[UP]
[1][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 395 bits (1015), Expect = e-108
Identities = 193/194 (99%), Positives = 193/194 (99%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP
Sbjct: 66 KSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS
Sbjct: 126 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 44 VTLPFFPFHNRLVN 3
VTLPFFPFHNRLVN
Sbjct: 246 VTLPFFPFHNRLVN 259
[2][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 390 bits (1002), Expect = e-107
Identities = 189/194 (97%), Positives = 192/194 (98%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQ
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 44 VTLPFFPFHNRLVN 3
VTLPFFPFHNRLVN
Sbjct: 246 VTLPFFPFHNRLVN 259
[3][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 387 bits (995), Expect = e-106
Identities = 188/194 (96%), Positives = 191/194 (98%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEET YLENNQHQ
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYLENNQHQ 245
Query: 44 VTLPFFPFHNRLVN 3
VTLPFFPFHNRLVN
Sbjct: 246 VTLPFFPFHNRLVN 259
[4][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 386 bits (992), Expect = e-106
Identities = 187/194 (96%), Positives = 191/194 (98%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITA+DIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQ
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 44 VTLPFFPFHNRLVN 3
VTLP FPFHNRLVN
Sbjct: 246 VTLPLFPFHNRLVN 259
[5][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 385 bits (989), Expect = e-105
Identities = 187/194 (96%), Positives = 190/194 (97%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQ
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 44 VTLPFFPFHNRLVN 3
VTLP FPFHNRLVN
Sbjct: 246 VTLPLFPFHNRLVN 259
[6][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 385 bits (989), Expect = e-105
Identities = 187/194 (96%), Positives = 190/194 (97%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQ
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 44 VTLPFFPFHNRLVN 3
VTLP FPFHNRLVN
Sbjct: 246 VTLPLFPFHNRLVN 259
[7][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 381 bits (979), Expect = e-104
Identities = 185/194 (95%), Positives = 189/194 (97%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITA+DIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIATL EPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQ
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 44 VTLPFFPFHNRLVN 3
VTLP FPFHNRLVN
Sbjct: 246 VTLPLFPFHNRLVN 259
[8][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 380 bits (975), Expect = e-104
Identities = 183/194 (94%), Positives = 188/194 (96%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIATLTEPIDLCI LKIERNRGYSLK+SNN EDRSYPIDAVFMPV+NANHS
Sbjct: 126 SVEIVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQ
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 44 VTLPFFPFHNRLVN 3
VTLPFFPFHNR N
Sbjct: 246 VTLPFFPFHNRFFN 259
[9][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 376 bits (965), Expect = e-103
Identities = 182/194 (93%), Positives = 188/194 (96%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIAT+TE IDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHS
Sbjct: 126 SVEIVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF+LENNQHQ
Sbjct: 186 IHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHLENNQHQ 245
Query: 44 VTLPFFPFHNRLVN 3
VTLP FPFHNRLVN
Sbjct: 246 VTLPLFPFHNRLVN 259
[10][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 374 bits (959), Expect = e-102
Identities = 179/194 (92%), Positives = 188/194 (96%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNLNEIVL+SNLYGTRN ICVQGPGYITARDIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNPFICVQGPGYITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIATLTEPI+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHS
Sbjct: 126 SVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLINLFIPFLHVEEETFYLENNQHQ
Sbjct: 186 IHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 44 VTLPFFPFHNRLVN 3
VTLP FPFHN+LVN
Sbjct: 246 VTLPVFPFHNKLVN 259
[11][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 369 bits (946), Expect = e-100
Identities = 179/194 (92%), Positives = 184/194 (94%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNLNEIVLRSNLYG RNA+ICVQGPGYITARDIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGARNAIICVQGPGYITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIATLTE IDLCI LKIERNRGYSLK+ N FEDRSYPIDAVFMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQH
Sbjct: 186 IHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHH 245
Query: 44 VTLPFFPFHNRLVN 3
VTLP FPFHNRLVN
Sbjct: 246 VTLPLFPFHNRLVN 259
[12][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 360 bits (923), Expect = 6e-98
Identities = 175/193 (90%), Positives = 183/193 (94%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNL EIVLRSNLYGT NALICVQGPG ITARDIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGSITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIATLTEPIDLCI L+IERNRGYSLKM N+FED SYPIDA+FMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG GNEKQEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQH+
Sbjct: 186 IHSYGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHK 245
Query: 44 VTLPFFPFHNRLV 6
VTLP FPFHNRLV
Sbjct: 246 VTLPLFPFHNRLV 258
[13][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 354 bits (909), Expect = 2e-96
Identities = 172/193 (89%), Positives = 181/193 (93%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENIPHDYSNI GIQESVHEILMNL EIVLRSNLYGT NALICVQGPGYITARDIILPP
Sbjct: 66 KSENIPHDYSNIVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGYITARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIATLTEPIDLCI L+IERNRGYSLKM N FED SYPIDA+FMPV+NANHS
Sbjct: 126 SVEIMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG GNE QEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYLENN+ +
Sbjct: 186 IHSYGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNEDK 245
Query: 44 VTLPFFPFHNRLV 6
VTLP FPFHNRLV
Sbjct: 246 VTLPLFPFHNRLV 258
[14][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 340 bits (871), Expect = 6e-92
Identities = 161/192 (83%), Positives = 177/192 (92%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+DI+LPP
Sbjct: 66 KSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAFICVKGPGYVTAQDIVLPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA+LTEPIDL I L+IERNRGY +K NNF+D SYPIDAVFMPV+NANHS
Sbjct: 126 SVEIVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG GNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLH EEE FYLENNQH+
Sbjct: 186 IHSYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLENNQHK 245
Query: 44 VTLPFFPFHNRL 9
VTLPFFPFH+RL
Sbjct: 246 VTLPFFPFHDRL 257
[15][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 333 bits (855), Expect = 4e-90
Identities = 158/192 (82%), Positives = 174/192 (90%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS IAGIQESVHEILMNL EIVLRSNLYGTRNA IC +GPGY+TA+DIILPP
Sbjct: 68 KSEKIPHEYSIIAGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQDIILPP 127
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA+LTEPIDLCI L+IERNRGY +K NNF D SYPID VFMPV N NHS
Sbjct: 128 SVEIVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPVRNVNHS 187
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LEN+QH+
Sbjct: 188 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHLENSQHK 247
Query: 44 VTLPFFPFHNRL 9
VTLPFFPFH++L
Sbjct: 248 VTLPFFPFHDKL 259
[16][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 332 bits (852), Expect = 1e-89
Identities = 157/193 (81%), Positives = 171/193 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL EIVLR NLYGTRNA IC +GPGY+TA+DIILPP
Sbjct: 68 KSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPP 127
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQH+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFMPV NANHS
Sbjct: 128 SVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHS 187
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IH YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LENNQH
Sbjct: 188 IHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLENNQHD 247
Query: 44 VTLPFFPFHNRLV 6
VTLPFFPFH+RLV
Sbjct: 248 VTLPFFPFHDRLV 260
[17][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 325 bits (834), Expect = 1e-87
Identities = 156/192 (81%), Positives = 173/192 (90%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTRNA ICV+GPG +TA+DIILP
Sbjct: 66 KFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQDIILPT 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQ+IA LTEPI+LCI L+IERNRGY +K NF+D SYPIDAVFMPV NANHS
Sbjct: 126 SVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LENNQ++
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQYK 245
Query: 44 VTLPFFPFHNRL 9
VTLPFF FH+RL
Sbjct: 246 VTLPFFTFHDRL 257
[18][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 321 bits (822), Expect = 3e-86
Identities = 154/192 (80%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR A IC +GPGY+TA+DII PP
Sbjct: 60 KSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPP 119
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFMPV NANHS
Sbjct: 120 SVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHS 179
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+
Sbjct: 180 IHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHK 239
Query: 44 VTLPFFPFHNRL 9
TLP FH+RL
Sbjct: 240 STLPPLTFHDRL 251
[19][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 321 bits (822), Expect = 3e-86
Identities = 154/192 (80%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR A IC +GPGY+TA+DII PP
Sbjct: 66 KSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFMPV NANHS
Sbjct: 126 SVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+
Sbjct: 186 IHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHK 245
Query: 44 VTLPFFPFHNRL 9
TLP FH+RL
Sbjct: 246 STLPPLTFHDRL 257
[20][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 320 bits (819), Expect = 7e-86
Identities = 152/192 (79%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTRNA IC++GPGY+TA+DII PP
Sbjct: 66 KSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRNASICIRGPGYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VE +DNTQHIA LTEPID CIEL+IERNRGY +K NN +D SYPIDAVFMPV NANHS
Sbjct: 126 SVETVDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH +EE LE+NQ+
Sbjct: 186 IHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLEDNQNG 245
Query: 44 VTLPFFPFHNRL 9
VTLPFF FH+RL
Sbjct: 246 VTLPFFTFHDRL 257
[21][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 318 bits (815), Expect = 2e-85
Identities = 154/194 (79%), Positives = 168/194 (86%), Gaps = 1/194 (0%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL EIVLR NLYGTRNA IC +GPGY+TA+DIILPP
Sbjct: 68 KSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPP 127
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQH+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFMPV NANHS
Sbjct: 128 SVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHS 187
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IH YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFI FLH +EE +LENNQH
Sbjct: 188 IHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHLENNQHD 247
Query: 44 VTLP-FFPFHNRLV 6
VTL FFPFH RLV
Sbjct: 248 VTLHFFFPFHYRLV 261
[22][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 317 bits (811), Expect = 6e-85
Identities = 150/192 (78%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A IC +GPGY+TA+DIILPP
Sbjct: 66 KLEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FMPV N NHS
Sbjct: 126 SVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F LENNQH+
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHK 245
Query: 44 VTLPFFPFHNRL 9
VTLP F FH+ L
Sbjct: 246 VTLPLFTFHDIL 257
[23][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 317 bits (811), Expect = 6e-85
Identities = 149/192 (77%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE +PH+YS I GIQESVHEI+MNL EIVLRSNLYGT A +CV+GPGY+TA+DIILPP
Sbjct: 66 KFEKVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTSEASVCVKGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPID CI L+IERNRGY +K NF+D SYPIDAVFMPV NANHS
Sbjct: 126 YVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++NQH
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHT 245
Query: 44 VTLPFFPFHNRL 9
V L F FH++L
Sbjct: 246 VPLSPFTFHDKL 257
[24][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 316 bits (809), Expect = 1e-84
Identities = 150/192 (78%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A IC +GPGY+TA+DIILPP
Sbjct: 66 KSEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FMPV N NHS
Sbjct: 126 SVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F LENNQH+
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHK 245
Query: 44 VTLPFFPFHNRL 9
VTLP F FH+ L
Sbjct: 246 VTLPLFTFHDIL 257
[25][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 315 bits (807), Expect = 2e-84
Identities = 151/192 (78%), Positives = 170/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH++S IAGIQES+HEILMNL +VL+SNLYGT +A I V+GPGY+TA+DIILPP
Sbjct: 66 KSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEIIDNTQHIA+LTE IDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV NANHS
Sbjct: 126 FVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LE NQH+
Sbjct: 186 VHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHK 245
Query: 44 VTLPFFPFHNRL 9
VTLP F FH RL
Sbjct: 246 VTLPLFTFHGRL 257
[26][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 314 bits (805), Expect = 3e-84
Identities = 150/193 (77%), Positives = 169/193 (87%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQES+HEILMNL EIVL+SNLYGTR+A IC +GPGY+TA+DIILPP
Sbjct: 66 KSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFMPV NANHS
Sbjct: 126 SVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENNQH+
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHK 245
Query: 44 VTLPFFPFHNRLV 6
VTLP F FH+RL+
Sbjct: 246 VTLPLFTFHDRLL 258
[27][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 314 bits (805), Expect = 3e-84
Identities = 150/192 (78%), Positives = 170/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K + IPH++S I GIQES+HEILMNL EIVLRSNLYGT NA ICV+GPG +TA+DIILPP
Sbjct: 66 KSKKIPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHNASICVKGPGCVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFMPV NANHS
Sbjct: 126 SVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE+F+LE NQH+
Sbjct: 186 VHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHLEKNQHK 245
Query: 44 VTLPFFPFHNRL 9
+TLP F FH+RL
Sbjct: 246 ITLPLFAFHDRL 257
[28][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 314 bits (804), Expect = 4e-84
Identities = 151/192 (78%), Positives = 172/192 (89%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+DII PP
Sbjct: 66 KSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA+LTEPIDLCIEL+IERNRGY +K NN ++RSYPIDAVFMPV NANHS
Sbjct: 126 SVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWT+GSLTPKEAL++ASRNLI+LFIPFLH EE+ LE+NQ +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLEDNQSR 245
Query: 44 VTLPFFPFHNRL 9
VTLPFF FH+ L
Sbjct: 246 VTLPFFTFHDGL 257
[29][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 314 bits (804), Expect = 4e-84
Identities = 152/192 (79%), Positives = 170/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K EN+PH+YS IAGIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP
Sbjct: 40 KSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPP 99
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPIDLCI L+I+RNRGY +KM +NF+D SYPIDAVFMPV NANHS
Sbjct: 100 YVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNANHS 159
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEE LE+NQH
Sbjct: 160 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDNQHT 219
Query: 44 VTLPFFPFHNRL 9
V L FH++L
Sbjct: 220 VPLSPLTFHDKL 231
[30][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 314 bits (804), Expect = 4e-84
Identities = 149/192 (77%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS I GIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHS
Sbjct: 126 YVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+ YL++NQH
Sbjct: 186 IHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHT 245
Query: 44 VTLPFFPFHNRL 9
V L F FH++L
Sbjct: 246 VPLSPFTFHDKL 257
[31][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 314 bits (804), Expect = 4e-84
Identities = 153/192 (79%), Positives = 168/192 (87%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA LTEPI LCIEL+IERNRGY +K NNF++ SYPIDAVFMPV NANHS
Sbjct: 126 SVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGNE QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPF H EE +LENNQH+
Sbjct: 186 IHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HLENNQHK 242
Query: 44 VTLPFFPFHNRL 9
TLP F FH RL
Sbjct: 243 GTLPLFNFHGRL 254
[32][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 313 bits (803), Expect = 5e-84
Identities = 150/193 (77%), Positives = 168/193 (87%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQES+HEILMNL EIVLRSNLYGTR+A IC +GPG +TA+DIILPP
Sbjct: 66 KSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGSVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA LTEPI+LC+ELK+ERNRGY +K NN +D SY IDAVFMPV NANHS
Sbjct: 126 SVEIVDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEAL +ASRNLI+LFIPFLH EE+ LENNQ +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNLENNQQK 245
Query: 44 VTLPFFPFHNRLV 6
VTLP F FH+R V
