKV 255
[132][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 275 bits (703), Expect = 2e-72
Identities = 135/200 (67%), Positives = 160/200 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 60 TCITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
E N+++ T P F +L N
Sbjct: 240 EENKNRFTPPLLTFQKKLTN 259
[133][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 273 bits (699), Expect = 6e-72
Identities = 134/197 (68%), Positives = 160/197 (81%)
Frame = -3
Query: 593 TRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDII 414
TRAK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A I V+GP YITA+DII
Sbjct: 68 TRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASISVKGPRYITAQDII 127
Query: 413 LPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENA 234
LPP+VEI+D +Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N
Sbjct: 128 LPPSVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNV 187
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENN 54
N+SI S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N
Sbjct: 188 NYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN 247
Query: 53 QHQVTLPFFPFHNRLVN 3
+++ T P F F RL N
Sbjct: 248 KNRFTPPLFTFQKRLTN 264
[134][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 271 bits (693), Expect = 3e-71
Identities = 139/198 (70%), Positives = 159/198 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T ITRAK E +PH+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+
Sbjct: 60 TAITRAKFEKVPHEYSTIRGIQESVHEILMNLKEIVLRSNLYGTCEASICVKGPGYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DII PP VEI+DNTQHIA+LTEPI+L I L+IE+NR LK N F+D SY I AV MPV
Sbjct: 120 DIISPPYVEIVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+ N+SIHS GNG KQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EE L
Sbjct: 180 RHMNYSIHSSGNG--KQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEGN--L 235
Query: 62 ENNQHQVTLPFFPFHNRL 9
ENNQ ++ P F F+++L
Sbjct: 236 ENNQDRIPFPSFTFYDKL 253
[135][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 271 bits (692), Expect = 4e-71
Identities = 134/200 (67%), Positives = 157/200 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG RNA ICV+GP YITA+
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQ 99
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 100 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 159
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 160 RNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ NQ++ T P F RL N
Sbjct: 220 QENQNRFTSPLLSFQKRLTN 239
[136][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 269 bits (688), Expect = 1e-70
Identities = 133/200 (66%), Positives = 157/200 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG RNA ICV+GP YITA+
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQ 99
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 100 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 159
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 160 RNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 220 QENKNRFTSPLLSFQKRLTN 239
[137][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 269 bits (688), Expect = 1e-70
Identities = 136/191 (71%), Positives = 157/191 (82%), Gaps = 3/191 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK E IPH+Y+ I GIQES++EILMNL EIVLRSNL GTR+A ICV+GP +TA+
Sbjct: 60 TCITHAKFEKIPHEYTTIVGIQESIYEILMNLKEIVLRSNLDGTRDASICVRGPRDVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK--MSNNF-EDRSYPIDAVF 252
DIILP + I+DNTQHI TLTEPID CI L+I+RNRGYS K M NF +DR YPIDAVF
Sbjct: 120 DIILPNSAAIVDNTQHIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVF 179
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
+PV+N NHSIHSY NG+ E+LFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE
Sbjct: 180 LPVKNVNHSIHSYENGS--HEMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEN 237
Query: 71 FYLENNQHQVT 39
F+ ENNQ++ T
Sbjct: 238 FHFENNQNEHT 248
[138][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 268 bits (686), Expect = 2e-70
Identities = 133/200 (66%), Positives = 157/200 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG RNA ICV+GP YITA+
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQ 99
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 100 DIILPPSVEIVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 159
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 160 RNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 220 QENKNRFTSPLLSFQKRLTN 239
[139][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 267 bits (683), Expect = 4e-70
Identities = 132/200 (66%), Positives = 158/200 (79%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQ 99
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP+D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 100 DIILPPSVEIVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPV 159
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 160 RNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 220 QENKNRFTSPLLSFQKRLTN 239
[140][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 266 bits (681), Expect = 7e-70
Identities = 130/189 (68%), Positives = 158/189 (83%), Gaps = 3/189 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT A+ E IPH+Y+ GIQESV+EI+MNL EIVLRS+LYGTR+A ICV+GP +TA+
Sbjct: 60 TCITHAQFEKIPHEYTTRVGIQESVYEIVMNLKEIVLRSSLYGTRDASICVRGPRDVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVF 252
DIILPP+V I+DNTQHI TLTEPI+ C+ L+IERNRGYSL++ +N+ ++R YPIDAVF
Sbjct: 120 DIILPPSVSIVDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVF 179
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
MPV+N NHSIHSY NG+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE
Sbjct: 180 MPVKNVNHSIHSYENGS--HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEK 237
Query: 71 FYLENNQHQ 45
+ ENNQ++
Sbjct: 238 PHFENNQNE 246
[141][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 266 bits (681), Expect = 7e-70
Identities = 132/194 (68%), Positives = 162/194 (83%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR +N H+YS IAGIQESVH+ILMNL EIVL+SNLYGT +A + ++GP Y+TA+
Sbjct: 60 TCITRVTFQNASHEYSIIAGIQESVHDILMNLKEIVLKSNLYGTCDASLYIKGPRYVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP VEI+D+TQHIA+LTEPI+LCI LKIERNRGY +K F++ +Y +DAVFMPV
Sbjct: 120 DIILPPHVEIVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N NHSI+SY GNEK+EILFLEIWTNGSLTPKEALH+A++NL++LFIPFL +EEE L
Sbjct: 180 LNVNHSIYSY--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNL 237
Query: 62 ENNQHQVTLPFFPF 21
E+ +HQ+ PF PF
Sbjct: 238 EDAEHQI--PFSPF 249
[142][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 266 bits (679), Expect = 1e-69
Identities = 131/200 (65%), Positives = 156/200 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+
Sbjct: 148 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 207
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 208 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 267
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 268 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 327
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 328 QENKNRFTSPLLSFQKRLTN 347
[143][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 266 bits (679), Expect = 1e-69
Identities = 131/200 (65%), Positives = 156/200 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+
Sbjct: 60 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 240 QENKNRFTSPLLSFQKRLTN 259
[144][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 266 bits (679), Expect = 1e-69
Identities = 131/200 (65%), Positives = 156/200 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+
Sbjct: 169 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 228
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 229 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 288
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 289 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 348
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 349 QENKNRFTSPLLSFQKRLTN 368
[145][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 266 bits (679), Expect = 1e-69
Identities = 131/200 (65%), Positives = 156/200 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 99
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 100 DIILPPSVEIVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 159
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 160 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 220 QENKNRFTSPLLSFQKRLTN 239
[146][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 266 bits (679), Expect = 1e-69
Identities = 131/200 (65%), Positives = 156/200 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+
Sbjct: 60 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 120 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 240 QENKNRFTSPLLSFQKRLTN 259
[147][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 265 bits (677), Expect = 2e-69
Identities = 138/195 (70%), Positives = 159/195 (81%), Gaps = 7/195 (3%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK IPH+Y+ +AGI+ES++EILMNL EIVLRSNLYGTR+A ICV+GP +TA+
Sbjct: 60 TCITHAKFAKIPHEYTTMAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNF-EDRSY--PID 261
DIILPP+ I+DNTQHI TLTEPID C+ELKIER RGYS+K+ +N F D Y PID
Sbjct: 120 DIILPPSTAIVDNTQHIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPID 179
