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[1][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 275 bits (702), Expect = 1e-72
Identities = 132/132 (100%), Positives = 132/132 (100%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH
Sbjct: 128 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 247
Query: 38 LPFFPFHNRLVN 3
LPFFPFHNRLVN
Sbjct: 248 LPFFPFHNRLVN 259
[2][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 272 bits (696), Expect = 7e-72
Identities = 130/132 (98%), Positives = 132/132 (100%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIH
Sbjct: 128 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVT 247
Query: 38 LPFFPFHNRLVN 3
LPFFPFHNRLVN
Sbjct: 248 LPFFPFHNRLVN 259
[3][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 270 bits (690), Expect = 4e-71
Identities = 129/132 (97%), Positives = 131/132 (99%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIH
Sbjct: 128 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVT 247
Query: 38 LPFFPFHNRLVN 3
LP FPFHNRLVN
Sbjct: 248 LPLFPFHNRLVN 259
[4][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 270 bits (689), Expect = 5e-71
Identities = 129/132 (97%), Positives = 131/132 (99%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIH
Sbjct: 128 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEET YLENNQHQVT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYLENNQHQVT 247
Query: 38 LPFFPFHNRLVN 3
LPFFPFHNRLVN
Sbjct: 248 LPFFPFHNRLVN 259
[5][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 267 bits (683), Expect = 2e-70
Identities = 128/132 (96%), Positives = 130/132 (98%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIH
Sbjct: 128 EIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVT 247
Query: 38 LPFFPFHNRLVN 3
LP FPFHNRLVN
Sbjct: 248 LPLFPFHNRLVN 259
[6][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 267 bits (683), Expect = 2e-70
Identities = 128/132 (96%), Positives = 130/132 (98%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIH
Sbjct: 128 EIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVT 247
Query: 38 LPFFPFHNRLVN 3
LP FPFHNRLVN
Sbjct: 248 LPLFPFHNRLVN 259
[7][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 265 bits (677), Expect = 1e-69
Identities = 127/132 (96%), Positives = 129/132 (97%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIATL EPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIH
Sbjct: 128 EIIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVT 247
Query: 38 LPFFPFHNRLVN 3
LP FPFHNRLVN
Sbjct: 248 LPLFPFHNRLVN 259
[8][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 262 bits (669), Expect = 1e-68
Identities = 124/132 (93%), Positives = 128/132 (96%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIATLTEPIDLCI LKIERNRGYSLK+SNN EDRSYPIDAVFMPV+NANHSIH
Sbjct: 128 EIVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQHQVT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVT 247
Query: 38 LPFFPFHNRLVN 3
LPFFPFHNR N
Sbjct: 248 LPFFPFHNRFFN 259
[9][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 260 bits (665), Expect = 3e-68
Identities = 123/132 (93%), Positives = 130/132 (98%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIATLTEPI+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIH
Sbjct: 128 EIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLINLFIPFLHVEEETFYLENNQHQVT
Sbjct: 188 SYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYLENNQHQVT 247
Query: 38 LPFFPFHNRLVN 3
LP FPFHN+LVN
Sbjct: 248 LPVFPFHNKLVN 259
[10][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 258 bits (659), Expect = 1e-67
Identities = 123/132 (93%), Positives = 128/132 (96%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIAT+TE IDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIH
Sbjct: 128 EIVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF+LENNQHQVT
Sbjct: 188 SYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHLENNQHQVT 247
Query: 38 LPFFPFHNRLVN 3
LP FPFHNRLVN
Sbjct: 248 LPLFPFHNRLVN 259
[11][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 253 bits (647), Expect = 4e-66
Identities = 122/132 (92%), Positives = 125/132 (94%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIATLTE IDLCI LKIERNRGYSLK+ N FEDRSYPIDAVFMPV+NANHSIH
Sbjct: 128 EIIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGN KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQH VT
Sbjct: 188 SYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHHVT 247
Query: 38 LPFFPFHNRLVN 3
LP FPFHNRLVN
Sbjct: 248 LPLFPFHNRLVN 259
[12][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 251 bits (640), Expect = 2e-65
Identities = 119/131 (90%), Positives = 126/131 (96%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIATLTEPIDLCI L+IERNRGYSLKM N+FED SYPIDA+FMPV+NANHSIH
Sbjct: 128 EIIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG GNEKQEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYLENNQH+VT
Sbjct: 188 SYGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHKVT 247
Query: 38 LPFFPFHNRLV 6
LP FPFHNRLV
Sbjct: 248 LPLFPFHNRLV 258
[13][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 242 bits (617), Expect = 1e-62
Identities = 115/131 (87%), Positives = 123/131 (93%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIATLTEPIDLCI L+IERNRGYSLKM N FED SYPIDA+FMPV+NANHSIH
Sbjct: 128 EIMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG GNE QEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYLENN+ +VT
Sbjct: 188 SYGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNEDKVT 247
Query: 38 LPFFPFHNRLV 6
LP FPFHNRLV
Sbjct: 248 LPLFPFHNRLV 258
[14][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 238 bits (606), Expect = 2e-61
Identities = 112/130 (86%), Positives = 121/130 (93%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPIDL I L+IERNRGY +K NNF+D SYPIDAVFMPV+NANHSIH
Sbjct: 128 EIVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG GNEKQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLH EEE FYLENNQH+VT
Sbjct: 188 SYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLENNQHKVT 247
Query: 38 LPFFPFHNRL 9
LPFFPFH+RL
Sbjct: 248 LPFFPFHDRL 257
[15][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 231 bits (589), Expect = 2e-59
Identities = 108/131 (82%), Positives = 117/131 (89%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQH+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFMPV NANHSIH
Sbjct: 130 EIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIH 189
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LENNQH VT
Sbjct: 190 CYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLENNQHDVT 249
Query: 38 LPFFPFHNRLV 6
LPFFPFH+RLV
Sbjct: 250 LPFFPFHDRLV 260
[16][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 230 bits (587), Expect = 3e-59
Identities = 107/130 (82%), Positives = 118/130 (90%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPIDLCI L+IERNRGY +K NNF D SYPID VFMPV N NHSIH
Sbjct: 130 EIVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPVRNVNHSIH 189
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LEN+QH+VT
Sbjct: 190 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHLENSQHKVT 249
Query: 38 LPFFPFHNRL 9
LPFFPFH++L
Sbjct: 250 LPFFPFHDKL 259
[17][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 226 bits (575), Expect = 8e-58
Identities = 107/130 (82%), Positives = 117/130 (90%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIA+LTE IDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV NANHS+H
Sbjct: 128 EIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LE NQH+VT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVT 247
Query: 38 LPFFPFHNRL 9
LP F FH RL
Sbjct: 248 LPLFTFHGRL 257
[18][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 225 bits (574), Expect = 1e-57
Identities = 106/130 (81%), Positives = 118/130 (90%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQ+IA LTEPI+LCI L+IERNRGY +K NF+D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LENNQ++VT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQYKVT 247
Query: 38 LPFFPFHNRL 9
LPFF FH+RL
Sbjct: 248 LPFFTFHDRL 257
[19][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 223 bits (567), Expect = 7e-57
Identities = 106/130 (81%), Positives = 116/130 (89%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFMPV NANHSIH
Sbjct: 122 EIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIH 181
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+ T
Sbjct: 182 SYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKST 241
Query: 38 LPFFPFHNRL 9
LP FH+RL
Sbjct: 242 LPPLTFHDRL 251
[20][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 223 bits (567), Expect = 7e-57
Identities = 106/130 (81%), Positives = 116/130 (89%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNE+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+ T
Sbjct: 188 SYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKST 247
Query: 38 LPFFPFHNRL 9
LP FH+RL
Sbjct: 248 LPPLTFHDRL 257
[21][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 220 bits (560), Expect = 4e-56
Identities = 104/130 (80%), Positives = 114/130 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E +DNTQHIA LTEPID CIEL+IERNRGY +K NN +D SYPIDAVFMPV NANHSIH
Sbjct: 128 ETVDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH +EE LE+NQ+ VT
Sbjct: 188 SYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLEDNQNGVT 247
Query: 38 LPFFPFHNRL 9
LPFF FH+RL
Sbjct: 248 LPFFTFHDRL 257
[22][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 219 bits (559), Expect = 6e-56
Identities = 104/130 (80%), Positives = 116/130 (89%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFMPV NANHS+H
Sbjct: 128 EIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE+F+LE NQH++T
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHLEKNQHKIT 247
Query: 38 LPFFPFHNRL 9
LP F FH+RL
Sbjct: 248 LPLFAFHDRL 257
[23][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 219 bits (558), Expect = 7e-56
Identities = 104/130 (80%), Positives = 115/130 (88%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFMPV NANHS+H
Sbjct: 128 EIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE F+LE NQH++T
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLEKNQHKIT 247
Query: 38 LPFFPFHNRL 9
LP F FH+RL
Sbjct: 248 LPLFAFHDRL 257
[24][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 218 bits (554), Expect = 2e-55
Identities = 102/130 (78%), Positives = 114/130 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FMPV N NHSIH
Sbjct: 128 EIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F LENNQH+VT
Sbjct: 188 SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVT 247
Query: 38 LPFFPFHNRL 9
LP F FH+ L
Sbjct: 248 LPLFTFHDIL 257
[25][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 218 bits (554), Expect = 2e-55
Identities = 103/131 (78%), Positives = 114/131 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA LTEPI+LC+ELK+ERNRGY +K NN +D SY IDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEAL +ASRNLI+LFIPFLH EE+ LENNQ +VT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNLENNQQKVT 247
Query: 38 LPFFPFHNRLV 6
LP F FH+R V
Sbjct: 248 LPLFTFHDRFV 258
[26][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 218 bits (554), Expect = 2e-55
Identities = 102/130 (78%), Positives = 114/130 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FMPV N NHSIH
Sbjct: 128 EIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F LENNQH+VT
Sbjct: 188 SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVT 247
Query: 38 LPFFPFHNRL 9
LP F FH+ L
Sbjct: 248 LPLFTFHDIL 257
[27][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 218 bits (554), Expect = 2e-55
Identities = 102/130 (78%), Positives = 116/130 (89%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++NQH V
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVP 247
Query: 38 LPFFPFHNRL 9
L F FH++L
Sbjct: 248 LSPFTFHDKL 257
[28][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 217 bits (553), Expect = 3e-55
Identities = 102/130 (78%), Positives = 115/130 (88%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPID CI L+IERNRGY +K NF+D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++NQH V
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVP 247
Query: 38 LPFFPFHNRL 9
L F FH++L
Sbjct: 248 LSPFTFHDKL 257
[29][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 217 bits (552), Expect = 4e-55
Identities = 105/131 (80%), Positives = 115/131 (87%), Gaps = 1/131 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSI 222
EI+DNTQHIA+L EPIDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV NANHSI
Sbjct: 128 EIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSI 187
Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH EEE +L +NQH V
Sbjct: 188 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLHLADNQHTV 247
Query: 41 TLPFFPFHNRL 9
LP F FH +L
Sbjct: 248 PLPPFTFHEKL 258
[30][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 217 bits (552), Expect = 4e-55
Identities = 105/132 (79%), Positives = 114/132 (86%), Gaps = 1/132 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQH+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFMPV NANHSIH
Sbjct: 130 EIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIH 189
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
YGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFI FLH +EE +LENNQH VT
