[UP]
[1][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 267 bits (682), Expect = 5e-70
Identities = 137/137 (100%), Positives = 137/137 (100%)
Frame = -2
Query: 563 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 384
KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE
Sbjct: 436 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 495
Query: 383 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 204
FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL
Sbjct: 496 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 555
Query: 203 KNKKRNNHLQQYLVAQS 153
KNKKRNNHLQQYLVAQS
Sbjct: 556 KNKKRNNHLQQYLVAQS 572
[2][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 265 bits (678), Expect = 1e-69
Identities = 136/137 (99%), Positives = 137/137 (100%)
Frame = -2
Query: 563 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 384
KNEEIAEATGLSMKRLMAVLLSPKPPRSLD+KIGMNQNLKPSEVIADPEAVTSEDILIKE
Sbjct: 438 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKE 497
Query: 383 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 204
FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL
Sbjct: 498 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 557
Query: 203 KNKKRNNHLQQYLVAQS 153
KNKKRNNHLQQYLVAQS
Sbjct: 558 KNKKRNNHLQQYLVAQS 574
[3][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 265 bits (677), Expect = 2e-69
Identities = 136/137 (99%), Positives = 136/137 (99%)
Frame = -2
Query: 563 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 384
KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVT EDILIKE
Sbjct: 436 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKE 495
Query: 383 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 204
FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL
Sbjct: 496 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 555
Query: 203 KNKKRNNHLQQYLVAQS 153
KNKKRNNHLQQYLVAQS
Sbjct: 556 KNKKRNNHLQQYLVAQS 572
[4][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 248 bits (632), Expect = 3e-64
Identities = 125/137 (91%), Positives = 133/137 (97%)
Frame = -2
Query: 563 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 384
KNEE+AEATGLSMKRLMAVLLSPKPPRSLDQKIG+N NLKPSEVIADPEA TSEDIL+K+
Sbjct: 436 KNEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQ 495
Query: 383 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 204
FMRQDLDKVLDSL TREKQVIRWRFGMEDGRMKTLQEIGE MGVSRERVRQI++SAFRKL
Sbjct: 496 FMRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQIDTSAFRKL 555
Query: 203 KNKKRNNHLQQYLVAQS 153
KNKKRN+HLQQYLVAQ+
Sbjct: 556 KNKKRNSHLQQYLVAQT 572
[5][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 220 bits (561), Expect = 5e-56
Identities = 108/134 (80%), Positives = 125/134 (93%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEE+AEATGLSMKRL AVLL+PK PRSLDQKIG+NQNLKPSEVIADP+A T+E++LIK+F
Sbjct: 445 NEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQF 504
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
MR+DL+KVL+SL REKQVIRWR+G+EDGR KTLQEIGE+MGVSRER+RQIES AFRKLK
Sbjct: 505 MREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLK 564
Query: 200 NKKRNNHLQQYLVA 159
NK+R HLQQYLV+
Sbjct: 565 NKRRTKHLQQYLVS 578
[6][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 220 bits (561), Expect = 5e-56
Identities = 108/134 (80%), Positives = 125/134 (93%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEE+AEATGLSMKRL AVLL+PK PRSLDQKIG+NQNLKPSEVIADP+A T+E++LIK+F
Sbjct: 102 NEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQF 161
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
MR+DL+KVL+SL REKQVIRWR+G+EDGR KTLQEIGE+MGVSRER+RQIES AFRKLK
Sbjct: 162 MREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLK 221
Query: 200 NKKRNNHLQQYLVA 159
NK+R HLQQYLV+
Sbjct: 222 NKRRTKHLQQYLVS 235
[7][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 218 bits (556), Expect = 2e-55
Identities = 107/132 (81%), Positives = 123/132 (93%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEE+AEATGLSMKRL AVL++PK PRSLDQKIG N NLKPSEVIADPEA T+ED+L K+F
Sbjct: 442 NEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQF 501
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
MRQDL+KVLD+L +REKQVIRWRFG+EDGRMKTLQEIGE+MGVSRER+RQIESSAFRKL+
Sbjct: 502 MRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLQ 561
Query: 200 NKKRNNHLQQYL 165
NKK+ +LQQY+
Sbjct: 562 NKKKTINLQQYM 573
[8][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 212 bits (540), Expect = 1e-53
Identities = 104/134 (77%), Positives = 123/134 (91%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+AEA GLSMKRL AVLL+PK PRSLDQKIGMN +LKPSEVIADPEA T+E++L+K+F
Sbjct: 436 DEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQF 495
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M+QDL+KVL++L RE QV+RWRFG+EDGRMKTLQEIGE+MGVSRER+RQIESSAFRKLK
Sbjct: 496 MKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLK 555
Query: 200 NKKRNNHLQQYLVA 159
NKKR L+QYL+A
Sbjct: 556 NKKRTKQLKQYLLA 569
[9][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 203 bits (517), Expect = 6e-51
Identities = 101/134 (75%), Positives = 119/134 (88%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
++E+AEATGLSMKRL AVLL+PK PRSLDQK+G N +LK SEV ADPEA T+ED+L+KEF
Sbjct: 431 DKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEF 490
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++DL++VL+SL RE QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIE SAFRKLK
Sbjct: 491 MKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLK 550
Query: 200 NKKRNNHLQQYLVA 159
NK R L+QYLV+
Sbjct: 551 NKNRTKQLRQYLVS 564
[10][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 200 bits (509), Expect = 5e-50
Identities = 101/134 (75%), Positives = 116/134 (86%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
++E+AEA GLSMKRL AVLL+PK PRSLDQK+G N +LK SEV ADPEA T+ED+L+KEF
Sbjct: 434 DKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEF 493
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++DL KVL SL RE QV+RWRFGMEDGRMKTLQEIGE+MGVSRERVRQIE SAFRKLK
Sbjct: 494 MKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRKLK 553
Query: 200 NKKRNNHLQQYLVA 159
NK R L+QY+VA
Sbjct: 554 NKNRTKQLRQYMVA 567
[11][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 141 bits (356), Expect = 3e-32
Identities = 76/133 (57%), Positives = 101/133 (75%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG+ +KR+ A + PK SLD KIG + ++ EV ADP A T+E++L +
Sbjct: 428 NEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLS 486
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D+ K LD+L TRE+QV+ RFG+EDGR++TLQEIG MGVSRER+RQIES+AFRKL+
Sbjct: 487 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLR 546
Query: 200 NKKRNNHLQQYLV 162
+KKR N L+ YLV
Sbjct: 547 SKKRVNALKDYLV 559
[12][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 141 bits (356), Expect = 3e-32
Identities = 76/133 (57%), Positives = 101/133 (75%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG+ +KR+ A + PK SLD KIG + ++ EV ADP A T+E++L +
Sbjct: 428 NEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLS 486
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D+ K LD+L TRE+QV+ RFG+EDGR++TLQEIG MGVSRER+RQIES+AFRKL+
Sbjct: 487 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLR 546
Query: 200 NKKRNNHLQQYLV 162
+KKR N L+ YLV
Sbjct: 547 SKKRVNALKDYLV 559
[13][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 141 bits (356), Expect = 3e-32
Identities = 76/133 (57%), Positives = 101/133 (75%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG+ +KR+ A + PK SLD KIG + ++ EV ADP A T+E++L +
Sbjct: 428 NEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLS 486
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D+ K LD+L TRE+QV+ RFG+EDGR++TLQEIG MGVSRER+RQIES+AFRKL+
Sbjct: 487 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLR 546
Query: 200 NKKRNNHLQQYLV 162
+KKR N L+ YLV
Sbjct: 547 SKKRVNALKDYLV 559
[14][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 141 bits (356), Expect = 3e-32
Identities = 76/133 (57%), Positives = 101/133 (75%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG+ +KR+ A + PK SLD KIG + ++ EV ADP A T+E++L +
Sbjct: 427 NEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLS 485
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D+ K LD+L TRE+QV+ RFG+EDGR++TLQEIG MGVSRER+RQIES+AFRKL+
Sbjct: 486 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLR 545
Query: 200 NKKRNNHLQQYLV 162
+KKR N L+ YLV
Sbjct: 546 SKKRVNALKDYLV 558
[15][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
bicolor RepID=C6JRK5_SORBI
Length = 238
Score = 137 bits (345), Expect = 6e-31
Identities = 75/133 (56%), Positives = 99/133 (74%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG+ +KR+ A + PK SLD KIG + ++ EV ADP A T+E++L +
Sbjct: 102 NEEIALDTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMS 160
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D+ K LD+L TREKQV+ RFG+ED R++TLQEIG +MGVSRER+RQIES AFRKL+
Sbjct: 161 MKKDVHKALDTLTTREKQVVVLRFGLEDDRIRTLQEIGNIMGVSRERIRQIESGAFRKLR 220
Query: 200 NKKRNNHLQQYLV 162
+KKR L+ YLV
Sbjct: 221 SKKRVKALKDYLV 233
[16][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 137 bits (344), Expect = 7e-31
Identities = 74/133 (55%), Positives = 99/133 (74%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG+ +KR+ A + PK SLD KIG + ++ EV ADP A T+E++L +
Sbjct: 403 NEEIAVDTGIPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMS 461
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D+ LD+L TREKQV+ RFG+EDGR++TLQEIG +MGVSRER+RQIES AFRKL+
Sbjct: 462 MKKDVHMALDTLTTREKQVVVLRFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLR 521
Query: 200 NKKRNNHLQQYLV 162
+KK+ L+ YLV
Sbjct: 522 SKKKVKALKDYLV 534
[17][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 134 bits (336), Expect = 6e-30
Identities = 66/131 (50%), Positives = 92/131 (70%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EE+AE G+SM RL V + P SLD+ +G + + K SE++AD + ++E I+ KE
Sbjct: 363 EEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELF 422
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++DLD+VLD+L REKQV+R R+G++DGRMK+L E+GE +SRERVRQIE A RKL+
Sbjct: 423 KKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQ 482
Query: 197 KKRNNHLQQYL 165
R HL+ YL
Sbjct: 483 NHRTQHLKHYL 493
[18][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 134 bits (336), Expect = 6e-30
Identities = 66/131 (50%), Positives = 92/131 (70%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EE+AE G+SM RL V + P SLD+ +G + + K SE++AD + ++E I+ KE
Sbjct: 460 EEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELF 519
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++DLD+VLD+L REKQV+R R+G++DGRMK+L E+GE +SRERVRQIE A RKL+
Sbjct: 520 KKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQ 579
Query: 197 KKRNNHLQQYL 165
R HL+ YL
Sbjct: 580 NHRTQHLKHYL 590
[19][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 131 bits (330), Expect = 3e-29
Identities = 62/137 (45%), Positives = 101/137 (73%)
Frame = -2
Query: 563 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 384
+NEE+AE GL++++L +V+ S K P S+++ IG + + E++AD + + ED ++K+
Sbjct: 440 RNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQ 499
Query: 383 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 204
MRQD++ VL +L RE++V+R RFG++DGR KTL+EIG++ V+RER+RQIE+ A RKL
Sbjct: 500 LMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKL 559
Query: 203 KNKKRNNHLQQYLVAQS 153
+ RN+ L++YL +S
Sbjct: 560 RQPSRNSILREYLDVKS 576
[20][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 127 bits (319), Expect = 6e-28
Identities = 64/132 (48%), Positives = 92/132 (69%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG+ ++R+ A + PK SL K+G ++ E+ D T+E++L +
Sbjct: 404 NEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWL 462
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D+D+ LD L RE+QVIR+RFGM+DGR++TL +IG +MGVSRER+RQIE AFRKL+
Sbjct: 463 MKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLR 522
Query: 200 NKKRNNHLQQYL 165
+K+ LQ YL
Sbjct: 523 GRKKVQSLQHYL 534
[21][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 127 bits (319), Expect = 6e-28
Identities = 64/132 (48%), Positives = 92/132 (69%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG+ ++R+ A + PK SL K+G ++ E+ D T+E++L +
Sbjct: 207 NEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWL 265
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D+D+ LD L RE+QVIR+RFGM+DGR++TL +IG +MGVSRER+RQIE AFRKL+
Sbjct: 266 MKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLR 325
Query: 200 NKKRNNHLQQYL 165
+K+ LQ YL
Sbjct: 326 GRKKVQSLQHYL 337
[22][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 127 bits (319), Expect = 6e-28
Identities = 64/132 (48%), Positives = 92/132 (69%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG+ ++R+ A + PK SL K+G ++ E+ D T+E++L +
Sbjct: 361 NEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWL 419