Query: 260 AVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
AVFMPV N NHSI+SY G+ +EILFLEIWTNGSLTPKEAL +ASR LINLFIPFLH E
Sbjct: 180 AVFMPVRNVNHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAE 237
Query: 80 EETFY-LENNQHQVT 39
EE FY LENNQ+Q T
Sbjct: 238 EENFYLLENNQNQHT 252
[148][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 265 bits (676), Expect = 3e-69
Identities = 130/200 (65%), Positives = 156/200 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+
Sbjct: 169 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 228
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 229 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 288
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI + GNGN + EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 289 RNVNYSIFACGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 348
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 349 QENKNRFTSPLLSFQKRLTN 368
[149][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 263 bits (673), Expect = 6e-69
Identities = 130/200 (65%), Positives = 155/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+
Sbjct: 40 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 99
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 100 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 159
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SI + GNGN K EILFLEIWTNGSLTP EAL++ASRNLI+LF+PFLH EEE
Sbjct: 160 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRF 219
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N+++ T P F RL N
Sbjct: 220 QENKNRFTSPLLSFQKRLTN 239
[150][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 263 bits (673), Expect = 6e-69
Identities = 134/193 (69%), Positives = 155/193 (80%), Gaps = 5/193 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK IPH+Y+ IAGI+ES++EILMNL EIVLRSNLYGTR+A ICV+GP +TA+
Sbjct: 60 TCITHAKFAKIPHEYTTIAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFE----DRSYPIDAV 255
DIILPP+ I+DNTQHI TLTEPID C+ LKIER RGYS+K+ + D +YPIDAV
Sbjct: 120 DIILPPSTAIVDNTQHIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAV 179
Query: 254 FMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
FMPV N NHSIHSY G+ E+LFLEIWTNGSLTPKEAL +ASR LINL +PFLH EEE
Sbjct: 180 FMPVRNVNHSIHSYERGS--HEMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEE 237
Query: 74 TFYL-ENNQHQVT 39
FYL ENNQ+Q T
Sbjct: 238 NFYLVENNQNQDT 250
[151][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 260 bits (664), Expect = 7e-68
Identities = 126/191 (65%), Positives = 155/191 (81%), Gaps = 3/191 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK + IPH+Y+ + GIQES++EILMNL EIVLRS+LYGTR+A ICV+GP +TA+
Sbjct: 60 TCITHAKFDKIPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVF 252
DIILP + I+DNTQHI T+TEPID C+ L+IERNRGY ++ ++N +DR YPID+VF
Sbjct: 120 DIILPTSATIVDNTQHIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVF 179
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
MPV+N NHSIHSY NG +LFLEIWTNGSLTPKEAL +ASR L NLFIPFLH EE+
Sbjct: 180 MPVKNVNHSIHSYENG--IHAMLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQN 237
Query: 71 FYLENNQHQVT 39
F+ ENNQ++ T
Sbjct: 238 FHFENNQNEHT 248
[152][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 258 bits (660), Expect = 2e-67
Identities = 128/191 (67%), Positives = 153/191 (80%), Gaps = 3/191 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK + IPH+Y+ + GIQES++EILMNL EIVLRS+LYGTR+A ICV+GP +T++
Sbjct: 60 TCITHAKFDKIPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTSQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVF 252
DIILP I+DNTQHI TLTEPID C+ L+IERNRGY ++ +SN +DR YPIDAVF
Sbjct: 120 DIILPTFATIVDNTQHIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVF 179
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
MPV+N NHSIHSY NG +LFLEIWTNGSLTPKEAL ASR LINLFIPFLH EE+
Sbjct: 180 MPVKNVNHSIHSYENG--IHAMLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQN 237
Query: 71 FYLENNQHQVT 39
+ ENNQ++ T
Sbjct: 238 CHFENNQNEHT 248
[153][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 253 bits (645), Expect = 1e-65
Identities = 124/176 (70%), Positives = 145/176 (82%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+
Sbjct: 169 TCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQ 228
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV
Sbjct: 229 DIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPV 288
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N N+SI + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 289 RNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEE 344
[154][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 251 bits (642), Expect = 2e-65
Identities = 125/200 (62%), Positives = 156/200 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGVREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I+L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ +P FP + L +
Sbjct: 240 MNNRKGSNMPPFPLSHVLTD 259
[155][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 251 bits (641), Expect = 3e-65
Identities = 124/196 (63%), Positives = 153/196 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK E + H+YS I GI+ESVH+IL+NL EIVLRS+ YGTR A IC+ GP +TA+
Sbjct: 60 TCITHAKLEKVTHEYSAIIGIEESVHDILINLKEIVLRSDPYGTREASICIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V IID TQHIA+LT+ I I L IE++RGY ++ N++D +PIDAVFMPV
Sbjct: 120 DIILPPSVRIIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NAN+SIHSYGNGN+ QEILFLEIWTNGSL P+EAL++ASRNLI+LFIPFL EE+
Sbjct: 180 RNANYSIHSYGNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHN 15
+NQ+ +P F F N
Sbjct: 240 MDNQNGSNMPSFSFSN 255
[156][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 251 bits (640), Expect = 4e-65
Identities = 126/200 (63%), Positives = 155/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[157][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 250 bits (638), Expect = 7e-65
Identities = 126/200 (63%), Positives = 155/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[158][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 250 bits (638), Expect = 7e-65
Identities = 126/200 (63%), Positives = 155/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[159][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 250 bits (638), Expect = 7e-65
Identities = 126/200 (63%), Positives = 155/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[160][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 250 bits (638), Expect = 7e-65
Identities = 126/200 (63%), Positives = 155/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPKNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[161][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 250 bits (638), Expect = 7e-65
Identities = 126/200 (63%), Positives = 155/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[162][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 248 bits (634), Expect = 2e-64
Identities = 124/200 (62%), Positives = 154/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ +P FP + L +
Sbjct: 240 MNNRKGSNMPPFPLSHVLTD 259
[163][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 248 bits (634), Expect = 2e-64
Identities = 125/200 (62%), Positives = 154/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+ N+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDVNYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[164][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 248 bits (632), Expect = 3e-64
Identities = 125/200 (62%), Positives = 154/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
N + + FP + L +
Sbjct: 240 MNKKKGSNMLPFPLSHVLTD 259
[165][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 248 bits (632), Expect = 3e-64
Identities = 125/200 (62%), Positives = 154/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
N + + FP + L +
Sbjct: 240 MNKKKGSNMLPFPLSHVLTD 259
[166][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 248 bits (632), Expect = 3e-64
Identities = 125/200 (62%), Positives = 154/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
N + + FP + L +
Sbjct: 240 MNKKKGSNMLPFPLSHVLTD 259
[167][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 248 bits (632), Expect = 3e-64
Identities = 124/200 (62%), Positives = 152/200 (76%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A IC+ GP +TA+
Sbjct: 60 TCITHVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIRGASICIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL +ASR LI LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ +P FP + L +
Sbjct: 240 MNNRKGSNMPPFPLSHVLTD 259
[168][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 247 bits (630), Expect = 6e-64
Identities = 124/200 (62%), Positives = 154/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHLLTD 259
[169][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 247 bits (630), Expect = 6e-64
Identities = 124/200 (62%), Positives = 154/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHLLTD 259
[170][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 247 bits (630), Expect = 6e-64
Identities = 124/200 (62%), Positives = 154/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHLLTD 259
[171][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 247 bits (630), Expect = 6e-64