Sbjct: 190 CYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHLENNQHDVT 249
Query: 38 LP-FFPFHNRLV 6
L FFPFH RLV
Sbjct: 250 LHFFFPFHYRLV 261
[31][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 216 bits (550), Expect = 6e-55
Identities = 103/131 (78%), Positives = 114/131 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENNQH+VT
Sbjct: 188 SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKVT 247
Query: 38 LPFFPFHNRLV 6
LP F FH+RL+
Sbjct: 248 LPLFTFHDRLL 258
[32][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 216 bits (550), Expect = 6e-55
Identities = 101/130 (77%), Positives = 115/130 (88%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+ YL++NQH V
Sbjct: 188 SYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVP 247
Query: 38 LPFFPFHNRL 9
L F FH++L
Sbjct: 248 LSPFTFHDKL 257
[33][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 216 bits (550), Expect = 6e-55
Identities = 101/130 (77%), Positives = 115/130 (88%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+ YL++NQH V
Sbjct: 188 SYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVP 247
Query: 38 LPFFPFHNRL 9
L F FH++L
Sbjct: 248 LSPFTFHDKL 257
[34][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 216 bits (549), Expect = 8e-55
Identities = 103/130 (79%), Positives = 117/130 (90%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA+LTEPIDLCIEL+IERNRGY +K NN ++RSYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWT+GSLTPKEAL++ASRNLI+LFIPFLH EE+ LE+NQ +VT
Sbjct: 188 SYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLEDNQSRVT 247
Query: 38 LPFFPFHNRL 9
LPFF FH+ L
Sbjct: 248 LPFFTFHDGL 257
[35][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 215 bits (547), Expect = 1e-54
Identities = 102/130 (78%), Positives = 114/130 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIID TQHIA+LTEPIDLCI L+IERNRGY++K N +D YPIDAVFMPV NANHSIH
Sbjct: 128 EIIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE F L++NQ++V
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFILKDNQNKVA 247
Query: 38 LPFFPFHNRL 9
LP F FH+RL
Sbjct: 248 LPLFTFHDRL 257
[36][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 214 bits (544), Expect = 3e-54
Identities = 101/130 (77%), Positives = 112/130 (86%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE +L NN++ VT
Sbjct: 188 SYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGNNKYNVT 247
Query: 38 LPFFPFHNRL 9
P F FH +L
Sbjct: 248 FPLFTFHKKL 257
[37][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 214 bits (544), Expect = 3e-54
Identities = 100/130 (76%), Positives = 115/130 (88%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTE ID CI L+I+RNRGY +K +NF+D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++NQH V
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHTVP 247
Query: 38 LPFFPFHNRL 9
L F FH++L
Sbjct: 248 LSPFTFHDKL 257
[38][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 214 bits (544), Expect = 3e-54
Identities = 102/131 (77%), Positives = 116/131 (88%), Gaps = 1/131 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSI 222
E++DNTQHIA+LTEPI+LCI L+IERNRGY +K +NN +D SYPIDAVFMPV NANHSI
Sbjct: 128 EVVDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRNANHSI 187
Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
HSYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L NNQH V
Sbjct: 188 HSYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLANNQHMV 247
Query: 41 TLPFFPFHNRL 9
LP F FH++L
Sbjct: 248 PLPPFTFHDKL 258
[39][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 213 bits (543), Expect = 4e-54
Identities = 101/130 (77%), Positives = 114/130 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA+LTEP DLCI L+IERNRGY +K N ++ SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE+NQ++VT
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIILEDNQNRVT 247
Query: 38 LPFFPFHNRL 9
LPFF FH+ L
Sbjct: 248 LPFFTFHDGL 257
[40][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 213 bits (543), Expect = 4e-54
Identities = 101/132 (76%), Positives = 115/132 (87%), Gaps = 2/132 (1%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA L EPI+LCIELKIERNRGY ++ NNF+D SYP+DA+FMPV N NHSIH
Sbjct: 128 EIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE--ETFYLENNQHQ 45
SY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE E F+L+NN+ +
Sbjct: 188 SYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKK 247
Query: 44 VTLPFFPFHNRL 9
VTLP F FH +L
Sbjct: 248 VTLPLFTFHEKL 259
[41][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 213 bits (542), Expect = 5e-54
Identities = 102/130 (78%), Positives = 114/130 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPIDLCI L+I+RNRGY +KM +NF+D SYPIDAVFMPV NANHSIH
Sbjct: 102 EIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNANHSIH 161
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEE LE+NQH V
Sbjct: 162 SYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDNQHTVP 221
Query: 38 LPFFPFHNRL 9
L FH++L
Sbjct: 222 LSPLTFHDKL 231
[42][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 213 bits (542), Expect = 5e-54
Identities = 101/130 (77%), Positives = 115/130 (88%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPIDLCI L++ERNRGY +K NNF+D S+PIDA+FMPV N NHSIH
Sbjct: 128 EIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH EE LE+NQH+V+
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEENV-NLEDNQHKVS 246
Query: 38 LPFFPFHNRL 9
LP F FHNRL
Sbjct: 247 LPLFTFHNRL 256
[43][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 213 bits (542), Expect = 5e-54
Identities = 100/132 (75%), Positives = 115/132 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHSIH
Sbjct: 128 EIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE+N ++ T
Sbjct: 188 SYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVLEDNPNRFT 247
Query: 38 LPFFPFHNRLVN 3
+P F FH+RL N
Sbjct: 248 VPLFTFHDRLAN 259
[44][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 213 bits (541), Expect = 7e-54
Identities = 100/131 (76%), Positives = 115/131 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEPIDL IEL++ERNRGY +K NNF+D SYPID VFMPV N NHSIH
Sbjct: 128 EIVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVRNVNHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFL+ E+E F+LE+NQ +VT
Sbjct: 188 SYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLEDNQDRVT 247
Query: 38 LPFFPFHNRLV 6
LP F FH+RL+
Sbjct: 248 LPLFLFHDRLI 258
[45][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 212 bits (540), Expect = 9e-54
Identities = 103/130 (79%), Positives = 112/130 (86%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA LTEPI LCIEL+IERNRGY +K NNF++ SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGNE QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPF H EE +LENNQH+ T
Sbjct: 188 SYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HLENNQHKGT 244
Query: 38 LPFFPFHNRL 9
LP F FH RL
Sbjct: 245 LPLFNFHGRL 254
[46][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 212 bits (540), Expect = 9e-54
Identities = 101/130 (77%), Positives = 114/130 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA L EPI+LCI L+IERNRGY +K NF+D SYPIDAVFMP+ NAN+SIH
Sbjct: 128 EIVDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPIRNANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH+EE+ +LENNQH V
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHLENNQHTVP 247
Query: 38 LPFFPFHNRL 9
L F FH++L
Sbjct: 248 LAPFFFHDKL 257
[47][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 211 bits (538), Expect = 2e-53
Identities = 100/130 (76%), Positives = 111/130 (85%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGN NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE +L N++ VT
Sbjct: 188 SYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGKNKYNVT 247
Query: 38 LPFFPFHNRL 9
P F FH +L
Sbjct: 248 FPLFTFHKKL 257
[48][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 211 bits (538), Expect = 2e-53
Identities = 100/130 (76%), Positives = 113/130 (86%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA LTEPID CI L+IERNRGY LK +NFED SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ +H +
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDGEHTIP 247
Query: 38 LPFFPFHNRL 9
L FH+++
Sbjct: 248 LSPLSFHDKV 257
[49][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 210 bits (534), Expect = 4e-53
Identities = 99/128 (77%), Positives = 111/128 (86%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E+IDNTQHIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFMPV NANHSIH
Sbjct: 127 EVIDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIH 186
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGN+KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENNQH++T
Sbjct: 187 SYVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKMT 246
Query: 38 LPFFPFHN 15
LP F FH+
Sbjct: 247 LPLFTFHD 254
[50][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 210 bits (534), Expect = 4e-53
Identities = 99/132 (75%), Positives = 112/132 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEPIDLCI L+IER+RGY LK NN++D SYPID VFMPV NANHSIH
Sbjct: 128 EIVDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNG EKQEILFLEIWTNGSLTPKEAL++ASRNLINLFIPFLH EE+ LE++++ T
Sbjct: 188 SYGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILLEDSENIST 247
Query: 38 LPFFPFHNRLVN 3
+P F FHN L N
Sbjct: 248 VPLFTFHNELAN 259
[51][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 209 bits (532), Expect = 8e-53
Identities = 98/132 (74%), Positives = 113/132 (85%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEP+DLCIELKIER RGY ++ NN++D SYPIDAV MPV NANHSIH
Sbjct: 128 EIVDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ +E+N + T
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINIEDNLKRAT 247
Query: 38 LPFFPFHNRLVN 3
+PFF FH+ L N
Sbjct: 248 VPFFTFHDGLDN 259
[52][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 209 bits (532), Expect = 8e-53
Identities = 103/134 (76%), Positives = 116/134 (86%), Gaps = 4/134 (2%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFE--DRSYPIDAVFMPVENANHS 225
EIIDNTQHIA+LT+ IDLCI L+IERNRGY +K +NNF+ D SY IDAVFMPV NANHS
Sbjct: 128 EIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMPVRNANHS 187
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL--ENNQ 51
+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+ FIPFLH EEE +L E NQ
Sbjct: 188 VHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLHLEIEKNQ 247
Query: 50 HQVTLPFFPFHNRL 9
H+VTLP F FH++L
Sbjct: 248 HKVTLPLFCFHDKL 261
[53][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 209 bits (532), Expect = 8e-53
Identities = 98/132 (74%), Positives = 114/132 (86%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA+LTEPIDLCIEL+I+R+RGY +K N +++ SYPIDAV MPV NANHSIH
Sbjct: 128 EIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE LE+N ++
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRLEDNPNRFN 247
Query: 38 LPFFPFHNRLVN 3
+PFF FH+ L N
Sbjct: 248 IPFFTFHDGLAN 259
[54][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 208 bits (529), Expect = 2e-52
Identities = 99/132 (75%), Positives = 112/132 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEPIDLCIEL+I+R+RGY +K +NN +D SYPIDAV MPV NANHSIH
Sbjct: 128 EIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N+++
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFP 247
Query: 38 LPFFPFHNRLVN 3
LP F F NRL N
Sbjct: 248 LPLFTFQNRLTN 259
[55][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 208 bits (529), Expect = 2e-52
Identities = 101/131 (77%), Positives = 116/131 (88%), Gaps = 1/131 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS-YPIDAVFMPVENANHSI 222
EI+DNTQHIA+LTEPIDL I L+IER+RGY++K N F+D + YPIDAVFMPV NANHSI
Sbjct: 128 EIVDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMPVRNANHSI 187
Query: 221 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQV 42
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASR+LI+LFIPFL E+E LENNQ++V
Sbjct: 188 QSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLPLENNQYKV 247
Query: 41 TLPFFPFHNRL 9
TLPFF FH+RL
Sbjct: 248 TLPFFTFHDRL 258
[56][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 207 bits (527), Expect = 3e-52
Identities = 98/132 (74%), Positives = 115/132 (87%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIATLTEP+DL I L+I+R+RGY ++ +NN +D SYPIDAVFMPV NANHSI+
Sbjct: 128 EIVDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVRNANHSIY 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE N+ + T
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLEENKSRFT 247
Query: 38 LPFFPFHNRLVN 3
LP F FH++LVN
Sbjct: 248 LPLFTFHDKLVN 259
[57][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 207 bits (526), Expect = 4e-52
Identities = 98/131 (74%), Positives = 111/131 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DN QHIA +TEP+ LCIELKIERNRGY +K NF+D SY IDA FMPV N N+SIH
Sbjct: 128 EIVDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI LFIPFLH EE+ F+LE NQH+VT
Sbjct: 188 SYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHLEKNQHKVT 247
Query: 38 LPFFPFHNRLV 6
LP F FH+ LV
Sbjct: 248 LPLFTFHDILV 258
[58][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 205 bits (522), Expect = 1e-51
Identities = 99/129 (76%), Positives = 111/129 (86%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPIDLCI L+IERNRGY +KM +N +D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNEK EILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEET LE+N H V