Sbjct: 246 VTLPLFTFHDRFV 258
[33][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 313 bits (803), Expect = 5e-84
Identities = 149/192 (77%), Positives = 168/192 (87%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHS
Sbjct: 126 YVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+ YL++NQH
Sbjct: 186 IHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHT 245
Query: 44 VTLPFFPFHNRL 9
V L F FH++L
Sbjct: 246 VPLSPFTFHDKL 257
[34][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 313 bits (802), Expect = 6e-84
Identities = 150/192 (78%), Positives = 167/192 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE IPH+YS I GIQESVHEILMNL EIVLRSNLYGT NA ICV+GPG +TA+DI+LPP
Sbjct: 66 KFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFMPV NANHS
Sbjct: 126 SVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE +L NN++
Sbjct: 186 IHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGNNKYN 245
Query: 44 VTLPFFPFHNRL 9
VT P F FH +L
Sbjct: 246 VTFPLFTFHKKL 257
[35][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 312 bits (799), Expect = 1e-83
Identities = 149/192 (77%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K + IPH++S I GIQES+HEILMNL EIVLRSNLYGT +A ICV+GPG +TA+DIILPP
Sbjct: 66 KSKKIPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTHDASICVKGPGCVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFMPV NANHS
Sbjct: 126 SVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE F+LE NQH+
Sbjct: 186 VHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLEKNQHK 245
Query: 44 VTLPFFPFHNRL 9
+TLP F FH+RL
Sbjct: 246 ITLPLFAFHDRL 257
[36][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 311 bits (798), Expect = 2e-83
Identities = 148/192 (77%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS I GIQESVHEILMNL EI+LRSNLYGT +A ICV+GPG +TA+DIILPP
Sbjct: 66 KSEKVPHEYSTITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHS
Sbjct: 126 YVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++NQH
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHT 245
Query: 44 VTLPFFPFHNRL 9
V L F FH++L
Sbjct: 246 VPLSPFTFHDKL 257
[37][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 311 bits (798), Expect = 2e-83
Identities = 150/194 (77%), Positives = 170/194 (87%), Gaps = 2/194 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPG +TA+DIILPP
Sbjct: 66 KSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA L EPI+LCIELKIERNRGY ++ NNF+D SYP+DA+FMPV N NHS
Sbjct: 126 SVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE--ETFYLENNQ 51
IHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE E F+L+NN+
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNK 245
Query: 50 HQVTLPFFPFHNRL 9
+VTLP F FH +L
Sbjct: 246 KKVTLPLFTFHEKL 259
[38][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 311 bits (797), Expect = 2e-83
Identities = 148/192 (77%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS I GIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSEKVPHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTE ID CI L+I+RNRGY +K +NF+D SYPIDAVFMPV NANHS
Sbjct: 126 YVEIVDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++NQH
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHT 245
Query: 44 VTLPFFPFHNRL 9
V L F FH++L
Sbjct: 246 VPLSPFTFHDKL 257
[39][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 311 bits (796), Expect = 3e-83
Identities = 149/192 (77%), Positives = 166/192 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE IPH+YS I GIQESVHEILMNL EIVLRSNLYGT NA ICV+GPG +TA+DI+LPP
Sbjct: 66 KFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIIDNTQHIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFMPV NANHS
Sbjct: 126 SVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE +L N++
Sbjct: 186 IHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGKNKYN 245
Query: 44 VTLPFFPFHNRL 9
VT P F FH +L
Sbjct: 246 VTFPLFTFHKKL 257
[40][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 310 bits (795), Expect = 4e-83
Identities = 149/192 (77%), Positives = 169/192 (88%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YSNI GI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GP ++TA+DII PP
Sbjct: 66 KSEKIPHEYSNIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRHVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEIID TQHIA+LTEPIDLCI L+IERNRGY++K N +D YPIDAVFMPV NANHS
Sbjct: 126 SVEIIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE F L++NQ++
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFILKDNQNK 245
Query: 44 VTLPFFPFHNRL 9
V LP F FH+RL
Sbjct: 246 VALPLFTFHDRL 257
[41][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 309 bits (792), Expect = 9e-83
Identities = 149/193 (77%), Positives = 168/193 (87%), Gaps = 1/193 (0%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS + GIQESVHEILMNL EI+L+SNLYGT +A IC++GPGY+TA+DII PP
Sbjct: 66 KSEKIPHEYSTLVGIQESVHEILMNLKEIILKSNLYGTCDASICIRGPGYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANH 228
VEI+DNTQHIA+L EPIDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV NANH
Sbjct: 126 YVEIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANH 185
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQH 48
SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH EEE +L +NQH
Sbjct: 186 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLHLADNQH 245
Query: 47 QVTLPFFPFHNRL 9
V LP F FH +L
Sbjct: 246 TVPLPPFTFHEKL 258
[42][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 309 bits (792), Expect = 9e-83
Identities = 149/193 (77%), Positives = 170/193 (88%), Gaps = 1/193 (0%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS + GIQESVH+ILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSEKIPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANH 228
VE++DNTQHIA+LTEPI+LCI L+IERNRGY +K +NN +D SYPIDAVFMPV NANH
Sbjct: 126 YVEVVDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRNANH 185
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQH 48
SIHSYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L NNQH
Sbjct: 186 SIHSYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLANNQH 245
Query: 47 QVTLPFFPFHNRL 9
V LP F FH++L
Sbjct: 246 MVPLPPFTFHDKL 258
[43][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 307 bits (786), Expect = 4e-82
Identities = 149/193 (77%), Positives = 171/193 (88%), Gaps = 1/193 (0%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL +IVLRSNLYGT +ALICV+GPGY+TA+DI+LPP
Sbjct: 66 KSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFED-RSYPIDAVFMPVENANH 228
+VEI+DNTQHIA+LTEPIDL I L+IER+RGY++K N F+D YPIDAVFMPV NANH
Sbjct: 126 SVEIVDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMPVRNANH 185
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQH 48
SI SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASR+LI+LFIPFL E+E LENNQ+
Sbjct: 186 SIQSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLPLENNQY 245
Query: 47 QVTLPFFPFHNRL 9
+VTLPFF FH+RL
Sbjct: 246 KVTLPFFTFHDRL 258
[44][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 306 bits (784), Expect = 8e-82
Identities = 151/196 (77%), Positives = 171/196 (87%), Gaps = 4/196 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH++S IAGIQES+HEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSYPIDAVFMPVENAN 231
VEIIDNTQHIA+LT+ IDLCI L+IERNRGY +K +NNF +D SY IDAVFMPV NAN
Sbjct: 126 FVEIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMPVRNAN 185
Query: 230 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL--EN 57
HS+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+ FIPFLH EEE +L E
Sbjct: 186 HSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLHLEIEK 245
Query: 56 NQHQVTLPFFPFHNRL 9
NQH+VTLP F FH++L
Sbjct: 246 NQHKVTLPLFCFHDKL 261
[45][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 306 bits (783), Expect = 1e-81
Identities = 148/192 (77%), Positives = 166/192 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E PH+YS IAGIQESVHEILMNL EIVLRSNLYGT +A ICV+GPG +TA DIILPP
Sbjct: 66 KSEKAPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGCVTAEDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA LTEPID CI L+IERNRGY LK +NFED SYPIDAVFMPV NANHS
Sbjct: 126 SVEIVDNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ +H
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDGEHT 245
Query: 44 VTLPFFPFHNRL 9
+ L FH+++
Sbjct: 246 IPLSPLSFHDKV 257
[46][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 306 bits (783), Expect = 1e-81
Identities = 147/192 (76%), Positives = 167/192 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E + H+YS IAGIQESVHEILMNL EIV RSNLYGT +A ICV+GPGY+TA+DI+LPP
Sbjct: 66 KSEKVAHEYSTIAGIQESVHEILMNLKEIVFRSNLYGTCDASICVRGPGYVTAQDIVLPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA L EPI+LCI L+IERNRGY +K NF+D SYPIDAVFMP+ NAN+S
Sbjct: 126 YVEIVDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPIRNANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH+EE+ +LENNQH
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHLENNQHT 245
Query: 44 VTLPFFPFHNRL 9
V L F FH++L
Sbjct: 246 VPLAPFFFHDKL 257
[47][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 303 bits (777), Expect = 5e-81
Identities = 142/194 (73%), Positives = 167/194 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K + +PH+YS I GI+ES+HEI MNL EIVLRSNLYGTRNA ICV+GP Y+TA+DII PP
Sbjct: 66 KLDKVPHEYSTIVGIEESIHEIFMNLKEIVLRSNLYGTRNASICVRGPRYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA+LTEPIDLCIEL+I+R+RGY +K N +++ SYPIDAV MPV NANHS
Sbjct: 126 SVEIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE LE+N ++
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRLEDNPNR 245
Query: 44 VTLPFFPFHNRLVN 3
+PFF FH+ L N
Sbjct: 246 FNIPFFTFHDGLAN 259
[48][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 303 bits (776), Expect = 6e-81
Identities = 147/191 (76%), Positives = 166/191 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K +N+PH+YS IAGIQESVHEILMN EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSKNVPHEYSTIAGIQESVHEILMNFKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPIDLCI L+IERNRGY +KM +N +D SYPIDAVFMPV NANHS
Sbjct: 126 YVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNEK EILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEET LE+N H
Sbjct: 186 IHSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLEDNHHT 245
Query: 44 VTLPFFPFHNR 12
V L FH++
Sbjct: 246 VPLSPLTFHDK 256
[49][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 303 bits (775), Expect = 8e-81
Identities = 148/192 (77%), Positives = 166/192 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GP +TA+DIILPP
Sbjct: 66 KSEKIPHEYSTILGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRGVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPIDLCI L++ERNRGY +K NNF+D S+PIDA+FMPV N NHS
Sbjct: 126 YVEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH EE LE+NQH+
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEENV-NLEDNQHK 244
Query: 44 VTLPFFPFHNRL 9
V+LP F FHNRL
Sbjct: 245 VSLPLFTFHNRL 256
[50][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 302 bits (773), Expect = 1e-80
Identities = 147/192 (76%), Positives = 166/192 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GI+ESVHEILMNL EIVLRSNLYGT +A ICV+GP ITA+DII PP
Sbjct: 66 KSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTCDASICVKGPINITAKDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA+LTEP DLCI L+IERNRGY +K N ++ SYPIDAVFMPV NANHS
Sbjct: 126 SVEIVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE+NQ++
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIILEDNQNR 245
Query: 44 VTLPFFPFHNRL 9
VTLPFF FH+ L
Sbjct: 246 VTLPFFTFHDGL 257
[51][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 301 bits (772), Expect = 2e-80
Identities = 146/190 (76%), Positives = 164/190 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQES+HEILMNL EIVLRSNLYGTR A IC +GPGY+TA+DIILP
Sbjct: 66 KSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTREASICFKGPGYVTAQDIILP- 124
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VE+IDNTQHIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFMPV NANHS
Sbjct: 125 SVEVIDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHS 184
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGN+KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENNQH+
Sbjct: 185 IHSYVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHK 244
Query: 44 VTLPFFPFHN 15
+TLP F FH+
Sbjct: 245 MTLPLFTFHD 254
[52][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 301 bits (770), Expect = 3e-80
Identities = 147/195 (75%), Positives = 168/195 (86%), Gaps = 2/195 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQES+HEILMNL +IVLRSNLYGTR+A IC +GPGY+TARDIILPP
Sbjct: 66 KSEKIPHEYSTIVGIQESIHEILMNLKQIVLRSNLYGTRDASICFKGPGYVTARDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDA--VFMPVENAN 231
+VEI+DNTQHIA LTEPI+LCIEL+IER RGY K +N +D SY ID VFMPV +AN
Sbjct: 126 SVEIVDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFMPVIHAN 185
Query: 230 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
+SIHSY N NEKQEILFLEIWTNGSLTPKEAL++A+RNLI+LFIPFLH EEE F+ ENNQ
Sbjct: 186 YSIHSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENFHFENNQ 245
Query: 50 HQVTLPFFPFHNRLV 6
H+VTLP F FH+RLV
Sbjct: 246 HKVTLPLFAFHDRLV 260
[53][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 300 bits (769), Expect = 4e-80
Identities = 143/194 (73%), Positives = 168/194 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +P++Y I GI+ESVHEILMNL EIVLRS+LYGTR+A ICV+GP Y+TA+DII PP
Sbjct: 66 KSEKVPNEYYTIVGIEESVHEILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQDIIPPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHS
Sbjct: 126 SVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE+N ++
Sbjct: 186 IHSYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVLEDNPNR 245
Query: 44 VTLPFFPFHNRLVN 3
T+P F FH+RL N
Sbjct: 246 FTVPLFTFHDRLAN 259
[54][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 300 bits (768), Expect = 5e-80
Identities = 145/193 (75%), Positives = 165/193 (85%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL EIVLRS YGT +A ICV+GPG +TA+DII PP
Sbjct: 66 KSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSTFYGTCDASICVRGPGGVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+D TQHIA LTEPIDL IEL++ERNRGY +K NNF+D SYPID VFMPV N NHS
Sbjct: 126 YVEIVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVRNVNHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFL+ E+E F+LE+NQ +
Sbjct: 186 IHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLEDNQDR 245
Query: 44 VTLPFFPFHNRLV 6
VTLP F FH+RL+
Sbjct: 246 VTLPLFLFHDRLI 258
[55][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 298 bits (762), Expect = 3e-79
Identities = 147/192 (76%), Positives = 162/192 (84%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR A IC +GPGY+TA+DII PP
Sbjct: 66 KSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DNTQHIA L EPIDLCI L+IERNRGY+ SYPIDAVFMPV NANHS
Sbjct: 126 SVEIVDNTQHIARLMEPIDLCIGLQIERNRGYN---------GSYPIDAVFMPVRNANHS 176
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNG+E+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+
Sbjct: 177 IHSYGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHK 236
Query: 44 VTLPFFPFHNRL 9
TLP FH+RL
Sbjct: 237 GTLPPLTFHDRL 248
[56][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 297 bits (761), Expect = 4e-79
Identities = 144/194 (74%), Positives = 166/194 (85%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS I GI+ESVHEILMNL EIVLRSNLYGTR A ICV+GP ITA DIILP
Sbjct: 66 KSEKVPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTREASICVKGPKTITAEDIILPA 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIATLTEP+DL I L+I+R+RGY ++ +NN +D SYPIDAVFMPV NANHS
Sbjct: 126 SVEIVDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I+SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE N+ +
Sbjct: 186 IYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLEENKSR 245
Query: 44 VTLPFFPFHNRLVN 3
TLP F FH++LVN
Sbjct: 246 FTLPLFTFHDKLVN 259
[57][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 297 bits (761), Expect = 4e-79
Identities = 142/194 (73%), Positives = 164/194 (84%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF+ + H+YS I GI+ESVHEILMNL EIVLRSNLYGT +A ICV+GP +TA+DII PP
Sbjct: 66 KFDKVTHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTLDASICVRGPRSVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA LTEPIDLCI L+IER+RGY LK NN++D SYPID VFMPV NANHS
Sbjct: 126 SVEIVDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNG EKQEILFLEIWTNGSLTPKEAL++ASRNLINLFIPFLH EE+ LE++++
Sbjct: 186 IHSYGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILLEDSENI 245
Query: 44 VTLPFFPFHNRLVN 3
T+P F FHN L N
Sbjct: 246 STVPLFTFHNELAN 259
[58][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 296 bits (759), Expect = 6e-79
Identities = 145/195 (74%), Positives = 169/195 (86%), Gaps = 3/195 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K + IPH+YS + GIQESVH+ILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSKKIPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANH 228
VE++DNTQHIA+LTEPI+L I L+IER+RGY +K +NNF+D SYPIDAVFMP+ NANH
Sbjct: 126 YVEVVDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRNANH 185
Query: 227 SIHSY--GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENN 54
SIHSY GNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L +N
Sbjct: 186 SIHSYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLADN 245
Query: 53 QHQVTLPFFPFHNRL 9
QH V LP F FH+ L
Sbjct: 246 QHMVPLPPFTFHDNL 260
[59][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 296 bits (759), Expect = 6e-79