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D+D+ LD L RE+QVIR+RFGM+DGR++TL +IG +MGVSRER+RQIE AFRKL+
Sbjct: 420 MKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLR 479
Query: 200 NKKRNNHLQQYL 165
+K+ LQ YL
Sbjct: 480 GRKKVQSLQHYL 491
[23][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 127 bits (319), Expect = 6e-28
Identities = 64/132 (48%), Positives = 92/132 (69%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG+ ++R+ A + PK SL K+G ++ E+ D T+E++L +
Sbjct: 404 NEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWL 462
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D+D+ LD L RE+QVIR+RFGM+DGR++TL +IG +MGVSRER+RQIE AFRKL+
Sbjct: 463 MKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLR 522
Query: 200 NKKRNNHLQQYL 165
+K+ LQ YL
Sbjct: 523 GRKKVQSLQHYL 534
[24][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 124 bits (311), Expect = 5e-27
Identities = 59/133 (44%), Positives = 96/133 (72%)
Frame = -2
Query: 563 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 384
++EE+AE G+S+++L ++ S K P S+D+ IG ++ E+IAD + + ED LI++
Sbjct: 454 RDEEVAELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQ 513
Query: 383 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 204
++QD+D VL +L RE++V+R RFG++DG+ +TL+EIG + V+RER+RQIE+ A RKL
Sbjct: 514 VLKQDVDGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKL 573
Query: 203 KNKKRNNHLQQYL 165
+ RN L++YL
Sbjct: 574 RQPSRNGVLREYL 586
[25][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 121 bits (303), Expect = 4e-26
Identities = 63/132 (47%), Positives = 92/132 (69%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG++++R+ A + PK S K+G ++ E++ D A T+E+ L +
Sbjct: 391 NEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTSAETAEETLHRWL 449
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D++ LDSL R+KQV+R+RFG+E GR +TL +IG++MGVSRER+RQIE AFRKL+
Sbjct: 450 MKKDVNTALDSLSPRKKQVMRYRFGIEGGRARTLHDIGQLMGVSRERIRQIELGAFRKLR 509
Query: 200 NKKRNNHLQQYL 165
+K R LQ YL
Sbjct: 510 SKNRLQSLQHYL 521
[26][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 121 bits (303), Expect = 4e-26
Identities = 63/132 (47%), Positives = 93/132 (70%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEEIA TG++++R+ A + PK S K+G ++ E++ D A T+E++L +
Sbjct: 392 NEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTSAETAEEVLHRWL 450
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
M++D++ L+SL REK V+R+RFG+E GR +TL +IG++MGVSRER+RQIE AFRKL+
Sbjct: 451 MKKDVNTALESLSPREKLVMRYRFGIEGGRPRTLHDIGQIMGVSRERIRQIELGAFRKLR 510
Query: 200 NKKRNNHLQQYL 165
+KKR LQ YL
Sbjct: 511 SKKRVQSLQHYL 522
[27][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 113 bits (283), Expect = 9e-24
Identities = 57/131 (43%), Positives = 92/131 (70%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 259 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 317
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+KVLDSL RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 318 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 377
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 378 PNRNSVLKEYI 388
[28][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 113 bits (283), Expect = 9e-24
Identities = 57/131 (43%), Positives = 92/131 (70%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 319
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+KVLDSL RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 320 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 379
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 380 PNRNSVLKEYI 390
[29][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 113 bits (283), Expect = 9e-24
Identities = 57/131 (43%), Positives = 92/131 (70%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 318
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+KVLDSL RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 319 REDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 378
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 379 PNRNSVLKEYI 389
[30][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 113 bits (282), Expect = 1e-23
Identities = 56/131 (42%), Positives = 92/131 (70%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 245 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKSLL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 304 REDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 364 PNRNSILKEYI 374
[31][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 112 bits (281), Expect = 1e-23
Identities = 56/131 (42%), Positives = 92/131 (70%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 295 EEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 353
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 354 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 413
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 414 PNRNSILKEYI 424
[32][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 111 bits (278), Expect = 3e-23
Identities = 55/131 (41%), Positives = 92/131 (70%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 250 EEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKNLL 308
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 309 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 368
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 369 PNRNSILKEYI 379
[33][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 92/131 (70%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA + +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 256 EEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKNLL 314
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL+SL RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 315 REDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 374
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 375 PNRNSILKEYI 385
[34][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 246 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 304
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 305 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 364
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 365 PNRNSILKEYI 375
[35][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 286 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 405 PNRNSILKEYI 415
[36][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 286 EEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 405 PNRNSILKEYI 415
[37][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 284 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 342
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 343 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 402
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 403 PNRNSILKEYI 413
[38][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 257 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 315
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 316 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 375
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 376 PNRNSILKEYI 386
[39][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 247 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 305
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 306 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 365
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 366 PNRNSILKEYI 376
[40][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 286 EEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 405 PNRNSILKEYI 415
[41][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 286 EEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 405 PNRNSILKEYI 415
[42][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 286 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 405 PNRNSILKEYI 415
[43][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 319
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 320 REDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 379
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 380 PNRNSILKEYI 390
[44][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 110 bits (275), Expect = 7e-23
Identities = 55/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 286 EEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLL 344
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 405 PNRNSILKEYI 415
[45][TOP]
>UniRef100_C3XG51 RNA polymerase sigma factor n=1 Tax=Helicobacter bilis ATCC 43879
RepID=C3XG51_9HELI
Length = 632
Score = 109 bits (273), Expect = 1e-22
Identities = 60/132 (45%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
E IA GLS+ ++ V+ K P SL+ IG + + K + + D ++S DI++KE +
Sbjct: 499 ESIANQVGLSVDKVKNVIKITKEPISLEAPIGNDDDGKFGDFVEDKSTMSSMDIMLKEDL 558
Query: 377 RQDLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
R+ +D VLD L REK VI+ RFG +ED +TL+EIG+ + V+RERVRQIESSA +KLK
Sbjct: 559 REQIDNVLDQLNEREKAVIKMRFGLLEDESDRTLEEIGKALNVTRERVRQIESSAIKKLK 618
Query: 200 NKKRNNHLQQYL 165
+ + L+QYL
Sbjct: 619 HPRIGRQLRQYL 630
[46][TOP]
>UniRef100_A9RG56 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RG56_PHYPA
Length = 581
Score = 109 bits (272), Expect = 2e-22
Identities = 55/133 (41%), Positives = 91/133 (68%)
Frame = -2
Query: 563 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 384
++EE+A A G+S+++L +L S + P S+DQ IG +++L E++AD +++D L E
Sbjct: 445 RDEEVATAVGISVEKLDFILKSARLPASMDQLIGRDKDLPLWEMVADKGFNSADDFLTNE 504
Query: 383 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 204
++QD+D VL +L E++V+R RFG++D + TL++IG V+RER+RQIE A RKL
Sbjct: 505 VLKQDIDGVLQTLSPTEREVLRLRFGLDDAQSMTLKDIGIFFKVTRERIRQIEVRALRKL 564
Query: 203 KNKKRNNHLQQYL 165
++ R N LQ ++
Sbjct: 565 RHPTRRNILQGHV 577
[47][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 108 bits (271), Expect = 2e-22
Identities = 54/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 270 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDKVAKNLL 328
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL++L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 329 REDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 388
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 389 PNRNSVLKEYI 399
[48][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 108 bits (271), Expect = 2e-22
Identities = 54/131 (41%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 241 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLL 299
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V++ R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 300 REDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 359
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 360 PNRNSVLKEYI 370
[49][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 108 bits (270), Expect = 3e-22
Identities = 54/131 (41%), Positives = 90/131 (68%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + ED + K +
Sbjct: 249 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGENPEDEVSKNLL 307
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VLD+L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 308 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 367
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 368 PNRNSILKEYI 378
[50][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 108 bits (269), Expect = 4e-22
Identities = 54/131 (41%), Positives = 90/131 (68%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLL 327
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 328 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 387
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 388 PNRNSILKEYI 398
[51][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 108 bits (269), Expect = 4e-22
Identities = 53/131 (40%), Positives = 87/131 (66%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+AE +G+ +++ +L + P SLD +G ++ + I D EA+++E+ +I E
Sbjct: 187 DEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISEL 246
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE+QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 247 LHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLR 306
Query: 200 NKKRNNHLQQY 168
N +R + L+ Y
Sbjct: 307 NGERADRLRSY 317
[52][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
MC2 155 RepID=A0QVZ5_MYCS2
Length = 319
Score = 108 bits (269), Expect = 4e-22
Identities = 53/131 (40%), Positives = 88/131 (67%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+AE +G+ ++++ +L + P SLD +G ++ + I D EA+++E+ +I E
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISEL 246
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE+QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 247 LHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLR 306
Query: 200 NKKRNNHLQQY 168
N +R + L+ Y
Sbjct: 307 NGERADRLRSY 317
[53][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 108 bits (269), Expect = 4e-22