Sbjct: 188 SYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLEDNHHTVP 247
Query: 38 LPFFPFHNR 12
L FH++
Sbjct: 248 LSPLTFHDK 256
[59][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 205 bits (522), Expect = 1e-51
Identities = 95/132 (71%), Positives = 114/132 (86%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+I+D TQ+IA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHSIH
Sbjct: 128 KIVDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGS TPKEAL++ASRNLI+LF+PFLH EE+ +E+NQ++ T
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINVEDNQNRAT 247
Query: 38 LPFFPFHNRLVN 3
P F FH+ L N
Sbjct: 248 APLFTFHDGLTN 259
[60][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 204 bits (518), Expect = 3e-51
Identities = 97/131 (74%), Positives = 111/131 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DN QHIA +TEP++LCIELKIERNRGY +K NF+D SY IDA FMPV N N+SIH
Sbjct: 128 EIVDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGNEKQEILFLEIWTNGSLTPKEAL++AS+NLI+LFIPFLH EEE F LE +H+VT
Sbjct: 188 SYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNLEKKKHKVT 247
Query: 38 LPFFPFHNRLV 6
LP F FH+ LV
Sbjct: 248 LPLFTFHDILV 258
[61][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 203 bits (516), Expect = 5e-51
Identities = 96/132 (72%), Positives = 112/132 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E++D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV NANHSIH
Sbjct: 128 EVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE E NQ++ T
Sbjct: 188 SYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFT 247
Query: 38 LPFFPFHNRLVN 3
+P F F +RL N
Sbjct: 248 VPPFTFPDRLAN 259
[62][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 203 bits (516), Expect = 5e-51
Identities = 96/132 (72%), Positives = 112/132 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E++D TQHIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV NANHSIH
Sbjct: 128 EVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGN+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE E NQ++ T
Sbjct: 188 SYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFT 247
Query: 38 LPFFPFHNRLVN 3
+P F F +RL N
Sbjct: 248 VPPFTFPDRLAN 259
[63][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 202 bits (515), Expect = 7e-51
Identities = 99/133 (74%), Positives = 115/133 (86%), Gaps = 3/133 (2%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSI 222
E++DNTQHIA+LTEPI+L I L+IER+RGY +K +NNF+D SYPIDAVFMP+ NANHSI
Sbjct: 128 EVVDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRNANHSI 187
Query: 221 HSYGNGN--EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQH 48
HSYGNGN +KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L +NQH
Sbjct: 188 HSYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLADNQH 247
Query: 47 QVTLPFFPFHNRL 9
V LP F FH+ L
Sbjct: 248 MVPLPPFTFHDNL 260
[64][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 202 bits (515), Expect = 7e-51
Identities = 98/134 (73%), Positives = 116/134 (86%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA+LTEPI+LCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHSIH
Sbjct: 128 EIVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQ 45
SYG+GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ + LE+NQ++
Sbjct: 188 SYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNR 247
Query: 44 VTLPFFPFHNRLVN 3
T+ F H+RL N
Sbjct: 248 FTVSPFTLHDRLGN 261
[65][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 202 bits (514), Expect = 9e-51
Identities = 97/132 (73%), Positives = 111/132 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEPIDL IEL+I+R+RGY + +NN +D SYPIDAV MPV NANHSIH
Sbjct: 126 EIVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNANHSIH 185
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE + E N+++ T
Sbjct: 186 SYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHFEENKNRFT 245
Query: 38 LPFFPFHNRLVN 3
LP F F NRL N
Sbjct: 246 LPLFTFQNRLTN 257
[66][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 201 bits (512), Expect = 2e-50
Identities = 97/132 (73%), Positives = 112/132 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEPIDL IEL+I+R+RGY ++ +NN +D SYPIDAV MPV NANHSIH
Sbjct: 128 EIVDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N+++ T
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
LPF F +RL N
Sbjct: 248 LPFLTFQDRLTN 259
[67][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 201 bits (511), Expect = 2e-50
Identities = 99/133 (74%), Positives = 113/133 (84%), Gaps = 2/133 (1%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDA--VFMPVENANHS 225
EI+DNTQHIA LTEPI+LCIEL+IER RGY K +N +D SY ID VFMPV +AN+S
Sbjct: 128 EIVDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFMPVIHANYS 187
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY N NEKQEILFLEIWTNGSLTPKEAL++A+RNLI+LFIPFLH EEE F+ ENNQH+
Sbjct: 188 IHSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENFHFENNQHK 247
Query: 44 VTLPFFPFHNRLV 6
VTLP F FH+RLV
Sbjct: 248 VTLPLFAFHDRLV 260
[68][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 200 bits (509), Expect = 4e-50
Identities = 96/132 (72%), Positives = 111/132 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQ+IA LTEPIDLCIEL+I+R+RGY +K N +D SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINFEENKNKFT 247
Query: 38 LPFFPFHNRLVN 3
LP F +RL N
Sbjct: 248 LPPLTFQDRLSN 259
[69][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 200 bits (508), Expect = 5e-50
Identities = 95/129 (73%), Positives = 108/129 (83%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
I+DNTQHIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV NANHSIHS
Sbjct: 129 IVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
Y NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENN+H+VTL
Sbjct: 189 YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTL 248
Query: 35 PFFPFHNRL 9
P F H+ L
Sbjct: 249 PLFTCHDLL 257
[70][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 199 bits (507), Expect = 6e-50
Identities = 99/130 (76%), Positives = 109/130 (83%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA L EPIDLCI L+IERNRGY+ SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDNTQHIARLMEPIDLCIGLQIERNRGYN---------GSYPIDAVFMPVRNANHSIH 178
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNG+E+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE NQH+ T
Sbjct: 179 SYGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKGT 238
Query: 38 LPFFPFHNRL 9
LP FH+RL
Sbjct: 239 LPPLTFHDRL 248
[71][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 199 bits (505), Expect = 1e-49
Identities = 96/125 (76%), Positives = 108/125 (86%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EIIDNTQHIA+LTEPI+LCI L+IERNRGY +K + NF+D SYPIDAVFMPV N NHSI+
Sbjct: 128 EIIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPVRNVNHSIY 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG GN+K EILFLEIWTNGSLTPKEALH+A+RNLI+LFIPFLH EEE LE+NQH
Sbjct: 188 SYGTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDLEDNQHM-- 245
Query: 38 LPFFP 24
LPF P
Sbjct: 246 LPFRP 250
[72][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 199 bits (505), Expect = 1e-49
Identities = 93/128 (72%), Positives = 110/128 (85%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTE +DLCI+L+IER+RGYS+K +N ED SYPIDA+FMPV NANHS+H
Sbjct: 128 EIVDATQHIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPVRNANHSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +LE+N + V
Sbjct: 188 SYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHLEDNANGVP 247
Query: 38 LPFFPFHN 15
L F FH+
Sbjct: 248 LALFTFHD 255
[73][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 199 bits (505), Expect = 1e-49
Identities = 96/134 (71%), Positives = 111/134 (82%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEP+DLCIELKIER RGY + NN++D SYPIDAV MPV NANHSIH
Sbjct: 128 EIVDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF--YLENNQHQ 45
SYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ +E+N +
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINRNMEDNLKR 247
Query: 44 VTLPFFPFHNRLVN 3
++PFF F + L N
Sbjct: 248 ASVPFFAFDDGLDN 261
[74][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 198 bits (504), Expect = 1e-49
Identities = 96/129 (74%), Positives = 110/129 (85%), Gaps = 1/129 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA+LTEP+D CI L+IE NRGY +K NN + SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ-HQV 42
SYGNGNE QEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ L++NQ + V
Sbjct: 188 SYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLKDNQKNGV 247
Query: 41 TLPFFPFHN 15
TLPFF FH+
Sbjct: 248 TLPFFTFHD 256
[75][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 198 bits (503), Expect = 2e-49
Identities = 95/132 (71%), Positives = 109/132 (82%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEPIDLCI L+I R+RGY K + N ++ SYPIDAV MPV NANHSIH
Sbjct: 128 EIVDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE + N+++ T
Sbjct: 188 SYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFKENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
LP F F +RL N
Sbjct: 248 LPIFTFQDRLTN 259
[76][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 197 bits (502), Expect = 2e-49
Identities = 97/130 (74%), Positives = 111/130 (85%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV NANHSIH
Sbjct: 128 EIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ H ++
Sbjct: 188 SY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTIS 245
Query: 38 LPFFPFHNRL 9
L F ++++
Sbjct: 246 LSPFTVYDKV 255
[77][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 196 bits (497), Expect = 9e-49
Identities = 96/134 (71%), Positives = 113/134 (84%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPI--DAVFMPVENANHS 225
+++D TQHIA+LTEPIDLCI L+IER+RGY +K NN +D SYPI +AV MPV NANHS
Sbjct: 128 KMVDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSMPVRNANHS 187
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSYGNGNEKQEILFLEIWTNGSLTPKEALH+AS NLI+LFIPFLH EEE LE++ ++
Sbjct: 188 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDINLEDSLNR 247
Query: 44 VTLPFFPFHNRLVN 3
TLPFF F ++L N
Sbjct: 248 GTLPFFTFQDKLAN 261
[78][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 195 bits (495), Expect = 1e-48
Identities = 98/126 (77%), Positives = 108/126 (85%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV+NANHSIH
Sbjct: 128 EIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E LE+ H T
Sbjct: 188 SY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADH--T 243
Query: 38 LPFFPF 21
+P PF
Sbjct: 244 IPLSPF 249
[79][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 195 bits (495), Expect = 1e-48
Identities = 98/126 (77%), Positives = 108/126 (85%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D+TQHIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV+NANHSIH
Sbjct: 128 EIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E LE+ H T
Sbjct: 188 SY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADH--T 243
Query: 38 LPFFPF 21
+P PF
Sbjct: 244 IPLSPF 249
[80][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 194 bits (492), Expect = 3e-48
Identities = 94/130 (72%), Positives = 109/130 (83%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIATLTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIH
Sbjct: 128 EIVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+NQH +
Sbjct: 188 SYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHMIP 245
Query: 38 LPFFPFHNRL 9
LP F F+++L
Sbjct: 246 LPPFTFYDKL 255
[81][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 192 bits (489), Expect = 7e-48
Identities = 97/130 (74%), Positives = 106/130 (81%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI DNTQHIA LTEPI CI L+IER+RGY +K + F+DRSYPIDAVFMPV N NHSIH
Sbjct: 113 EIGDNTQHIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNVNHSIH 172
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGN EKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE LENNQ V+
Sbjct: 173 SYGN--EKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLENNQDTVS 230
Query: 38 LPFFPFHNRL 9
F FH +L
Sbjct: 231 FSPFSFHEKL 240
[82][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 192 bits (489), Expect = 7e-48
Identities = 96/126 (76%), Positives = 107/126 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E++D+TQHIA L EPIDLCI LKIERNRGY LK NFED SYPIDAVFMPV+NANHSIH
Sbjct: 128 EVVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY GNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E +LE+ T
Sbjct: 188 SY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHLEDADR--T 243
Query: 38 LPFFPF 21
+P PF
Sbjct: 244 IPLSPF 249
[83][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 191 bits (486), Expect = 2e-47
Identities = 94/130 (72%), Positives = 109/130 (83%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIH
Sbjct: 128 EIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+NQH V
Sbjct: 188 SYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHIVP 245
Query: 38 LPFFPFHNRL 9
LP F F+++L
Sbjct: 246 LPPFTFYDKL 255
[84][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 191 bits (486), Expect = 2e-47
Identities = 94/130 (72%), Positives = 109/130 (83%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIH
Sbjct: 128 EIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGN +EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+NQH V
Sbjct: 188 SYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSLEDNQHIVP 245
Query: 38 LPFFPFHNRL 9
LP F F+++L
Sbjct: 246 LPPFTFYDKL 255
[85][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 191 bits (484), Expect = 3e-47
Identities = 90/132 (68%), Positives = 108/132 (81%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEPI+LCIEL+I+R+RGY +K +N+ D SYPID V MPV NANHSIH
Sbjct: 128 EIVDTTQHIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGNGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI+L IPFLH EEE + N+++
Sbjct: 188 SYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNFKENENRWN 247
Query: 38 LPFFPFHNRLVN 3
LP F F ++ N
Sbjct: 248 LPPFSFQDKFTN 259
[86][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 189 bits (481), Expect = 6e-47
Identities = 93/130 (71%), Positives = 108/130 (83%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIH
Sbjct: 128 EILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY NGN +EILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH +EE LE NQH V
Sbjct: 188 SYENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNLEGNQHMVP 245
Query: 38 LPFFPFHNRL 9
LP F F+++L
Sbjct: 246 LPPFTFYDKL 255
[87][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 184 bits (468), Expect = 2e-45
Identities = 89/130 (68%), Positives = 107/130 (82%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+I+D TQHIA++TEPI+ CI L+IERNRGY + +N +D SYPIDAV MPV NAN+SI
Sbjct: 128 KIVDTTQHIASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSMPVRNANYSIQ 185
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
YGN NEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +L+++Q+ T
Sbjct: 186 CYGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHLDDDQNIFT 245
Query: 38 LPFFPFHNRL 9
PFFPFH L
Sbjct: 246 APFFPFHEGL 255
[88][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 184 bits (467), Expect = 3e-45
Identities = 93/126 (73%), Positives = 105/126 (83%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D+TQHIA LTEPI+ I LKIERN GY +K NFED SYPIDA+FMPV NANHSI+
Sbjct: 128 EIVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPVRNANHSIN 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYGN EKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ H T
Sbjct: 188 SYGN--EKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADH--T 243
Query: 38 LPFFPF 21
+P PF
Sbjct: 244 IPLSPF 249
[89][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 184 bits (466), Expect = 3e-45
Identities = 90/132 (68%), Positives = 104/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQHIA LTEPIDLCIEL+I+R+RGY + N +D SYPIDAV MPV N N+SI+
Sbjct: 128 EIVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVRNVNYSIY 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GN NEK EILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N+++ T
Sbjct: 188 SCGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
LP F RL N
Sbjct: 248 LPLLTFQKRLTN 259
[90][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 181 bits (460), Expect = 2e-44
Identities = 87/132 (65%), Positives = 104/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D +Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 133 EIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 192
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 193 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 252
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 253 PPLFTFQKRLTN 264
[91][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 181 bits (460), Expect = 2e-44
Identities = 87/132 (65%), Positives = 104/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D +Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[92][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 181 bits (459), Expect = 2e-44
Identities = 87/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[93][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 180 bits (457), Expect = 4e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[94][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[95][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[96][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[97][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 180 bits (456), Expect = 5e-44
Identities = 88/130 (67%), Positives = 106/130 (81%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FMPV+NANHSIH
Sbjct: 128 QIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE YL + +H +
Sbjct: 188 SY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIX 245
Query: 38 LPFFPFHNRL 9
LP F+N++
Sbjct: 246 LPPLIFYNKV 255
[98][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[99][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 180 bits (456), Expect = 5e-44
Identities = 88/130 (67%), Positives = 106/130 (81%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FMPV+NANHSIH
Sbjct: 128 QIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY GNEKQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE YL + +H +
Sbjct: 188 SY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIP 245
Query: 38 LPFFPFHNRL 9
LP F+N++
Sbjct: 246 LPPLIFYNKV 255
[100][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 180 bits (456), Expect = 5e-44
Identities = 88/130 (67%), Positives = 105/130 (80%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+I+DNTQHIA LTEPID I LKIERNRGY K+ +F+D YPIDA+FMPV+NANHSIH
Sbjct: 128 QIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPVQNANHSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY GNEKQEILFLEIWTNGSLTPKEALH+A+R LI+ FIPF H+EEE YL + +H +
Sbjct: 188 SY--GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYLADAEHTIP 245
Query: 38 LPFFPFHNRL 9
L F+N++
Sbjct: 246 LSSLIFYNKV 255
[101][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[102][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[103][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[104][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[105][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[106][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[107][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[108][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[109][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[110][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 180 bits (456), Expect = 5e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[111][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 179 bits (455), Expect = 6e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[112][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 179 bits (455), Expect = 6e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[113][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 179 bits (455), Expect = 6e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[114][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 179 bits (455), Expect = 6e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[115][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 179 bits (455), Expect = 6e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNLNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[116][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 179 bits (455), Expect = 6e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFKKRLTN 259
[117][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 179 bits (455), Expect = 6e-44
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFKKRLTN 259
[118][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 179 bits (454), Expect = 8e-44
Identities = 85/132 (64%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E++D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EVVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[119][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 179 bits (453), Expect = 1e-43
Identities = 87/122 (71%), Positives = 102/122 (83%), Gaps = 3/122 (2%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVFMPVENANHS 225
I+DNTQHI TLTEPID C+ L+IERNRGYS+K+ +N+ +DR YPIDAVFMPV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVFMPVKNVNHS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IH+Y NG+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE +LENNQ+Q
Sbjct: 189 IHAYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENSHLENNQNQ 246
Query: 44 VT 39
T
Sbjct: 247 HT 248
[120][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 178 bits (452), Expect = 1e-43
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPPFTFQKRLTN 259
[121][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPPFTFKKRLTN 259
[122][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 178 bits (451), Expect = 2e-43
Identities = 85/132 (64%), Positives = 102/132 (77%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E +D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 ETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[123][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 177 bits (450), Expect = 2e-43
Identities = 85/132 (64%), Positives = 102/132 (77%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQ IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+SI
Sbjct: 128 EIVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E N++++T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLT 247
Query: 38 LPFFPFHNRLVN 3
P F R N
Sbjct: 248 PPLLTFQKRFTN 259
[124][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 177 bits (450), Expect = 2e-43
Identities = 85/132 (64%), Positives = 102/132 (77%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA L EPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[125][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 177 bits (450), Expect = 2e-43
Identities = 85/132 (64%), Positives = 102/132 (77%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDA MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[126][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 177 bits (449), Expect = 3e-43
Identities = 89/122 (72%), Positives = 101/122 (82%), Gaps = 3/122 (2%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLK--MSNNF-EDRSYPIDAVFMPVENANHS 225
I+DNTQHI TLTEPID CI L+I+RNRGYS K M NF +DR YPIDAVF+PV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVFLPVKNVNHS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NG+ E+LFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE F+ ENNQ++
Sbjct: 189 IHSYENGSH--EMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFHFENNQNE 246
Query: 44 VT 39
T
Sbjct: 247 HT 248
[127][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 177 bits (449), Expect = 3e-43
Identities = 84/132 (63%), Positives = 102/132 (77%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQ IA L EP+D CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+SI
Sbjct: 128 EIVDTTQPIANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E N++++T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLT 247
Query: 38 LPFFPFHNRLVN 3
P F R N
Sbjct: 248 PPLLTFQKRFTN 259
[128][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 176 bits (447), Expect = 5e-43
Identities = 85/132 (64%), Positives = 102/132 (77%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNG EK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[129][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 176 bits (447), Expect = 5e-43
Identities = 86/132 (65%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 248 PPLLTFQKRLTN 259
[130][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 176 bits (445), Expect = 9e-43
Identities = 84/132 (63%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D TQ IA L EP+D CIEL+I+R+R Y ++ N +D SYPIDAVFMPV N N+SI
Sbjct: 128 EIVDTTQPIANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N++++T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSFEENKNRLT 247
Query: 38 LPFFPFHNRLVN 3
P F R N
Sbjct: 248 PPLLTFQKRFTN 259
[131][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 175 bits (443), Expect = 2e-42
Identities = 86/126 (68%), Positives = 106/126 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D+TQHIA+LTEPI+LCI LKIERNRGY +K F++ +Y +DAVFMPV N NHSI+
Sbjct: 128 EIVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPVLNVNHSIY 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SY GNEK+EILFLEIWTNGSLTPKEALH+A++NL++LFIPFL +EEE LE+ +HQ+
Sbjct: 188 SY--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNLEDAEHQI- 244
Query: 38 LPFFPF 21
PF PF
Sbjct: 245 -PFSPF 249
[132][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 175 bits (443), Expect = 2e-42
Identities = 84/132 (63%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPI V MPV N N+SI
Sbjct: 128 EIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F F RL N
Sbjct: 248 PPLFTFQKRLTN 259
[133][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 174 bits (441), Expect = 3e-42
Identities = 84/132 (63%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M V N N+SI
Sbjct: 128 EIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 248 PPLLTFQKRLTN 259
[134][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 174 bits (440), Expect = 4e-42
Identities = 83/132 (62%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+SI
Sbjct: 128 EIVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E +++++T