Identities = 144/191 (75%), Positives = 165/191 (86%), Gaps = 1/191 (0%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GPGY+TA+DII PP
Sbjct: 66 KSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA+LTEP+D CI L+IE NRGY +K NN + SYPIDAVFMPV NANHS
Sbjct: 126 SVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ-H 48
IHSYGNGNE QEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ L++NQ +
Sbjct: 186 IHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLKDNQKN 245
Query: 47 QVTLPFFPFHN 15
VTLPFF FH+
Sbjct: 246 GVTLPFFTFHD 256
[60][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 296 bits (758), Expect = 8e-79
Identities = 139/194 (71%), Positives = 166/194 (85%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS I GI+ESVHEILMNL EIV RS+LYGTR A ICV+GP Y+TA+DII PP
Sbjct: 66 KSEKVPHEYSTIVGIEESVHEILMNLKEIVFRSHLYGTRGASICVRGPRYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+I+D TQ+IA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHS
Sbjct: 126 SVKIVDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGS TPKEAL++ASRNLI+LF+PFLH EE+ +E+NQ++
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINVEDNQNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F FH+ L N
Sbjct: 246 ATAPLFTFHDGLTN 259
[61][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 296 bits (758), Expect = 8e-79
Identities = 143/196 (72%), Positives = 170/196 (86%), Gaps = 2/196 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS I GI+ESVHEILMNL EIVL+SNLYGTR+A ICV+GP Y+TA+DII PP
Sbjct: 66 KSEKVPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA+LTEPI+LCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHS
Sbjct: 126 SVEIVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQ 51
IHSYG+GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ + LE+NQ
Sbjct: 186 IHSYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQ 245
Query: 50 HQVTLPFFPFHNRLVN 3
++ T+ F H+RL N
Sbjct: 246 NRFTVSPFTLHDRLGN 261
[62][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 296 bits (757), Expect = 1e-78
Identities = 142/194 (73%), Positives = 166/194 (85%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS IAGI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GP +TA+DII PP
Sbjct: 66 KSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VE++D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV NANHS
Sbjct: 126 SVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE E NQ++
Sbjct: 186 IHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNR 245
Query: 44 VTLPFFPFHNRLVN 3
T+P F F +RL N
Sbjct: 246 FTVPPFTFPDRLAN 259
[63][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 296 bits (757), Expect = 1e-78
Identities = 142/194 (73%), Positives = 166/194 (85%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS IAGI+ESVHEILMNL EIVLRSNLYGTR+A ICV+GP +TA+DII PP
Sbjct: 66 KSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VE++D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV NANHS
Sbjct: 126 SVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE E NQ++
Sbjct: 186 IHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNR 245
Query: 44 VTLPFFPFHNRLVN 3
T+P F F +RL N
Sbjct: 246 FTVPPFTFPDRLAN 259
[64][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 295 bits (755), Expect = 2e-78
Identities = 142/194 (73%), Positives = 166/194 (85%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS I GI+ESVHEIL+NL EIVLRSNLYG R+A ICV+GP Y+TA+DIILPP
Sbjct: 66 KSERVPHEYSTIIGIEESVHEILLNLKEIVLRSNLYGVRDASICVRGPRYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA LTEPIDL IEL+I+R+RGY ++ +NN +D SYPIDAV MPV NANHS
Sbjct: 126 SVEIVDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N+++
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
TLPF F +RL N
Sbjct: 246 FTLPFLTFQDRLTN 259
[65][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 294 bits (753), Expect = 3e-78
Identities = 141/193 (73%), Positives = 163/193 (84%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GI+ESVHEI MNL EIVL+SN+YG ++A I +GPGYITA+DIILPP
Sbjct: 66 KSEKIPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGIQDASISFKGPGYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DN QHIA +TEP+ LCIELKIERNRGY +K NF+D SY IDA FMPV N N+S
Sbjct: 126 SVEIVDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI LFIPFLH EE+ F+LE NQH+
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHLEKNQHK 245
Query: 44 VTLPFFPFHNRLV 6
VTLP F FH+ LV
Sbjct: 246 VTLPLFTFHDILV 258
[66][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 293 bits (751), Expect = 5e-78
Identities = 141/193 (73%), Positives = 164/193 (84%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E IPH+YS I GI+ESVHEI MNL EIVL+SN+YGT++A I +GPGYITA+DIILPP
Sbjct: 66 KSEKIPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGTQDASISFKGPGYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+DN QHIA +TEP++LCIELKIERNRGY +K NF+D SY IDA FMPV N N+S
Sbjct: 126 SVEIVDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI+LFIPFLH EEE F LE +H+
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNLEKKKHK 245
Query: 44 VTLPFFPFHNRLV 6
VTLP F FH+ LV
Sbjct: 246 VTLPLFTFHDILV 258
[67][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 293 bits (750), Expect = 7e-78
Identities = 138/194 (71%), Positives = 165/194 (85%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K + +PH+YS I GI+ESVHEILMNL +IV RS+LYGT +A ICV+GP ++TA+DII PP
Sbjct: 66 KSDKVPHEYSTIVGIEESVHEILMNLKKIVFRSDLYGTLDASICVRGPRHVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA LTEP+DLCIELKIER RGY ++ NN++D SYPIDAV MPV NANHS
Sbjct: 126 SVEIVDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ +E+N +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINIEDNLKR 245
Query: 44 VTLPFFPFHNRLVN 3
T+PFF FH+ L N
Sbjct: 246 ATVPFFTFHDGLDN 259
[68][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 293 bits (749), Expect = 9e-78
Identities = 142/187 (75%), Positives = 161/187 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS + GIQESVHEILMNL EIVLRSNLYGT +A ICV+GPGY+TA+DII PP
Sbjct: 66 KSEKLPHEYSTLVGIQESVHEILMNLKEIVLRSNLYGTCDAAICVKGPGYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEIIDNTQHIA+LTEPI+LCI L+IERNRGY +K + NF+D SYPIDAVFMPV N NHS
Sbjct: 126 YVEIIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPVRNVNHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I+SYG GN+K EILFLEIWTNGSLTPKEALH+A+RNLI+LFIPFLH EEE LE+NQH
Sbjct: 186 IYSYGTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDLEDNQHM 245
Query: 44 VTLPFFP 24
LPF P
Sbjct: 246 --LPFRP 250
[69][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 292 bits (747), Expect = 1e-77
Identities = 140/194 (72%), Positives = 162/194 (83%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E + H+YS I GI+ESVHEIL+NL EI+LRSNLYG +A ICV+GP Y+TA+DII PP
Sbjct: 66 KSEKVAHEYSTIVGIEESVHEILLNLKEIILRSNLYGVIDASICVRGPRYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+D TQHIA LTEPIDLCIEL+I+R+RGY +K +NN +D SYPIDAV MPV NANHS
Sbjct: 126 YVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N+++
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
LP F F NRL N
Sbjct: 246 FPLPLFTFQNRLTN 259
[70][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 290 bits (743), Expect = 4e-77
Identities = 143/192 (74%), Positives = 162/192 (84%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE I H+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+DIILPP
Sbjct: 66 KFEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIATLTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHS
Sbjct: 126 YVEIVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+NQH
Sbjct: 186 IHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHM 243
Query: 44 VTLPFFPFHNRL 9
+ LP F F+++L
Sbjct: 244 IPLPPFTFYDKL 255
[71][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 290 bits (742), Expect = 6e-77
Identities = 136/190 (71%), Positives = 164/190 (86%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH++S I GI+ESVHEI+MNL EIVLRSNLYGT +A IC++GP Y+TA+DIILPP
Sbjct: 66 KSEKVPHEFSTIVGIEESVHEIVMNLKEIVLRSNLYGTLDASICIRGPRYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA LTE +DLCI+L+IER+RGYS+K +N ED SYPIDA+FMPV NANHS
Sbjct: 126 SVEIVDATQHIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
+HSYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +LE+N +
Sbjct: 186 VHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHLEDNANG 245
Query: 44 VTLPFFPFHN 15
V L F FH+
Sbjct: 246 VPLALFTFHD 255
[72][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 288 bits (738), Expect = 2e-76
Identities = 145/192 (75%), Positives = 159/192 (82%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K EN+PH+YS IAGIQESV EILMNL EIVLRSNLYGT A IC +GPGY+TA+DIILPP
Sbjct: 51 KSENVPHEYSTIAGIQESVPEILMNLKEIVLRSNLYGTCGASICARGPGYVTAQDIILPP 110
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI DNTQHIA LTEPI CI L+IER+RGY +K + F+DRSYPIDAVFMPV N NHS
Sbjct: 111 CVEIGDNTQHIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNVNHS 170
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE LENNQ
Sbjct: 171 IHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLENNQDT 228
Query: 44 VTLPFFPFHNRL 9
V+ F FH +L
Sbjct: 229 VSFSPFSFHEKL 240
[73][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 288 bits (738), Expect = 2e-76
Identities = 139/192 (72%), Positives = 160/192 (83%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E I H+YS I GIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPP
Sbjct: 66 KSEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV NANHS
Sbjct: 126 SVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENN+H+
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHK 245
Query: 44 VTLPFFPFHNRL 9
VTLP F H+ L
Sbjct: 246 VTLPLFTCHDLL 257
[74][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 286 bits (732), Expect = 8e-76
Identities = 138/194 (71%), Positives = 161/194 (82%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS + GI+ESVHEIL NL EIVLRSNLY R+A ICV+GP Y+TA+DII PP
Sbjct: 66 KSEKVPHEYSTVVGIEESVHEILFNLKEIVLRSNLYEIRDASICVRGPRYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+D TQ+IA LTEPIDLCIEL+I+R+RGY +K N +D SYPIDAVFMPV NANHS
Sbjct: 126 YVEIVDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINFEENKNK 245
Query: 44 VTLPFFPFHNRLVN 3
TLP F +RL N
Sbjct: 246 FTLPPLTFQDRLSN 259
[75][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 286 bits (731), Expect = 1e-75
Identities = 145/188 (77%), Positives = 159/188 (84%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF N H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I +GPGY+TA DIILPP
Sbjct: 66 KFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAEDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV+NANHS
Sbjct: 126 HVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E LE+ H
Sbjct: 186 IHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADH- 242
Query: 44 VTLPFFPF 21
T+P PF
Sbjct: 243 -TIPLSPF 249
[76][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 286 bits (731), Expect = 1e-75
Identities = 136/192 (70%), Positives = 160/192 (83%)
Frame = -3
Query: 578 ENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAV 399
E +PH+YS I GI+ESVHEIL+NL EIVLRSN+YG R+A IC +GP Y+TA+DII PP+V
Sbjct: 68 EKVPHEYSTIIGIEESVHEILLNLKEIVLRSNIYGVRDASICARGPKYVTAQDIISPPSV 127
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEPIDLCI L+I R+RGY K + N ++ SYPIDAV MPV NANHSIH
Sbjct: 128 EIVDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE + N+++ T
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFKENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
LP F F +RL N
Sbjct: 248 LPIFTFQDRLTN 259
[77][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 286 bits (731), Expect = 1e-75
Identities = 145/188 (77%), Positives = 159/188 (84%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF N H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I +GPGY+TA DIILPP
Sbjct: 66 KFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAEDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV+NANHS
Sbjct: 126 HVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E LE+ H
Sbjct: 186 IHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADH- 242
Query: 44 VTLPFFPF 21
T+P PF
Sbjct: 243 -TIPLSPF 249
[78][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 285 bits (729), Expect = 2e-75
Identities = 143/188 (76%), Positives = 159/188 (84%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF N H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I ++GPGY+TA DIILPP
Sbjct: 66 KFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAEDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VE++D+TQHIA L EPIDLCI LKIERNRGY LK NFED SYPIDAVFMPV+NANHS
Sbjct: 126 HVEVVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E +LE+
Sbjct: 186 IHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHLEDADR- 242
Query: 44 VTLPFFPF 21
T+P PF
Sbjct: 243 -TIPLSPF 249
[79][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 285 bits (729), Expect = 2e-75
Identities = 141/192 (73%), Positives = 162/192 (84%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF H+YS IAGIQESVHEI MNL EIVLRSNLYGT +A I ++GPG++TA+DIILPP
Sbjct: 66 KFAKASHEYSTIAGIQESVHEIFMNLKEIVLRSNLYGTCDASISIKGPGHVTAKDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV NANHS
Sbjct: 126 HVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ H
Sbjct: 186 IHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHT 243
Query: 44 VTLPFFPFHNRL 9
++L F ++++
Sbjct: 244 ISLSPFTVYDKV 255
[80][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 284 bits (727), Expect = 3e-75
Identities = 141/192 (73%), Positives = 161/192 (83%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K + I H+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSDKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTYEASICVRGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHS
Sbjct: 126 YVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+NQH
Sbjct: 186 IHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHI 243
Query: 44 VTLPFFPFHNRL 9
V LP F F+++L
Sbjct: 244 VPLPPFTFYDKL 255
[81][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 284 bits (726), Expect = 4e-75
Identities = 141/192 (73%), Positives = 161/192 (83%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E I H+Y+ I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSEKISHEYATIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHS
Sbjct: 126 YVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+NQH
Sbjct: 186 IHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSLEDNQHI 243
Query: 44 VTLPFFPFHNRL 9
V LP F F+++L
Sbjct: 244 VPLPPFTFYDKL 255
[82][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 283 bits (725), Expect = 5e-75
Identities = 138/194 (71%), Positives = 161/194 (82%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS I GI+ESVHEI +NL EIVL NLYG R+A ICV+GP Y+TA+DII PP
Sbjct: 66 KSEKVPHEYSTIVGIEESVHEIFINLKEIVL--NLYGVRDASICVRGPRYVTAQDIISPP 123
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA LTEPIDL IEL+I+R+RGY + +NN +D SYPIDAV MPV NANHS
Sbjct: 124 SVEIVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNANHS 183
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE + E N+++
Sbjct: 184 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHFEENKNR 243
Query: 44 VTLPFFPFHNRLVN 3
TLP F F NRL N
Sbjct: 244 FTLPLFTFQNRLTN 257
[83][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 283 bits (724), Expect = 7e-75
Identities = 141/192 (73%), Positives = 160/192 (83%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E I H+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+DIILPP
Sbjct: 66 KSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHS
Sbjct: 126 YVEILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NGN +EILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH +EE LE NQH
Sbjct: 186 IHSYENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNLEGNQHM 243
Query: 44 VTLPFFPFHNRL 9
V LP F F+++L
Sbjct: 244 VPLPPFTFYDKL 255
[84][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 282 bits (722), Expect = 1e-74
Identities = 135/192 (70%), Positives = 161/192 (83%)
Frame = -3
Query: 578 ENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAV 399
EN+ H+YS IAGI+ESVHEIL+NL +IVLRSNLYG RNA ICV+GP YITA+DII PP+V
Sbjct: 68 ENVLHEYSTIAGIEESVHEILLNLKDIVLRSNLYGVRNASICVRGPKYITAQDIISPPSV 127
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEPI+LCIEL+I+R+RGY +K +N+ D SYPID V MPV NANHSIH
Sbjct: 128 EIVDTTQHIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+L IPFLH EEE + N+++
Sbjct: 188 SYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNFKENENRWN 247
Query: 38 LPFFPFHNRLVN 3
LP F F ++ N
Sbjct: 248 LPPFSFQDKFTN 259
[85][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 281 bits (719), Expect = 3e-74
Identities = 134/196 (68%), Positives = 163/196 (83%), Gaps = 2/196 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K + +PH+YS + GI+ESVHEILMNL ++V RS+LYGT +A ICV+GP ++TA+DII PP
Sbjct: 66 KSDKVPHEYSTVVGIEESVHEILMNLKKMVFRSDLYGTLDASICVRGPRHVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA LTEP+DLCIELKIER RGY + NN++D SYPIDAV MPV NANHS
Sbjct: 126 SVEIVDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF--YLENNQ 51
IHSYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ +E+N
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINRNMEDNL 245
Query: 50 HQVTLPFFPFHNRLVN 3
+ ++PFF F + L N
Sbjct: 246 KRASVPFFAFDDGLDN 261
[86][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 278 bits (710), Expect = 3e-73
Identities = 138/196 (70%), Positives = 164/196 (83%), Gaps = 2/196 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K + IPH+YS I GI+ESVH+ILMNL EIVLRSNLYGT +A I V+GP +TA+DII PP