Identities = 54/131 (41%), Positives = 90/131 (68%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 274 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLL 332
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 333 REDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 392
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 393 PNRNSVLKEYI 403
[54][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 108 bits (269), Expect = 4e-22
Identities = 54/131 (41%), Positives = 90/131 (68%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLL 327
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 328 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 387
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 388 PNRNSILKEYI 398
[55][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
RepID=A4TCQ2_MYCGI
Length = 329
Score = 107 bits (267), Expect = 6e-22
Identities = 53/131 (40%), Positives = 87/131 (66%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+AE +G+ ++++ +L + P SLD +G ++ + I D EA+++E+ +I E
Sbjct: 197 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISEL 256
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE+QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 257 LHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLR 316
Query: 200 NKKRNNHLQQY 168
N R + L+ Y
Sbjct: 317 NGDRADRLRSY 327
[56][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 107 bits (267), Expect = 6e-22
Identities = 53/131 (40%), Positives = 86/131 (65%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA LS++++ ++ + P SL+ IG + + I D EA+T D E +
Sbjct: 246 EEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELL 305
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 306 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 365
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 366 PSRSKRLKDFL 376
[57][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 107 bits (266), Expect = 8e-22
Identities = 53/131 (40%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 288 EEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKHLL 346
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V++ R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 347 REDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 406
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 407 PNRNSVLKEYI 417
[58][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 107 bits (266), Expect = 8e-22
Identities = 53/131 (40%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 273 EEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDRVAKVLL 331
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL++L RE+ V++ R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 332 REDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 391
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 392 PNRNSVLKEYI 402
[59][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 107 bits (266), Expect = 8e-22
Identities = 53/133 (39%), Positives = 90/133 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE +S+++L +VL S +P SL++ + + + + + + E+ + K +
Sbjct: 311 EEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSML 370
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R DL+ V++SL RE+ V+R R+G++DGR+KTL+EIG++ V+RERVRQIE+ A RKL+
Sbjct: 371 RDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430
Query: 197 KKRNNHLQQYLVA 159
R++ L+ Y++A
Sbjct: 431 PYRSSILRDYVLA 443
[60][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 107 bits (266), Expect = 8e-22
Identities = 53/133 (39%), Positives = 90/133 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE +S+++L +VL S +P SL++ + + + + + + E+ + K +
Sbjct: 311 EEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSML 370
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R DL+ V++SL RE+ V+R R+G++DGR+KTL+EIG++ V+RERVRQIE+ A RKL+
Sbjct: 371 RDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430
Query: 197 KKRNNHLQQYLVA 159
R++ L+ Y++A
Sbjct: 431 PYRSSILRDYVLA 443
[61][TOP]
>UniRef100_A9NGS4 RNA polymerase sigma factor n=1 Tax=Acholeplasma laidlawii PG-8A
RepID=A9NGS4_ACHLI
Length = 419
Score = 106 bits (265), Expect = 1e-21
Identities = 49/134 (36%), Positives = 90/134 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE ++ +++ + K P SL+ +G ++ + I+DP A+ D +++E +
Sbjct: 285 EEIAEKMDITPEKVQNIQRIAKEPISLEAPVGEEEDSSLGDFISDPNALNPHDYMMQEMV 344
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ LD+VL++L RE++V+R R+G+ DG+ TL+E+G GV+RER+RQIE+ A RKL++
Sbjct: 345 KKTLDEVLETLTDREEKVLRLRYGLLDGKTHTLEEVGREFGVTRERIRQIEAKALRKLRS 404
Query: 197 KKRNNHLQQYLVAQ 156
+R N L+++ + +
Sbjct: 405 PQRQNKLKEFYITR 418
[62][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 106 bits (264), Expect = 1e-21
Identities = 53/131 (40%), Positives = 91/131 (69%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + E T E+ + K +
Sbjct: 274 EEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESEGETPEERVAKVLL 332
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL++L RE+ V++ R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 333 REDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 392
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 393 PNRNSVLKEYI 403
[63][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
RepID=A1T7W4_MYCVP
Length = 329
Score = 106 bits (264), Expect = 1e-21
Identities = 52/131 (39%), Positives = 87/131 (66%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+A +G+ ++++ +L + P SLD +G ++ + I D EA+++E+ +I E
Sbjct: 197 DEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISEL 256
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE+QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 257 LHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLR 316
Query: 200 NKKRNNHLQQY 168
N +R + L+ Y
Sbjct: 317 NGERADRLRSY 327
[64][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 105 bits (263), Expect = 2e-21
Identities = 53/131 (40%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 242 EEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[65][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 105 bits (263), Expect = 2e-21
Identities = 53/131 (40%), Positives = 90/131 (68%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA +++++L + S + P SL+ IG ++ + + I + + T ED + K +
Sbjct: 248 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLL 306
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V++ R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 307 REDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 366
Query: 197 KKRNNHLQQYL 165
RN+ L++Y+
Sbjct: 367 PNRNSVLKEYI 377
[66][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 105 bits (263), Expect = 2e-21
Identities = 53/131 (40%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 242 EEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[67][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 105 bits (263), Expect = 2e-21
Identities = 53/131 (40%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 242 EEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[68][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 105 bits (263), Expect = 2e-21
Identities = 52/131 (39%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA LS++++ ++ + P SL+ IG + + I D EA+ D E +
Sbjct: 243 EEIAAEMDLSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELL 302
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 362
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 363 PSRSKRLKDFL 373
[69][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 105 bits (263), Expect = 2e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE ++++++ + + P SL Q + + + E + D A +D K +
Sbjct: 439 EEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSRTVEETLVDDHAEHPDDATGKVLL 498
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++DL+ VL++L RE+ V+R R+GM+DGR+KTL+EIG + V+RER+RQIE+ A RKL+
Sbjct: 499 KEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 558
Query: 197 KKRNNHLQQYL 165
RN L++YL
Sbjct: 559 PSRNGILREYL 569
[70][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 105 bits (263), Expect = 2e-21
Identities = 53/131 (40%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 240 EEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL 299
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 300 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 359
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 360 PSRSKRLKDFL 370
[71][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 105 bits (262), Expect = 2e-21
Identities = 52/131 (39%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA LS++++ ++ + P SL+ IG + + I D EA+ D E +
Sbjct: 246 EEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELL 305
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 306 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 365
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 366 PSRSKRLKDFL 376
[72][TOP]
>UniRef100_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus Phytoplasma mali AT
RepID=B3QZV6_PHYMT
Length = 419
Score = 105 bits (262), Expect = 2e-21
Identities = 48/129 (37%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EE++E +S K+L + + K P SL+ ++G + E I+DP++++ D +++E M
Sbjct: 282 EELSEFINISEKKLRIIEIIKKKPISLEARVGEKDDSSLGEFISDPDSLSPHDYMLQEIM 341
Query: 377 RQDLDKVL-DSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ L+++L D+L RE++++R R+G+ +G++ TL+E+G + GV+RER+RQIE+ AFR+L+
Sbjct: 342 KNTLNEILEDTLTDREEKILRMRYGLSNGKVHTLEEVGNVFGVTRERIRQIEAKAFRRLR 401
Query: 200 NKKRNNHLQ 174
R N L+
Sbjct: 402 TPARQNKLK 410
[73][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 105 bits (262), Expect = 2e-21
Identities = 51/131 (38%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EE+AE L+ +++ +L + P SL+ IG + + I D +A+ D E +
Sbjct: 241 EEVAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELL 300
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 301 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 360
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 361 PSRSKRLKDFL 371
[74][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 104 bits (260), Expect = 4e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ LS ++ ++ + P SL+ IG + + I D +A+ D E +
Sbjct: 236 EEIAKEMELSTDKVREIMKISQEPVSLETPIGEENDSNLGDFIEDQDALAPADAASYELL 295
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG+EDGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 296 KEQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLRH 355
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 356 PSRSKRLKDFL 366
[75][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 104 bits (260), Expect = 4e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ LS ++ ++ + P SL+ IG + + I D EA+ D E +
Sbjct: 244 EEIAKEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[76][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 88/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I +D+ K +
Sbjct: 331 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDTENPEQDVA-KNLL 389
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 390 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRH 449
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 450 PNRNGVLKEYI 460
[77][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 341 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 399
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 400 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 459
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 460 PNRNGVLKEYI 470
[78][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 379
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 380 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 439
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 440 PNRNGVLKEYI 450
[79][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 305 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 363
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 364 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 423
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 424 PNRNGVLKEYI 434
[80][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 310 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 368
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 369 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 428
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 429 PNRNGVLKEYI 439
[81][TOP]
>UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM
Length = 432
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI L+ ++ +L + P SL+ IG + + I D EAV+ D E +
Sbjct: 297 EEIGAEMDLTADKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYEML 356
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ L+ VLD+L RE+ V+R RFG+EDGR +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 357 REQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 416
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 417 PSRSKQLKDFM 427