Sbjct: 188 SCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEESKNRLT 247
Query: 38 LPFFPFHNRLVN 3
P F R N
Sbjct: 248 PPLLTFQKRFTN 259
[135][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 172 bits (436), Expect = 1e-41
Identities = 84/132 (63%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
GNGNEK EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T
Sbjct: 188 YCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F +L N
Sbjct: 248 PPLLTFQKKLTN 259
[136][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 172 bits (436), Expect = 1e-41
Identities = 83/120 (69%), Positives = 100/120 (83%), Gaps = 3/120 (2%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVFMPVENANHS 225
I+DNTQHI TLTEPI+ C+ L+IERNRGYSL++ +N+ ++R YPIDAVFMPV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVFMPVKNVNHS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NG+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE + ENNQ++
Sbjct: 189 IHSYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEKPHFENNQNE 246
[137][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 169 bits (428), Expect = 9e-41
Identities = 91/126 (72%), Positives = 101/126 (80%), Gaps = 7/126 (5%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKM---SNNFE-DRSYPI--DAVFMPVENA 234
I+DNTQHI TLTEPID C+ELKIER RGYS+K+ +N F D YPI DAVFMPV N
Sbjct: 129 IVDNTQHIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPIDAVFMPVRNV 188
Query: 233 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY-LEN 57
NHSI+SY G+ +EILFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE FY LEN
Sbjct: 189 NHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFYLLEN 246
Query: 56 NQHQVT 39
NQ+Q T
Sbjct: 247 NQNQHT 252
[138][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 168 bits (426), Expect = 1e-40
Identities = 84/122 (68%), Positives = 97/122 (79%), Gaps = 3/122 (2%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHS 225
I+DNTQHI TLTEPID C+ L+IERNRGY ++ +SN +DR YPIDAVFMPV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVFMPVKNVNHS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NG +LFLEIWTNGSLTPKEAL ASR LINLFIPFLH EE+ + ENNQ++
Sbjct: 189 IHSYENGIHA--MLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQNCHFENNQNE 246
Query: 44 VT 39
T
Sbjct: 247 HT 248
[139][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 168 bits (426), Expect = 1e-40
Identities = 87/130 (66%), Positives = 102/130 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+DNTQHIA+LTEPI+L I L+IE+NR LK N F+D SY I AV MPV + N+SIH
Sbjct: 128 EIVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPVRHMNYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNG KQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EE LENNQ ++
Sbjct: 188 SSGNG--KQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEGN--LENNQDRIP 243
Query: 38 LPFFPFHNRL 9
P F F+++L
Sbjct: 244 FPSFTFYDKL 253
[140][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 168 bits (425), Expect = 2e-40
Identities = 83/132 (62%), Positives = 98/132 (74%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 108 EIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 167
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + NQ++ T
Sbjct: 168 SCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENQNRFT 227
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 228 SPLLSFQKRLTN 239
[141][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 167 bits (424), Expect = 3e-40
Identities = 81/122 (66%), Positives = 98/122 (80%), Gaps = 3/122 (2%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHS 225
I+DNTQHI T+TEPID C+ L+IERNRGY ++ ++N +DR YPID+VFMPV+N NHS
Sbjct: 129 IVDNTQHIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVFMPVKNVNHS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 45
IHSY NG +LFLEIWTNGSLTPKEAL +ASR L NLFIPFLH EE+ F+ ENNQ++
Sbjct: 189 IHSYENGIHA--MLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQNFHFENNQNE 246
Query: 44 VT 39
T
Sbjct: 247 HT 248
[142][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 166 bits (421), Expect = 6e-40
Identities = 82/132 (62%), Positives = 98/132 (74%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 108 EIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 167
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 168 SCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFT 227
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 228 SPLLSFQKRLTN 239
[143][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 166 bits (421), Expect = 6e-40
Identities = 82/132 (62%), Positives = 99/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP+D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 108 EIVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNVNYSIF 167
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 168 SCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFT 227
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 228 SPLLSFQKRLTN 239
[144][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 166 bits (421), Expect = 6e-40
Identities = 86/124 (69%), Positives = 97/124 (78%), Gaps = 5/124 (4%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFE----DRSYPIDAVFMPVENANH 228
I+DNTQHI TLTEPID C+ LKIER RGYS+K+ + D +YPIDAVFMPV N NH
Sbjct: 129 IVDNTQHIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAVFMPVRNVNH 188
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL-ENNQ 51
SIHSY G+ E+LFLEIWTNGSLTPKEAL +ASR LINL +PFLH EEE FYL ENNQ
Sbjct: 189 SIHSYERGSH--EMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEENFYLVENNQ 246
Query: 50 HQVT 39
+Q T
Sbjct: 247 NQDT 250
[145][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 166 bits (419), Expect = 1e-39
Identities = 82/132 (62%), Positives = 98/132 (74%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 108 EIVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 167
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 168 SCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFT 227
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 228 SPLLSFQKRLTN 239
[146][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 165 bits (418), Expect = 1e-39
Identities = 81/132 (61%), Positives = 98/132 (74%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 216 EIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 275
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
+ GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 276 ACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFT 335
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 336 SPLLSFQKRLTN 347
[147][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 165 bits (418), Expect = 1e-39
Identities = 81/132 (61%), Positives = 98/132 (74%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
+ GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 188 ACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 248 SPLLSFQKRLTN 259
[148][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 165 bits (418), Expect = 1e-39
Identities = 81/132 (61%), Positives = 98/132 (74%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 237 EIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 296
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
+ GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 297 ACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFT 356
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 357 SPLLSFQKRLTN 368
[149][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 165 bits (418), Expect = 1e-39
Identities = 81/132 (61%), Positives = 98/132 (74%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 108 EIVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 167
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
+ GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 168 ACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFT 227
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 228 SPLLSFQKRLTN 239
[150][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 165 bits (418), Expect = 1e-39
Identities = 81/132 (61%), Positives = 98/132 (74%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 128 EIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
+ GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 188 ACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFT 247
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 248 SPLLSFQKRLTN 259
[151][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 164 bits (415), Expect = 3e-39
Identities = 80/132 (60%), Positives = 98/132 (74%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 237 EIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 296
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
+ GNGN + EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 297 ACGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFT 356
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 357 SPLLSFQKRLTN 368
[152][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 163 bits (412), Expect = 6e-39
Identities = 80/132 (60%), Positives = 97/132 (73%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 108 EIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 167
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
+ GNGN K EILFLEIWTNGSLTP EAL++ASRNLI+LF+PFLH EEE + N+++ T
Sbjct: 168 ACGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFT 227
Query: 38 LPFFPFHNRLVN 3
P F RL N
Sbjct: 228 SPLLSFQKRLTN 239
[153][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 162 bits (410), Expect = 1e-38
Identities = 79/132 (59%), Positives = 102/132 (77%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I+L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNRKGSN 247
Query: 38 LPFFPFHNRLVN 3
+P FP + L +
Sbjct: 248 MPPFPLSHVLTD 259
[154][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 162 bits (409), Expect = 1e-38
Identities = 80/132 (60%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[155][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/132 (60%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[156][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/132 (60%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[157][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/132 (60%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[158][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/132 (60%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[159][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/132 (60%), Positives = 101/132 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[160][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 160 bits (406), Expect = 3e-38
Identities = 79/127 (62%), Positives = 98/127 (77%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA+LT+ I I L IE++RGY ++ N++D +PIDAVFMPV NAN+SIHS
Sbjct: 129 IIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVRNANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGN+ QEILFLEIWTNGSL P+EAL++ASRNLI+LFIPFL EE+ +NQ+ +
Sbjct: 189 YGNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDGMDNQNGSNM 248
Query: 35 PFFPFHN 15
P F F N
Sbjct: 249 PSFSFSN 255
[161][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 159 bits (403), Expect = 7e-38
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSN 247
Query: 38 LPFFPFHNRLVN 3
+P FP + L +
Sbjct: 248 MPPFPLSHVLTD 259
[162][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 159 bits (403), Expect = 7e-38
Identities = 79/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV + N+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDVNYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[163][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 159 bits (401), Expect = 1e-37
Identities = 79/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N +
Sbjct: 188 SYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[164][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 159 bits (401), Expect = 1e-37
Identities = 79/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N +
Sbjct: 188 SYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[165][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 159 bits (401), Expect = 1e-37
Identities = 79/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N +
Sbjct: 188 SYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[166][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 158 bits (399), Expect = 2e-37
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHLLTD 259
[167][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 158 bits (399), Expect = 2e-37
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHLLTD 259
[168][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 158 bits (399), Expect = 2e-37
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHLLTD 259
[169][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 158 bits (399), Expect = 2e-37
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHLLTD 259
[170][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 158 bits (399), Expect = 2e-37
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHLLTD 259
[171][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 158 bits (399), Expect = 2e-37
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHLLTD 259
[172][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 157 bits (398), Expect = 3e-37