Identities = 124/200 (62%), Positives = 154/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHLLTD 259
[172][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 247 bits (630), Expect = 6e-64
Identities = 124/200 (62%), Positives = 154/200 (77%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHLLTD 259
[173][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 245 bits (625), Expect = 2e-63
Identities = 123/200 (61%), Positives = 153/200 (76%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[174][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 245 bits (625), Expect = 2e-63
Identities = 123/200 (61%), Positives = 153/200 (76%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[175][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 245 bits (625), Expect = 2e-63
Identities = 123/200 (61%), Positives = 153/200 (76%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[176][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 243 bits (621), Expect = 7e-63
Identities = 122/200 (61%), Positives = 152/200 (76%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+ N+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDVNYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[177][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 243 bits (621), Expect = 7e-63
Identities = 121/194 (62%), Positives = 150/194 (77%), Gaps = 1/194 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVTLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-Y 66
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+ FIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNIDG 239
Query: 65 LENNQHQVTLPFFP 24
+ N + +P FP
Sbjct: 240 INNRKGSSNMPPFP 253
[178][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 243 bits (620), Expect = 9e-63
Identities = 122/200 (61%), Positives = 152/200 (76%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+ ID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKTIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHVLTD 259
[179][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 242 bits (618), Expect = 1e-62
Identities = 122/200 (61%), Positives = 152/200 (76%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITR K ENI H+YS I GI+ESVH+ILMNL IVLRS+ YG A I + GP +TA+
Sbjct: 60 TCITRVKLENIKHEYSAIIGIEESVHDILMNLKXIVLRSDSYGIXEASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDG 239
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
NN+ + FP + L +
Sbjct: 240 MNNKKGSNMLPFPLSHLLTD 259
[180][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 242 bits (617), Expect = 2e-62
Identities = 120/194 (61%), Positives = 150/194 (77%), Gaps = 1/194 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT K +NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+
Sbjct: 60 TCITHVKLDNIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV
Sbjct: 120 DIILPPSVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-Y 66
+AN+SIHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+
Sbjct: 180 RDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDG 239
Query: 65 LENNQHQVTLPFFP 24
+ N + +P FP
Sbjct: 240 MNNRKGSSNMPPFP 253
[181][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 231 bits (588), Expect = 4e-59
Identities = 113/193 (58%), Positives = 151/193 (78%), Gaps = 1/193 (0%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT A+ + + H+YS I GIQESVH++L+NL EIVLRS+ Y T+ A I + GP +TA+
Sbjct: 60 TCITCAEFKRVTHEYSTILGIQESVHDVLINLGEIVLRSDSYETQKAFISILGPKKVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQ+IAT+T+ I L IELKIE++ GY ++ D ++P+DAVFMP+
Sbjct: 120 DIILPPSVKIIDTTQYIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPI 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-Y 66
N N+S+HS+ NGNE QEILFLEIWTNGS+TPKEAL++ASR+LINLFIPFLH E++ F Y
Sbjct: 180 RNVNYSVHSFENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKEFIY 239
Query: 65 LENNQHQVTLPFF 27
N ++ + +F
Sbjct: 240 GLKNTYESNMSYF 252
[182][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 228 bits (582), Expect = 2e-58
Identities = 114/194 (58%), Positives = 150/194 (77%), Gaps = 2/194 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK + + H+YS IAGIQESVH+IL+NL EIVLRSN Y T+ A I + GP +TA+
Sbjct: 60 TCITCAKFKKVTHEYSTIAGIQESVHDILINLKEIVLRSNSYETQKAFISILGPKKVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQ+IATLT+ I L IEL+IE++ GY ++ S D +PIDA+FMP+
Sbjct: 120 DIILPPSVKIIDTTQYIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPI 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY- 66
NAN+S+HS+ + N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 180 RNANYSVHSFEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEIIN 239
Query: 65 -LENNQHQVTLPFF 27
LEN + +F
Sbjct: 240 GLENKYESNNMSYF 253
[183][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 221 bits (562), Expect = 5e-56
Identities = 106/176 (60%), Positives = 142/176 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT A+S+ + H+YS I GIQES H+IL+NL EIVL+SN Y T+ A + + GP ITA+
Sbjct: 60 TCITCARSKKVTHEYSTIVGIQESAHDILINLKEIVLKSNSYETQKAFLSILGPKKITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQ+IAT+T+PI L IEL+I+++ GY + S D + IDA+FMP+
Sbjct: 120 DIILPPSVKIIDTTQYIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPI 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
NAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 180 RNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKK 235
[184][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 220 bits (560), Expect = 8e-56
Identities = 114/201 (56%), Positives = 148/201 (73%), Gaps = 3/201 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRS--NLYGTRNALICVQGPGYIT 429
TCITRAKSE + H+YS I GIQESV +IL+NL EIVL+S N T+ A + + GP +T
Sbjct: 61 TCITRAKSEKVTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVT 120
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDII PP+VE+ID TQ+IATLT+ I L IELKIE++ GY + S D + +DAVF
Sbjct: 121 ARDIIFPPSVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFT 180
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EET 72
P+ NAN+S+HS+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E EE
Sbjct: 181 PIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
Query: 71 FYLENNQHQVTLPFFPFHNRL 9
+ +N + + P N++
Sbjct: 241 MHDKNESNTLHFSSSPSENKM 261
[185][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 219 bits (559), Expect = 1e-55
Identities = 108/176 (61%), Positives = 142/176 (80%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT A + + H+YS I GIQESVH+IL+NL EIVL+SN T+ A I + GP ITA+
Sbjct: 60 TCITCAIFKKVTHEYSTIVGIQESVHDILINLKEIVLKSNSSETQKAFISILGPKKITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQ+IAT+T+PI L IEL+IE++ GY ++ S D +PIDA+FMP+
Sbjct: 120 DIILPPSVKIIDTTQYIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPI 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
NAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 180 RNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKK 235
[186][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 218 bits (556), Expect = 2e-55
Identities = 113/194 (58%), Positives = 139/194 (71%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK EN+ H+YS I GI+ESVH+I +NL IVL+S+ YG R A I GP +TA+
Sbjct: 60 TCITHAKFENMTHEYSAIMGIEESVHDISINLRGIVLQSDPYGIREASIYSVGPRDVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V IID TQHIA+L E I I +I ++RGY ++ NN D + DAV MPV
Sbjct: 120 DIILPPSVRIIDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPV 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NAN+SIHSYGNGNE QEILF EIWTNGSL P EAL++ASRNLI+LFIPF+ EE+
Sbjct: 180 RNANYSIHSYGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNIDG 239
Query: 62 ENNQHQVTLPFFPF 21
+N + + FPF
Sbjct: 240 IDNWNGYNMSLFPF 253
[187][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 218 bits (555), Expect = 3e-55
Identities = 114/195 (58%), Positives = 144/195 (73%), Gaps = 4/195 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRS--NLYGTRNALICVQGPGYIT 429
TCITRAKSE + H+YS I GIQESV +IL+NL EIVL+S N T+ A + + GP +T
Sbjct: 61 TCITRAKSEKVTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVT 120
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
ARDI+ PP+VE+ID TQ+IATLT+ I L IELKIE++ GY + S D + +DAVF
Sbjct: 121 ARDIVFPPSVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFT 180
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
P+ NAN+S+HS+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E+E
Sbjct: 181 PIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
Query: 68 Y--LENNQHQVTLPF 30
L N TL F
Sbjct: 241 MHGLGNKNESNTLHF 255
[188][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 216 bits (549), Expect = 1e-54
Identities = 112/203 (55%), Positives = 140/203 (68%), Gaps = 10/203 (4%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAK NI ++YS I GI+ES+HEILMNL EIVLRS+ YG R I V GP +TA+
Sbjct: 60 TCITRAKFHNISNEYSVIIGIEESIHEILMNLKEIVLRSDAYGIREGSIHVVGPKKVTAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---------- 273
DI+LPP+V IID TQHIA + + I L I L+IE+ RGY ++ NN+ +
Sbjct: 120 DIMLPPSVRIIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFV 179
Query: 272 YPIDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPF 93
+PIDA F PV+N N+SIHSY + NE QEILFLEIWTNG L PKEAL++ASRNLI+ F+PF
Sbjct: 180 FPIDAAFAPVQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPF 239