[82][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 104 bits (260), Expect = 4e-21
Identities = 52/131 (39%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ +++ +L + P SL+ IG + + I D EA + + E +
Sbjct: 243 EEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELL 302
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 362
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 363 PSRSKRLKDFL 373
[83][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 104 bits (260), Expect = 4e-21
Identities = 51/131 (38%), Positives = 86/131 (65%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ L+ +++ +L + P SL+ IG + + I D +A+ +D E +
Sbjct: 233 EEIAKEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDAAAYELL 292
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 293 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 352
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 353 PSRSKRLKDFL 363
[84][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 104 bits (260), Expect = 4e-21
Identities = 51/131 (38%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ +++ ++ + P SL+ IG + + I D +A+ D E +
Sbjct: 245 EEIAEKMDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELL 304
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 305 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 364
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 365 PSRSKRLKDFL 375
[85][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 320 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 378
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 379 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 438
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 439 PNRNGVLKEYI 449
[86][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 88/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I +D+ K +
Sbjct: 314 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDTENPEQDVA-KNLL 372
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 373 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRH 432
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 433 PNRNGVLKEYI 443
[87][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 379
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 380 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 439
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 440 PNRNGVLKEYI 450
[88][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 349 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 407
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 408 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 467
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 468 PNRNGVLKEYI 478
[89][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 328 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 386
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 387 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 446
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 447 PNRNGVLKEYI 457
[90][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 104 bits (260), Expect = 4e-21
Identities = 52/131 (39%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ +++ +L + P SL+ IG + + I D EA + + E +
Sbjct: 246 EEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELL 305
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 306 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 365
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 366 PSRSKRLKDFL 376
[91][TOP]
>UniRef100_C4CH81 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CH81_9CHLR
Length = 538
Score = 104 bits (260), Expect = 4e-21
Identities = 52/132 (39%), Positives = 83/132 (62%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EEIA GL ++ +L + P SL+ IG ++ + I D +A+ D +
Sbjct: 406 SEEIAAEMGLPPDKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAASLKL 465
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+++ +D VL SLG RE++V+ RFG++DGR +TL+E+G GV+RER+RQIE+ A RKL+
Sbjct: 466 LKEQVDDVLGSLGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRKLR 525
Query: 200 NKKRNNHLQQYL 165
+ R+ L+ YL
Sbjct: 526 HPSRSKKLRDYL 537
[92][TOP]
>UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC
Length = 432
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI L+ ++ +L + P SL+ IG + + I D EAV+ D E +
Sbjct: 297 EEIGAEIDLTADKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYEML 356
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ L+ VLD+L RE+ V+R RFG+EDGR +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 357 REQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 416
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 417 PSRSKQLKDFM 427
[93][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 373 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 431
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 432 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 491
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 492 PNRNGVLKEYI 502
[94][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 104 bits (260), Expect = 4e-21
Identities = 52/131 (39%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ +++ +L + P SL+ IG + + I D EA + + E +
Sbjct: 244 EEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[95][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 317 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 375
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 376 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 435
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 436 PNRNGVLKEYI 446
[96][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 326 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 384
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 385 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 444
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 445 PNRNGVLKEYI 455
[97][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 339 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 397
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 398 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 457
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 458 PNRNGVLKEYI 468
[98][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 104 bits (260), Expect = 4e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 330 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLL 388
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 389 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 448
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 449 PNRNGVLKEYI 459
[99][TOP]
>UniRef100_UPI0001B45B52 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium
intracellulare ATCC 13950 RepID=UPI0001B45B52
Length = 319
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+A +G+ + ++ +L + P SLD +G + + I D EA+++E+ +I E
Sbjct: 187 DEELAAESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAEL 246
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 247 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLR 306
Query: 200 NKKRNNHLQQY 168
N +R + L+ Y
Sbjct: 307 NGERADRLRSY 317
[100][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[101][TOP]
>UniRef100_A0QIP2 RNA polymerase sigma factor n=2 Tax=Mycobacterium avium
RepID=A0QIP2_MYCA1
Length = 319
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+A +G+ + ++ +L + P SLD +G + + I D EA+++E+ +I E
Sbjct: 187 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAEL 246
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 247 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLR 306
Query: 200 NKKRNNHLQQY 168
N +R + L+ Y
Sbjct: 307 NGERADRLRSY 317
[102][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 104 bits (259), Expect = 5e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 288 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLL 346
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 347 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 406
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 407 PNRNGVLKEYI 417
[103][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[104][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[105][TOP]
>UniRef100_B8ZQV3 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae
RepID=B8ZQV3_MYCLB
Length = 319
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 85/131 (64%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+A +G+ ++++ +L + P SLD +G + + I D EA+++E+ +I E
Sbjct: 187 DEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAEL 246
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 247 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLR 306
Query: 200 NKKRNNHLQQY 168
N +R + L+ Y
Sbjct: 307 NGERADRLRSY 317
[106][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[107][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 104 bits (259), Expect = 5e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 288 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLL 346
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 347 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 406
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 407 PNRNGVLKEYI 417
[108][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 104 bits (259), Expect = 5e-21
Identities = 53/132 (40%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE +S K+ +L + SL++ +G ++N K ++IAD EAV + L +
Sbjct: 142 EEIAEEMNISEKKAKVLLEIVQGIVSLEEPVGEDENGKLGDIIADKEAVDPVEELESMLL 201
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIG-EMMGVSRERVRQIESSAFRKLK 201
++ +D+VL +L RE++V+R RFG++DG+++TL+E+G E+ G+SRERVRQIE+ A ++L+
Sbjct: 202 KEQVDEVLSTLAPREEKVLRLRFGLDDGKIRTLEEVGKELGGISRERVRQIETKALKRLR 261
Query: 200 NKKRNNHLQQYL 165
+ R+ L+++L
Sbjct: 262 HPNRSRRLKEFL 273
[109][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[110][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[111][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[112][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[113][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[114][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[115][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[116][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[117][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 244 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[118][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 104 bits (259), Expect = 5e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[119][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 104 bits (259), Expect = 5e-21
Identities = 52/135 (38%), Positives = 89/135 (65%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ +S+++L VL S +P SL++ + + + + + + E+ + K +
Sbjct: 294 EEIAKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVEKSML 353
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R DL+ V++SL RE+ V+R R+G++DGR+KTL+EIG++ V+RERVRQIE+ A RKL+
Sbjct: 354 RDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 413
Query: 197 KKRNNHLQQYLVAQS 153
R++ L+ Y+ + S
Sbjct: 414 PYRSSILRDYVASNS 428
[120][TOP]
>UniRef100_UPI0001AF41E8 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium kansasii
ATCC 12478 RepID=UPI0001AF41E8
Length = 319
Score = 103 bits (258), Expect = 7e-21
Identities = 52/131 (39%), Positives = 85/131 (64%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+AE +G+ + ++ +L + P SLD +G + + I D EA+++E+ +I E
Sbjct: 187 DEELAEESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAEL 246
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 247 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLR 306
Query: 200 NKKRNNHLQQY 168
+ +R + L+ Y
Sbjct: 307 HGERADRLRSY 317
[121][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 103 bits (258), Expect = 7e-21
Identities = 52/131 (39%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L ++ +L + P SL+ IG + + I D EA++ D E +
Sbjct: 249 EEIGEEMELGPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHAAYELL 308
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 309 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 369 PSRSKRLKDFL 379
[122][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 103 bits (258), Expect = 7e-21
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EE+ + LS ++ +L + P SL+ IG + + I D EA+ D E +
Sbjct: 242 EEVGKEMDLSPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[123][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 103 bits (258), Expect = 7e-21
Identities = 52/131 (39%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA LS ++ ++ + P SL+ IG + + I D EA+ D E +
Sbjct: 245 EEIAAEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELL 304
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 305 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 364
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 365 PSRSKRLKDFL 375