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[173][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 157 bits (398), Expect = 3e-37
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[174][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 157 bits (398), Expect = 3e-37
Identities = 78/132 (59%), Positives = 100/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[175][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 157 bits (396), Expect = 4e-37
Identities = 76/126 (60%), Positives = 97/126 (76%), Gaps = 1/126 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQHQV 42
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+ FIPFLH EE+ + N +
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNIDGINNRKGSS 247
Query: 41 TLPFFP 24
+P FP
Sbjct: 248 NMPPFP 253
[176][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 156 bits (395), Expect = 6e-37
Identities = 78/132 (59%), Positives = 98/132 (74%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL +ASR LI LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNIDGMNNRKGSN 247
Query: 38 LPFFPFHNRLVN 3
+P FP + L +
Sbjct: 248 MPPFPLSHVLTD 259
[177][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 156 bits (394), Expect = 8e-37
Identities = 77/132 (58%), Positives = 99/132 (75%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV + N+SIH
Sbjct: 128 KIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDVNYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSN 247
Query: 38 LPFFPFHNRLVN 3
+ FP + L +
Sbjct: 248 MLPFPLSHVLTD 259
[178][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 156 bits (394), Expect = 8e-37
Identities = 76/126 (60%), Positives = 97/126 (76%), Gaps = 1/126 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIH
Sbjct: 128 KIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQHQV 42
SYG+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+ + N +
Sbjct: 188 SYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSS 247
Query: 41 TLPFFP 24
+P FP
Sbjct: 248 NMPPFP 253
[179][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 155 bits (393), Expect = 1e-36
Identities = 77/130 (59%), Positives = 98/130 (75%)
Frame = -1
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
ID TQHIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSY
Sbjct: 130 IDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSY 189
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLP 33
G+GNE +E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN+ +
Sbjct: 190 GSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNML 249
Query: 32 FFPFHNRLVN 3
FP + L +
Sbjct: 250 PFPLSHVLTD 259
[180][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 152 bits (384), Expect = 1e-35
Identities = 74/108 (68%), Positives = 87/108 (80%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D Q IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI
Sbjct: 237 EIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIF 296
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ GNGN K EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 297 ACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEE 344
[181][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 150 bits (379), Expect = 4e-35
Identities = 73/125 (58%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQ+IAT+T+ I L IELKIE++ GY ++ D ++P+DAVFMP+ N N+S+H
Sbjct: 128 KIIDTTQYIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPIRNVNYSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNQHQV 42
S+ NGNE QEILFLEIWTNGS+TPKEAL++ASR+LINLFIPFLH E++ F Y N ++
Sbjct: 188 SFENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKEFIYGLKNTYES 247
Query: 41 TLPFF 27
+ +F
Sbjct: 248 NMSYF 252
[182][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 142 bits (359), Expect = 9e-33
Identities = 72/131 (54%), Positives = 96/131 (73%), Gaps = 1/131 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E+ID TQ+IATLT+ I L IELKIE++ GY + S D + +DAVF P+ NAN+S+H
Sbjct: 131 EVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVH 190
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EETFYLENNQHQV 42
S+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E EE + +N + +
Sbjct: 191 SFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHDKNESNTL 250
Query: 41 TLPFFPFHNRL 9
P N++
Sbjct: 251 HFSSSPSENKM 261
[183][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 142 bits (358), Expect = 1e-32
Identities = 70/126 (55%), Positives = 96/126 (76%), Gaps = 2/126 (1%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQ+IATLT+ I L IEL+IE++ GY ++ S D +PIDA+FMP+ NAN+S+H
Sbjct: 128 KIIDTTQYIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPIRNANYSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQ 45
S+ + N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++ LEN
Sbjct: 188 SFEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEIINGLENKYES 247
Query: 44 VTLPFF 27
+ +F
Sbjct: 248 NNMSYF 253
[184][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 142 bits (358), Expect = 1e-32
Identities = 67/108 (62%), Positives = 91/108 (84%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQ+IAT+T+PI L IEL+IE++ GY ++ S D +PIDA+FMP+ NAN+S+H
Sbjct: 128 KIIDTTQYIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPIRNANYSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
S+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 188 SFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKK 235
[185][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 142 bits (357), Expect = 1e-32
Identities = 72/125 (57%), Positives = 88/125 (70%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
IID TQHIA+L E I I +I ++RGY ++ NN D + DAV MPV NAN+SIHS
Sbjct: 129 IIDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPVRNANYSIHS 188
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTL 36
YGNGNE QEILF EIWTNGSL P EAL++ASRNLI+LFIPF+ EE+ +N + +
Sbjct: 189 YGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNIDGIDNWNGYNM 248
Query: 35 PFFPF 21
FPF
Sbjct: 249 SLFPF 253
[186][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 141 bits (355), Expect = 3e-32
Identities = 73/125 (58%), Positives = 92/125 (73%), Gaps = 2/125 (1%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E+ID TQ+IATLT+ I L IELKIE++ GY + S D + +DAVF P+ NAN+S+H
Sbjct: 131 EVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVH 190
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQ 45
S+ N NE QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E+E L N
Sbjct: 191 SFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHGLGNKNES 250
Query: 44 VTLPF 30
TL F
Sbjct: 251 NTLHF 255
[187][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 139 bits (351), Expect = 7e-32
Identities = 64/116 (55%), Positives = 92/116 (79%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+ ID++QHIAT+T+ I L IE++I+++RGY ++ S + + IDAVFMP+ AN+S+H
Sbjct: 128 QAIDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPIRKANYSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
S+GN + QEILF+EIWT+GSLTPKEAL++ASRNLI+LF+PFLH EEE + ++
Sbjct: 188 SFGNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEIISDRDE 243
[188][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 138 bits (347), Expect = 2e-31
Identities = 65/108 (60%), Positives = 89/108 (82%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID TQ+IAT+T+PI L IEL+I+++ GY + S D + IDA+FMP+ NAN+S+H
Sbjct: 128 KIIDTTQYIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPIRNANYSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
S+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 188 SFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKK 235
[189][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 137 bits (344), Expect = 5e-31
Identities = 67/126 (53%), Positives = 93/126 (73%), Gaps = 2/126 (1%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID Q+IATLT+ I L IEL+IE++ GY ++ SN + + IDA+FMP+ NAN+S+H
Sbjct: 128 KIIDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPIRNANYSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNQHQ 45
S+ N N+ QE+LF+EIWTNGS+TPK+AL++ASR+LI+LFIPFLH E LEN
Sbjct: 188 SFENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREIINELENEYKL 247
Query: 44 VTLPFF 27
+ +F
Sbjct: 248 SNISYF 253
[190][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 132 bits (333), Expect = 9e-30
Identities = 60/108 (55%), Positives = 85/108 (78%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E+ID TQHIAT+T+ + I+L I ++RGY ++ +ED ++ ++A F P+ NAN+S+H
Sbjct: 128 EVIDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNANYSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
S+ N EKQEILF+E+WTNGSLTPKEAL +AS++LINLFIP LH ++E
Sbjct: 188 SFENEKEKQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKE 235
[191][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 132 bits (332), Expect = 1e-29
Identities = 60/103 (58%), Positives = 85/103 (82%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHS 216
+IDNTQ++AT+T I L IEL IE++RGY ++ S + + +PIDAVFMP+ NAN+S+HS
Sbjct: 130 VIDNTQYVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRNANYSVHS 189
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
+G+ + +EIL LEIWTNGSLTP++AL++ASRNLI+LFIP ++
Sbjct: 190 FGSREKTKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMN 232
[192][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 132 bits (331), Expect = 2e-29
Identities = 68/134 (50%), Positives = 87/134 (64%), Gaps = 10/134 (7%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----------YPIDAVFMP 246
IID TQHIA + + I L I L+IE+ RGY ++ NN+ + +PIDA F P
Sbjct: 129 IIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVFPIDAAFAP 188
Query: 245 VENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
V+N N+SIHSY + NE QEILFLEIWTNG L PKEAL++ASRNLI+ F+PFL+ +EE
Sbjct: 189 VQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPFLNAKEENSD 248
Query: 65 LENNQHQVTLPFFP 24
N+ P P
Sbjct: 249 GTNSLSDDITPSLP 262
[193][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 129 bits (324), Expect = 1e-28
Identities = 56/108 (51%), Positives = 83/108 (76%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
++ID++Q+I T+T+PI + IEL IE + GY ++ N + D +P+DAVFMPV N N+S+H
Sbjct: 128 KVIDDSQYIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNVNYSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+G+G E +EILF+E+WTNGSLTP EA+ +AS++ I+L PFLH + E
Sbjct: 188 PFGSGKEMREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHE 235
[194][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 129 bits (323), Expect = 1e-28
Identities = 58/108 (53%), Positives = 84/108 (77%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID++Q+I T+T+PI + IE +IE++ GY ++ N + D +P+DAV MPV N N+S+H
Sbjct: 128 KIIDDSQYIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRNVNYSVH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+G+G E +EI F+EIWTNGS TP EAL +AS+NLI+L IPFLH++ E
Sbjct: 188 PFGSGREMREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHE 235
[195][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 127 bits (320), Expect = 3e-28
Identities = 63/124 (50%), Positives = 94/124 (75%), Gaps = 2/124 (1%)
Frame = -1
Query: 380 QHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGN 201
Q+IATL + I L IEL IE++RGY ++ +++ +P+DAVFMP+ NAN+S+HS+ +
Sbjct: 134 QYIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNANYSVHSFESEK 193
Query: 200 EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYLENNQHQVTLPFF 27
+ +EILFLEIWT+GSLTPKEAL++ASRNLI+LFIP ++ E E+ F +E ++ + +F
Sbjct: 194 KIKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNFGIEKT-NESNMSYF 252
Query: 26 PFHN 15
PF +
Sbjct: 253 PFQS 256
[196][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 124 bits (312), Expect = 2e-27
Identities = 60/96 (62%), Positives = 75/96 (78%), Gaps = 4/96 (4%)
Frame = -1
Query: 398 EIIDNTQH----IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENAN 231
++I N + IA L +PIDLCI L+I+RN YS+K NNF+D SYPID VFM V+NAN
Sbjct: 53 DLISNNNYSTILIARLKKPIDLCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNAN 112
Query: 230 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQAS 123
H+IH YGN NE+QEILFL++WTN +LTPKEA H+AS
Sbjct: 113 HNIHFYGNVNERQEILFLKLWTNKNLTPKEAFHEAS 148
[197][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 124 bits (311), Expect = 3e-27
Identities = 64/126 (50%), Positives = 85/126 (67%), Gaps = 1/126 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E IDN+Q+IAT+T+PI L IEL+IE++ GY ++ +PIDAVFMPV N N+SIH
Sbjct: 129 EAIDNSQYIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRNVNYSIH 188
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EETFYLENNQHQV 42
+G+G QEILF+EIWTNGSLTP EAL +AS L++L FL+V + EN + +
Sbjct: 189 LFGSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDSL 248
Query: 41 TLPFFP 24
L P
Sbjct: 249 DLTKSP 254
[198][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 122 bits (306), Expect = 1e-26
Identities = 62/125 (49%), Positives = 88/125 (70%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID +QHIAT+T I L +EL+IER+ GY + + IDA+F P+ NAN+SIH
Sbjct: 128 KIIDASQHIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPIRNANYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S+ + N+ +EILFLE+WTNGSLTP AL +ASR+LI+LFI FL++E+E E +++
Sbjct: 188 SFESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIKEIENNELN 247
Query: 38 LPFFP 24
+ FP
Sbjct: 248 IKNFP 252