Query: 92 LHVEEETFYLENNQHQVTLPFFP 24
L+ +EE N+ P P
Sbjct: 240 LNAKEENSDGTNSLSDDITPSLP 262
[189][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 216 bits (549), Expect = 1e-54
Identities = 103/184 (55%), Positives = 144/184 (78%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T IT AKS+N+ H+YS I GI+ES+++IL+N EIVLRS+ Y T+ A I + GP ITA
Sbjct: 60 TAITYAKSKNVIHEYSTIIGIEESINDILINFKEIVLRSDSYETQKAYISITGPKDITAE 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI+LPP+V+ ID++QHIAT+T+ I L IE++I+++RGY ++ S + + IDAVFMP+
Sbjct: 120 DILLPPSVQAIDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPI 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
AN+S+HS+GN + QEILF+EIWT+GSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 180 RKANYSVHSFGNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEIIS 239
Query: 62 ENNQ 51
+ ++
Sbjct: 240 DRDE 243
[190][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 211 bits (538), Expect = 3e-53
Identities = 100/176 (56%), Positives = 135/176 (76%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT K E + H+YS I GIQESVH+IL+NL EIVL+SN Y T+ A I + GP +TA
Sbjct: 60 TCITYVKFEKVTHEYSTIMGIQESVHDILINLKEIVLKSNSYKTQEASISILGPKRVTAE 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI+LP +VE+ID TQHIAT+T+ + I+L I ++RGY ++ +ED ++ ++A F P+
Sbjct: 120 DIVLPSSVEVIDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPI 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
NAN+S+HS+ N EKQEILF+E+WTNGSLTPKEAL +AS++LINLFIP LH ++E
Sbjct: 180 RNANYSVHSFENEKEKQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKE 235
[191][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 211 bits (537), Expect = 4e-53
Identities = 108/194 (55%), Positives = 142/194 (73%), Gaps = 2/194 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T IT AK E + H+YS IAGIQESVH+I +N EIVL SN T+ A I + GP ITA+
Sbjct: 60 TSITCAKFEKVTHEYSTIAGIQESVHDISINSKEIVLESNSSETQKAFISILGPKKITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID Q+IATLT+ I L IEL+IE++ GY ++ SN + + IDA+FMP+
Sbjct: 120 DIILPPSVKIIDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPI 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY- 66
NAN+S+HS+ N N+ QE+LF+EIWTNGS+TPK+AL++ASR+LI+LFIPFLH E
Sbjct: 180 RNANYSVHSFENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREIIN 239
Query: 65 -LENNQHQVTLPFF 27
LEN + +F
Sbjct: 240 ELENEYKLSNISYF 253
[192][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 202 bits (513), Expect = 2e-50
Identities = 92/174 (52%), Positives = 133/174 (76%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
IT A+ E + H+YS +AGIQE++H+IL+NL EIVLRS+ G + A++ V GP +TA DI
Sbjct: 62 ITSARFEGVAHEYSTVAGIQETIHDILVNLKEIVLRSDSDGNQKAILSVTGPKRVTAGDI 121
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVEN 237
LPP+V++ID++Q+I T+T+PI + IEL IE + GY ++ N + D +P+DAVFMPV N
Sbjct: 122 SLPPSVKVIDDSQYIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRN 181
Query: 236 ANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+H +G+G E +EILF+E+WTNGSLTP EA+ +AS++ I+L PFLH + E
Sbjct: 182 VNYSVHPFGSGKEMREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHE 235
[193][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 193 bits (490), Expect = 1e-47
Identities = 98/193 (50%), Positives = 139/193 (72%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T IT AK +N+ H+YS + GI+ES+H+IL+NL EIVL+S+ Y T+ A I + GP +TA
Sbjct: 60 TSITYAKFKNVVHEYSTLVGIKESIHDILINLKEIVLQSDSYETQKASISILGPRDVTAG 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI+LP +V+IID +QHIAT+T I L +EL+IER+ GY + + IDA+F P+
Sbjct: 120 DILLPTSVKIIDASQHIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPI 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
NAN+SIHS+ + N+ +EILFLE+WTNGSLTP AL +ASR+LI+LFI FL++E+E
Sbjct: 180 RNANYSIHSFESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIK 239
Query: 62 ENNQHQVTLPFFP 24
E +++ + FP
Sbjct: 240 EIENNELNIKNFP 252
[194][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 192 bits (487), Expect = 2e-47
Identities = 93/170 (54%), Positives = 128/170 (75%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
IT A I H+YS I GI+ES+H+IL+NL EI+LRS+ + A ICV GP +TARDI
Sbjct: 63 ITSATIRGIKHEYSAINGIRESIHDILINLKEIILRSDSPEPQKAYICVSGPSEVTARDI 122
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVEN 237
+ +IDNTQ++AT+T I L IEL IE++RGY ++ S + + +PIDAVFMP+ N
Sbjct: 123 QGSSLIHVIDNTQYVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRN 182
Query: 236 ANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
AN+S+HS+G+ + +EIL LEIWTNGSLTP++AL++ASRNLI+LFIP ++
Sbjct: 183 ANYSVHSFGSREKTKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMN 232
[195][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 189 bits (480), Expect = 1e-46
Identities = 97/196 (49%), Positives = 142/196 (72%), Gaps = 2/196 (1%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
IT AK + + H+YS I G+QES+H+IL+NL EIVL+S + + A I V GP ITA+DI
Sbjct: 62 ITYAKIKKVKHEYSTIIGLQESIHDILINLKEIVLKSESFEPQKAYISVLGPKKITAQDI 121
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVEN 237
P ++I+ Q+IATL + I L IEL IE++RGY ++ +++ +P+DAVFMP+ N
Sbjct: 122 KGPSCIKIMIIAQYIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRN 181
Query: 236 ANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYL 63
AN+S+HS+ + + +EILFLEIWT+GSLTPKEAL++ASRNLI+LFIP ++ E E+ F +
Sbjct: 182 ANYSVHSFESEKKIKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNFGI 241
Query: 62 ENNQHQVTLPFFPFHN 15
E ++ + +FPF +
Sbjct: 242 EKT-NESNMSYFPFQS 256
[196][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 189 bits (479), Expect = 2e-46
Identities = 90/174 (51%), Positives = 128/174 (73%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
IT AK E + H+YS I GIQE++H+I +NL E V RS+ ++ A + V GP +TA D
Sbjct: 62 ITCAKFEGVIHEYSTITGIQETIHDISVNLKETVPRSDSNDSKEAFLSVTGPKRVTAGDT 121
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVEN 237
LPP+V+IID++Q+I T+T+PI + IE +IE++ GY ++ N + D +P+DAV MPV N
Sbjct: 122 SLPPSVKIIDDSQYIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRN 181
Query: 236 ANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+H +G+G E +EI F+EIWTNGS TP EAL +AS+NLI+L IPFLH++ E
Sbjct: 182 VNYSVHPFGSGREMREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHE 235
[197][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 187 bits (474), Expect = 7e-46
Identities = 95/179 (53%), Positives = 128/179 (71%), Gaps = 3/179 (1%)
Frame = -3
Query: 602 TCITRAKSENIP-HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITA 426
T IT AK E HDYS ++GI+ESVH+IL+NL EIVL+S LYG A IC GP +TA
Sbjct: 60 TSITYAKIEKTTVHDYSTMSGIKESVHDILLNLKEIVLKSELYGIHKASICTVGPRNVTA 119
Query: 425 RDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVF 252
+DIILP +++IID TQHIA+LT+ + + L IERN+GY++ + S ++ +PIDA
Sbjct: 120 QDIILPSSIKIIDGTQHIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPC 179
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N N SIHSY + N+ +E+L EIWTNG LTP+EA ++A LI+L +P LH+EE+
Sbjct: 180 MPVRNVNFSIHSYKSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED 238
[198][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 183 bits (465), Expect = 8e-45
Identities = 94/185 (50%), Positives = 133/185 (71%), Gaps = 1/185 (0%)
Frame = -3
Query: 602 TCITRAK-SENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITA 426
T IT A+ +NI H+YS+I GI+ESVH+ILMNL +IVLRS LYG A IC GP +TA
Sbjct: 60 TYITYARFQKNILHEYSSIIGIKESVHDILMNLKQIVLRSELYGIHEASICTVGPKNVTA 119
Query: 425 RDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMP 246
+DIILP +++IID+TQHIA+LT+ I + LKIE+ + Y+++ +D +PID V +P
Sbjct: 120 QDIILPSSIQIIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLP 179
Query: 245 VENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
V+N N SIHSY + + QE+L EIWTNG LTP+E +++A +L++L IP L VE+
Sbjct: 180 VQNVNFSIHSYKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQN--- 236
Query: 65 LENNQ 51
++N+Q
Sbjct: 237 IKNSQ 241
[199][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 182 bits (461), Expect = 2e-44
Identities = 90/178 (50%), Positives = 130/178 (73%), Gaps = 2/178 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK ENI H+YS + GIQESVH+IL+N EIVL+S + A I + GP +TA+
Sbjct: 63 TCITCAKFENITHEYSTMDGIQESVHDILINSKEIVLKSKSSEAQKAFISIVGPRRVTAQ 122
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI LP +VE+ID QHIAT+T+ + L IELKIE++ GY + ++D ++ +DAVF P+
Sbjct: 123 DIELPTSVEVIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPI 182
Query: 242 ENANHSIHSYGNGNEK--QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ N+SIH + + ++ +E+L EIW+NGS+TP+EA+++ASR+ INLF+PFL E+E
Sbjct: 183 RSVNYSIHCFESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKE 240
[200][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 181 bits (458), Expect = 5e-44
Identities = 95/195 (48%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLY-GTRNALICVQGPGYITA 426
T IT A+ + H+YS I G+QE++H++L+NL EIVLR + + A + V GP +TA
Sbjct: 60 TSITCARFCGVVHEYSTITGLQETIHDVLVNLKEIVLRGDSKEDIQEAFLSVTGPKEVTA 119
Query: 425 RDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMP 246
D+ LPP VE IDN+Q+IAT+T+PI L IEL+IE++ GY ++ +PIDAVFMP
Sbjct: 120 GDLSLPPGVEAIDNSQYIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMP 179
Query: 245 VENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EETF 69