Sbjct: 66 KSDKIPHEYSTIVGIEESVHQILMNLKEIVLRSNLYGTCDASIFVRGPRCVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSY--PIDAVFMPVENAN 231
+V+++D TQHIA+LTEPIDLCI L+IER+RGY +K NN +D SY PI+AV MPV NAN
Sbjct: 126 SVKMVDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSMPVRNAN 185
Query: 230 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH+AS NLI+LFIPFLH EEE LE++
Sbjct: 186 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDINLEDSL 245
Query: 50 HQVTLPFFPFHNRLVN 3
++ TLPFF F ++L N
Sbjct: 246 NRGTLPFFTFQDKLAN 261
[87][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 276 bits (707), Expect = 7e-73
Identities = 140/188 (74%), Positives = 157/188 (83%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF N H+YS IAGIQESVHEILMNL EIVLRSNLYGT +A I ++GPGY+TA DIILPP
Sbjct: 66 KFANTSHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAEDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+D+TQHIA LTEPI+ I LKIERN GY +K NFED SYPIDA+FMPV NANHS
Sbjct: 126 HVEIVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPVRNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I+SY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ H
Sbjct: 186 INSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADH- 242
Query: 44 VTLPFFPF 21
T+P PF
Sbjct: 243 -TIPLSPF 249
[88][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 276 bits (707), Expect = 7e-73
Identities = 132/192 (68%), Positives = 161/192 (83%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E +PH+YS I GI+ESVHEILMNL EI++RS+LYGTR+A ICV+GP Y+TA+DII PP
Sbjct: 66 KSERVPHEYSTIVGIEESVHEILMNLKEIIVRSDLYGTRDAFICVRGPKYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+I+D TQHIA++TEPI+ CI L+IERNRGY + +N +D SYPIDAV MPV NAN+S
Sbjct: 126 SVKIVDTTQHIASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSMPVRNANYS 183
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I YGN NEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +L+++Q+
Sbjct: 184 IQCYGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHLDDDQNI 243
Query: 44 VTLPFFPFHNRL 9
T PFFPFH L
Sbjct: 244 FTAPFFPFHEGL 255
[89][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 275 bits (703), Expect = 2e-72
Identities = 133/194 (68%), Positives = 159/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D +Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[90][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 275 bits (702), Expect = 2e-72
Identities = 133/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[91][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 274 bits (700), Expect = 4e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[92][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 273 bits (699), Expect = 6e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[93][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 273 bits (699), Expect = 6e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[94][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 273 bits (699), Expect = 6e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[95][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 273 bits (699), Expect = 6e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[96][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 273 bits (699), Expect = 6e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[97][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 273 bits (699), Expect = 6e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[98][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 273 bits (699), Expect = 6e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[99][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 273 bits (699), Expect = 6e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[100][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 273 bits (699), Expect = 6e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[101][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 273 bits (699), Expect = 6e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[102][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 273 bits (698), Expect = 7e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[103][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 273 bits (698), Expect = 7e-72
Identities = 131/194 (67%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A IC++GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[104][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 273 bits (698), Expect = 7e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[105][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 273 bits (698), Expect = 7e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNLNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[106][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 273 bits (698), Expect = 7e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFKKRLTN 259
[107][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 273 bits (698), Expect = 7e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[108][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 273 bits (698), Expect = 7e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFKKRLTN 259
[109][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 273 bits (697), Expect = 9e-72
Identities = 132/194 (68%), Positives = 157/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF +PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[110][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 273 bits (697), Expect = 9e-72
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPKYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[111][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 272 bits (696), Expect = 1e-71
Identities = 132/194 (68%), Positives = 157/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF +PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[112][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 272 bits (696), Expect = 1e-71
Identities = 132/194 (68%), Positives = 157/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF +PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[113][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 272 bits (695), Expect = 2e-71
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPPFTFQKRLTN 259
[114][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 271 bits (694), Expect = 2e-71
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPPFTFKKRLTN 259
[115][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 271 bits (694), Expect = 2e-71
Identities = 131/194 (67%), Positives = 157/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VE +D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[116][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 271 bits (693), Expect = 3e-71
Identities = 130/194 (67%), Positives = 156/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQ IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+S
Sbjct: 126 SVEIVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
+T P F R N
Sbjct: 246 LTPPLLTFQKRFTN 259
[117][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 271 bits (693), Expect = 3e-71
Identities = 132/194 (68%), Positives = 158/194 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A I V+GP YITA+DIILPP
Sbjct: 71 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASISVKGPRYITAQDIILPP 130
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D +Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 131 SVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 190
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 191 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 250
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 251 FTPPLFTFQKRLTN 264
[118][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 271 bits (693), Expect = 3e-71
Identities = 131/194 (67%), Positives = 157/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA L EPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[119][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 271 bits (693), Expect = 3e-71
Identities = 131/194 (67%), Positives = 157/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDA MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[120][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 271 bits (692), Expect = 4e-71
Identities = 132/185 (71%), Positives = 157/185 (84%), Gaps = 3/185 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE IPH+Y+ + GIQESV+EI+MNL EIVLRSNLYGTR+A ICV+GP +TA+DIILPP
Sbjct: 66 KFEKIPHEYTTLVGIQESVYEIVMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVFMPVENA 234
+V I+DNTQHI TLTEPID C+ L+IERNRGYS+K+ +N+ +DR YPIDAVFMPV+N
Sbjct: 126 SVAIVDNTQHIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVFMPVKNV 185
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENN 54
NHSIH+Y NG+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE +LENN
Sbjct: 186 NHSIHAYENGS--HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENSHLENN 243
Query: 53 QHQVT 39
Q+Q T
Sbjct: 244 QNQHT 248
[121][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 270 bits (691), Expect = 5e-71
Identities = 129/194 (66%), Positives = 156/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFWNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQ IA L EP+D CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+S
Sbjct: 126 SVEIVDTTQPIANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
+T P F R N
Sbjct: 246 LTPPLLTFQKRFTN 259
[122][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 270 bits (690), Expect = 6e-71
Identities = 133/194 (68%), Positives = 155/194 (79%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K +PH+YS I GI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DII PP
Sbjct: 66 KSGKVPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQHIA LTEPIDLCIEL+I+R+RGY + N +D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I+S GN NEK EILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N+++
Sbjct: 186 IYSCGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
TLP F RL N
Sbjct: 246 FTLPLLTFQKRLTN 259
[123][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 270 bits (690), Expect = 6e-71
Identities = 132/194 (68%), Positives = 156/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 246 FTPPLLTFQKRLTN 259
[124][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 270 bits (689), Expect = 8e-71
Identities = 130/194 (67%), Positives = 157/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A IC++GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNG EK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[125][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 269 bits (688), Expect = 1e-70
Identities = 129/194 (66%), Positives = 155/194 (79%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D TQ IA L EP+D CIEL+I+R+R Y ++ N +D SYPIDAVFMPV N N+S
Sbjct: 126 SVEIVDTTQPIANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
+T P F R N
Sbjct: 246 LTPPLLTFQKRFTN 259
[126][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 269 bits (687), Expect = 1e-70
Identities = 130/194 (67%), Positives = 157/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP ITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILVNLKEIVLRSNLYGVRDASICVKGPRCITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VE++D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+S
Sbjct: 126 SVEVVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[127][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 268 bits (684), Expect = 3e-70
Identities = 130/194 (67%), Positives = 156/194 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M V N N+S
Sbjct: 126 SVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 246 FTPPLLTFQKRLTN 259
[128][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 267 bits (683), Expect = 4e-70
Identities = 128/194 (65%), Positives = 155/194 (79%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF N+PH+YS I GI+ES+ EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+S
Sbjct: 126 SVEIVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E ++++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEESKNR 245
Query: 44 VTLPFFPFHNRLVN 3
+T P F R N
Sbjct: 246 LTPPLLTFQKRFTN 259
[129][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 267 bits (682), Expect = 5e-70
Identities = 132/192 (68%), Positives = 156/192 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E H+YS I GIQESVHEILMNL EIVLRSNLYGT +A IC++GP ++TA+DIILPP
Sbjct: 66 KSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYGTCDASICIKGPRHVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
V+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D YPIDA+FMPV+NANHS
Sbjct: 126 HVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY GNEKQEILFLEIWTNGSLTPKEALH+A+R LI+ FIPF H+EEE YL + +H
Sbjct: 186 IHSY--GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYLADAEHT 243
Query: 44 VTLPFFPFHNRL 9
+ L F+N++
Sbjct: 244 IPLSSLIFYNKV 255
[130][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 267 bits (682), Expect = 5e-70
Identities = 130/194 (67%), Positives = 155/194 (79%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF + PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSXPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPI V MPV N N+S
Sbjct: 126 SVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F F RL N
Sbjct: 246 FTPPLFTFQKRLTN 259
[131][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 266 bits (679), Expect = 1e-69
Identities = 130/194 (67%), Positives = 155/194 (79%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++
Sbjct: 186 IFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F +L N
Sbjct: 246 FTPPLLTFQKKLTN 259
[132][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 265 bits (678), Expect = 1e-69
Identities = 135/192 (70%), Positives = 155/192 (80%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE +PH+YS I GIQESVHEILMNL EIVLRSNLYGT A ICV+GPGY+TA+DII PP
Sbjct: 66 KFEKVPHEYSTIRGIQESVHEILMNLKEIVLRSNLYGTCEASICVKGPGYVTAQDIISPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
VEI+DNTQHIA+LTEPI+L I L+IE+NR LK N F+D SY I AV MPV + N+S
Sbjct: 126 YVEIVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPVRHMNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHS GNG KQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EE LENNQ +
Sbjct: 186 IHSSGNG--KQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEGN--LENNQDR 241
Query: 44 VTLPFFPFHNRL 9
+ P F F+++L
Sbjct: 242 IPFPSFTFYDKL 253
[133][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 263 bits (673), Expect = 6e-69
Identities = 130/194 (67%), Positives = 153/194 (78%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG RNA ICV+GP YITA+DIILPP
Sbjct: 46 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPP 105
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 106 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 165
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + NQ++
Sbjct: 166 IFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENQNR 225
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 226 FTSPLLSFQKRLTN 239
[134][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 262 bits (670), Expect = 1e-68
Identities = 130/192 (67%), Positives = 156/192 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E H+YS I GIQESVHEILMNL EIVLRSNLY + +A IC++GP ++TA+DIILPP
Sbjct: 66 KSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
V+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FMPV+NANHS
Sbjct: 126 HVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE YL + +H
Sbjct: 186 IHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHT 243
Query: 44 VTLPFFPFHNRL 9
+ LP F+N++
Sbjct: 244 IXLPPLIFYNKV 255
[135][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 262 bits (670), Expect = 1e-68
Identities = 130/192 (67%), Positives = 156/192 (81%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E H+YS I GIQESVHEILMNL EIVLRSNLY + +A IC++GP ++TA+DIILPP
Sbjct: 66 KSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
V+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FMPV+NANHS
Sbjct: 126 HVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE YL + +H
Sbjct: 186 IHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHT 243
Query: 44 VTLPFFPFHNRL 9
+ LP F+N++
Sbjct: 244 IPLPPLIFYNKV 255
[136][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 262 bits (669), Expect = 2e-68
Identities = 129/194 (66%), Positives = 153/194 (78%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG RNA ICV+GP YITA+DIILPP
Sbjct: 46 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPP 105
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 106 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 165
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++
Sbjct: 166 IFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 225
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 226 FTSPLLSFQKRLTN 239
[137][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 262 bits (669), Expect = 2e-68
Identities = 132/185 (71%), Positives = 153/185 (82%), Gaps = 3/185 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE IPH+Y+ I GIQES++EILMNL EIVLRSNL GTR+A ICV+GP +TA+DIILP
Sbjct: 66 KFEKIPHEYTTIVGIQESIYEILMNLKEIVLRSNLDGTRDASICVRGPRDVTAQDIILPN 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK--MSNNF-EDRSYPIDAVFMPVENA 234
+ I+DNTQHI TLTEPID CI L+I+RNRGYS K M NF +DR YPIDAVF+PV+N