[124][TOP]
>UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
19977 RepID=B1MCY5_MYCA9
Length = 323
Score = 103 bits (258), Expect = 7e-21
Identities = 51/131 (38%), Positives = 86/131 (65%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+AE +G+ ++++ +L + P SLD +G ++ + I D EA+++E+ +I E
Sbjct: 191 DEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAMSAENAVIAEL 250
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE+QVIR R+G++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 251 LHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLR 310
Query: 200 NKKRNNHLQQY 168
+ R L+ Y
Sbjct: 311 HGDRAERLRSY 321
[125][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 103 bits (258), Expect = 7e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 244 EEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[126][TOP]
>UniRef100_Q59553 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis
RepID=Q59553_MYCSM
Length = 319
Score = 103 bits (258), Expect = 7e-21
Identities = 51/124 (41%), Positives = 84/124 (67%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+AE +G+ ++++ +L + P SLD +G ++ + I D EA+++E+ +I E
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISEL 246
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE+QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 247 LHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLR 306
Query: 200 NKKR 189
N +R
Sbjct: 307 NGER 310
[127][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 103 bits (258), Expect = 7e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 9 EEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELL 68
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 69 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 128
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 129 PSRSKRLKDFL 139
[128][TOP]
>UniRef100_C8W713 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Atopobium
parvulum DSM 20469 RepID=C8W713_ATOPD
Length = 455
Score = 103 bits (258), Expect = 7e-21
Identities = 52/131 (39%), Positives = 81/131 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI G+S R+ + + P SL+ IG ++ + + I D AV D +
Sbjct: 323 EEIGSEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAVAPPDAASDSML 382
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ L++VLDSL RE++VI++RFG+EDG +TL+E+G+ GV+RER+RQIES KL++
Sbjct: 383 REQLEQVLDSLADRERKVIKFRFGLEDGHPRTLEEVGKEFGVTRERIRQIESKTLAKLRH 442
Query: 197 KKRNNHLQQYL 165
R+ L+ Y+
Sbjct: 443 PSRSGRLKDYM 453
[129][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
RepID=C2C209_LISGR
Length = 389
Score = 103 bits (258), Expect = 7e-21
Identities = 52/131 (39%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 258 EEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL 317
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 318 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 377
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 378 PSRSKQLKDFL 388
[130][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 103 bits (258), Expect = 7e-21
Identities = 51/131 (38%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE +S ++ ++ + P SL+ IG + + I D +A + D E +
Sbjct: 246 EEIAEEMDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELL 305
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 306 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 365
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 366 PSRSKRLKDFL 376
[131][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 103 bits (258), Expect = 7e-21
Identities = 54/133 (40%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIG-MNQNLKPSEVIADPEAVTSEDILIKEF 381
EEIA +S++++ + + + P SL Q +G N+ + + D A E + K
Sbjct: 383 EEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLIDANAEGPEKVSGKSL 442
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+++DL+ VL++L RE+ V+R R+G++DGR+KTL+EIG + V+RER+RQIE+ A RKLK
Sbjct: 443 LKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLK 502
Query: 200 NKKRNNHLQQYLV 162
RN LQ+Y V
Sbjct: 503 QPSRNQVLQEYFV 515
[132][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 103 bits (257), Expect = 9e-21
Identities = 53/131 (40%), Positives = 90/131 (68%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + ++ E + K +
Sbjct: 308 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTLL 366
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 367 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 426
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 427 PNRNGVLKEYI 437
[133][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 103 bits (257), Expect = 9e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 266 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 324
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 325 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 384
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 385 PNRNGVLKEYI 395
[134][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 103 bits (257), Expect = 9e-21
Identities = 50/131 (38%), Positives = 86/131 (65%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ G+S ++ ++ + P SL+ IG ++ + + DP+A + +
Sbjct: 239 EEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLL 298
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ LD+VL +L RE++V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 299 REQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRH 358
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 359 PSRSKKLKDFL 369
[135][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 103 bits (257), Expect = 9e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 321
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 322 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 381
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 382 PNRNGVLKEYI 392
[136][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 103 bits (257), Expect = 9e-21
Identities = 53/131 (40%), Positives = 90/131 (68%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + ++ E + K +
Sbjct: 295 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTLL 353
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 354 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 413
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 414 PNRNGVLKEYI 424
[137][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 103 bits (257), Expect = 9e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 321
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 322 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 381
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 382 PNRNGVLKEYI 392
[138][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 103 bits (257), Expect = 9e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 264 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 322
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 323 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 382
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 383 PNRNGVLKEYI 393
[139][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 103 bits (257), Expect = 9e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 267 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 325
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 326 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 385
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 386 PNRNGVLKEYI 396
[140][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 103 bits (257), Expect = 9e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 264 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 322
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 323 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 382
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 383 PNRNGVLKEYI 393
[141][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
delbrueckii subsp. lactis RepID=Q71HU9_LACDL
Length = 167
Score = 103 bits (257), Expect = 9e-21
Identities = 53/131 (40%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA L +K++ VL + P SL+ IG + + I D +A + E E +
Sbjct: 36 EEIAAEMDLPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEML 95
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
+ L +VLD+L RE+ V+R RFG++DG +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 96 KDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRH 155
Query: 197 KKRNNHLQQYL 165
R+N L+ +L
Sbjct: 156 PSRSNQLRDFL 166
[142][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 103 bits (257), Expect = 9e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE G+S +++ ++ + P SL+ IG ++ + I D EA + +
Sbjct: 238 EEIAEKMGISPEKVREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEASYALL 297
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ L++VL SL RE++V+R RFG++DGR +TL+E+G+ GV+RER+RQIE+ RKL++
Sbjct: 298 REQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRH 357
Query: 197 KKRNNHLQQYL 165
R+ L+ YL
Sbjct: 358 PSRSKKLKDYL 368
[143][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 103 bits (257), Expect = 9e-21
Identities = 51/131 (38%), Positives = 87/131 (66%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAEA +S++R+ ++ + P SL+ IG ++ + I D +A + +
Sbjct: 244 EEIAEAMEISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VLD+L RE++V+R RFG++DGR +TL+E+G+ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSRKLKDFL 374
[144][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 103 bits (257), Expect = 9e-21
Identities = 51/131 (38%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ +++ +L + P SL+ IG + + I D +A + + E +
Sbjct: 244 EEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[145][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 103 bits (257), Expect = 9e-21
Identities = 53/131 (40%), Positives = 89/131 (67%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I + + E + K +
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLL 321
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++
Sbjct: 322 REDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 381
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 382 PNRNGVLKEYI 392
[146][TOP]
>UniRef100_B9CNX8 RNA polymerase sigma factor n=1 Tax=Atopobium rimae ATCC 49626
RepID=B9CNX8_9ACTN
Length = 455
Score = 103 bits (257), Expect = 9e-21
Identities = 51/131 (38%), Positives = 81/131 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI G+S R+ + + P SL+ IG ++ + + I D A+ D +
Sbjct: 323 EEIGAEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAASDSML 382
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ L++VLD L RE++VI++RFG+EDGR +TL+E+G GV+RER+RQIES KL++
Sbjct: 383 REQLEQVLDGLADRERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTLAKLRH 442
Query: 197 KKRNNHLQQYL 165
R++ L+ Y+
Sbjct: 443 PSRSSRLKDYM 453
[147][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 103 bits (257), Expect = 9e-21
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 242 EEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEGDSHLGDFIEDQEATSPADHAAYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 362 PSRSKRLKDFL 372
[148][TOP]
>UniRef100_B0AAF1 RNA polymerase sigma factor n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0AAF1_9CLOT
Length = 306
Score = 103 bits (257), Expect = 9e-21
Identities = 52/132 (39%), Positives = 83/132 (62%)
Frame = -2
Query: 563 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 384
K EEIA+ + +++++ V+ + P+S++ IG + + +VI D EA + E+I+ +
Sbjct: 170 KPEEIAKRMHVPVEKVVQVIRISQRPQSIESTIGQEDDTELEQVIPDKEAHSPEEIVTRS 229
Query: 383 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 204
++ ++ VLD+L REK VI+ RFG+ DG KTL+E+G V+RER RQIE A RKL
Sbjct: 230 LLKDQIEYVLDTLSEREKGVIKLRFGLGDGEKKTLEEVGRAFNVTRERARQIEKKALRKL 289
Query: 203 KNKKRNNHLQQY 168
+ R+N L Y
Sbjct: 290 AHPSRSNKLLDY 301
[149][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
RepID=B8CXH1_HALOH
Length = 358
Score = 103 bits (256), Expect = 1e-20
Identities = 53/131 (40%), Positives = 81/131 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E G+ +++ +L + P SL+ IG ++ + I D +A +
Sbjct: 227 EEIGEEMGMPAEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDEDAPAPASAASFTLL 286
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ LD VLD+L REK+V+ RFG+EDGR +TL+E+G+ GV+RER+RQIE+ A RKL++
Sbjct: 287 REQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRH 346
Query: 197 KKRNNHLQQYL 165
R+ L+ YL
Sbjct: 347 PSRSKKLKDYL 357
[150][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 103 bits (256), Expect = 1e-20
Identities = 51/131 (38%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ +++ +L + P SL+ IG + + I D +A + + E +
Sbjct: 241 EEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELL 300
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 301 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 360
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 361 PSRSKRLKDFL 371