[199][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 120 bits (300), Expect = 6e-26
Identities = 60/109 (55%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E+ D TQHIA LT+ + L IEL +E+ GY + D + ID+VFMPV NAN+S+H
Sbjct: 240 EVTDPTQHIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANYSVH 299
Query: 218 SYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
SY + + QEILFLEIWTNGS+TP+EALH+A+R LI+LF+PFLH +++
Sbjct: 300 SYESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKK 348
[200][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 113 bits (282), Expect = 7e-24
Identities = 55/110 (50%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFMPVENANHS 225
+IID TQHIA+LT+ + + L IERN+GY++ + S ++ +PIDA MPV N N S
Sbjct: 129 KIIDGTQHIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPCMPVRNVNFS 188
Query: 224 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
IHSY + N+ +E+L EIWTNG LTP+EA ++A LI+L +P LH+EE+
Sbjct: 189 IHSYKSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED 238
[201][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 112 bits (279), Expect = 2e-23
Identities = 52/110 (47%), Positives = 82/110 (74%), Gaps = 2/110 (1%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
E+ID QHIAT+T+ + L IELKIE++ GY + ++D ++ +DAVF P+ + N+SIH
Sbjct: 131 EVIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSVNYSIH 190
Query: 218 SYGNGNEK--QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ + ++ +E+L EIW+NGS+TP+EA+++ASR+ INLF+PFL E+E
Sbjct: 191 CFESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKE 240
[202][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 110 bits (276), Expect = 4e-23
Identities = 53/101 (52%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
EI+D+ Q IA LTEPID +EL IE++ G+ L+ + S+ IDA+FMP+ N N+SIH
Sbjct: 125 EILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIRNVNYSIH 184
Query: 218 SYGN-GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFI 99
G+ K E+L LEIWTNGS+TPKEA HQAS ++N+F+
Sbjct: 185 PVEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFL 225
[203][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 108 bits (269), Expect = 2e-22
Identities = 53/116 (45%), Positives = 81/116 (69%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+IID+TQHIA+LT+ I + LKIE+ + Y+++ +D +PID V +PV+N N SIH
Sbjct: 129 QIIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIH 188
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
SY + + QE+L EIWTNG LTP+E +++A +L++L IP L VE+ ++N+Q
Sbjct: 189 SYKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQN---IKNSQ 241
[204][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 107 bits (266), Expect = 5e-22
Identities = 52/103 (50%), Positives = 73/103 (70%)
Frame = -1
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIAT+T+PI +EL I + RGY ++ N+ +D +P+DA+F PV N N SIH N E
Sbjct: 137 HIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNFSIH---NLAE 193
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
+QE L LEIWTNG++TP +AL Q S NLI+LF+P +E++T+
Sbjct: 194 QQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDDTY 236
[205][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 99.0 bits (245), Expect = 1e-19
Identities = 43/106 (40%), Positives = 74/106 (69%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+I++ Q+IAT+ +PI+ +++ I++ +GYSLK + + + +D VF+P+ + N+SIH
Sbjct: 128 KIVNPDQYIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSVNYSIH 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
S+ + +E L +E+WTNGS+ PKEA+ +AS NL+NLF P + E
Sbjct: 188 SFEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQE 233
[206][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 97.4 bits (241), Expect = 4e-19
Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
Frame = -1
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
+D TQHIAT+T I I L++ER G+ + ++ S P DAVFMP+ +AN+SIH
Sbjct: 131 MDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFMPIRHANYSIHRL 190
Query: 212 GN--GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
G+ G +E+L LE T+GS TP+EA+++ASRNL NLF PF H
Sbjct: 191 GSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[207][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 95.5 bits (236), Expect = 2e-18
Identities = 41/60 (68%), Positives = 54/60 (90%)
Frame = -1
Query: 254 FMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
FMP+ NAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+L +LFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
[208][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 94.4 bits (233), Expect = 4e-18
Identities = 52/132 (39%), Positives = 78/132 (59%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
+++DNTQ+IA L P + I + +E + + + + +DA PV N N+SIH
Sbjct: 125 QVVDNTQYIARLEMPTSIEIHITLENTKTCTSLNTMPTTKGRFILDAALKPVRNMNYSIH 184
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
S G G+ +QE+L LE+WTNGSLTP+E + QAS+NL +L P L V E F + N H+
Sbjct: 185 SLGEGDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKV-ERYFQAKQNIHKKR 243
Query: 38 LPFFPFHNRLVN 3
+ F P + +N
Sbjct: 244 M-FTPTQSENLN 254
[209][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 90.5 bits (223), Expect = 5e-17
Identities = 45/103 (43%), Positives = 72/103 (69%)
Frame = -1
Query: 389 DNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYG 210
D +Q+IA +T I +E+++E++ GY + + + ID+VFMPV AN+S+HS+
Sbjct: 232 DPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFE 291
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+ +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 292 VEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334
[210][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 90.5 bits (223), Expect = 5e-17
Identities = 45/103 (43%), Positives = 72/103 (69%)
Frame = -1
Query: 389 DNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYG 210
D +Q+IA +T I +E+++E++ GY + + + ID+VFMPV AN+S+HS+
Sbjct: 319 DPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFE 378
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+ +EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 379 VEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421
[211][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 86.7 bits (213), Expect = 7e-16
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENANH 228
EII TQ++AT+ E L +E KIE+ RGY + K + N D PIDA+FMPV N+
Sbjct: 119 EIIHGTQYVATVAENAILEMEFKIEKGRGYKIIDKKQTENSID-FLPIDAIFMPVRKVNY 177
Query: 227 SIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ + +E +E L LEIW NGS+TP++++ QA+ L+NLF PF + E
Sbjct: 178 MVEEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPFKKINFE 229
[212][TOP]
>UniRef100_B9IJB3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IJB3_POPTR
Length = 73
Score = 86.3 bits (212), Expect = 1e-15
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = -1
Query: 365 LTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEKQEI 186
L EPIDL I L+IERN GY +K NF+D SY IDA+FM V NANH++HSYGNGNEK ++
Sbjct: 9 LKEPIDLHIGLEIERNHGYCMKPPKNFQDGSYSIDAIFMHVRNANHNVHSYGNGNEKSQL 68
[213][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 86.3 bits (212), Expect = 1e-15
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGY---SLKMSNNFEDRSYPIDAVFMPVENANH 228
+I+D TQHIA++T+PI L + LKIE+N G S+ + R P + +MPV + +
Sbjct: 132 QIVDGTQHIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPTEIFYMPVRSVTY 191
Query: 227 SIHSYGNGNEKQ--EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
+++ Y + + +IL E+WTNG LTPKEAL++A LI+L IP L V
Sbjct: 192 NVYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLLDV 241
[214][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 84.0 bits (206), Expect = 5e-15
Identities = 50/108 (46%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Frame = -1
Query: 392 IDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 213
+D Q IATL LCIEL I + L + + + IDA F PV+ AN SIHS
Sbjct: 138 VDPDQSIATLLNETQLCIELFIRQGIAKQLTRTKK-NHQGFFIDANFTPVQKANFSIHSV 196
Query: 212 GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF----IPFLHVE 81
G+ Q++L LEIWTN +LTP EAL+QA +L+NLF P LH E
Sbjct: 197 GDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[215][TOP]
>UniRef100_C5Z5P0 Putative uncharacterized protein Sb10g023655 (Fragment) n=1
Tax=Sorghum bicolor RepID=C5Z5P0_SORBI
Length = 66
Score = 82.8 bits (203), Expect = 1e-14
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = -1
Query: 182 FLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHNRLVN 3
FLEIWTNGSLTPKEAL++ SRNLI+LF+PF+H EEE E N++++T PF F R N
Sbjct: 7 FLEIWTNGSLTPKEALYETSRNLIDLFLPFIHTEEEGTNFEENKNRLTPPFLTFQKRFTN 66
[216][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 81.6 bits (200), Expect = 2e-14
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+I+ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+
Sbjct: 119 EVINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNY 178
Query: 227 SIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
S+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P + NQ
Sbjct: 179 SVESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL---------NQ 229
Query: 50 HQVTLPFFP 24
+ +P +P
Sbjct: 230 LETAVPEYP 238
[217][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 81.6 bits (200), Expect = 2e-14
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
EI+D Q++ATL E L +E ++E+ +GY + E S ID++FMPV N+
Sbjct: 119 EIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPVTKVNY 178
Query: 227 SIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
S+ + ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 179 SVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[218][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 81.6 bits (200), Expect = 2e-14
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
EI+D Q++ATL E L +E ++E+ +GY + E S ID++FMPV N+
Sbjct: 119 EIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPVTKVNY 178
Query: 227 SIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
S+ + ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 179 SVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[219][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 81.6 bits (200), Expect = 2e-14
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+I+ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+
Sbjct: 119 EVINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNY 178
Query: 227 SIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQ 51
S+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P + NQ
Sbjct: 179 SVESIRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNPLKDL---------NQ 229
Query: 50 HQVTLPFFP 24
+ +P +P
Sbjct: 230 LETAVPEYP 238
[220][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 81.3 bits (199), Expect = 3e-14
Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+ID Q+IATL E L +E ++ER GY + E+ S ID+VFMPV N+
Sbjct: 119 EVIDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKVNY 178
Query: 227 SIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
++ +G ++ L L+IWTNGS+ P+EAL +AS + NLFIP + E
Sbjct: 179 TVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229
[221][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 80.9 bits (198), Expect = 4e-14
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 4/113 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E++D Q+IATL+ L +E ++E+ GY N E + IDAVFMPV N+
Sbjct: 119 EVVDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPVRKVNY 178
Query: 227 SIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
++ G+ +++ L L+IWTNGSLTP+EAL QA+ L++LF+P + E+
Sbjct: 179 TVEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLKDITLES 231
[222][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 80.9 bits (198), Expect = 4e-14
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENANH 228
E++D Q+IAT++ + L +E +E +GY L + F+ PIDAVFMPV N+
Sbjct: 124 ELVDPDQYIATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFMPVTKVNY 183
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
++ G+ QE + +E+WTNGS+ ++A+ + +INLF P +V
Sbjct: 184 TVEENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSPLQNV 231
[223][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 80.5 bits (197), Expect = 5e-14
Identities = 51/117 (43%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSYPIDAVFMPVE 240
E+I+ HIATL E L +E I R RGY S M+ +F ID+VFMPV
Sbjct: 137 EVINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDF----LQIDSVFMPVR 192
Query: 239 NANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
N+++ + G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P V +T
Sbjct: 193 KVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSPLQEVSFDT 249
[224][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 80.1 bits (196), Expect = 7e-14
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E++D TQ+IATL + L +E +IE+ + Y N E + IDAVFMPV N+
Sbjct: 119 EVVDPTQYIATLADGAKLEMEFRIEKGKSYRAVQRNRDEATALDFLQIDAVFMPVTKVNY 178
Query: 227 SIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
S+ S + G+ ++ L LEIWTNGS+ P+EAL QA+ + LF P
Sbjct: 179 SVDSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNP 223
[225][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 80.1 bits (196), Expect = 7e-14
Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+++ TQ IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+
Sbjct: 119 EVVNPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSEEPAALDFLQIDAVFMPVTKVNY 178