Sbjct: 126 SAAIVDNTQHIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVFLPVKNV 185
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENN 54
NHSIHSY NG+ E+LFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE F+ ENN
Sbjct: 186 NHSIHSYENGS--HEMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFHFENN 243
Query: 53 QHQVT 39
Q++ T
Sbjct: 244 QNEHT 248
[138][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 261 bits (667), Expect = 3e-68
Identities = 129/194 (66%), Positives = 153/194 (78%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG RNA ICV+GP YITA+DIILPP
Sbjct: 46 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPP 105
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 106 SVEIVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 165
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++
Sbjct: 166 IFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 225
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 226 FTSPLLSFQKRLTN 239
[139][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 260 bits (664), Expect = 6e-68
Identities = 128/194 (65%), Positives = 154/194 (79%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R+A ICV+GP YITA+DIILPP
Sbjct: 46 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPP 105
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP+D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 106 SVEIVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNVNYS 165
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++
Sbjct: 166 IFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 225
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 226 FTSPLLSFQKRLTN 239
[140][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 259 bits (662), Expect = 1e-67
Identities = 126/183 (68%), Positives = 154/183 (84%), Gaps = 3/183 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+FE IPH+Y+ GIQESV+EI+MNL EIVLRS+LYGTR+A ICV+GP +TA+DIILPP
Sbjct: 66 QFEKIPHEYTTRVGIQESVYEIVMNLKEIVLRSSLYGTRDASICVRGPRDVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVFMPVENA 234
+V I+DNTQHI TLTEPI+ C+ L+IERNRGYSL++ +N+ ++R YPIDAVFMPV+N
Sbjct: 126 SVSIVDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVFMPVKNV 185
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENN 54
NHSIHSY NG+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE + ENN
Sbjct: 186 NHSIHSYENGS--HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEKPHFENN 243
Query: 53 QHQ 45
Q++
Sbjct: 244 QNE 246
[141][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 259 bits (662), Expect = 1e-67
Identities = 128/187 (68%), Positives = 158/187 (84%)
Frame = -3
Query: 581 FENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPA 402
F+N H+YS IAGIQESVH+ILMNL EIVL+SNLYGT +A + ++GP Y+TA+DIILPP
Sbjct: 67 FQNASHEYSIIAGIQESVHDILMNLKEIVLKSNLYGTCDASLYIKGPRYVTAQDIILPPH 126
Query: 401 VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSI 222
VEI+D+TQHIA+LTEPI+LCI LKIERNRGY +K F++ +Y +DAVFMPV N NHSI
Sbjct: 127 VEIVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPVLNVNHSI 186
Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
+SY GNEK+EILFLEIWTNGSLTPKEALH+A++NL++LFIPFL +EEE LE+ +HQ+
Sbjct: 187 YSY--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNLEDAEHQI 244
Query: 41 TLPFFPF 21
PF PF
Sbjct: 245 --PFSPF 249
[142][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 258 bits (660), Expect = 2e-67
Identities = 127/194 (65%), Positives = 152/194 (78%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP
Sbjct: 154 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPP 213
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 214 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 273
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++
Sbjct: 274 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 333
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 334 FTSPLLSFQKRLTN 347
[143][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 258 bits (660), Expect = 2e-67
Identities = 127/194 (65%), Positives = 152/194 (78%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++
Sbjct: 186 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 246 FTSPLLSFQKRLTN 259
[144][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 258 bits (660), Expect = 2e-67
Identities = 127/194 (65%), Positives = 152/194 (78%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP
Sbjct: 175 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPP 234
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 235 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 294
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++
Sbjct: 295 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 354
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 355 FTSPLLSFQKRLTN 368
[145][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 258 bits (660), Expect = 2e-67
Identities = 127/194 (65%), Positives = 152/194 (78%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP
Sbjct: 46 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPP 105
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 106 SVEIVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 165
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++
Sbjct: 166 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 225
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 226 FTSPLLSFQKRLTN 239
[146][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 258 bits (660), Expect = 2e-67
Identities = 127/194 (65%), Positives = 152/194 (78%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP
Sbjct: 66 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 126 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++
Sbjct: 186 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 245
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 246 FTSPLLSFQKRLTN 259
[147][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 258 bits (658), Expect = 3e-67
Identities = 134/189 (70%), Positives = 155/189 (82%), Gaps = 7/189 (3%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF IPH+Y+ +AGI+ES++EILMNL EIVLRSNLYGTR+A ICV+GP +TA+DIILPP
Sbjct: 66 KFAKIPHEYTTMAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNF-EDRSY--PIDAVFMPV 243
+ I+DNTQHI TLTEPID C+ELKIER RGYS+K+ +N F D Y PIDAVFMPV
Sbjct: 126 STAIVDNTQHIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPIDAVFMPV 185
Query: 242 ENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY- 66
N NHSI+SY G+ +EILFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE FY
Sbjct: 186 RNVNHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFYL 243
Query: 65 LENNQHQVT 39
LENNQ+Q T
Sbjct: 244 LENNQNQHT 252
[148][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 257 bits (657), Expect = 4e-67
Identities = 126/194 (64%), Positives = 152/194 (78%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP
Sbjct: 175 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPP 234
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 235 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 294
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I + GNGN + EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++
Sbjct: 295 IFACGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 354
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 355 FTSPLLSFQKRLTN 368
[149][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 256 bits (654), Expect = 9e-67
Identities = 126/194 (64%), Positives = 151/194 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP
Sbjct: 46 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPP 105
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 106 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 165
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
I + GNGN K EILFLEIWTNGSLTP EAL++ASRNLI+LF+PFLH EEE + N+++
Sbjct: 166 IFACGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 225
Query: 44 VTLPFFPFHNRLVN 3
T P F RL N
Sbjct: 226 FTSPLLSFQKRLTN 239
[150][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 256 bits (654), Expect = 9e-67
Identities = 130/187 (69%), Positives = 151/187 (80%), Gaps = 5/187 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF IPH+Y+ IAGI+ES++EILMNL EIVLRSNLYGTR+A ICV+GP +TA+DIILPP
Sbjct: 66 KFAKIPHEYTTIAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFE----DRSYPIDAVFMPVEN 237
+ I+DNTQHI TLTEPID C+ LKIER RGYS+K+ + D +YPIDAVFMPV N
Sbjct: 126 STAIVDNTQHIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAVFMPVRN 185
Query: 236 ANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL-E 60
NHSIHSY G+ E+LFLEIWTNGSLTPKEAL +ASR LINL +PFLH EEE FYL E
Sbjct: 186 VNHSIHSYERGS--HEMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEENFYLVE 243
Query: 59 NNQHQVT 39
NNQ+Q T
Sbjct: 244 NNQNQDT 250
[151][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 253 bits (645), Expect = 1e-65
Identities = 122/185 (65%), Positives = 151/185 (81%), Gaps = 3/185 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF+ IPH+Y+ + GIQES++EILMNL EIVLRS+LYGTR+A ICV+GP +TA+DIILP
Sbjct: 66 KFDKIPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTAQDIILPT 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENA 234
+ I+DNTQHI T+TEPID C+ L+IERNRGY ++ ++N +DR YPID+VFMPV+N
Sbjct: 126 SATIVDNTQHIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVFMPVKNV 185
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENN 54
NHSIHSY NG +LFLEIWTNGSLTPKEAL +ASR L NLFIPFLH EE+ F+ ENN
Sbjct: 186 NHSIHSYENG--IHAMLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQNFHFENN 243
Query: 53 QHQVT 39
Q++ T
Sbjct: 244 QNEHT 248
[152][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 251 bits (641), Expect = 3e-65
Identities = 124/185 (67%), Positives = 149/185 (80%), Gaps = 3/185 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF+ IPH+Y+ + GIQES++EILMNL EIVLRS+LYGTR+A ICV+GP +T++DIILP
Sbjct: 66 KFDKIPHEYTTLVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTSQDIILPT 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENA 234
I+DNTQHI TLTEPID C+ L+IERNRGY ++ +SN +DR YPIDAVFMPV+N
Sbjct: 126 FATIVDNTQHIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVFMPVKNV 185
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENN 54
NHSIHSY NG +LFLEIWTNGSLTPKEAL ASR LINLFIPFLH EE+ + ENN
Sbjct: 186 NHSIHSYENG--IHAMLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQNCHFENN 243
Query: 53 QHQVT 39
Q++ T
Sbjct: 244 QNEHT 248
[153][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 245 bits (626), Expect = 2e-63
Identities = 120/170 (70%), Positives = 141/170 (82%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF ++PH+YS IAGI+ESV EIL+NL EIVLRSNLYG R A ICV+GP YITA+DIILPP
Sbjct: 175 KFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPP 234
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VEI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+S
Sbjct: 235 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 294
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
I + GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 295 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEE 344
[154][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 241 bits (616), Expect = 2e-62
Identities = 120/194 (61%), Positives = 151/194 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGVREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I+L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNRKG 245
Query: 44 VTLPFFPFHNRLVN 3
+P FP + L +
Sbjct: 246 SNMPPFPLSHVLTD 259
[155][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 241 bits (616), Expect = 2e-62
Identities = 119/190 (62%), Positives = 148/190 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K E + H+YS I GI+ESVH+IL+NL EIVLRS+ YGTR A IC+ GP +TA+DIILPP
Sbjct: 66 KLEKVTHEYSAIIGIEESVHDILINLKEIVLRSDPYGTREASICIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V IID TQHIA+LT+ I I L IE++RGY ++ N++D +PIDAVFMPV NAN+S
Sbjct: 126 SVRIIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVRNANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGN+ QEILFLEIWTNGSL P+EAL++ASRNLI+LFIPFL EE+ +NQ+
Sbjct: 186 IHSYGNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDGMDNQNG 245
Query: 44 VTLPFFPFHN 15
+P F F N
Sbjct: 246 SNMPSFSFSN 255
[156][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 241 bits (614), Expect = 4e-62
Identities = 121/194 (62%), Positives = 150/194 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[157][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 240 bits (612), Expect = 7e-62
Identities = 121/194 (62%), Positives = 150/194 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[158][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 240 bits (612), Expect = 7e-62
Identities = 121/194 (62%), Positives = 150/194 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[159][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 240 bits (612), Expect = 7e-62
Identities = 121/194 (62%), Positives = 150/194 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[160][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 240 bits (612), Expect = 7e-62
Identities = 121/194 (62%), Positives = 150/194 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPKNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[161][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 240 bits (612), Expect = 7e-62
Identities = 121/194 (62%), Positives = 150/194 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[162][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 239 bits (611), Expect = 9e-62
Identities = 120/194 (61%), Positives = 148/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A IC+ GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIRGASICIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL +ASR LI LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNIDGMNNRKG 245
Query: 44 VTLPFFPFHNRLVN 3
+P FP + L +
Sbjct: 246 SNMPPFPLSHVLTD 259
[163][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 238 bits (608), Expect = 2e-61
Identities = 119/194 (61%), Positives = 149/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKG 245
Query: 44 VTLPFFPFHNRLVN 3
+P FP + L +
Sbjct: 246 SNMPPFPLSHVLTD 259
[164][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 238 bits (608), Expect = 2e-61
Identities = 120/194 (61%), Positives = 149/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV + N+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[165][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 238 bits (606), Expect = 3e-61
Identities = 120/194 (61%), Positives = 149/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N +
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[166][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 238 bits (606), Expect = 3e-61
Identities = 120/194 (61%), Positives = 149/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N +
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[167][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 238 bits (606), Expect = 3e-61
Identities = 120/194 (61%), Positives = 149/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N +
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[168][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 237 bits (604), Expect = 6e-61
Identities = 119/194 (61%), Positives = 149/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHLLTD 259
[169][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 237 bits (604), Expect = 6e-61
Identities = 119/194 (61%), Positives = 149/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHLLTD 259
[170][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 237 bits (604), Expect = 6e-61
Identities = 119/194 (61%), Positives = 149/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHLLTD 259
[171][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 237 bits (604), Expect = 6e-61
Identities = 119/194 (61%), Positives = 149/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHLLTD 259
[172][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 237 bits (604), Expect = 6e-61
Identities = 119/194 (61%), Positives = 149/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHLLTD 259
[173][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 235 bits (599), Expect = 2e-60
Identities = 118/194 (60%), Positives = 148/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[174][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 235 bits (599), Expect = 2e-60
Identities = 118/194 (60%), Positives = 148/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[175][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 235 bits (599), Expect = 2e-60
Identities = 118/194 (60%), Positives = 148/194 (76%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[176][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 234 bits (596), Expect = 5e-60
Identities = 116/188 (61%), Positives = 146/188 (77%), Gaps = 1/188 (0%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K +NI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLDNIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQH 48
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+ + N +
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKG 245
Query: 47 QVTLPFFP 24
+P FP
Sbjct: 246 SSNMPPFP 253
[177][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 234 bits (596), Expect = 5e-60
Identities = 116/186 (62%), Positives = 145/186 (77%), Gaps = 1/186 (0%)
Frame = -3
Query: 578 ENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAV 399
ENI H+YS I GI+ESVH+ILMNL EIVLRS+ YG R A I + GP +TA+DIILPP+V