V N N+SIH +G+G QEILF+EIWTNGSLTP EAL +AS L++L FL+V +
Sbjct: 180 VRNVNYSIHLFGSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVS 239
Query: 68 YLENNQHQVTLPFFP 24
EN + + L P
Sbjct: 240 LFENGEDSLDLTKSP 254
[201][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 171 bits (433), Expect = 4e-41
Identities = 85/175 (48%), Positives = 126/175 (72%), Gaps = 1/175 (0%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
++ A +N+ +Y+ + G++E+ +IL+NL E+V+RS+ + A+I GPG +TA DI
Sbjct: 174 VSCATFKNVKSEYAAMKGVEETPMDILVNLKELVIRSDSDEPQKAIISAIGPGPVTAGDI 233
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVEN 237
+LPP++E+ D TQHIA LT+ + L IEL +E+ GY + D + ID+VFMPV N
Sbjct: 234 VLPPSLEVTDPTQHIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRN 293
Query: 236 ANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
AN+S+HSY + QEILFLEIWTNGS+TP+EALH+A+R LI+LF+PFLH +++
Sbjct: 294 ANYSVHSYESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKK 348
[202][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 169 bits (427), Expect = 2e-40
Identities = 82/168 (48%), Positives = 114/168 (67%), Gaps = 1/168 (0%)
Frame = -3
Query: 599 CITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 420
CIT K +NI H+Y + G++ES+ +IL+NL EIV + T+ I V+GP ITA D
Sbjct: 58 CITSVKIDNIKHEYCTLTGVRESIQDILLNLKEIVFKGVCDKTQKGFIFVKGPKKITASD 117
Query: 419 IILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVE 240
I + P +EI+D+ Q IA LTEPID +EL IE++ G+ L+ + S+ IDA+FMP+
Sbjct: 118 IQIEPCIEILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIR 177
Query: 239 NANHSIHSYGN-GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFI 99
N N+SIH G+ K E+L LEIWTNGS+TPKEA HQAS ++N+F+
Sbjct: 178 NVNYSIHPVEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFL 225
[203][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 162 bits (410), Expect = 2e-38
Identities = 89/176 (50%), Positives = 122/176 (69%), Gaps = 5/176 (2%)
Frame = -3
Query: 599 CITRAKS--ENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGT-RNALICVQGPGYIT 429
CIT A S E I H+Y+ IAG++ESVH+ILMNL EIVL++N + + A I + GP +T
Sbjct: 59 CITPAGSPPERINHEYTAIAGVRESVHDILMNLKEIVLKTNPFSAAQEAHIPIVGPRKVT 118
Query: 428 ARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFM 249
A+DI+LPP+V +D TQHIAT+T I I L++ER G+ + ++ S P DAVFM
Sbjct: 119 AQDIVLPPSVGTMDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFM 178
Query: 248 PVENANHSIHSYGN--GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
P+ +AN+SIH G+ G +E+L LE T+GS TP+EA+++ASRNL NLF PF H
Sbjct: 179 PIRHANYSIHRLGSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[204][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 159 bits (403), Expect = 1e-37
Identities = 73/174 (41%), Positives = 119/174 (68%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT K +N H+YS+++G+QESVH+IL+NL +I+L S+ G + V GP + A
Sbjct: 60 TCITSVKIKNAIHEYSSLSGVQESVHDILINLKKIILSSSFSGIFEGFLSVVGPKTVLAS 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
D+ LP ++I++ Q+IAT+ +PI+ +++ I++ +GYSLK + + + +D VF+P+
Sbjct: 120 DLNLPSFIKIVNPDQYIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPI 179
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+ N+SIHS+ + +E L +E+WTNGS+ PKEA+ +AS NL+NLF P + E
Sbjct: 180 RSVNYSIHSFEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQE 233
[205][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 159 bits (401), Expect = 2e-37
Identities = 79/178 (44%), Positives = 117/178 (65%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T I AK H+YS + GIQES+H+IL+NL ++++++ + + LI + GP +TA
Sbjct: 62 TAIVAAKIYGAAHEYSTLEGIQESIHDILLNLKQVIIKNKICEFQKCLISIIGPKKVTAA 121
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI L + I + HIAT+T+PI +EL I + RGY ++ N+ +D +P+DA+F PV
Sbjct: 122 DIELSQNITISNPYHHIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPV 181
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
N N SIH N E+QE L LEIWTNG++TP +AL Q S NLI+LF+P +E++T+
Sbjct: 182 RNVNFSIH---NLAEQQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDDTY 236
[206][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 156 bits (394), Expect = 1e-36
Identities = 82/200 (41%), Positives = 122/200 (61%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT A H+YS + GI+ES+H+IL+NL +IV +S+ + ++ GPG +TA+
Sbjct: 57 TCITSAYVVGASHEYSTLKGIRESIHDILLNLKDIVFKSDTLERQEGILLFNGPGIVTAQ 116
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
I LPP V+++DNTQ+IA L P + I + +E + + + + +DA PV
Sbjct: 117 HIKLPPVVQVVDNTQYIARLEMPTSIEIHITLENTKTCTSLNTMPTTKGRFILDAALKPV 176
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL 63
N N+SIHS G G+ +QE+L LE+WTNGSLTP+E + QAS+NL +L P L V E F
Sbjct: 177 RNMNYSIHSLGEGDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKV-ERYFQA 235
Query: 62 ENNQHQVTLPFFPFHNRLVN 3
+ N H+ + F P + +N
Sbjct: 236 KQNIHKKRM-FTPTQSENLN 254
[207][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 152 bits (383), Expect = 3e-35
Identities = 77/135 (57%), Positives = 101/135 (74%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCIT AK + + H+YS I GIQESVH+IL+N EIVL+SN Y T+ A I + GP ITA+
Sbjct: 60 TCITCAKFKKVTHEYSTILGIQESVHDILINSKEIVLKSNSYETQKAFISILGPKKITAQ 119
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DIILPP+V+IID TQ+IATLT+ I L IE +IE++ GY ++ S D + +DAVFMP+
Sbjct: 120 DIILPPSVKIIDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSKKSTDGLFFVDAVFMPI 179
Query: 242 ENANHSIHSYGNGNE 198
NAN+SIHS+ N N+
Sbjct: 180 RNANYSIHSFENKNK 194
[208][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 144 bits (362), Expect = 7e-33
Identities = 80/182 (43%), Positives = 116/182 (63%), Gaps = 9/182 (4%)
Frame = -3
Query: 602 TCITRAK--SENIPHDYSN--IAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGY 435
T +T K ++ + H +S+ I GI+ESVH+I+MNL EIV R L+G A I GP
Sbjct: 60 TNVTHVKFFNKRVKHLFSSSTILGIEESVHDIIMNLREIVFRCELHGIHKAYIYTVGPKN 119
Query: 434 ITARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRG---YSLKMSNNFEDRSYPI 264
+TA+DIILPP ++I+D TQHIA++T+PI L + LKIE+N G S+ + R P
Sbjct: 120 VTAQDIILPPFIQIVDGTQHIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPT 179
Query: 263 DAVFMPVENANHSIHSYGNGNEKQ--EILFLEIWTNGSLTPKEALHQASRNLINLFIPFL 90
+ +MPV + ++++ Y + + +IL E+WTNG LTPKEAL++A LI+L IP L
Sbjct: 180 EIFYMPVRSVTYNVYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLL 239
Query: 89 HV 84
V
Sbjct: 240 DV 241
[209][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 141 bits (356), Expect = 4e-32
Identities = 72/174 (41%), Positives = 115/174 (66%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TC T K I H+Y + GIQE+V +IL+N+ ++ + SN + + A I V GP + A
Sbjct: 162 TCAT-FKDMGIVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAG 220
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI+ PP++ + D +Q+IA +T I +E+++E++ GY + + + ID+VFMPV
Sbjct: 221 DILCPPSLVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPV 280
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
AN+S+HS+ + +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 281 VQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334
[210][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 141 bits (356), Expect = 4e-32
Identities = 72/174 (41%), Positives = 115/174 (66%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TC T K I H+Y + GIQE+V +IL+N+ ++ + SN + + A I V GP + A
Sbjct: 249 TCAT-FKDMGIVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAG 307
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
DI+ PP++ + D +Q+IA +T I +E+++E++ GY + + + ID+VFMPV
Sbjct: 308 DILCPPSLVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPV 367
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
AN+S+HS+ + +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 368 VQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421
[211][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 135 bits (341), Expect = 2e-30
Identities = 76/181 (41%), Positives = 107/181 (59%), Gaps = 4/181 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H++S + G++E V EIL+N+ E+VLRSN T+ + QGPG +TA
Sbjct: 69 TAVTAVRIAGVTHEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQGPGEVTAE 128
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGY---SLKMSNNFEDRSYPIDAVF 252
+ LP VE+I+ HIATL E L +E I R RGY S + ID+VF
Sbjct: 129 KLQLPSEVEVINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDFLQIDSVF 188
Query: 251 MPVENANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N+++ + G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P V +
Sbjct: 189 MPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSPLQEVSFD 248
Query: 74 T 72
T
Sbjct: 249 T 249
[212][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 135 bits (341), Expect = 2e-30
Identities = 66/175 (37%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Frame = -3
Query: 599 CITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 420
CIT + + H++S I G++E+V +IL+NL EIVL++ T+ + VQGP + ARD
Sbjct: 57 CITSVQIPGVNHEFSTIHGVREAVLDILLNLKEIVLKTQSQETQRGHLSVQGPSTVLARD 116
Query: 419 IILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFM 249
+ LP ++E++D Q+IAT++ + L +E +E +GY L + F+ PIDAVFM
Sbjct: 117 LQLPSSIELVDPDQYIATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFM 176
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
PV N+++ G+ QE + +E+WTNGS+ ++A+ + +INLF P +V
Sbjct: 177 PVTKVNYTVEENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSPLQNV 231