[151][TOP]
>UniRef100_C7N4Z8 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family n=1 Tax=Slackia
heliotrinireducens DSM 20476 RepID=C7N4Z8_SLAHD
Length = 394
Score = 103 bits (256), Expect = 1e-20
Identities = 54/131 (41%), Positives = 80/131 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E GLS +R+ + + P SL+ IG ++ + + I D A+ D M
Sbjct: 262 EEIGEKMGLSAERVREIQKLSQEPVSLETPIGEEEDSQLGDFIEDDSAIVPVDAASFAMM 321
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L KVLD+LG RE+ V+ RFG+EDG+ TL+E+G GV+RER+RQIES KL++
Sbjct: 322 QEQLSKVLDTLGERERNVVIKRFGLEDGQPHTLEEVGREFGVTRERIRQIESKTLAKLRH 381
Query: 197 KKRNNHLQQYL 165
R++ L+ YL
Sbjct: 382 PSRSSKLKDYL 392
[152][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 103 bits (256), Expect = 1e-20
Identities = 51/131 (38%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L+ +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 244 EEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELL 303
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ V+D+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 304 KEQLEDVIDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 363
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 364 PSRSKRLKDFL 374
[153][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 103 bits (256), Expect = 1e-20
Identities = 52/131 (39%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ VL + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[154][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
J2-071 RepID=UPI0000F53BBC
Length = 374
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D +A + D E +
Sbjct: 243 EEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELL 302
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 362
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 363 PSRSKQLKDFL 373
[155][TOP]
>UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV68_SULAA
Length = 586
Score = 102 bits (255), Expect = 2e-20
Identities = 49/131 (37%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ G+ +++ +L + + P SL+ IG ++ + I D ++ E ++K +
Sbjct: 453 EEIAKKVGMPAEKVKKILRTSQEPISLETPIGTDEETHLGDFIEDKSVLSPEAHMLKNAL 512
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R LD+VL +L RE+QV+R+RFG+ED TL+++G+ GV+RER+RQIE+ A RKL++
Sbjct: 513 RMQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLRH 572
Query: 197 KKRNNHLQQYL 165
R +L+ ++
Sbjct: 573 PHRAKYLKPFI 583
[156][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 102 bits (255), Expect = 2e-20
Identities = 53/131 (40%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE +S ++ +L + P SL+ IG + + I D +A D E +
Sbjct: 229 EEIAEQMDMSEDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAKPPADAAAFELL 288
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
+ L++VLDSL RE++V+R RFG++DG+ +TL+E+G+ GV+RER+RQIE+ A RKL++
Sbjct: 289 KGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRKLRH 348
Query: 197 KKRNNHLQQYL 165
R+ L+ YL
Sbjct: 349 PMRSKRLKDYL 359
[157][TOP]
>UniRef100_A8ETJ7 RNA polymerase sigma factor n=1 Tax=Arcobacter butzleri RM4018
RepID=A8ETJ7_ARCB4
Length = 626
Score = 102 bits (255), Expect = 2e-20
Identities = 57/132 (43%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ GL + ++ V+ K P SL+ IG +++ K + + D +A T D ++KE +
Sbjct: 493 EEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDEDGKFGDFVPDEKAPTPIDNIMKEDL 552
Query: 377 RQDLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ +D++L L RE+ VIR RFG MED +TL+EIG+ + V+RERVRQIESSA +KLK
Sbjct: 553 QGQIDQILSQLNEREQAVIRMRFGLMEDASDRTLEEIGKELNVTRERVRQIESSAIKKLK 612
Query: 200 NKKRNNHLQQYL 165
+ K +L+ Y+
Sbjct: 613 HPKVGKNLKNYV 624
[158][TOP]
>UniRef100_A0PT65 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99
RepID=A0PT65_MYCUA
Length = 323
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 86/131 (65%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+A +G+ ++++ +L + P SLD +G ++ + I D EA+++E+ +I E
Sbjct: 191 DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVIAEL 250
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 251 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLR 310
Query: 200 NKKRNNHLQQY 168
+ +R + L+ Y
Sbjct: 311 HGERADRLRSY 321
[159][TOP]
>UniRef100_Q4HQG2 RNA polymerase sigma factor n=1 Tax=Campylobacter upsaliensis
RM3195 RepID=Q4HQG2_CAMUP
Length = 619
Score = 102 bits (255), Expect = 2e-20
Identities = 55/131 (41%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
Frame = -2
Query: 554 EIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMR 375
+IA+ GLS+ ++ V+ K P SL+ IG ++ K + + D +++ D ++K+ ++
Sbjct: 485 DIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEEDGKFGDFVEDKNSLSPMDNILKDDLK 544
Query: 374 QDLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
+ +D+VLD L REK VIR RFG +ED +TL+EIG+ + V+RERVRQIESSA +KLK+
Sbjct: 545 EQIDEVLDQLNDREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLKH 604
Query: 197 KKRNNHLQQYL 165
K L+ Y+
Sbjct: 605 PKVGRKLKNYI 615
[160][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[161][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[162][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[163][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 211 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 270
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 271 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 330
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 331 PSRSKRLKDFM 341
[164][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[165][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI ++ +++ +L + P SL+ IG + + I D EAV+ D + +
Sbjct: 247 EEIGAEMDVATEKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYQML 306
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG+EDGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 307 KEQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 366
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 367 PSRSKQLRDFL 377
[166][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[167][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
RepID=RPOD_LISMO
Length = 374
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D +A + D E +
Sbjct: 243 EEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELL 302
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 362
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 363 PSRSKQLKDFL 373
[168][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
Length = 374
Score = 102 bits (255), Expect = 2e-20
Identities = 51/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D +A + D E +
Sbjct: 243 EEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELL 302
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 362
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 363 PSRSKQLKDFL 373
[169][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 102 bits (254), Expect = 2e-20
Identities = 49/131 (37%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +S +++ + + P SL+ +G + + I D +A+ D E +
Sbjct: 185 EEIGKEMDISPEKVREIQKVSQEPVSLETPVGEESDSNLGDFIEDQDALAPADAAAFELL 244
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VLD+L RE+ V+R RFG+EDGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 245 KEQLEEVLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRH 304
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 305 PSRSKRLKDFL 315
[170][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[171][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[172][TOP]
>UniRef100_B2HLY9 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
RepID=B2HLY9_MYCMM
Length = 333
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 85/131 (64%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+A +G+ ++++ +L + P SLD +G + + I D EA+++E+ +I E
Sbjct: 201 DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAEL 260
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 261 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLR 320
Query: 200 NKKRNNHLQQY 168
+ +R + L+ Y
Sbjct: 321 HGERADRLRSY 331
[173][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 102 bits (254), Expect = 2e-20
Identities = 49/131 (37%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI++ ++ +++ +L + P SL+ IG + + I D +A +D E +
Sbjct: 230 EEISKEMEITPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATAPQDAAAYELL 289
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 290 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 349
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 350 PSRSKRLKDFL 360
[174][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE L+ ++ +L + P SL+ IG + + I D +A + + E +
Sbjct: 243 EEIAEDMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELL 302
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 303 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 362
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 363 PSRSKRLKDFL 373
[175][TOP]
>UniRef100_P77906 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
RepID=P77906_MYCTU
Length = 345
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 84/131 (64%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+A +G+ + ++ +L + P SLD +G + + I D EA+++E+ +I E
Sbjct: 213 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAEL 272
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 273 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLR 332
Query: 200 NKKRNNHLQQY 168
+ +R + L+ Y
Sbjct: 333 HGERADRLRSY 343
[176][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
13335 RepID=C8PAI1_9LACO
Length = 382
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI +S ++ +L + P SL+ IG + + I D +A + E E +
Sbjct: 251 EEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELL 310
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VLD+L RE+ V+R RFG+ DGR +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 311 KEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 370
Query: 197 KKRNNHLQQYL 165
R+N L+ +L
Sbjct: 371 PSRSNQLKDFL 381
[177][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[178][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[179][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 236 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 295
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 296 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 355
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 356 PSRSKRLKDFM 366
[180][TOP]
>UniRef100_C3XP94 RNA polymerase sigma factor (Fragment) n=1 Tax=Helicobacter
winghamensis ATCC BAA-430 RepID=C3XP94_9HELI
Length = 615
Score = 102 bits (254), Expect = 2e-20
Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
E+IAE GL + ++ V+ K P SL+ IG ++ K + + D AV D ++KE +
Sbjct: 485 EKIAEEVGLPLDKVKNVIKITKEPISLEAPIGNGEDGKFGDFVEDKSAVGPMDHILKEDL 544
Query: 377 RQDLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ +D VLD L REK VIR RFG ++D +TL+EIG+ + V+RERVRQIESSA +KLK
Sbjct: 545 KSQIDDVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLK 604
Query: 200 NKKRNNHLQQY 168
+ K L+ Y
Sbjct: 605 HPKVGRKLKNY 615
[181][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[182][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GBZ7_9FIRM
Length = 372
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
+EIA +S +R+ +L + P SL+ IG + + I D + + E +
Sbjct: 241 DEIAHVMNISEERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDVQAPAEAAAFELL 300
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ LD VL++L REK+V+ RFG+EDGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 301 KEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRH 360
Query: 197 KKRNNHLQQYL 165
R+ L+ YL
Sbjct: 361 PMRSKRLKDYL 371
[183][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[184][TOP]
>UniRef100_A5WQW2 RNA polymerase sigma factor n=9 Tax=Mycobacterium tuberculosis
complex RepID=A5WQW2_MYCTF
Length = 345
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 84/131 (64%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+A +G+ + ++ +L + P SLD +G + + I D EA+++E+ +I E
Sbjct: 213 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAEL 272
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 273 LHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLR 332
Query: 200 NKKRNNHLQQY 168
+ +R + L+ Y
Sbjct: 333 HGERADRLRSY 343
[185][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 102 bits (254), Expect = 2e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 237 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 357 PSRSKRLKDFM 367
[186][TOP]
>UniRef100_Q7M846 RNA polymerase sigma factor n=1 Tax=Wolinella succinogenes
RepID=Q7M846_WOLSU
Length = 620
Score = 102 bits (253), Expect = 3e-20
Identities = 57/132 (43%), Positives = 85/132 (64%), Gaps = 1/132 (0%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
E I+E GL + ++ V+ K P SL+ IG +++ K + + D +V D ++KE +
Sbjct: 487 ETISEEVGLPVDKVKNVIKITKEPISLEAPIGSDEDGKFGDFVEDKSSVGPMDHILKEDL 546