Sbjct: 68 ENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSV 127
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQHQV 42
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+ FIPFLH EE+ + N +
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNIDGINNRKGSS 247
Query: 41 TLPFFP 24
+P FP
Sbjct: 248 NMPPFP 253
[178][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 233 bits (595), Expect = 6e-60
Identities = 117/194 (60%), Positives = 147/194 (75%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV + N+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[179][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 233 bits (594), Expect = 8e-60
Identities = 117/194 (60%), Positives = 147/194 (75%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL EIV RS+ YG R A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+ ID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKTIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHVLTD 259
[180][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 232 bits (592), Expect = 1e-59
Identities = 117/194 (60%), Positives = 147/194 (75%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K ENI H+YS I GI+ESVH+ILMNL IVLRS+ YG A I + GP +TA+DIILPP
Sbjct: 66 KLENIKHEYSAIIGIEESVHDILMNLKXIVLRSDSYGIXEASIYIVGPRNVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKG 245
Query: 44 VTLPFFPFHNRLVN 3
+ FP + L +
Sbjct: 246 SNMLPFPLSHLLTD 259
[181][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 224 bits (572), Expect = 3e-57
Identities = 109/187 (58%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+F+ + H+YS I GIQESVH++L+NL EIVLRS+ Y T+ A I + GP +TA+DIILPP
Sbjct: 66 EFKRVTHEYSTILGIQESVHDVLINLGEIVLRSDSYETQKAFISILGPKKVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQ+IAT+T+ I L IELKIE++ GY ++ D ++P+DAVFMP+ N N+S
Sbjct: 126 SVKIIDTTQYIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPIRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQH 48
+HS+ NGNE QEILFLEIWTNGS+TPKEAL++ASR+LINLFIPFLH E++ F Y N +
Sbjct: 186 VHSFENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKEFIYGLKNTY 245
Query: 47 QVTLPFF 27
+ + +F
Sbjct: 246 ESNMSYF 252
[182][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 222 bits (566), Expect = 1e-56
Identities = 110/188 (58%), Positives = 146/188 (77%), Gaps = 2/188 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF+ + H+YS IAGIQESVH+IL+NL EIVLRSN Y T+ A I + GP +TA+DIILPP
Sbjct: 66 KFKKVTHEYSTIAGIQESVHDILINLKEIVLRSNSYETQKAFISILGPKKVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQ+IATLT+ I L IEL+IE++ GY ++ S D +PIDA+FMP+ NAN+S
Sbjct: 126 SVKIIDTTQYIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPIRNANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQ 51
+HS+ + N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++ LEN
Sbjct: 186 VHSFEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEIINGLENKY 245
Query: 50 HQVTLPFF 27
+ +F
Sbjct: 246 ESNNMSYF 253
[183][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 214 bits (546), Expect = 3e-54
Identities = 104/169 (61%), Positives = 138/169 (81%)
Frame = -3
Query: 581 FENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPA 402
F+ + H+YS I GIQESVH+IL+NL EIVL+SN T+ A I + GP ITA+DIILPP+
Sbjct: 67 FKKVTHEYSTIVGIQESVHDILINLKEIVLKSNSSETQKAFISILGPKKITAQDIILPPS 126
Query: 401 VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSI 222
V+IID TQ+IAT+T+PI L IEL+IE++ GY ++ S D +PIDA+FMP+ NAN+S+
Sbjct: 127 VKIIDTTQYIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPIRNANYSV 186
Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
HS+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 187 HSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKK 235
[184][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 211 bits (537), Expect = 3e-53
Identities = 109/188 (57%), Positives = 135/188 (71%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFEN+ H+YS I GI+ESVH+I +NL IVL+S+ YG R A I GP +TA+DIILPP
Sbjct: 66 KFENMTHEYSAIMGIEESVHDISINLRGIVLQSDPYGIREASIYSVGPRDVTAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V IID TQHIA+L E I I +I ++RGY ++ NN D + DAV MPV NAN+S
Sbjct: 126 SVRIIDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPVRNANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNE QEILF EIWTNGSL P EAL++ASRNLI+LFIPF+ EE+ +N +
Sbjct: 186 IHSYGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNIDGIDNWNG 245
Query: 44 VTLPFFPF 21
+ FPF
Sbjct: 246 YNMSLFPF 253
[185][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 209 bits (532), Expect = 1e-52
Identities = 100/168 (59%), Positives = 135/168 (80%)
Frame = -3
Query: 578 ENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAV 399
+ + H+YS I GIQES H+IL+NL EIVL+SN Y T+ A + + GP ITA+DIILPP+V
Sbjct: 68 KKVTHEYSTIVGIQESAHDILINLKEIVLKSNSYETQKAFLSILGPKKITAQDIILPPSV 127
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQ+IAT+T+PI L IEL+I+++ GY + S D + IDA+FMP+ NAN+S+H
Sbjct: 128 KIIDTTQYIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPIRNANYSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
S+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 188 SFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKK 235
[186][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 209 bits (531), Expect = 2e-52
Identities = 105/188 (55%), Positives = 139/188 (73%), Gaps = 2/188 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE + H+YS IAGIQESVH+I +N EIVL SN T+ A I + GP ITA+DIILPP
Sbjct: 66 KFEKVTHEYSTIAGIQESVHDISINSKEIVLESNSSETQKAFISILGPKKITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID Q+IATLT+ I L IEL+IE++ GY ++ SN + + IDA+FMP+ NAN+S
Sbjct: 126 SVKIIDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPIRNANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQ 51
+HS+ N N+ QE+LF+EIWTNGS+TPK+AL++ASR+LI+LFIPFLH E LEN
Sbjct: 186 VHSFENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREIINELENEY 245
Query: 50 HQVTLPFF 27
+ +F
Sbjct: 246 KLSNISYF 253
[187][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 207 bits (527), Expect = 5e-52
Identities = 98/178 (55%), Positives = 139/178 (78%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K +N+ H+YS I GI+ES+++IL+N EIVLRS+ Y T+ A I + GP ITA DI+LPP
Sbjct: 66 KSKNVIHEYSTIIGIEESINDILINFKEIVLRSDSYETQKAYISITGPKDITAEDILLPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+ ID++QHIAT+T+ I L IE++I+++RGY ++ S + + IDAVFMP+ AN+S
Sbjct: 126 SVQAIDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPIRKANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
+HS+GN + QEILF+EIWT+GSLTPKEAL++ASRNLI+LF+PFLH EEE + ++
Sbjct: 186 VHSFGNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEIISDRDE 243
[188][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 206 bits (525), Expect = 8e-52
Identities = 107/197 (54%), Positives = 135/197 (68%), Gaps = 10/197 (5%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF NI ++YS I GI+ES+HEILMNL EIVLRS+ YG R I V GP +TA+DI+LPP
Sbjct: 66 KFHNISNEYSVIIGIEESIHEILMNLKEIVLRSDAYGIREGSIHVVGPKKVTAQDIMLPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----------YPIDAV 255
+V IID TQHIA + + I L I L+IE+ RGY ++ NN+ + +PIDA
Sbjct: 126 SVRIIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVFPIDAA 185
Query: 254 FMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
F PV+N N+SIHSY + NE QEILFLEIWTNG L PKEAL++ASRNLI+ F+PFL+ +EE
Sbjct: 186 FAPVQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPFLNAKEE 245
Query: 74 TFYLENNQHQVTLPFFP 24
N+ P P
Sbjct: 246 NSDGTNSLSDDITPSLP 262
[189][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 206 bits (525), Expect = 8e-52
Identities = 97/170 (57%), Positives = 132/170 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE + H+YS I GIQESVH+IL+NL EIVL+SN Y T+ A I + GP +TA DI+LP
Sbjct: 66 KFEKVTHEYSTIMGIQESVHDILINLKEIVLKSNSYKTQEASISILGPKRVTAEDIVLPS 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VE+ID TQHIAT+T+ + I+L I ++RGY ++ +ED ++ ++A F P+ NAN+S
Sbjct: 126 SVEVIDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+HS+ N EKQEILF+E+WTNGSLTPKEAL +AS++LINLFIP LH ++E
Sbjct: 186 VHSFENEKEKQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKE 235
[190][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 205 bits (522), Expect = 2e-51
Identities = 107/195 (54%), Positives = 141/195 (72%), Gaps = 3/195 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRS--NLYGTRNALICVQGPGYITARDIIL 411
K E + H+YS I GIQESV +IL+NL EIVL+S N T+ A + + GP +TARDII
Sbjct: 67 KSEKVTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVTARDIIF 126
Query: 410 PPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENAN 231
PP+VE+ID TQ+IATLT+ I L IELKIE++ GY + S D + +DAVF P+ NAN
Sbjct: 127 PPSVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNAN 186
Query: 230 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EETFYLENN 54
+S+HS+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E EE + +N
Sbjct: 187 YSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHDKNE 246
Query: 53 QHQVTLPFFPFHNRL 9
+ + P N++
Sbjct: 247 SNTLHFSSSPSENKM 261
[191][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 203 bits (517), Expect = 7e-51
Identities = 107/189 (56%), Positives = 137/189 (72%), Gaps = 4/189 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRS--NLYGTRNALICVQGPGYITARDIIL 411
K E + H+YS I GIQESV +IL+NL EIVL+S N T+ A + + GP +TARDI+
Sbjct: 67 KSEKVTHEYSTILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVTARDIVF 126
Query: 410 PPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENAN 231
PP+VE+ID TQ+IATLT+ I L IELKIE++ GY + S D + +DAVF P+ NAN
Sbjct: 127 PPSVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNAN 186
Query: 230 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LEN 57
+S+HS+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E+E L N
Sbjct: 187 YSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHGLGN 246
Query: 56 NQHQVTLPF 30
TL F
Sbjct: 247 KNESNTLHF 255
[192][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 200 bits (509), Expect = 6e-50
Identities = 90/170 (52%), Positives = 131/170 (77%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+FE + H+YS +AGIQE++H+IL+NL EIVLRS+ G + A++ V GP +TA DI LPP
Sbjct: 66 RFEGVAHEYSTVAGIQETIHDILVNLKEIVLRSDSDGNQKAILSVTGPKRVTAGDISLPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V++ID++Q+I T+T+PI + IEL IE + GY ++ N + D +P+DAVFMPV N N+S
Sbjct: 126 SVKVIDDSQYIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+H +G+G E +EILF+E+WTNGSLTP EA+ +AS++ I+L PFLH + E
Sbjct: 186 VHPFGSGKEMREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHE 235
[193][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 190 bits (483), Expect = 6e-47
Identities = 95/187 (50%), Positives = 136/187 (72%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF+N+ H+YS + GI+ES+H+IL+NL EIVL+S+ Y T+ A I + GP +TA DI+LP
Sbjct: 66 KFKNVVHEYSTLVGIKESIHDILINLKEIVLQSDSYETQKASISILGPRDVTAGDILLPT 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID +QHIAT+T I L +EL+IER+ GY + + IDA+F P+ NAN+S
Sbjct: 126 SVKIIDASQHIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPIRNANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHS+ + N+ +EILFLE+WTNGSLTP AL +ASR+LI+LFI FL++E+E E ++
Sbjct: 186 IHSFESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIKEIENNE 245
Query: 44 VTLPFFP 24
+ + FP
Sbjct: 246 LNIKNFP 252
[194][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 188 bits (478), Expect = 2e-46
Identities = 90/162 (55%), Positives = 125/162 (77%)
Frame = -3
Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
I H+YS I GI+ES+H+IL+NL EI+LRS+ + A ICV GP +TARDI + +
Sbjct: 71 IKHEYSAINGIRESIHDILINLKEIILRSDSPEPQKAYICVSGPSEVTARDIQGSSLIHV 130
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
IDNTQ++AT+T I L IEL IE++RGY ++ S + + +PIDAVFMP+ NAN+S+HS+
Sbjct: 131 IDNTQYVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRNANYSVHSF 190
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
G+ + +EIL LEIWTNGSLTP++AL++ASRNLI+LFIP ++
Sbjct: 191 GSREKTKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMN 232
[195][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 188 bits (477), Expect = 3e-46
Identities = 88/170 (51%), Positives = 126/170 (74%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFE + H+YS I GIQE++H+I +NL E V RS+ ++ A + V GP +TA D LPP
Sbjct: 66 KFEGVIHEYSTITGIQETIHDISVNLKETVPRSDSNDSKEAFLSVTGPKRVTAGDTSLPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID++Q+I T+T+PI + IE +IE++ GY ++ N + D +P+DAV MPV N N+S
Sbjct: 126 SVKIIDDSQYIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRNVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+H +G+G E +EI F+EIWTNGS TP EAL +AS+NLI+L IPFLH++ E
Sbjct: 186 VHPFGSGREMREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHE 235
[196][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 186 bits (471), Expect = 2e-45
Identities = 94/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K + + H+YS I G+QES+H+IL+NL EIVL+S + + A I V GP ITA+DI P
Sbjct: 66 KIKKVKHEYSTIIGLQESIHDILINLKEIVLKSESFEPQKAYISVLGPKKITAQDIKGPS 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
++I+ Q+IATL + I L IEL IE++RGY ++ +++ +P+DAVFMP+ NAN+S
Sbjct: 126 CIKIMIIAQYIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNANYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYLENNQ 51
+HS+ + + +EILFLEIWT+GSLTPKEAL++ASRNLI+LFIP ++ E E+ F +E
Sbjct: 186 VHSFESEKKIKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNFGIEKT- 244
Query: 50 HQVTLPFFPFHN 15
++ + +FPF +
Sbjct: 245 NESNMSYFPFQS 256
[197][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 183 bits (465), Expect = 7e-45
Identities = 89/166 (53%), Positives = 122/166 (73%), Gaps = 2/166 (1%)
Frame = -3
Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
HDYS ++GI+ESVH+IL+NL EIVL+S LYG A IC GP +TA+DIILP +++IID
Sbjct: 73 HDYSTMSGIKESVHDILLNLKEIVLKSELYGIHKASICTVGPRNVTAQDIILPSSIKIID 132
Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
TQHIA+LT+ + + L IERN+GY++ + S ++ +PIDA MPV N N SIHSY
Sbjct: 133 GTQHIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPCMPVRNVNFSIHSY 192
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ N+ +E+L EIWTNG LTP+EA ++A LI+L +P LH+EE+
Sbjct: 193 KSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED 238
[198][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 182 bits (461), Expect = 2e-44
Identities = 90/176 (51%), Positives = 128/176 (72%)
Frame = -3
Query: 578 ENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAV 399
+NI H+YS+I GI+ESVH+ILMNL +IVLRS LYG A IC GP +TA+DIILP ++
Sbjct: 69 KNILHEYSSIIGIKESVHDILMNLKQIVLRSELYGIHEASICTVGPKNVTAQDIILPSSI 128
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID+TQHIA+LT+ I + LKIE+ + Y+++ +D +PID V +PV+N N SIH
Sbjct: 129 QIIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIH 188
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
SY + + QE+L EIWTNG LTP+E +++A +L++L IP L VE+ ++N+Q
Sbjct: 189 SYKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQN---IKNSQ 241
[199][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 178 bits (452), Expect = 2e-43
Identities = 92/189 (48%), Positives = 127/189 (67%), Gaps = 2/189 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLY-GTRNALICVQGPGYITARDIILP 408
+F + H+YS I G+QE++H++L+NL EIVLR + + A + V GP +TA D+ LP
Sbjct: 66 RFCGVVHEYSTITGLQETIHDVLVNLKEIVLRGDSKEDIQEAFLSVTGPKEVTAGDLSLP 125
Query: 407 PAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANH 228
P VE IDN+Q+IAT+T+PI L IEL+IE++ GY ++ +PIDAVFMPV N N+
Sbjct: 126 PGVEAIDNSQYIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRNVNY 185
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EETFYLENNQ 51
SIH +G+G QEILF+EIWTNGSLTP EAL +AS L++L FL+V + EN +
Sbjct: 186 SIHLFGSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGE 245
Query: 50 HQVTLPFFP 24
+ L P
Sbjct: 246 DSLDLTKSP 254
[200][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 176 bits (445), Expect = 2e-42
Identities = 86/172 (50%), Positives = 126/172 (73%), Gaps = 2/172 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KFENI H+YS + GIQESVH+IL+N EIVL+S + A I + GP +TA+DI LP
Sbjct: 69 KFENITHEYSTMDGIQESVHDILINSKEIVLKSKSSEAQKAFISIVGPRRVTAQDIELPT 128
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+VE+ID QHIAT+T+ + L IELKIE++ GY + ++D ++ +DAVF P+ + N+S
Sbjct: 129 SVEVIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSVNYS 188
Query: 224 IHSYGNGNEK--QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
IH + + ++ +E+L EIW+NGS+TP+EA+++ASR+ INLF+PFL E+E
Sbjct: 189 IHCFESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKE 240
[201][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 172 bits (437), Expect = 1e-41
Identities = 85/170 (50%), Positives = 124/170 (72%), Gaps = 1/170 (0%)
Frame = -3
Query: 581 FENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPA 402
F+N+ +Y+ + G++E+ +IL+NL E+V+RS+ + A+I GPG +TA DI+LPP+
Sbjct: 179 FKNVKSEYAAMKGVEETPMDILVNLKELVIRSDSDEPQKAIISAIGPGPVTAGDIVLPPS 238
Query: 401 VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSI 222
+E+ D TQHIA LT+ + L IEL +E+ GY + D + ID+VFMPV NAN+S+
Sbjct: 239 LEVTDPTQHIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANYSV 298
Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
HSY + QEILFLEIWTNGS+TP+EALH+A+R LI+LF+PFLH +++
Sbjct: 299 HSYESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKK 348
[202][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 163 bits (412), Expect = 1e-38
Identities = 79/163 (48%), Positives = 111/163 (68%), Gaps = 1/163 (0%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K +NI H+Y + G++ES+ +IL+NL EIV + T+ I V+GP ITA DI + P