[213][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 129 bits (323), Expect = 2e-28
Identities = 77/190 (40%), Positives = 106/190 (55%), Gaps = 5/190 (2%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
IT + + H++S I GI+E V EIL+NL EIV L + + VQGP +TAR
Sbjct: 53 ITAVRIAGVSHEFSTINGIREDVLEILLNLKEIVFSGQLQESTIGRLTVQGPAIVTARSF 112
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFED--RSYPIDAVFMPV 243
LPP +++ID Q+IAT+ L +E KIE GY + +N + +D+VFMPV
Sbjct: 113 ELPPEIKLIDPEQYIATICGNNTLEMEFKIEVGSGYKIVEKDNSTEHFEFLQVDSVFMPV 172
Query: 242 ENANHSI-HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV--EEET 72
+ N I + G N E L L+IWTNGS++ KEA+ A+ NLINLF P + E ET
Sbjct: 173 KKVNFRIEETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDGESET 232
Query: 71 FYLENNQHQV 42
Y N +
Sbjct: 233 DYETNETSHI 242
[214][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 127 bits (320), Expect = 5e-28
Identities = 75/181 (41%), Positives = 107/181 (59%), Gaps = 8/181 (4%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H++S + G++E V EIL+N+ E+VLRS+ T+ + QGPG +TA
Sbjct: 71 TAVTAVRIAGVTHEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAE 130
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSYPI 264
+ LP VE+I+ HIATL E L +E I R GY S M+ +F I
Sbjct: 131 KLQLPSDVEVINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDF----LQI 186
Query: 263 DAVFMPVENANHSIHSYGNGN-EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
D+VFMPV N+++ + G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P
Sbjct: 187 DSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAPLQE 246
Query: 86 V 84
V
Sbjct: 247 V 247
[215][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 126 bits (316), Expect = 2e-27
Identities = 71/181 (39%), Positives = 108/181 (59%), Gaps = 4/181 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ I G++E V EIL+NL EIVL S + + VQGP +TA
Sbjct: 51 TAVTAVRIAGVNHEFATIPGVREDVLEILLNLKEIVLNSYSNQRQIGRLLVQGPATVTAG 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
LP VE++D Q+IATL+ L +E ++E+ GY N E + IDAVF
Sbjct: 111 HFDLPSEVEVVDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVF 170
Query: 251 MPVENANHSIH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N+++ + G+ +++ L L+IWTNGSLTP+EAL QA+ L++LF+P + E
Sbjct: 171 MPVRKVNYTVEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLKDITLE 230
Query: 74 T 72
+
Sbjct: 231 S 231
[216][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 125 bits (313), Expect = 3e-27
Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 4/97 (4%)
Frame = -3
Query: 401 VEIIDNTQH----IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENA 234
+++I N + IA L +PIDLCI L+I+RN YS+K NNF+D SYPID VFM V+NA
Sbjct: 52 LDLISNNNYSTILIARLKKPIDLCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNA 111
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQAS 123
NH+IH YGN NE+QEILFL++WTN +LTPKEA H+AS
Sbjct: 112 NHNIHFYGNVNERQEILFLKLWTNKNLTPKEAFHEAS 148
[217][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 123 bits (309), Expect = 1e-26
Identities = 66/173 (38%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ I G++E EI++N+ EI+L+S + + + GPG +TA
Sbjct: 51 TAVTALRIGGVNHEFATIPGVREDALEIILNMKEIILKSYTHQPQIGRLTATGPGQVTAA 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
LP VE++D TQ+IATL + L +E +IE+ + Y N E + IDAVF
Sbjct: 111 QFDLPSEVEVVDPTQYIATLADGAKLEMEFRIEKGKSYRAVQRNRDEATALDFLQIDAVF 170
Query: 251 MPVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
MPV N+S+ S + G+ ++ L LEIWTNGS+ P+EAL QA+ + LF P
Sbjct: 171 MPVTKVNYSVDSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNP 223
[218][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 123 bits (309), Expect = 1e-26
Identities = 68/178 (38%), Positives = 106/178 (59%), Gaps = 4/178 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T IT + + H+++ IAGI+E V EIL+N+ E+VL+S G + + GP + +
Sbjct: 51 TAITAVRIAGVNHEFATIAGIREDVLEILLNMKEVVLKSYTPGPHIGRVMITGPSTVRSA 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
LP VE +D Q+IATL + L +E +IER +GY E S +DAVF
Sbjct: 111 QFDLPSDVEFVDPGQYIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVF 170
Query: 251 MPVENANHSIH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
MPV N+S+ + +G+ +++ L L++WTNGS++P+EAL QA+ L++LF P +E
Sbjct: 171 MPVTKVNYSVEDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[219][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 123 bits (308), Expect = 1e-26
Identities = 70/180 (38%), Positives = 107/180 (59%), Gaps = 4/180 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
+ IT + + H++ +I G++E V E+L+NL IVL+S + + +QG +T
Sbjct: 51 SAITAVRIAGVNHEFCSIPGVKEDVLELLLNLKNIVLKSYTNEPQIGRLKIQGACKVTTA 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVF 252
+ LP VEII TQ++AT+ E L +E KIE+ RGY + K + N D PIDA+F
Sbjct: 111 NFELPSEVEIIHGTQYVATVAENAILEMEFKIEKGRGYKIIDKKQTENSID-FLPIDAIF 169
Query: 251 MPVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N+ + + +E +E L LEIW NGS+TP++++ QA+ L+NLF PF + E
Sbjct: 170 MPVRKVNYMVEEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPFKKINFE 229
[220][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 122 bits (307), Expect = 2e-26
Identities = 74/174 (42%), Positives = 99/174 (56%), Gaps = 12/174 (6%)
Frame = -3
Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNL--------YGTRNALICVQGPGYITARDIIL 411
H+YS + G++ESV EIL+NL +IV++ + A I QGPG +TA I
Sbjct: 72 HEYSTLDGVRESVDEILLNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGVVTAEHIKF 131
Query: 410 PPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENAN 231
P ++ +D Q IATL LCIEL I + L + + + IDA F PV+ AN
Sbjct: 132 PSSILAVDPDQSIATLLNETQLCIELFIRQGIAKQLTRTKK-NHQGFFIDANFTPVQKAN 190
Query: 230 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF----IPFLHVE 81
SIHS G+ Q++L LEIWTN +LTP EAL+QA +L+NLF P LH E
Sbjct: 191 FSIHSVGDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[221][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 122 bits (306), Expect = 2e-26
Identities = 69/198 (34%), Positives = 115/198 (58%), Gaps = 9/198 (4%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ I G++E V +IL+N+ ++VLRS+ + + VQGP +T
Sbjct: 51 TAVTAVRIAGVNHEFATIPGVREDVLDILLNMKQVVLRSHTNDPQIGRLFVQGPATVTTD 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
D LP VEI++ TQ++ATL+ L +E +IE+ +GY N E + IDA++
Sbjct: 111 DFELPTEVEIVNPTQYVATLSSDATLEMEFRIEQGKGYHAVGKNRDEAAALDFLEIDAIY 170
Query: 251 MPVENANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIP-----FL 90
MPV N+ + G +++ L L+IWTNG+LTP+E+L QA+ L++LF P F
Sbjct: 171 MPVRRVNYEVEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDATFN 230
Query: 89 HVEEETFYLENNQHQVTL 36
VE+ E+ +Q+ +
Sbjct: 231 VVEDIELEEEDETNQIPI 248
[222][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 121 bits (303), Expect = 5e-26
Identities = 76/191 (39%), Positives = 109/191 (57%), Gaps = 9/191 (4%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T IT + + ++S I GI+E + EIL+NL IVL+S + + ++GP +TA
Sbjct: 51 TAITGVRIAGVRDEFSTIPGIREDILEILLNLKGIVLKSKTNDLKFGRLKIKGPAVVTAN 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL------KMSNNFEDRSYPID 261
I LP VEI++ +IAT+T L IE KIE GY L K S ++ ID
Sbjct: 111 CIQLPSEVEIVNPNHYIATITTSNVLEIEFKIESGTGYKLAGQTFCKKSQDY----LQID 166
Query: 260 AVFMPVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH- 87
A+FMPV+ + I + Y N N+ E LFL+IWTNGS++P+EA+ ASR +I+ F L
Sbjct: 167 AIFMPVQKVDFKIENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLLEN 226
Query: 86 -VEEETFYLEN 57
+ +ET EN
Sbjct: 227 KLPQETKESEN 237
[223][TOP]
>UniRef100_UPI0001985CC2 PREDICTED: similar to Os04g0237300, partial n=1 Tax=Vitis vinifera
RepID=UPI0001985CC2
Length = 274
Score = 120 bits (302), Expect = 6e-26
Identities = 57/70 (81%), Positives = 62/70 (88%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
TCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR A IC +GPGY+TA+
Sbjct: 205 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQ 264
Query: 422 DIILPPAVEI 393
DII PP+VEI
Sbjct: 265 DIISPPSVEI 274
[224][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 120 bits (302), Expect = 6e-26
Identities = 74/197 (37%), Positives = 110/197 (55%), Gaps = 4/197 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ I G++E V EI++N+ EIVL+S + + G ++TA
Sbjct: 51 TAVTAIRIGGVNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAG 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
LP VE+I+ TQ IATLTE L +E +IE+ GY ++ E + IDAVF
Sbjct: 111 QFDLPSEVEVINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVF 170
Query: 251 MPVENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N+S+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P +
Sbjct: 171 MPVTKVNYSVESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL--- 227
Query: 74 TFYLENNQHQVTLPFFP 24
NQ + +P +P
Sbjct: 228 ------NQLETAVPEYP 238
[225][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 120 bits (302), Expect = 6e-26
Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 4/180 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ + G++E V EILM + E++LRS + + V GP +T
Sbjct: 51 TAVTAVRIAGVSHEFATVPGVREDVLEILMKMKEVILRSYSSQPQIGRLLVNGPATVTVA 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
LP VE+ID TQ++ATL E L +E +IE+ +GY E S ID+VF
Sbjct: 111 HFDLPSEVEVIDQTQYVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSVF 170