Query: 377 RQDLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ +D+VLD L REK VIR RFG +ED +TL+EIG+ + V+RERVRQIESSA +KLK
Sbjct: 547 KTQIDEVLDQLNEREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLK 606
Query: 200 NKKRNNHLQQYL 165
+ K L+ Y+
Sbjct: 607 HPKVGRKLKNYI 618
[187][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2V7P9_SULSY
Length = 590
Score = 102 bits (253), Expect = 3e-20
Identities = 49/131 (37%), Positives = 85/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ G+ ++ +L + + P SL+ IG ++ + I D ++ E ++K+ +
Sbjct: 457 EEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQAL 516
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R LD+VL +L RE+QV+R+RFG+ED TL+++G+ GV+RER+RQIE+ A RKL++
Sbjct: 517 RLQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLRH 576
Query: 197 KKRNNHLQQYL 165
R +L+ ++
Sbjct: 577 PHRAKYLKPFI 587
[188][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 102 bits (253), Expect = 3e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + ED E +
Sbjct: 285 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELL 344
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 345 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 404
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 405 PSRSKQLKDFL 415
[189][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 102 bits (253), Expect = 3e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + ED E +
Sbjct: 221 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELL 280
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 281 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 340
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 341 PSRSKQLKDFL 351
[190][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 102 bits (253), Expect = 3e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + ED E +
Sbjct: 285 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELL 344
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 345 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 404
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 405 PSRSKQLKDFL 415
[191][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 102 bits (253), Expect = 3e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + ED E +
Sbjct: 291 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELL 350
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 351 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 410
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 411 PSRSKQLKDFL 421
[192][TOP]
>UniRef100_C1TLL9 RNA polymerase sigma factor n=1 Tax=Dethiosulfovibrio peptidovorans
DSM 11002 RepID=C1TLL9_9BACT
Length = 381
Score = 102 bits (253), Expect = 3e-20
Identities = 50/132 (37%), Positives = 82/132 (62%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EEIA G+ +++ + + P SL+ +G + + + I D + ++ +D EF
Sbjct: 249 DEEIAAEMGIEPAKVVQIRKVAQEPISLESPVGEEDDSELGDFIEDKDMISPDDSTSMEF 308
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+R LD VL+ L REKQV+R RFG +DG+ TL+++G GV+RER+RQIE+ A RKL+
Sbjct: 309 LRDQLDDVLEGLTDREKQVLRLRFGFDDGQCYTLEDVGRRFGVTRERIRQIEAKALRKLR 368
Query: 200 NKKRNNHLQQYL 165
+ R+ L+ Y+
Sbjct: 369 HPSRSVTLRDYM 380
[193][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 102 bits (253), Expect = 3e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + ED E +
Sbjct: 285 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELL 344
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 345 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 404
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 405 PSRSKQLKDFL 415
[194][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 101 bits (252), Expect = 3e-20
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D EA + + E +
Sbjct: 206 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSEHAAYELL 265
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 266 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 325
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 326 PSRSKRLKDFL 336
[195][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 101 bits (252), Expect = 3e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + ++ +L + P SL+ IG + + I D +A + E E +
Sbjct: 241 EEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELL 300
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 301 KEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 360
Query: 197 KKRNNHLQQYL 165
R+N L+ +L
Sbjct: 361 PSRSNQLKDFL 371
[196][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
Length = 372
Score = 101 bits (252), Expect = 3e-20
Identities = 52/131 (39%), Positives = 81/131 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA L +K++ L + P SL+ IG + + I D +A + E E +
Sbjct: 241 EEIAAEMDLPVKKVREALKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEML 300
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
+ L +VLD+L RE+ V+R RFG++DG +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 301 KDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRH 360
Query: 197 KKRNNHLQQYL 165
R+N L+ +L
Sbjct: 361 PSRSNKLRDFL 371
[197][TOP]
>UniRef100_B1MYH4 RNA polymerase sigma factor n=1 Tax=Leuconostoc citreum KM20
RepID=B1MYH4_LEUCK
Length = 432
Score = 101 bits (252), Expect = 3e-20
Identities = 51/131 (38%), Positives = 81/131 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI L+ ++ +L + P SL+ IG + + I D EA++ D E +
Sbjct: 297 EEIGAEMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAISPADSAAYEML 356
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R L+ VL++L RE+ V+R RFG+EDGR +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 357 RDQLESVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 416
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 417 PSRSKQLKDFM 427
[198][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 101 bits (252), Expect = 3e-20
Identities = 51/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + K++ +L + P SL+ IG + + I D +A + D E M
Sbjct: 250 EEIGAEMDMPTKKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMM 309
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 310 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 369
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 370 PSRSKQLKDFL 380
[199][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 101 bits (252), Expect = 3e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + ++ +L + P SL+ IG + + I D +A + E E +
Sbjct: 233 EEIGAEMDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEML 292
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 293 KEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 352
Query: 197 KKRNNHLQQYL 165
R+N L+ +L
Sbjct: 353 PSRSNQLKDFL 363
[200][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 101 bits (252), Expect = 3e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + ++ +L + P SL+ IG + + I D +A + E E +
Sbjct: 241 EEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELL 300
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 301 KEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 360
Query: 197 KKRNNHLQQYL 165
R+N L+ +L
Sbjct: 361 PSRSNQLKDFL 371
[201][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C2E1K8_9LACO
Length = 364
Score = 101 bits (252), Expect = 3e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + ++ +L + P SL+ IG + + I D +A + E E +
Sbjct: 233 EEIGAEMDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEML 292
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 293 KEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 352
Query: 197 KKRNNHLQQYL 165
R+N L+ +L
Sbjct: 353 PSRSNQLKDFL 363
[202][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 101 bits (252), Expect = 3e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + ++ +L + P SL+ IG + + I D +A + E E +
Sbjct: 242 EEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELL 301
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 302 KEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 361
Query: 197 KKRNNHLQQYL 165
R+N L+ +L
Sbjct: 362 PSRSNQLKDFL 372
[203][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 101 bits (252), Expect = 3e-20
Identities = 53/131 (40%), Positives = 84/131 (64%), Gaps = 1/131 (0%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGM-NQNLKPSEVIADPEAVTSEDILIKEF 381
EEIA +S +++ + + + P SL Q +G N+ + + D A E + K
Sbjct: 197 EEIAAEMDMSAEKITQIKKAAQAPVSLAQTMGGDNKGRTVEDTLVDVTAEGPEKVSGKSL 256
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+++DL+ VL++L RE+ V+R R+G++DGR+KTL+EIG + V+RER+RQIE+ A RKLK
Sbjct: 257 LKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLK 316
Query: 200 NKKRNNHLQQY 168
RN+ LQ+Y
Sbjct: 317 QPSRNSILQEY 327
[204][TOP]
>UniRef100_Q1G9X1 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842 RepID=Q1G9X1_LACDA
Length = 372
Score = 101 bits (251), Expect = 4e-20
Identities = 52/131 (39%), Positives = 80/131 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA L +K++ L + P SL+ IG + + I D + + E E +
Sbjct: 241 EEIAAEMDLPVKKVREALKVAQEPVSLETPIGEEDDSHLGDFIEDKDTTSPEQHAASEML 300
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R L +VLD+L RE+ V+R RFG++DG +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 301 RDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRH 360
Query: 197 KKRNNHLQQYL 165
R+N L+ +L
Sbjct: 361 PSRSNKLRDFL 371
[205][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 101 bits (251), Expect = 4e-20
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D +A + D E +
Sbjct: 235 EEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAQSPADHAAYELL 294
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 295 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 354
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 355 PSRSKRLKDFM 365
[206][TOP]
>UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V564_9FIRM
Length = 383
Score = 101 bits (251), Expect = 4e-20
Identities = 51/131 (38%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ G+++ R+ ++ + P SL+ IG ++ + I D A + +
Sbjct: 252 EEIAKEMGITVARVHEIMKIAQEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLL 311
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ L++VL++L REK V+R RFG+EDGR +TL+E+G+ GV+RER+RQIE+ A RKL++
Sbjct: 312 REQLEEVLETLTDREKNVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRH 371
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 372 PSRSKVLRDFL 382
[207][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 100 bits (250), Expect = 6e-20
Identities = 49/130 (37%), Positives = 85/130 (65%)
Frame = -2
Query: 554 EIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMR 375
E+AE +++ R++ ++ + P SL+ IG + + I D EA + E+ +R
Sbjct: 228 EVAEEMDIAVDRVIEIMKVAQEPVSLETPIGEEDDSHLGDFITDEEAESPEESASFVLLR 287
Query: 374 QDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNK 195
+ LD +L++L RE++V+R RFG++DGR +TL+E+G+ GV+RER+RQIE+ A RKL++
Sbjct: 288 EHLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHP 347
Query: 194 KRNNHLQQYL 165
R+ L+ Y+
Sbjct: 348 SRSKKLKDYI 357
[208][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 100 bits (250), Expect = 6e-20
Identities = 50/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E L +++ +L + P SL+ IG + + I D E + D E +
Sbjct: 238 EEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDHAAYELL 297
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 298 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 357
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 358 PSRSKRLKDFM 368
[209][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 100 bits (250), Expect = 6e-20
Identities = 52/131 (39%), Positives = 87/131 (66%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIAE+ +++++L + S + P SL+ IG ++ + + I +D+ K +
Sbjct: 271 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIENPDQDVA-KNLL 329
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+DL+ VL +L RE+ V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A KL++
Sbjct: 330 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALLKLRH 389
Query: 197 KKRNNHLQQYL 165
RN L++Y+
Sbjct: 390 PNRNGVLKEYI 400
[210][TOP]
>UniRef100_Q4HEV2 RNA polymerase sigma factor n=1 Tax=Campylobacter coli RM2228
RepID=Q4HEV2_CAMCO
Length = 621
Score = 100 bits (250), Expect = 6e-20
Identities = 55/130 (42%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = -2
Query: 551 IAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQ 372
IA+ GLS+ ++ V+ K P SL+ IG + K + + D +++ D ++K+ +++
Sbjct: 488 IAKEVGLSVDKVKQVIKITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHILKDDLKE 547
Query: 371 DLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNK 195
+D+VLD L REK VIR RFG M+D +TL+EIG+ + V+RERVRQIESSA +KLK+
Sbjct: 548 QIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHP 607
Query: 194 KRNNHLQQYL 165
K L+ Y+
Sbjct: 608 KVGRKLKNYI 617
[211][TOP]
>UniRef100_C6LFQ8 RNA polymerase sigma factor n=1 Tax=Bryantella formatexigens DSM