Sbjct: 63 KIDNIKHEYCTLTGVRESIQDILLNLKEIVFKGVCDKTQKGFIFVKGPKKITASDIQIEP 122
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+EI+D+ Q IA LTEPID +EL IE++ G+ L+ + S+ IDA+FMP+ N N+S
Sbjct: 123 CIEILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIRNVNYS 182
Query: 224 IHSYGN-GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFI 99
IH G+ K E+L LEIWTNGS+TPKEA HQAS ++N+F+
Sbjct: 183 IHPVEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFL 225
[203][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 159 bits (401), Expect = 2e-37
Identities = 84/167 (50%), Positives = 117/167 (70%), Gaps = 3/167 (1%)
Frame = -3
Query: 578 ENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGT-RNALICVQGPGYITARDIILPPA 402
E I H+Y+ IAG++ESVH+ILMNL EIVL++N + + A I + GP +TA+DI+LPP+
Sbjct: 68 ERINHEYTAIAGVRESVHDILMNLKEIVLKTNPFSAAQEAHIPIVGPRKVTAQDIVLPPS 127
Query: 401 VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSI 222
V +D TQHIAT+T I I L++ER G+ + ++ S P DAVFMP+ +AN+SI
Sbjct: 128 VGTMDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFMPIRHANYSI 187
Query: 221 HSYGN--GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
H G+ G +E+L LE T+GS TP+EA+++ASRNL NLF PF H
Sbjct: 188 HRLGSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[204][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 155 bits (391), Expect = 3e-36
Identities = 76/172 (44%), Positives = 114/172 (66%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K H+YS + GIQES+H+IL+NL ++++++ + + LI + GP +TA DI L
Sbjct: 68 KIYGAAHEYSTLEGIQESIHDILLNLKQVIIKNKICEFQKCLISIIGPKKVTAADIELSQ 127
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+ I + HIAT+T+PI +EL I + RGY ++ N+ +D +P+DA+F PV N N S
Sbjct: 128 NITISNPYHHIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNFS 187
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
IH N E+QE L LEIWTNG++TP +AL Q S NLI+LF+P +E++T+
Sbjct: 188 IH---NLAEQQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDDTY 236
[205][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 152 bits (383), Expect = 2e-35
Identities = 69/168 (41%), Positives = 115/168 (68%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K +N H+YS+++G+QESVH+IL+NL +I+L S+ G + V GP + A D+ LP
Sbjct: 66 KIKNAIHEYSSLSGVQESVHDILINLKKIILSSSFSGIFEGFLSVVGPKTVLASDLNLPS 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
++I++ Q+IAT+ +PI+ +++ I++ +GYSLK + + + +D VF+P+ + N+S
Sbjct: 126 FIKIVNPDQYIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSVNYS 185
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
IHS+ + +E L +E+WTNGS+ PKEA+ +AS NL+NLF P + E
Sbjct: 186 IHSFEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQE 233
[206][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 149 bits (376), Expect = 2e-34
Identities = 77/188 (40%), Positives = 117/188 (62%)
Frame = -3
Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIID 387
H+YS + GI+ES+H+IL+NL +IV +S+ + ++ GPG +TA+ I LPP V+++D
Sbjct: 69 HEYSTLKGIRESIHDILLNLKDIVFKSDTLERQEGILLFNGPGIVTAQHIKLPPVVQVVD 128
Query: 386 NTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
NTQ+IA L P + I + +E + + + + +DA PV N N+SIHS G
Sbjct: 129 NTQYIARLEMPTSIEIHITLENTKTCTSLNTMPTTKGRFILDAALKPVRNMNYSIHSLGE 188
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFF 27
G+ +QE+L LE+WTNGSLTP+E + QAS+NL +L P L V E F + N H+ + F
Sbjct: 189 GDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKV-ERYFQAKQNIHKKRM-FT 246
Query: 26 PFHNRLVN 3
P + +N
Sbjct: 247 PTQSENLN 254
[207][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 145 bits (367), Expect = 2e-33
Identities = 73/129 (56%), Positives = 97/129 (75%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
KF+ + H+YS I GIQESVH+IL+N EIVL+SN Y T+ A I + GP ITA+DIILPP
Sbjct: 66 KFKKVTHEYSTILGIQESVHDILINSKEIVLKSNSYETQKAFISILGPKKITAQDIILPP 125
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 225
+V+IID TQ+IATLT+ I L IE +IE++ GY ++ S D + +DAVFMP+ NAN+S
Sbjct: 126 SVKIIDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSKKSTDGLFFVDAVFMPIRNANYS 185
Query: 224 IHSYGNGNE 198
IHS+ N N+
Sbjct: 186 IHSFENKNK 194
[208][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 143 bits (361), Expect = 9e-33
Identities = 76/163 (46%), Positives = 106/163 (65%), Gaps = 5/163 (3%)
Frame = -3
Query: 557 SNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQ 378
S I GI+ESVH+I+MNL EIV R L+G A I GP +TA+DIILPP ++I+D TQ
Sbjct: 79 STILGIEESVHDIIMNLREIVFRCELHGIHKAYIYTVGPKNVTAQDIILPPFIQIVDGTQ 138
Query: 377 HIATLTEPIDLCIELKIERNRG---YSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
HIA++T+PI L + LKIE+N G S+ + R P + +MPV + ++++ Y +
Sbjct: 139 HIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPTEIFYMPVRSVTYNVYFYKD 198
Query: 206 GNEKQ--EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
+ +IL E+WTNG LTPKEAL++A LI+L IP L V
Sbjct: 199 EYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLLDV 241
[209][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 139 bits (349), Expect = 2e-31
Identities = 68/164 (41%), Positives = 111/164 (67%)
Frame = -3
Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
I H+Y + GIQE+V +IL+N+ ++ + SN + + A I V GP + A DI+ PP++ +
Sbjct: 171 IVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVV 230
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
D +Q+IA +T I +E+++E++ GY + + + ID+VFMPV AN+S+HS+
Sbjct: 231 PDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSF 290
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+ +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 291 EVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334
[210][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 139 bits (349), Expect = 2e-31
Identities = 68/164 (41%), Positives = 111/164 (67%)
Frame = -3
Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
I H+Y + GIQE+V +IL+N+ ++ + SN + + A I V GP + A DI+ PP++ +
Sbjct: 258 IVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVV 317
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
D +Q+IA +T I +E+++E++ GY + + + ID+VFMPV AN+S+HS+
Sbjct: 318 PDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSF 377
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+ +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 378 EVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421
[211][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 132 bits (331), Expect = 3e-29
Identities = 74/175 (42%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H++S + G++E V EIL+N+ E+VLRSN T+ + QGPG +TA + LP
Sbjct: 75 RIAGVTHEFSTVPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQGPGEVTAEKLQLPS 134
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGY---SLKMSNNFEDRSYPIDAVFMPVENA 234
VE+I+ HIATL E L +E I R RGY S + ID+VFMPV
Sbjct: 135 EVEVINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDFLQIDSVFMPVRKV 194
Query: 233 NHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
N+++ + G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P V +T
Sbjct: 195 NYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSPLQEVSFDT 249
[212][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 130 bits (326), Expect = 1e-28
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Frame = -3
Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
+ H++S I G++E+V +IL+NL EIVL++ T+ + VQGP + ARD+ LP ++E+
Sbjct: 66 VNHEFSTIHGVREAVLDILLNLKEIVLKTQSQETQRGHLSVQGPSTVLARDLQLPSSIEL 125
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENANHSI 222
+D Q+IAT++ + L +E +E +GY L + F+ PIDAVFMPV N+++
Sbjct: 126 VDPDQYIATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFMPVTKVNYTV 185
Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
G+ QE + +E+WTNGS+ ++A+ + +INLF P +V
Sbjct: 186 EENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSPLQNV 231
[213][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 126 bits (317), Expect = 1e-27
Identities = 75/186 (40%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H++S I GI+E V EIL+NL EIV L + + VQGP +TAR LPP
Sbjct: 57 RIAGVSHEFSTINGIREDVLEILLNLKEIVFSGQLQESTIGRLTVQGPAIVTARSFELPP 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFED--RSYPIDAVFMPVENAN 231
+++ID Q+IAT+ L +E KIE GY + +N + +D+VFMPV+ N
Sbjct: 117 EIKLIDPEQYIATICGNNTLEMEFKIEVGSGYKIVEKDNSTEHFEFLQVDSVFMPVKKVN 176
Query: 230 HSI-HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV--EEETFYLE 60
I + G N E L L+IWTNGS++ KEA+ A+ NLINLF P + E ET Y
Sbjct: 177 FRIEETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDGESETDYET 236
Query: 59 NNQHQV 42
N +
Sbjct: 237 NETSHI 242
[214][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 125 bits (313), Expect = 3e-27
Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 4/97 (4%)
Frame = -3
Query: 401 VEIIDNTQH----IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENA 234
+++I N + IA L +PIDLCI L+I+RN YS+K NNF+D SYPID VFM V+NA
Sbjct: 52 LDLISNNNYSTILIARLKKPIDLCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNA 111
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQAS 123
NH+IH YGN NE+QEILFL++WTN +LTPKEA H+AS
Sbjct: 112 NHNIHFYGNVNERQEILFLKLWTNKNLTPKEAFHEAS 148
[215][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 124 bits (310), Expect = 7e-27
Identities = 73/175 (41%), Positives = 104/175 (59%), Gaps = 8/175 (4%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H++S + G++E V EIL+N+ E+VLRS+ T+ + QGPG +TA + LP
Sbjct: 77 RIAGVTHEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPS 136
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSYPIDAVFMP 246
VE+I+ HIATL E L +E I R GY S M+ +F ID+VFMP
Sbjct: 137 DVEVINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDF----LQIDSVFMP 192
Query: 245 VENANHSIHSYGNGN-EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
V N+++ + G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P V
Sbjct: 193 VRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAPLQEV 247
[216][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 122 bits (307), Expect = 2e-26
Identities = 74/174 (42%), Positives = 99/174 (56%), Gaps = 12/174 (6%)
Frame = -3
Query: 566 HDYSNIAGIQESVHEILMNLNEIVLRSNL--------YGTRNALICVQGPGYITARDIIL 411
H+YS + G++ESV EIL+NL +IV++ + A I QGPG +TA I
Sbjct: 72 HEYSTLDGVRESVDEILLNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGVVTAEHIKF 131
Query: 410 PPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENAN 231
P ++ +D Q IATL LCIEL I + L + + + IDA F PV+ AN
Sbjct: 132 PSSILAVDPDQSIATLLNETQLCIELFIRQGIAKQLTRTKK-NHQGFFIDANFTPVQKAN 190
Query: 230 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF----IPFLHVE 81
SIHS G+ Q++L LEIWTN +LTP EAL+QA +L+NLF P LH E
Sbjct: 191 FSIHSVGDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[217][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 122 bits (306), Expect = 2e-26
Identities = 69/175 (39%), Positives = 105/175 (60%), Gaps = 4/175 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ I G++E V EIL+NL EIVL S + + VQGP +TA LP
Sbjct: 57 RIAGVNHEFATIPGVREDVLEILLNLKEIVLNSYSNQRQIGRLLVQGPATVTAGHFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VE++D Q+IATL+ L +E ++E+ GY N E + IDAVFMPV
Sbjct: 117 EVEVVDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPVRKV 176
Query: 233 NHSIH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
N+++ + G+ +++ L L+IWTNGSLTP+EAL QA+ L++LF+P + E+
Sbjct: 177 NYTVEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLKDITLES 231
[218][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 120 bits (301), Expect = 8e-26
Identities = 68/174 (39%), Positives = 104/174 (59%), Gaps = 4/174 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H++ +I G++E V E+L+NL IVL+S + + +QG +T + LP
Sbjct: 57 RIAGVNHEFCSIPGVKEDVLELLLNLKNIVLKSYTNEPQIGRLKIQGACKVTTANFELPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENA 234
VEII TQ++AT+ E L +E KIE+ RGY + K + N D PIDA+FMPV
Sbjct: 117 EVEIIHGTQYVATVAENAILEMEFKIEKGRGYKIIDKKQTENSID-FLPIDAIFMPVRKV 175
Query: 233 NHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+ + + +E +E L LEIW NGS+TP++++ QA+ L+NLF PF + E
Sbjct: 176 NYMVEEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPFKKINFE 229
[219][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 120 bits (301), Expect = 8e-26
Identities = 63/167 (37%), Positives = 102/167 (61%), Gaps = 4/167 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ I H++S + G++E V EIL+NL IVL+ N+ + + VQGP +T+ I P
Sbjct: 61 RIAGINHEFSTVKGVKEDVLEILLNLKNIVLKGNVLKNQIGRLKVQGPAIVTSGQIEFPL 120
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVEN 237
+ ++D Q+IAT++ L +ELK+E++ GY K+ F +S PID++FMPV+
Sbjct: 121 DITVVDPCQYIATISGNDYLEMELKVEKSSGY--KLVETFSKKSPLDFLPIDSIFMPVKK 178
Query: 236 ANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
N+ + + E L LE+WTNGSL+P+++++ AS NL+ LF P
Sbjct: 179 VNYYVEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[220][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 120 bits (300), Expect = 1e-25
Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 4/163 (2%)
Frame = -3
Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
+ H+++ I G++E EI++N+ EI+L+S + + + GPG +TA LP VE+
Sbjct: 61 VNHEFATIPGVREDALEIILNMKEIILKSYTHQPQIGRLTATGPGQVTAAQFDLPSEVEV 120
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
+D TQ+IATL + L +E +IE+ + Y N E + IDAVFMPV N+S+
Sbjct: 121 VDPTQYIATLADGAKLEMEFRIEKGKSYRAVQRNRDEATALDFLQIDAVFMPVTKVNYSV 180
Query: 221 HS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
S + G+ ++ L LEIWTNGS+ P+EAL QA+ + LF P
Sbjct: 181 DSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNP 223
[221][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 119 bits (298), Expect = 2e-25
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 4/172 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ IAGI+E V EIL+N+ E+VL+S G + + GP + + LP
Sbjct: 57 RIAGVNHEFATIAGIREDVLEILLNMKEVVLKSYTPGPHIGRVMITGPSTVRSAQFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VE +D Q+IATL + L +E +IER +GY E S +DAVFMPV
Sbjct: 117 DVEFVDPGQYIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVFMPVTKV 176
Query: 233 NHSIH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
N+S+ + +G+ +++ L L++WTNGS++P+EAL QA+ L++LF P +E
Sbjct: 177 NYSVEDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[222][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 119 bits (297), Expect = 2e-25
Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 4/167 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ + G++E V E+++N+ EI+L+S T+ + GP + A LP
Sbjct: 57 RIAGVNHEFATVQGVREDVMELMLNMKEIILKSYTNQTQIGRLVATGPATVVAAQFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VEI+D Q++ATL E L +E ++E+ +GY + E S ID++FMPV
Sbjct: 117 EVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPVTKV 176
Query: 233 NHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
N+S+ + ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 177 NYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[223][TOP]
>UniRef100_A0T0K0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaeodactylum
tricornutum RepID=RPOA_PHATR
Length = 311
Score = 119 bits (297), Expect = 2e-25
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ I H++S I G++E + EIL+NL I+ S + T+ + VQGP +TA I LPP
Sbjct: 57 RIAGITHEFSTIPGVREDILEILLNLKGIICTSQIQDTQFGHLKVQGPSVVTADLIQLPP 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSY-PIDAVFMPVENA 234
VEII+ +IAT++ L IE K E GY L S NF ED +Y +D +FMPV+
Sbjct: 117 GVEIINPNHYIATISTSNILEIEFKFEYGSGYHL-ASQNFVEEDENYLQLDTIFMPVQKV 175
Query: 233 NHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
+ I + Y N E LFL+IWTNGS++P +AL A++ +I+LF
Sbjct: 176 DFKIENIYDATNNISERLFLDIWTNGSISPNDALESAAQVIIDLF 220
[224][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 118 bits (296), Expect = 3e-25
Identities = 67/192 (34%), Positives = 112/192 (58%), Gaps = 9/192 (4%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ I G++E V +IL+N+ ++VLRS+ + + VQGP +T D LP
Sbjct: 57 RIAGVNHEFATIPGVREDVLDILLNMKQVVLRSHTNDPQIGRLFVQGPATVTTDDFELPT 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VEI++ TQ++ATL+ L +E +IE+ +GY N E + IDA++MPV
Sbjct: 117 EVEIVNPTQYVATLSSDATLEMEFRIEQGKGYHAVGKNRDEAAALDFLEIDAIYMPVRRV 176
Query: 233 NHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIP-----FLHVEEET 72
N+ + G +++ L L+IWTNG+LTP+E+L QA+ L++LF P F VE+
Sbjct: 177 NYEVEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDATFNVVEDIE 236
Query: 71 FYLENNQHQVTL 36
E+ +Q+ +
Sbjct: 237 LEEEDETNQIPI 248
[225][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 118 bits (296), Expect = 3e-25
Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ I G++E V EI++N+ E+VL+S + + GPG +TA +P
Sbjct: 57 RIAGVNHEFATILGVREDVLEIMLNMKELVLKSYTDQPQIGRLTAIGPGTVTAAQFEVPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VE+ID Q+IATL E L +E ++ER GY + E+ S ID+VFMPV
Sbjct: 117 EVEVIDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKV 176
Query: 233 NHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
N+++ +G ++ L L+IWTNGS+ P+EAL +AS + NLFIP + E
Sbjct: 177 NYTVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229
[226][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 117 bits (294), Expect = 5e-25
Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 4/167 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ + G++E V E+++N+ EI L+S T+ + GP + A LP
Sbjct: 57 RIAGVNHEFATVEGVREDVMELMLNMKEITLKSYTNQTQIGRLVATGPATVVAAQFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VEI+D Q++ATL E L +E ++E+ +GY + E S ID++FMPV
Sbjct: 117 EVEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPVTKV 176
Query: 233 NHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