Query: 251 MPVENANHSI-HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N+S+ + G + ++ L LE+WTNGS++P+EAL A+ L+ LF P + E
Sbjct: 171 MPVRKVNYSVEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNPLKDISLE 230
[226][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 120 bits (302), Expect = 6e-26
Identities = 64/171 (37%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
I + I H++S + G++E V EIL+NL IVL+ N+ + + VQGP +T+ I
Sbjct: 57 IVSVRIAGINHEFSTVKGVKEDVLEILLNLKNIVLKGNVLKNQIGRLKVQGPAIVTSGQI 116
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFM 249
P + ++D Q+IAT++ L +ELK+E++ GY K+ F +S PID++FM
Sbjct: 117 EFPLDITVVDPCQYIATISGNDYLEMELKVEKSSGY--KLVETFSKKSPLDFLPIDSIFM 174
Query: 248 PVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
PV+ N+ + + E L LE+WTNGSL+P+++++ AS NL+ LF P
Sbjct: 175 PVKKVNYYVEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[227][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 120 bits (301), Expect = 8e-26
Identities = 74/197 (37%), Positives = 110/197 (55%), Gaps = 4/197 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ I G++E V EI++N+ EIVL+S + + G ++TA
Sbjct: 51 TAVTAIRIGGVNHEFATIPGVREDVLEIMLNMKEIVLKSYTDQPQIGRLVATGAAHVTAG 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
LP VE+I+ TQ IATLTE L +E +IE+ GY ++ E + IDAVF
Sbjct: 111 QFDLPSEVEVINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVF 170
Query: 251 MPVENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N+S+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P +
Sbjct: 171 MPVTKVNYSVESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL--- 227
Query: 74 TFYLENNQHQVTLPFFP 24
NQ + +P +P
Sbjct: 228 ------NQLETAVPEYP 238
[228][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 120 bits (301), Expect = 8e-26
Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
+T + + H+++ + G++E V E+++N+ EI+L+S T+ + GP + A
Sbjct: 53 VTALRIAGVNHEFATVQGVREDVMELMLNMKEIILKSYTNQTQIGRLVATGPATVVAAQF 112
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMP 246
LP VEI+D Q++ATL E L +E ++E+ +GY + E S ID++FMP
Sbjct: 113 DLPSEVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMP 172
Query: 245 VENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
V N+S+ + ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 173 VTKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[229][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 120 bits (301), Expect = 8e-26
Identities = 65/180 (36%), Positives = 104/180 (57%), Gaps = 4/180 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ + G++E V EI+M + E++L+S + + V GP ITA
Sbjct: 51 TAVTAVRIAGVSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITAS 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
LP VE+ID TQ++AT+ E L +E +IER +GY E S ID++F
Sbjct: 111 HFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIF 170
Query: 251 MPVENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 171 MPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[230][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 120 bits (301), Expect = 8e-26
Identities = 65/180 (36%), Positives = 104/180 (57%), Gaps = 4/180 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ + G++E V EI+M + E++L+S + + V GP ITA
Sbjct: 51 TAVTAVRIAGVSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITAS 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
LP VE+ID TQ++AT+ E L +E +IER +GY E S ID++F
Sbjct: 111 HFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIF 170
Query: 251 MPVENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 171 MPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[231][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 120 bits (300), Expect = 1e-25
Identities = 66/180 (36%), Positives = 104/180 (57%), Gaps = 4/180 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ + G++E V EILM + E++L++ + + V GP ITA
Sbjct: 51 TAVTAVRIAGVSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVSGPTTITAA 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
LP VE+ID TQ++AT+ E L +E +IE+ +GY E S ID++F
Sbjct: 111 HFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSIF 170
Query: 251 MPVENANHSI-HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N+S+ S G G ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 171 MPVRKVNYSVEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[232][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 120 bits (300), Expect = 1e-25
Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + + H+++ + G++E V EILM + E++L++ + + V GP +TA
Sbjct: 51 TAVTAVRIDGVSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVNGPVTVTAA 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
LP VE+ID TQ++AT+ + L +E +IER +GY E S ID+VF
Sbjct: 111 HFDLPSEVEVIDPTQYVATIADGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSVF 170
Query: 251 MPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
MPV N+S+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 171 MPVRKVNYSVEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 229
[233][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 120 bits (300), Expect = 1e-25
Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
+T + + H+++ I G++E V EI++N+ E+VL+S + + GPG +TA
Sbjct: 53 VTAIRIAGVNHEFATILGVREDVLEIMLNMKELVLKSYTDQPQIGRLTAIGPGTVTAAQF 112
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMP 246
+P VE+ID Q+IATL E L +E ++ER GY + E+ S ID+VFMP
Sbjct: 113 EVPSEVEVIDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMP 172
Query: 245 VENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
V N+++ +G ++ L L+IWTNGS+ P+EAL +AS + NLFIP + E
Sbjct: 173 VTKVNYTVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229
[234][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 119 bits (299), Expect = 1e-25
Identities = 71/194 (36%), Positives = 112/194 (57%), Gaps = 5/194 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T I+ + I H+++ I G++E + EIL+NL IV++S+ + + VQGP +TA
Sbjct: 51 TAISAVRIVGIRHEFATIPGVREDILEILLNLKGIVIKSDTTEIKFGRLKVQGPLVLTAD 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFM 249
I LP ++I++ +IAT++ I+L +E KIE GY L ++ N+ ID++FM
Sbjct: 111 SIDLPSGIKIVNPNHYIATISTSINLELEFKIEHGIGYKLASQLFNDENKNFLQIDSIFM 170
Query: 248 PVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--E 78
PV+ N I + Y N E L LEIWTNGS+ P EAL +A + +IN F L + +
Sbjct: 171 PVQKVNFKIENLYDADNSISERLILEIWTNGSIEPIEALKKACKIIINCFNSLLKTQNTK 230
Query: 77 ETFYLENNQHQVTL 36
ET +N ++T+
Sbjct: 231 ETTKKTSNNRKLTI 244
[235][TOP]
>UniRef100_A0T0K0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaeodactylum
tricornutum RepID=RPOA_PHATR
Length = 311
Score = 119 bits (299), Expect = 1e-25
Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 4/169 (2%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
I+ + I H++S I G++E + EIL+NL I+ S + T+ + VQGP +TA I
Sbjct: 53 ISAVRIAGITHEFSTIPGVREDILEILLNLKGIICTSQIQDTQFGHLKVQGPSVVTADLI 112
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSY-PIDAVFMP 246
LPP VEII+ +IAT++ L IE K E GY L S NF ED +Y +D +FMP
Sbjct: 113 QLPPGVEIINPNHYIATISTSNILEIEFKFEYGSGYHL-ASQNFVEEDENYLQLDTIFMP 171
Query: 245 VENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
V+ + I + Y N E LFL+IWTNGS++P +AL A++ +I+LF
Sbjct: 172 VQKVDFKIENIYDATNNISERLFLDIWTNGSISPNDALESAAQVIIDLF 220
[236][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 119 bits (299), Expect = 1e-25
Identities = 63/177 (35%), Positives = 100/177 (56%), Gaps = 3/177 (1%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
IT K +++S + GI+ESV EIL+NL EIV R+ + + +QGP + A ++
Sbjct: 58 ITSVKIPGANNEFSILPGIRESVLEILLNLKEIVFRTKSLDVQKGYLSIQGPCVVKAANL 117
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMP 246
LP ++E++D Q+IATL+ +L +E I +GY + + N S P+DA+FMP
Sbjct: 118 QLPTSIEVVDGGQYIATLSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDAIFMP 177
Query: 245 VENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ N+ + E + LEIWTNGS++P++AL + +I+LF P H E
Sbjct: 178 IHKVNYMVEQDHTSKFLTERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSSE 234
[237][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 119 bits (298), Expect = 2e-25
Identities = 62/171 (36%), Positives = 98/171 (57%), Gaps = 4/171 (2%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
+T + + H+++ + G++E V E+++N+ EI L+S T+ + GP + A
Sbjct: 53 VTALRIAGVNHEFATVEGVREDVMELMLNMKEITLKSYTNQTQIGRLVATGPATVVAAQF 112
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMP 246
LP VEI+D Q++ATL E L +E ++E+ +GY + E S ID++FMP
Sbjct: 113 DLPSEVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMP 172
Query: 245 VENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
V N+S+ + ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 173 VTKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[238][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 118 bits (296), Expect = 3e-25
Identities = 66/173 (38%), Positives = 104/173 (60%), Gaps = 6/173 (3%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T IT + + H+++ I G++E V EI++NL E VL+S+ Y + + VQGP +T
Sbjct: 51 TAITAVRIAGVNHEFATIEGVREDVLEIMLNLKEAVLKSHTYQKQIGRLLVQGPATVTVG 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS-----YPIDA 258
LP VE+++ Q+IATL+ L +E +IE+ GY + + D S IDA
Sbjct: 111 HFDLPSEVEVVNKNQYIATLSPGATLEMECQIEKGTGY--RAVDRHRDDSAALDFLQIDA 168
Query: 257 VFMPVENANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