Query: 227 SIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
S+ S G E ++ L LEIWTNGS PKEAL +A+ L++LF P
Sbjct: 179 SVESIRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[226][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 80.1 bits (196), Expect = 7e-14
Identities = 46/105 (43%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E++D TQ++ATLTE L +E +IE GY + S IDAVFMPV N+
Sbjct: 121 EVVDPTQYVATLTEGSKLEMEFRIETGTGYKGVERGKDDGTSLDFLEIDAVFMPVTKVNY 180
Query: 227 SIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ G E Q+ L LEIWTNGS PKEAL +A+ +++LF P
Sbjct: 181 IVEDIRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[227][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 79.7 bits (195), Expect = 9e-14
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+ID TQ++AT+ E L +E +IE+ +GY E S ID++FMPV N+
Sbjct: 119 EVIDPTQYVATIAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNY 178
Query: 227 SIH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
S+ S G G ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 179 SVEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[228][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 79.3 bits (194), Expect = 1e-13
Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+ID TQ++AT+ + L +E +IER +GY E S ID+VFMPV N+
Sbjct: 119 EVIDPTQYVATIADGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNY 178
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
S+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 179 SVEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 229
[229][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 79.3 bits (194), Expect = 1e-13
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+ID TQ++ATL E L +E +IE+ +GY E S ID+VFMPV N+
Sbjct: 119 EVIDQTQYVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNY 178
Query: 227 SIH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
S+ + G + ++ L LE+WTNGS++P+EAL A+ L+ LF P + E
Sbjct: 179 SVEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNPLKDISLE 230
[230][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 79.3 bits (194), Expect = 1e-13
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+ID TQ++AT+ E L +E +IER +GY E S ID++FMPV N+
Sbjct: 119 EVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNY 178
Query: 227 SIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
S+ +G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 179 SVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[231][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 79.3 bits (194), Expect = 1e-13
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+ID TQ++AT+ E L +E +IER +GY E S ID++FMPV N+
Sbjct: 119 EVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNY 178
Query: 227 SIHSY-GNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
S+ +G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 179 SVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[232][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 79.0 bits (193), Expect = 2e-13
Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
EI++ +IAT+T L IE KIE GY L F +S IDA+FMPV+ +
Sbjct: 119 EIVNPNHYIATITTSNVLEIEFKIESGTGYKLA-GQTFCKKSQDYLQIDAIFMPVQKVDF 177
Query: 227 SIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH--VEEETFYLEN 57
I + Y N N+ E LFL+IWTNGS++P+EA+ ASR +I+ F L + +ET EN
Sbjct: 178 KIENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLLENKLPQETKESEN 237
[233][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 78.6 bits (192), Expect = 2e-13
Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 4/110 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E +D Q+IATL + L +E +IER +GY E S +DAVFMPV N+
Sbjct: 119 EFVDPGQYIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVFMPVTKVNY 178
Query: 227 SIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
S+ +G+ +++ L L++WTNGS++P+EAL QA+ L++LF P +E
Sbjct: 179 SVEDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[234][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 78.6 bits (192), Expect = 2e-13
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
EI+D +Q++ATL E L +E +IE+ +GY + S ID+VFMPV N+
Sbjct: 119 EIVDPSQYVATLAEGSKLEMEFRIEKGKGYRAIERGKDDSTSLDFLQIDSVFMPVTKVNY 178
Query: 227 SIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
S+ +G ++ L +EIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 179 SVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[235][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENANH 228
++D Q+IAT++ L +ELK+E++ GY K+ F +S PID++FMPV+ N+
Sbjct: 124 VVDPCQYIATISGNDYLEMELKVEKSSGY--KLVETFSKKSPLDFLPIDSIFMPVKKVNY 181
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ + E L LE+WTNGSL+P+++++ AS NL+ LF P
Sbjct: 182 YVEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[236][TOP]
>UniRef100_Q8DML0 DNA-directed RNA polymerase subunit alpha n=1
Tax=Thermosynechococcus elongatus BP-1 RepID=RPOA_THEEB
Length = 321
Score = 77.8 bits (190), Expect = 3e-13
Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 13/122 (10%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENAN 231
E+++ +IATL L +E KIE++RGY + +DR +DAVFMPV N
Sbjct: 122 EVVNPNHYIATLMPGATLEMEFKIEKDRGYR-SVERVRDDRLALDYLQLDAVFMPVRRVN 180
Query: 230 HSIHSYGNGNEK-----QEILFLEIWTNGSLTPKEALHQASRNLINLFIPF----LHVEE 78
+++ S + + Q+ L LEIWTNGSLTP++AL+QA+ L++LF P LH E
Sbjct: 181 YTVDSVRSAGAEGDRQLQDYLKLEIWTNGSLTPQDALNQAATILVDLFSPLKEVPLHTSE 240
Query: 77 ET 72
T
Sbjct: 241 AT 242
[237][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 77.4 bits (189), Expect = 5e-13
Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS--YPIDAVFMPVENANHS 225
++ID Q+IAT+ L +E KIE GY + +N + +D+VFMPV+ N
Sbjct: 119 KLIDPEQYIATICGNNTLEMEFKIEVGSGYKIVEKDNSTEHFEFLQVDSVFMPVKKVNFR 178
Query: 224 IH-SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV--EEETFYLENN 54
I + G N E L L+IWTNGS++ KEA+ A+ NLINLF P + E ET Y N
Sbjct: 179 IEETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDGESETDYETNE 238
Query: 53 QHQV 42
+
Sbjct: 239 TSHI 242
[238][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 77.0 bits (188), Expect = 6e-13
Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E++D +Q++ATL++ L +E ++E+ +GY + S ID+VFMPV N+
Sbjct: 119 EVVDPSQYVATLSDGSKLEMEFRVEKGKGYRAIERGKDDTTSLDFLQIDSVFMPVTKVNY 178
Query: 227 SIHSYG-NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
S+ +G ++ L LEIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 179 SVEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNE 229
[239][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 77.0 bits (188), Expect = 6e-13
Identities = 47/126 (37%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFMPVENANHS 225
+I++ +IAT++ I+L +E KIE GY L ++ N+ ID++FMPV+ N
Sbjct: 119 KIVNPNHYIATISTSINLELEFKIEHGIGYKLASQLFNDENKNFLQIDSIFMPVQKVNFK 178
Query: 224 IHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYLENN 54
I + Y N E L LEIWTNGS+ P EAL +A + +IN F L + +ET +N
Sbjct: 179 IENLYDADNSISERLILEIWTNGSIEPIEALKKACKIIINCFNSLLKTQNTKETTKKTSN 238
Query: 53 QHQVTL 36
++T+
Sbjct: 239 NRKLTI 244
[240][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 76.6 bits (187), Expect = 8e-13
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+I+ +IATL+ L +E KIE+ +GY E S IDA+FMPV N+
Sbjct: 118 EVINLDHYIATLSADATLEMEFKIEQGKGYRAIERGKDESASLDFLQIDAIFMPVRKVNY 177
Query: 227 SIHSYGNGN-EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
++ +G +++ L LEIWTNGSLTP+EAL+Q + L++LF P V
Sbjct: 178 TVEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLKDV 226
[241][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 76.3 bits (186), Expect = 1e-12
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANH 228
E++D Q+IATL+ +L +E I +GY + + N S P+DA+FMP+ N+
Sbjct: 124 EVVDGGQYIATLSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDAIFMPIHKVNY 183
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ E + LEIWTNGS++P++AL + +I+LF P H E
Sbjct: 184 MVEQDHTSKFLTERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSSE 234
[242][TOP]
>UniRef100_Q85FU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidioschyzon
merolae RepID=RPOA_CYAME
Length = 316
Score = 76.3 bits (186), Expect = 1e-12
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIH- 219
IID Q+IAT+ L +E ++E++ GY L + D PID VFMPV+ N +
Sbjct: 129 IIDTCQYIATIDTQDILEMECQLEQSSGYRLAKPSEMIDW-LPIDGVFMPVKRVNFWVDK 187
Query: 218 SYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 39
+ + + L LEIWTNGS++P+EALHQA+R L + F P +E +T + +N Q
Sbjct: 188 ALVDKVLVDKALHLEIWTNGSISPQEALHQAARILTHWFNPLQTLEWKTSHTKNEQTMAQ 247
Query: 38 L 36
L
Sbjct: 248 L 248
[243][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 75.9 bits (185), Expect = 1e-12
Identities = 46/130 (35%), Positives = 75/130 (57%), Gaps = 9/130 (6%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
EI++ TQ++ATL+ L +E +IE+ +GY N E + IDA++MPV N+
Sbjct: 119 EIVNPTQYVATLSSDATLEMEFRIEQGKGYHAVGKNRDEAAALDFLEIDAIYMPVRRVNY 178
Query: 227 SIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIP-----FLHVEEETFY 66
+ G +++ L L+IWTNG+LTP+E+L QA+ L++LF P F VE+
Sbjct: 179 EVEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDATFNVVEDIELE 238
Query: 65 LENNQHQVTL 36
E+ +Q+ +
Sbjct: 239 EEDETNQIPI 248
[244][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 75.5 bits (184), Expect = 2e-12
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 8/113 (7%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSYPIDAVFMPVE 240
E+I+ HIATL E L +E I R GY S M+ +F ID+VFMPV
Sbjct: 139 EVINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDF----LQIDSVFMPVR 194
Query: 239 NANHSIHSYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
N+++ + G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P V
Sbjct: 195 KVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAPLQEV 247
[245][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 74.7 bits (182), Expect = 3e-12
Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANH 228
EII+ +IAT++ L IE K ER GY L F D+S IDA+FMP++ +
Sbjct: 121 EIINPNHYIATISTSNVLEIEFKFERGTGYKLA-GQTFCDKSEDFLQIDAIFMPIQKVDF 179
Query: 227 SIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
I + Y N N E LFL+IWTNGS++P +A+ AS+ +I F
Sbjct: 180 KIENVYDNSNSITERLFLDIWTNGSISPDDAISYASKFIIEFF 222
[246][TOP]
>UniRef100_Q6J227 RNA polymerase alpha subunit (Fragment) n=1 Tax=Corethron hystrix
RepID=Q6J227_9STRA
Length = 301
Score = 73.6 bits (179), Expect = 7e-12
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS--YPIDAVFMPVENANHS 225
EI++ Q+IAT++ + L +E K E GY L E S IDAVFMPV+ +
Sbjct: 122 EILNPNQYIATISRSMILEMEFKFESGIGYRLVNQTKMESSSDFLEIDAVFMPVQKVDFK 181
Query: 224 IHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
+ + Y E L ++IWTNGS++P+ AL+++S N+I LF
Sbjct: 182 VENIYDKNKHISENLIIDIWTNGSISPETALYESSNNIIELF 223
[247][TOP]
>UniRef100_B5YDX0 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Dictyoglomus
thermophilum H-6-12 RepID=B5YDX0_DICT6
Length = 324
Score = 72.8 bits (177), Expect = 1e-11
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPI-----DAVFMPVENA 234
+I++ IATL E + +E+++++ +GY N +D++YPI D++F PV+
Sbjct: 116 KIVNPDLVIATLVEDMPFHMEVEVKKGKGYVSAEEN--KDQNYPIGVLVLDSIFSPVKKV 173
Query: 233 NHSIHSYGNGNEKQ-EILFLEIWTNGSLTPKEALHQASRNLINLF---------IPFLHV 84
++++ G + L LEIWTNGS++P+EA +ASR L+ F +P+ V
Sbjct: 174 SYTVEKTRVGRRTDLDRLILEIWTNGSISPEEAFREASRILMEYFRLLNEKEFQLPYEEV 233
Query: 83 EEETFYLENNQHQVTLPFFPFHNRLVN 3
+ E YLE + +TL R N
Sbjct: 234 KPENTYLEEEKKGLTLEDLGLSTRAYN 260
[248][TOP]
>UniRef100_A0T0K0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaeodactylum
tricornutum RepID=RPOA_PHATR
Length = 311
Score = 72.8 bits (177), Expect = 1e-11
Identities = 45/103 (43%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSY-PIDAVFMPVENANH 228
EII+ +IAT++ L IE K E GY L S NF ED +Y +D +FMPV+ +
Sbjct: 119 EIINPNHYIATISTSNILEIEFKFEYGSGYHLA-SQNFVEEDENYLQLDTIFMPVQKVDF 177
Query: 227 SIHS-YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
I + Y N E LFL+IWTNGS++P +AL A++ +I+LF
Sbjct: 178 KIENIYDATNNISERLFLDIWTNGSISPNDALESAAQVIIDLF 220
[249][TOP]
>UniRef100_Q6B8X4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gracilaria
tenuistipitata var. liui RepID=RPOA_GRATL
Length = 314
Score = 72.4 bits (176), Expect = 1e-11
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 10/127 (7%)
Frame = -1
Query: 395 IIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHS 225
IID Q+IAT+ +E +IE+ GY L ++ F+ +S IDAVFMPV N++
Sbjct: 120 IIDPQQYIATICNNTIFEMEFRIEKGSGYKL-VNKGFDKKSIDFLQIDAVFMPVTKFNYT 178
Query: 224 IHSYGNGNEK-------QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY 66
+ EK QE LFLE+WTNGSL+P+EA+ + ++ L +LF P ++ +
Sbjct: 179 VE------EKKISPILIQEKLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLTNLNFQNAN 232
Query: 65 LENNQHQ 45
+N+++
Sbjct: 233 NTDNEYE 239
[250][TOP]
>UniRef100_Q31L30 DNA-directed RNA polymerase subunit alpha n=2 Tax=Synechococcus
elongatus RepID=RPOA_SYNE7
Length = 309
Score = 72.0 bits (175), Expect = 2e-11
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Frame = -1
Query: 398 EIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANH 228
E+I+ +IA+L+E L +ELK+E GY ++ E + +DAVFMPV N+
Sbjct: 118 EVINPNHYIASLSEGATLEMELKVEWGTGYRAIDRSHDETTALDFLQLDAVFMPVRRVNY 177
Query: 227 SIHSYGNGNEKQ-EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
S+ G + L LE+WTNGSL+P+EAL QA+ L+ LF P +V
Sbjct: 178 SVEDARVGESTAIDRLVLEVWTNGSLSPQEALSQAASCLVALFEPLKNV 226