N+S+ + ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 177 NYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[227][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 117 bits (293), Expect = 7e-25
Identities = 72/187 (38%), Positives = 106/187 (56%), Gaps = 4/187 (2%)
Frame = -3
Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
+ H+++ I G++E V EI++N+ EIVL+S + + G ++TA LP VE+
Sbjct: 61 VNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFDLPSEVEV 120
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
I+ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+S+
Sbjct: 121 INPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYSV 180
Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
S G E ++ L LEIWTNGS PKEAL +A+ L++LF P + NQ +
Sbjct: 181 ESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL---------NQLE 231
Query: 44 VTLPFFP 24
+P +P
Sbjct: 232 TAVPEYP 238
[228][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 117 bits (293), Expect = 7e-25
Identities = 73/185 (39%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + ++S I GI+E + EIL+NL IVL+S + + ++GP +TA I LP
Sbjct: 57 RIAGVRDEFSTIPGIREDILEILLNLKGIVLKSKTNDLKFGRLKIKGPAVVTANCIQLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL------KMSNNFEDRSYPIDAVFMPV 243
VEI++ +IAT+T L IE KIE GY L K S ++ IDA+FMPV
Sbjct: 117 EVEIVNPNHYIATITTSNVLEIEFKIESGTGYKLAGQTFCKKSQDY----LQIDAIFMPV 172
Query: 242 ENANHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH--VEEET 72
+ + I + Y N N+ E LFL+IWTNGS++P+EA+ ASR +I+ F L + +ET
Sbjct: 173 QKVDFKIENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLLENKLPQET 232
Query: 71 FYLEN 57
EN
Sbjct: 233 KESEN 237
[229][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 117 bits (293), Expect = 7e-25
Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K +++S + GI+ESV EIL+NL EIV R+ + + +QGP + A ++ LP
Sbjct: 62 KIPGANNEFSILPGIRESVLEILLNLKEIVFRTKSLDVQKGYLSIQGPCVVKAANLQLPT 121
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENA 234
++E++D Q+IATL+ +L +E I +GY + + N S P+DA+FMP+
Sbjct: 122 SIEVVDGGQYIATLSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDAIFMPIHKV 181
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+ + E + LEIWTNGS++P++AL + +I+LF P H E
Sbjct: 182 NYMVEQDHTSKFLTERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSSE 234
[230][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 117 bits (292), Expect = 9e-25
Identities = 72/187 (38%), Positives = 106/187 (56%), Gaps = 4/187 (2%)
Frame = -3
Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
+ H+++ I G++E V EI++N+ EIVL+S + + G ++TA LP VE+
Sbjct: 61 VNHEFATIPGVREDVLEIMLNMKEIVLKSYTDQPQIGRLVATGAAHVTAGQFDLPSEVEV 120
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSI 222
I+ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+S+
Sbjct: 121 INPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYSV 180
Query: 221 HSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
S G E ++ L LEIWTNGS PKEAL +A+ L++LF P + NQ +
Sbjct: 181 ESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL---------NQLE 231
Query: 44 VTLPFFP 24
+P +P
Sbjct: 232 TAVPEYP 238
[231][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 117 bits (292), Expect = 9e-25
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ + G++E V EILM + E++LRS + + V GP +T LP
Sbjct: 57 RIAGVSHEFATVPGVREDVLEILMKMKEVILRSYSSQPQIGRLLVNGPATVTVAHFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VE+ID TQ++ATL E L +E +IE+ +GY E S ID+VFMPV
Sbjct: 117 EVEVIDQTQYVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSVFMPVRKV 176
Query: 233 NHSI-HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+ + G + ++ L LE+WTNGS++P+EAL A+ L+ LF P + E
Sbjct: 177 NYSVEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNPLKDISLE 230
[232][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 117 bits (292), Expect = 9e-25
Identities = 69/184 (37%), Positives = 108/184 (58%), Gaps = 5/184 (2%)
Frame = -3
Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
I H+++ I G++E + EIL+NL IV++S+ + + VQGP +TA I LP ++I
Sbjct: 61 IRHEFATIPGVREDILEILLNLKGIVIKSDTTEIKFGRLKVQGPLVLTADSIDLPSGIKI 120
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFMPVENANHSIH 219
++ +IAT++ I+L +E KIE GY L ++ N+ ID++FMPV+ N I
Sbjct: 121 VNPNHYIATISTSINLELEFKIEHGIGYKLASQLFNDENKNFLQIDSIFMPVQKVNFKIE 180
Query: 218 S-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYLENNQH 48
+ Y N E L LEIWTNGS+ P EAL +A + +IN F L + +ET +N
Sbjct: 181 NLYDADNSISERLILEIWTNGSIEPIEALKKACKIIINCFNSLLKTQNTKETTKKTSNNR 240
Query: 47 QVTL 36
++T+
Sbjct: 241 KLTI 244
[233][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 116 bits (291), Expect = 1e-24
Identities = 63/174 (36%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ + G++E V EI+M + E++L+S + + V GP ITA LP
Sbjct: 57 RIAGVSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VE+ID TQ++AT+ E L +E +IER +GY E S ID++FMPV
Sbjct: 117 EVEVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKV 176
Query: 233 NHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 177 NYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[234][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 116 bits (291), Expect = 1e-24
Identities = 63/174 (36%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ + G++E V EI+M + E++L+S + + V GP ITA LP
Sbjct: 57 RIAGVSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VE+ID TQ++AT+ E L +E +IER +GY E S ID++FMPV
Sbjct: 117 EVEVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKV 176
Query: 233 NHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 177 NYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[235][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 116 bits (290), Expect = 1e-24
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ + G++E V EILM + E++L++ + + V GP ITA LP
Sbjct: 57 RIAGVSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVSGPTTITAAHFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VE+ID TQ++AT+ E L +E +IE+ +GY E S ID++FMPV
Sbjct: 117 EVEVIDPTQYVATIAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSIFMPVRKV 176
Query: 233 NHSI-HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+ S G G ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 177 NYSVEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[236][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 116 bits (290), Expect = 1e-24
Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + + H+++ + G++E V EILM + E++L++ + + V GP +TA LP
Sbjct: 57 RIDGVSHEFATVPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVNGPVTVTAAHFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VE+ID TQ++AT+ + L +E +IER +GY E S ID+VFMPV
Sbjct: 117 EVEVIDPTQYVATIADGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSVFMPVRKV 176
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+S+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 177 NYSVEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 229
[237][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 115 bits (289), Expect = 2e-24
Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 5/164 (3%)
Frame = -3
Query: 572 IPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEI 393
+ H+++ I G++E V EI++N+ EIVL+S + + G ++TA LP VE+
Sbjct: 61 VNHEFATIPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFELPSEVEV 120
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENANHS 225
++ TQ IATLTE L +E +IE+ GY + + + E+ + IDAVFMPV N+S
Sbjct: 121 VNPTQPIATLTEGAKLEMEFRIEKGVGY-VPVERSSEEPAALDFLQIDAVFMPVTKVNYS 179
Query: 224 IHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P
Sbjct: 180 VESIRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[238][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 115 bits (287), Expect = 3e-24
Identities = 65/167 (38%), Positives = 95/167 (56%), Gaps = 4/167 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ I G++E V EI++N+ EIVL+S + + G +TA + LP
Sbjct: 59 RIAGVNHEFATIPGVREDVLEIMLNMKEIVLKSYSDQAQIGRLVATSAGTVTAANFELPS 118
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VE++D TQ++ATLTE L +E +IE GY + S IDAVFMPV
Sbjct: 119 EVEVVDPTQYVATLTEGSKLEMEFRIETGTGYKGVERGKDDGTSLDFLEIDAVFMPVTKV 178
Query: 233 NHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
N+ + G E Q+ L LEIWTNGS PKEAL +A+ +++LF P
Sbjct: 179 NYIVEDIRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[239][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 115 bits (287), Expect = 3e-24
Identities = 61/173 (35%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ I+G++E V E+++N+ EI L+S + + GP +TA LP
Sbjct: 57 RIAGVNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAGQFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VEI+D +Q++ATL E L +E +IE+ +GY + S ID+VFMPV
Sbjct: 117 EVEIVDPSQYVATLAEGSKLEMEFRIEKGKGYRAIERGKDDSTSLDFLQIDSVFMPVTKV 176
Query: 233 NHSIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
N+S+ +G ++ L +EIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 177 NYSVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[240][TOP]
>UniRef100_Q6J221 RNA polymerase alpha subunit (Fragment) n=1 Tax=Phaeodactylum sp.
Bohlin BA153065 RepID=Q6J221_9STRA
Length = 298
Score = 114 bits (286), Expect = 4e-24
Identities = 69/165 (41%), Positives = 98/165 (59%), Gaps = 4/165 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ I H++S I G++E + EIL+NL I+ S + T+ + VQGP +TA I LPP
Sbjct: 57 RIAGITHEFSTIPGVREDILEILLNLKGIICTSQIQDTQFGHLKVQGPSVVTADLIQLPP 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSY-PIDAVFMPVENA 234
VEII+ +IAT+T L IE K GY L S F ED +Y +D +FMPV+
Sbjct: 117 EVEIINPNHYIATITTSNILEIEFKFVYGGGYHL-ASQKFCREDENYLQLDTIFMPVQKV 175
Query: 233 NHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
+ I + Y N E LFL+IWTNGS++P +AL A++ +I+LF
Sbjct: 176 DFKIENIYDATNNISERLFLDIWTNGSISPNDALESAAQVIIDLF 220
[241][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 114 bits (285), Expect = 6e-24
Identities = 63/167 (37%), Positives = 101/167 (60%), Gaps = 6/167 (3%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ I G++E V EI++NL E VL+S+ Y + + VQGP +T LP
Sbjct: 57 RIAGVNHEFATIEGVREDVLEIMLNLKEAVLKSHTYQKQIGRLLVQGPATVTVGHFDLPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS-----YPIDAVFMPVE 240
VE+++ Q+IATL+ L +E +IE+ GY + + D S IDA+FMPV
Sbjct: 117 EVEVVNKNQYIATLSPGATLEMECQIEKGTGY--RAVDRHRDDSAALDFLQIDAIFMPVR 174
Query: 239 NANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
N+++ +G +++ L LEIWT+GSLTP+EA+ QA+ L++LF
Sbjct: 175 KVNYTVEDARDGGSLEKDRLTLEIWTSGSLTPQEAISQAAAILVDLF 221
[242][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 114 bits (285), Expect = 6e-24
Identities = 68/163 (41%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Frame = -3
Query: 578 ENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAV 399
E I H+Y IAG++ESVHE MNL EI L ++ + A I + GPG + ARD + P ++
Sbjct: 67 ERINHEYPAIAGVRESVHETSMNLKEIALTAHPSAAQEAHIPIVGPGKVAARDTVPPSSI 126
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
II QH AT+T I ++E GY + ++ S P DAV MP+ NAN+SIH
Sbjct: 127 GIIYPAQHAATVTRKIRSSTGSRVEGGCGYRRRNMVEYQKGSPPPDAVSMPIRNANYSIH 186
Query: 218 --SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+G +E+ E T+GS TP EA ++ASR+ NLF P
Sbjct: 187 RLESHSGGIMKEMPPPEARTDGSPTPGEATYEASRDSANLFSP 229
[243][TOP]
>UniRef100_A6MW22 DNA-directed RNA polymerase subunit alpha n=1 Tax=Rhodomonas salina
RepID=RPOA_RHDSA
Length = 314
Score = 114 bits (285), Expect = 6e-24
Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 9/192 (4%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H++S I GI+E V EIL+NL E+VL+S + VQGP +T ++ LP
Sbjct: 57 RIAGVSHEFSTIPGIREDVLEILLNLKEVVLKSQTKNPSVGRLRVQGPAIVTTSNLELPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
VE+ID Q+IAT+ L +E +IE +GY L + + ++ S +DA+FMPV+
Sbjct: 117 EVELIDPNQYIATICGNNILEMEFRIETGKGYHL-IERSIDETSIDFLQVDAIFMPVKKV 175
Query: 233 NHSIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV-----EEET 72
N+ N N QE L LE+WTNGS+ P++A+ Q + L L P + EE+T
Sbjct: 176 NYLTKDIRSNDNLLQEQLLLEVWTNGSIDPQDAVSQGGKILTELLHPLKEINFKSDEEDT 235
Query: 71 FYLENNQHQVTL 36
++ +Q+ +
Sbjct: 236 VAEDSKINQILI 247
[244][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 114 bits (285), Expect = 6e-24
Identities = 66/175 (37%), Positives = 104/175 (59%), Gaps = 5/175 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ + GI+E V +IL+N+ E+VLRS + + VQGP +TA D+ LP
Sbjct: 57 RITGVNHEFATMKGIREDVLDILLNMKELVLRSYTSDIQIGRLAVQGPKRVTAADLELPT 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVEN 237
V+++ +IATL E L +E +IER +GY + ED + IDA+FMPV
Sbjct: 117 EVQVVHPRHYIATLAEDGQLEMEFQIERGKGYR-AIERGSEDGAAIDYLSIDAIFMPVRK 175
Query: 236 ANHSIHSYGN-GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N ++ S + N +Q+ L LEIWT+GSL+P+EAL QA++ L++ P + E
Sbjct: 176 VNWTVESERSAANVEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRPLQEITFE 230
[245][TOP]
>UniRef100_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Thalassiosira
pseudonana RepID=RPOA_THAPS
Length = 313
Score = 113 bits (282), Expect = 1e-23
Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 4/165 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + ++S I G++E + EIL+NL IVL+S + + +QGP ITA I LPP
Sbjct: 59 RIAGVKDEFSLIPGVREDILEILLNLKGIVLKSKTPNRQFGRLRLQGPAVITASSIQLPP 118
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENA 234
+EII+ +IAT++ L IE KIE Y L S+ FED DA+FMPV+
Sbjct: 119 EIEIINPNHYIATISSSHILEIEFKIESGSKYRLANELFSDKFED-FIETDAIFMPVQKV 177
Query: 233 NHSIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
+ + + Y N N +E L ++IWTNGS++P++A+ S +INLF
Sbjct: 178 DFKVENVYDNSNNIKERLLIDIWTNGSISPEQAIFSGSNLIINLF 222
[246][TOP]
>UniRef100_Q01569 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pyrenomonas
salina RepID=RPOA_PYRSA
Length = 314
Score = 112 bits (281), Expect = 2e-23
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H++S I GI+E V EIL+NL E+VL+S + + + VQGP +T + LP
Sbjct: 57 RIAGVSHEFSTIPGIREDVLEILLNLKEVVLKSQIGTSGVGRLRVQGPAIVTTNHLELPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDR--SYPIDAVFMPVENAN 231
+E+ID Q+IAT+ L +E +IE +GY+L ++ E +DA+FMPV+ N
Sbjct: 117 EIELIDPNQYIATICGNNILEMEFRIETGKGYNLVERDSDESSIDFLQVDAIFMPVKKVN 176
Query: 230 H-SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
+ S N QE L LE+WTNGS+ P++A+ QA + L L P +
Sbjct: 177 YLSKDIRSENNLIQEQLTLEVWTNGSIDPQDAVSQAGKILTELLFPLKEI 226
[247][TOP]
>UniRef100_Q6B8X4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gracilaria
tenuistipitata var. liui RepID=RPOA_GRATL
Length = 314
Score = 112 bits (281), Expect = 2e-23
Identities = 69/190 (36%), Positives = 110/190 (57%), Gaps = 10/190 (5%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ I H++S I G++E V EIL+NL ++VL+S+ + I +QGP IT +PP
Sbjct: 57 RIAGINHEFSTITGVREDVLEILLNLKKVVLKSHSDTPQIGRIRLQGPAIITTGLFEVPP 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
+ IID Q+IAT+ +E +IE+ GY L ++ F+ +S IDAVFMPV
Sbjct: 117 EILIIDPQQYIATICNNTIFEMEFRIEKGSGYKL-VNKGFDKKSIDFLQIDAVFMPVTKF 175
Query: 233 NHSIHSYGNGNEK-------QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+++ EK QE LFLE+WTNGSL+P+EA+ + ++ L +LF P ++ +
Sbjct: 176 NYTV------EEKKISPILIQEKLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLTNLNFQ 229
Query: 74 TFYLENNQHQ 45
+N+++
Sbjct: 230 NANNTDNEYE 239
[248][TOP]
>UniRef100_A8ZV82 DNA-directed RNA polymerase subunit alpha n=1 Tax=Desulfococcus
oleovorans Hxd3 RepID=RPOA_DESOH
Length = 339
Score = 112 bits (281), Expect = 2e-23
Identities = 65/175 (37%), Positives = 105/175 (60%), Gaps = 11/175 (6%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K +N+ H+YS + G+ E V EI++NL E+ L+++ + I GPG +TA DI P
Sbjct: 65 KIDNVMHEYSTVEGVLEDVSEIILNLKEVRLKTSTAAAKTIRIDAAGPGVVTAGDIASPD 124
Query: 404 A-VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFED---RSYPIDAVFMPVEN 237
VEI++ HIATL+E L +E+ ++ RGY+L +N E+ + PIDA+F P+
Sbjct: 125 GRVEILNPESHIATLSEGATLKMEMTVKVGRGYALAEANKDEETPVNTIPIDAMFSPIRR 184
Query: 236 ANHSIHSYGNGNEKQEI----LFLEIWTNGSLTPKEALHQASRNL---INLFIPF 93
N+ + GN KQ+ L LE+WT+GS+ P++A+ A++ + +N+FI F
Sbjct: 185 VNYVV---GNSRVKQKTDFDKLTLEVWTDGSVLPEDAVAFAAKIMKEQMNVFINF 236
[249][TOP]
>UniRef100_B9DYD7 DNA-directed RNA polymerase subunit alpha n=2 Tax=Clostridium
kluyveri RepID=RPOA_CLOK1
Length = 315
Score = 112 bits (281), Expect = 2e-23
Identities = 60/179 (33%), Positives = 102/179 (56%), Gaps = 4/179 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
K + + H++S + G++E V E+++N+ E+ L+ N GT+ I QGPG + A DI
Sbjct: 57 KIDGVLHEFSTVRGVKEDVSELILNIKELALKMNGDGTKTIYIDAQGPGEVVAGDIKTDG 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDR---SYPIDAVFMPVENA 234
VEII+ HIATL E L +E+ + RGY + N FED + P+D+++ P++
Sbjct: 117 DVEIINGELHIATLDENSRLYMEITVNGGRGYVSQRRNKFEDMPIGTIPVDSIYTPIKRV 176
Query: 233 NHSIHSYGNGN-EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLE 60
N ++ + G + L LE+WTNG++ P EA+ +++ LI F F+ + + +E
Sbjct: 177 NFNVENTRVGQITDYDKLSLEVWTNGTILPDEAVSLSAKILIEHFKLFMTLTDHANNVE 235
[250][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 112 bits (280), Expect = 2e-23
Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Frame = -3
Query: 584 KFENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPP 405
+ + H+++ I+G++E V E+++N+ EI L+S + + GP +TA +P
Sbjct: 57 RIAGVNHEFATISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAAQFDVPS 116
Query: 404 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENA 234
+E++D +Q++ATL++ L +E ++E+ +GY + S ID+VFMPV
Sbjct: 117 EIEVVDPSQYVATLSDGSKLEMEFRVEKGKGYRAIERGKDDTTSLDFLQIDSVFMPVTKV 176
Query: 233 NHSIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
N+S+ +G ++ L LEIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 177 NYSVEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNE 229