+FMPV N+++ +G +++ L LEIWT+GSLTP+EA+ QA+ L++LF
Sbjct: 169 IFMPVRKVNYTVEDARDGGSLEKDRLTLEIWTSGSLTPQEAISQAAAILVDLF 221
[239][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 118 bits (295), Expect = 4e-25
Identities = 68/181 (37%), Positives = 107/181 (59%), Gaps = 5/181 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ + GI+E V +IL+N+ E+VLRS + + VQGP +TA
Sbjct: 51 TAVTAVRITGVNHEFATMKGIREDVLDILLNMKELVLRSYTSDIQIGRLAVQGPKRVTAA 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAV 255
D+ LP V+++ +IATL E L +E +IER +GY + ED + IDA+
Sbjct: 111 DLELPTEVQVVHPRHYIATLAEDGQLEMEFQIERGKGYR-AIERGSEDGAAIDYLSIDAI 169
Query: 254 FMPVENANHSIHSYGN-GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
FMPV N ++ S + N +Q+ L LEIWT+GSL+P+EAL QA++ L++ P +
Sbjct: 170 FMPVRKVNWTVESERSAANVEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRPLQEITF 229
Query: 77 E 75
E
Sbjct: 230 E 230
[240][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 117 bits (293), Expect = 7e-25
Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 5/172 (2%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
+T + + H+++ I G++E V EI++N+ EIVL+S + + G ++TA
Sbjct: 53 VTAIRIGGVNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQF 112
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFM 249
LP VE+++ TQ IATLTE L +E +IE+ GY + + + E+ + IDAVFM
Sbjct: 113 ELPSEVEVVNPTQPIATLTEGAKLEMEFRIEKGVGY-VPVERSSEEPAALDFLQIDAVFM 171
Query: 248 PVENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
PV N+S+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P
Sbjct: 172 PVTKVNYSVESIRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[241][TOP]
>UniRef100_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Thalassiosira
pseudonana RepID=RPOA_THAPS
Length = 313
Score = 117 bits (292), Expect = 9e-25
Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T IT + + ++S I G++E + EIL+NL IVL+S + + +QGP ITA
Sbjct: 53 TAITGVRIAGVKDEFSLIPGVREDILEILLNLKGIVLKSKTPNRQFGRLRLQGPAVITAS 112
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVF 252
I LPP +EII+ +IAT++ L IE KIE Y L S+ FED DA+F
Sbjct: 113 SIQLPPEIEIINPNHYIATISSSHILEIEFKIESGSKYRLANELFSDKFED-FIETDAIF 171
Query: 251 MPVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
MPV+ + + + Y N N +E L ++IWTNGS++P++A+ S +INLF
Sbjct: 172 MPVQKVDFKVENVYDNSNNIKERLLIDIWTNGSISPEQAIFSGSNLIINLF 222
[242][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 116 bits (291), Expect = 1e-24
Identities = 66/171 (38%), Positives = 97/171 (56%), Gaps = 4/171 (2%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
+T + + H+++ I G++E V EI++N+ EIVL+S + + G +TA +
Sbjct: 55 VTAIRIAGVNHEFATIPGVREDVLEIMLNMKEIVLKSYSDQAQIGRLVATSAGTVTAANF 114
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMP 246
LP VE++D TQ++ATLTE L +E +IE GY + S IDAVFMP
Sbjct: 115 ELPSEVEVVDPTQYVATLTEGSKLEMEFRIETGTGYKGVERGKDDGTSLDFLEIDAVFMP 174
Query: 245 VENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
V N+ + G E Q+ L LEIWTNGS PKEAL +A+ +++LF P
Sbjct: 175 VTKVNYIVEDIRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[243][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 116 bits (291), Expect = 1e-24
Identities = 62/177 (35%), Positives = 102/177 (57%), Gaps = 4/177 (2%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
+T + + H+++ I+G++E V E+++N+ EI L+S + + GP +TA
Sbjct: 53 VTALRIAGVNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAGQF 112
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMP 246
LP VEI+D +Q++ATL E L +E +IE+ +GY + S ID+VFMP
Sbjct: 113 DLPSEVEIVDPSQYVATLAEGSKLEMEFRIEKGKGYRAIERGKDDSTSLDFLQIDSVFMP 172
Query: 245 VENANHSIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
V N+S+ +G ++ L +EIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 173 VTKVNYSVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[244][TOP]
>UniRef100_A6MW22 DNA-directed RNA polymerase subunit alpha n=1 Tax=Rhodomonas salina
RepID=RPOA_RHDSA
Length = 314
Score = 116 bits (291), Expect = 1e-24
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 9/198 (4%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T I + + H++S I GI+E V EIL+NL E+VL+S + VQGP +T
Sbjct: 51 TAIVAVRIAGVSHEFSTIPGIREDVLEILLNLKEVVLKSQTKNPSVGRLRVQGPAIVTTS 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
++ LP VE+ID Q+IAT+ L +E +IE +GY L + + ++ S +DA+F
Sbjct: 111 NLELPSEVELIDPNQYIATICGNNILEMEFRIETGKGYHL-IERSIDETSIDFLQVDAIF 169
Query: 251 MPVENANHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV--- 84
MPV+ N+ N N QE L LE+WTNGS+ P++A+ Q + L L P +
Sbjct: 170 MPVKKVNYLTKDIRSNDNLLQEQLLLEVWTNGSIDPQDAVSQGGKILTELLHPLKEINFK 229
Query: 83 --EEETFYLENNQHQVTL 36
EE+T ++ +Q+ +
Sbjct: 230 SDEEDTVAEDSKINQILI 247
[245][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 116 bits (290), Expect = 2e-24
Identities = 72/171 (42%), Positives = 98/171 (57%), Gaps = 3/171 (1%)
Frame = -3
Query: 599 CITRAKS-ENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
C T A S E I H+Y IAG++ESVHE MNL EI L ++ + A I + GPG + AR
Sbjct: 59 CTTPAGSPERINHEYPAIAGVRESVHETSMNLKEIALTAHPSAAQEAHIPIVGPGKVAAR 118
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV 243
D + P ++ II QH AT+T I ++E GY + ++ S P DAV MP+
Sbjct: 119 DTVPPSSIGIIYPAQHAATVTRKIRSSTGSRVEGGCGYRRRNMVEYQKGSPPPDAVSMPI 178
Query: 242 ENANHSIH--SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
NAN+SIH +G +E+ E T+GS TP EA ++ASR+ NLF P
Sbjct: 179 RNANYSIHRLESHSGGIMKEMPPPEARTDGSPTPGEATYEASRDSANLFSP 229
[246][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 115 bits (288), Expect = 3e-24
Identities = 65/177 (36%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T +T + + H+++ I G++E +IL+ + E+VLRS + + +QGP +TA
Sbjct: 50 TAVTAVRIAGVNHEFATIPGVREDALDILLRMKELVLRSYSPDPQIGRLFIQGPATVTAI 109
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
+ + P VE+I+ +IATL+ L +E KIE+ +GY E S IDA+F
Sbjct: 110 NFEVSPDVEVINLDHYIATLSADATLEMEFKIEQGKGYRAIERGKDESASLDFLQIDAIF 169
Query: 251 MPVENANHSIHSYGNGN-EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
MPV N+++ +G +++ L LEIWTNGSLTP+EAL+Q + L++LF P V
Sbjct: 170 MPVRKVNYTVEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLKDV 226
[247][TOP]
>UniRef100_Q6J221 RNA polymerase alpha subunit (Fragment) n=1 Tax=Phaeodactylum sp.
Bohlin BA153065 RepID=Q6J221_9STRA
Length = 298
Score = 115 bits (288), Expect = 3e-24
Identities = 70/169 (41%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
I+ + I H++S I G++E + EIL+NL I+ S + T+ + VQGP +TA I
Sbjct: 53 ISAVRIAGITHEFSTIPGVREDILEILLNLKGIICTSQIQDTQFGHLKVQGPSVVTADLI 112
Query: 416 ILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSY-PIDAVFMP 246
LPP VEII+ +IAT+T L IE K GY L S F ED +Y +D +FMP
Sbjct: 113 QLPPEVEIINPNHYIATITTSNILEIEFKFVYGGGYHL-ASQKFCREDENYLQLDTIFMP 171
Query: 245 VENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
V+ + I + Y N E LFL+IWTNGS++P +AL A++ +I+LF
Sbjct: 172 VQKVDFKIENIYDATNNISERLFLDIWTNGSISPNDALESAAQVIIDLF 220
[248][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 115 bits (287), Expect = 4e-24
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T IT + + ++S I GI+E + EIL+NL +V++S + ++GP +TA
Sbjct: 53 TTITAVRIAGVQDEFSIIPGIREDILEILLNLKGVVVKSATPDISFGRLKIKGPAVVTAD 112
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVF 252
I LPP +EII+ +IAT++ L IE K ER GY L F D+S IDA+F
Sbjct: 113 SIQLPPNIEIINPNHYIATISTSNVLEIEFKFERGTGYKL-AGQTFCDKSEDFLQIDAIF 171
Query: 251 MPVENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
MP++ + I + Y N N E LFL+IWTNGS++P +A+ AS+ +I F
Sbjct: 172 MPIQKVDFKIENVYDNSNSITERLFLDIWTNGSISPDDAISYASKFIIEFF 222
[249][TOP]
>UniRef100_Q01569 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pyrenomonas
salina RepID=RPOA_PYRSA
Length = 314
Score = 115 bits (287), Expect = 4e-24
Identities = 66/176 (37%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
Frame = -3
Query: 602 TCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAR 423
T I + + H++S I GI+E V EIL+NL E+VL+S + + + VQGP +T
Sbjct: 51 TAIVAVRIAGVSHEFSTIPGIREDVLEILLNLKEVVLKSQIGTSGVGRLRVQGPAIVTTN 110
Query: 422 DIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDR--SYPIDAVFM 249
+ LP +E+ID Q+IAT+ L +E +IE +GY+L ++ E +DA+FM
Sbjct: 111 HLELPSEIELIDPNQYIATICGNNILEMEFRIETGKGYNLVERDSDESSIDFLQVDAIFM 170
Query: 248 PVENANH-SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
PV+ N+ S N QE L LE+WTNGS+ P++A+ QA + L L P +
Sbjct: 171 PVKKVNYLSKDIRSENNLIQEQLTLEVWTNGSIDPQDAVSQAGKILTELLFPLKEI 226
[250][TOP]
>UniRef100_A8ZV82 DNA-directed RNA polymerase subunit alpha n=1 Tax=Desulfococcus
oleovorans Hxd3 RepID=RPOA_DESOH
Length = 339
Score = 115 bits (287), Expect = 4e-24
Identities = 67/179 (37%), Positives = 107/179 (59%), Gaps = 11/179 (6%)
Frame = -3
Query: 596 ITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDI 417
IT K +N+ H+YS + G+ E V EI++NL E+ L+++ + I GPG +TA DI
Sbjct: 61 ITSVKIDNVMHEYSTVEGVLEDVSEIILNLKEVRLKTSTAAAKTIRIDAAGPGVVTAGDI 120
Query: 416 ILPPA-VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFED---RSYPIDAVFM 249
P VEI++ HIATL+E L +E+ ++ RGY+L +N E+ + PIDA+F
Sbjct: 121 ASPDGRVEILNPESHIATLSEGATLKMEMTVKVGRGYALAEANKDEETPVNTIPIDAMFS 180
Query: 248 PVENANHSIHSYGNGNEKQEI----LFLEIWTNGSLTPKEALHQASRNL---INLFIPF 93
P+ N+ + GN KQ+ L LE+WT+GS+ P++A+ A++ + +N+FI F
Sbjct: 181 PIRRVNYVV---GNSRVKQKTDFDKLTLEVWTDGSVLPEDAVAFAAKIMKEQMNVFINF 236