14469 RepID=C6LFQ8_9FIRM
Length = 374
Score = 100 bits (250), Expect = 6e-20
Identities = 51/132 (38%), Positives = 81/132 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EE+AE + + R+ VL + P SLD IG + + I D A++ D +
Sbjct: 243 EEVAERLNVPVSRVREVLKISRDPVSLDTPIGEEDDSHLGDFIEDDSALSPSDSAAFSML 302
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R++L L+SL RE+QV++ RFG+ DGR +TL+E+G+ V+RER+RQIE+ A RKL++
Sbjct: 303 REELGTALESLTDRERQVVQLRFGLIDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 362
Query: 197 KKRNNHLQQYLV 162
R+ L+ +L+
Sbjct: 363 PSRSKRLKDFLI 374
[212][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 100 bits (250), Expect = 6e-20
Identities = 51/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA L+ +++ + + P SL+ IG + + I D EA D E +
Sbjct: 237 EEIAAEMDLTPEKVREIQKIAQEPVSLETPIGEEDDSHLGDFIPDDEAPAPADAAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 357 PSRSKRLKDFL 367
[213][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 100 bits (249), Expect = 8e-20
Identities = 49/131 (37%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI ++ ++ +L + P SL+ IG + + I D +A + E+ E +
Sbjct: 238 EEIGAEMDMNTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELL 297
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 298 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 357
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 358 PSRSKQLKDFL 368
[214][TOP]
>UniRef100_Q9R5W0 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus
RepID=Q9R5W0_STRGR
Length = 357
Score = 100 bits (249), Expect = 8e-20
Identities = 53/131 (40%), Positives = 80/131 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EE+ E GLS +++ VL + P SL +G ++ ++I D +A + + +
Sbjct: 226 EEVGERLGLSAEKVEEVLRLAREPISLHAPVGGEDDVFLGDLIEDADAASPAESAALLLL 285
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
RQ LD VL +LG RE+QV++ R+G +DGR +TL+EIG + GV+RERVRQIES R+L+
Sbjct: 286 RQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRLRE 345
Query: 197 KKRNNHLQQYL 165
L+ YL
Sbjct: 346 HTAAGQLRGYL 356
[215][TOP]
>UniRef100_O52921 RNA polymerase sigma factor n=1 Tax=Campylobacter jejuni
RepID=O52921_CAMJE
Length = 622
Score = 100 bits (249), Expect = 8e-20
Identities = 55/130 (42%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = -2
Query: 551 IAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQ 372
IA+ GLS+ ++ V+ K P SL+ IG + K + + D +++ D ++K+ +++
Sbjct: 489 IAKEVGLSVDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKE 548
Query: 371 DLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNK 195
+D+VLD L REK VIR RFG M+D +TL+EIG+ + V+RERVRQIESSA +KLK+
Sbjct: 549 QIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHP 608
Query: 194 KRNNHLQQYL 165
K L+ Y+
Sbjct: 609 KVGRKLKNYI 618
[216][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 100 bits (249), Expect = 8e-20
Identities = 50/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + D E M
Sbjct: 249 EEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMM 308
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 369 PSRSKQLKDFL 379
[217][TOP]
>UniRef100_C6VQS5 RNA polymerase sigma factor n=1 Tax=Lactobacillus plantarum JDM1
RepID=C6VQS5_LACPJ
Length = 368
Score = 100 bits (249), Expect = 8e-20
Identities = 49/131 (37%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + D E +
Sbjct: 237 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEGVLDTLTNREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 357 PSRSKQLKDFL 367
[218][TOP]
>UniRef100_C5ZWP6 RNA polymerase sigma factor n=1 Tax=Helicobacter canadensis MIT
98-5491 RepID=C5ZWP6_9HELI
Length = 616
Score = 100 bits (249), Expect = 8e-20
Identities = 56/132 (42%), Positives = 85/132 (64%), Gaps = 1/132 (0%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
++IAE GL + ++ V+ K P SL+ IG ++ K + + D +V + ++KE +
Sbjct: 483 DKIAEEVGLPVDKVKNVIKITKEPISLEAPIGNGEDGKFGDFVEDKGSVGPMESILKEDL 542
Query: 377 RQDLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
++ +D VLD L REK VIR RFG +ED +TL+EIG+ + V+RERVRQIESSA +KLK
Sbjct: 543 KEQIDDVLDQLNEREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLK 602
Query: 200 NKKRNNHLQQYL 165
+ K L+ Y+
Sbjct: 603 HPKVGRKLKNYI 614
[219][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 100 bits (249), Expect = 8e-20
Identities = 50/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + D E M
Sbjct: 249 EEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMM 308
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 369 PSRSKQLKDFL 379
[220][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 100 bits (249), Expect = 8e-20
Identities = 50/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + D E M
Sbjct: 249 EEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMM 308
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 369 PSRSKQLKDFL 379
[221][TOP]
>UniRef100_C2D7B9 RNA polymerase sigma factor n=1 Tax=Atopobium vaginae DSM 15829
RepID=C2D7B9_9ACTN
Length = 441
Score = 100 bits (249), Expect = 8e-20
Identities = 51/131 (38%), Positives = 78/131 (59%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI E +S R+ + + P SL+ IG ++ + I D AV D +
Sbjct: 309 EEIGEQMKMSADRVREIQKISQEPVSLETPIGEEEDSSLGDFIEDSTAVAPPDAASDSML 368
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ L++VLD L RE++VI++RFG+EDG +TL+E+G GV+RER+RQIES KL++
Sbjct: 369 REQLNQVLDGLADRERKVIKFRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRH 428
Query: 197 KKRNNHLQQYL 165
R+ L+ Y+
Sbjct: 429 PSRSGRLKDYI 439
[222][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
RepID=A5VJI3_LACRD
Length = 380
Score = 100 bits (249), Expect = 8e-20
Identities = 50/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + D E M
Sbjct: 249 EEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMM 308
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 369 PSRSKQLKDFL 379
[223][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XRX4_LACRE
Length = 380
Score = 100 bits (249), Expect = 8e-20
Identities = 50/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + D E M
Sbjct: 249 EEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMM 308
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 368
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 369 PSRSKQLKDFL 379
[224][TOP]
>UniRef100_A1VZY9 RNA polymerase sigma factor n=6 Tax=Campylobacter jejuni
RepID=A1VZY9_CAMJJ
Length = 622
Score = 100 bits (249), Expect = 8e-20
Identities = 55/130 (42%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = -2
Query: 551 IAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQ 372
IA+ GLS+ ++ V+ K P SL+ IG + K + + D +++ D ++K+ +++
Sbjct: 489 IAKEVGLSVDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKE 548
Query: 371 DLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNK 195
+D+VLD L REK VIR RFG M+D +TL+EIG+ + V+RERVRQIESSA +KLK+
Sbjct: 549 QIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHP 608
Query: 194 KRNNHLQQYL 165
K L+ Y+
Sbjct: 609 KVGRKLKNYI 618
[225][TOP]
>UniRef100_A3YN28 RNA polymerase sigma factor n=4 Tax=Campylobacter jejuni
RepID=A3YN28_CAMJE
Length = 622
Score = 100 bits (249), Expect = 8e-20
Identities = 55/130 (42%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = -2
Query: 551 IAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQ 372
IA+ GLS+ ++ V+ K P SL+ IG + K + + D +++ D ++K+ +++
Sbjct: 489 IAKEVGLSVDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKE 548
Query: 371 DLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNK 195
+D+VLD L REK VIR RFG M+D +TL+EIG+ + V+RERVRQIESSA +KLK+
Sbjct: 549 QIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHP 608
Query: 194 KRNNHLQQYL 165
K L+ Y+
Sbjct: 609 KVGRKLKNYI 618
[226][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 100 bits (248), Expect = 1e-19
Identities = 51/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA + ++R+ + + P SL+ IG ++ + I D +A + +
Sbjct: 230 EEIAHEMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDEDAQAPAEAASFMLL 289
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ L++VL+SL REK+V+R RFG++DGR +TL+E+G+ GV+RER+RQIE+ A RKL++
Sbjct: 290 REQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRH 349
Query: 197 KKRNNHLQQYL 165
R+ L+ YL
Sbjct: 350 PSRSKKLKDYL 360
[227][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 100 bits (248), Expect = 1e-19
Identities = 49/131 (37%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ + ++++ +L + P SL+ IG ++ + I D +A+ + +
Sbjct: 286 EEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSML 345
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L +VLDSL REK+V++ RFG+EDGR +TL+E+G+ V+RER+RQIE+ A RKL++
Sbjct: 346 KEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 405
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 406 PSRSKKLKDFL 416
[228][TOP]
>UniRef100_A7H340 RNA polymerase sigma factor n=1 Tax=Campylobacter jejuni subsp.
doylei 269.97 RepID=A7H340_CAMJD
Length = 622
Score = 100 bits (248), Expect = 1e-19
Identities = 55/130 (42%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = -2
Query: 551 IAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQ 372
IA+ GLS+ ++ V+ K P SL+ IG + K + + D +++ D ++K+ +++
Sbjct: 489 IAKEVGLSIDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPIDHILKDDLKE 548
Query: 371 DLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNK 195
+D+VLD L REK VIR RFG M+D +TL+EIG+ + V+RERVRQIESSA +KLK+
Sbjct: 549 QIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHP 608
Query: 194 KRNNHLQQYL 165
K L+ Y+
Sbjct: 609 KVGRKLKNYI 618
[229][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 100 bits (248), Expect = 1e-19
Identities = 49/131 (37%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ + ++++ +L + P SL+ IG ++ + I D +A+ + +
Sbjct: 280 EEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSML 339
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L +VLDSL REK+V++ RFG+EDGR +TL+E+G+ V+RER+RQIE+ A RKL++
Sbjct: 340 KEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRH 399
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 400 PSRSKKLKDFL 410
[230][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 100 bits (248), Expect = 1e-19
Identities = 50/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI L +++ +L + P SL+ IG + + I D EA + + E +
Sbjct: 238 EEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELL 297
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 298 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 357
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 358 PSRSKQLKDFL 368
[231][TOP]
>UniRef100_C5EYF0 RNA polymerase sigma factor n=1 Tax=Helicobacter pullorum MIT
98-5489 RepID=C5EYF0_9HELI
Length = 615
Score = 100 bits (248), Expect = 1e-19
Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
E+IAE GL + ++ V+ K P SL+ IG ++ K + + D ++ D ++KE +
Sbjct: 482 EKIAEEVGLPVDKVKNVIKITKEPISLEAPIGNGEDGKFGDFVEDKASLGPMDSILKEDL 541
Query: 377 RQDLDKVLDSLGTREKQVIRWRFG-MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ +D VLD L REK VIR RFG ++D +TL+EIG+ + V+RERVRQIESSA +KLK
Sbjct: 542 KAQIDDVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLK 601
Query: 200 NKKRNNHLQQYL 165
+ K L+ Y+
Sbjct: 602 HPKVGRKLKNYI 613
[232][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EU48_9BACT
Length = 387
Score = 100 bits (248), Expect = 1e-19
Identities = 47/131 (35%), Positives = 84/131 (64%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ G+++ R+ + + P SL+ IG ++ + + + D + + ++ + +
Sbjct: 256 EEIAQEMGVTVDRVEEIQKIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPDEAAANQIL 315
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
R+ L+++L+ L REK+V+R RFG+EDG TL+E+G GV+RER+RQIE+ A RKL++
Sbjct: 316 REQLEEMLEDLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKALRKLRH 375
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 376 PSRSKRLRDFL 386
[233][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 100 bits (248), Expect = 1e-19
Identities = 50/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI L +++ +L + P SL+ IG + + I D EA + + E +
Sbjct: 238 EEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELL 297
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 298 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 357
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 358 PSRSKQLKDFL 368
[234][TOP]
>UniRef100_C2FI52 RNA polymerase sigma factor n=2 Tax=Lactobacillus plantarum
RepID=C2FI52_LACPL
Length = 368
Score = 100 bits (248), Expect = 1e-19
Identities = 49/131 (37%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + D E +
Sbjct: 237 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELL 296
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 297 KEQLEGVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 357 PSRSKQLKDFL 367
[235][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
RepID=C0XLP2_LACHI
Length = 389
Score = 100 bits (248), Expect = 1e-19
Identities = 49/131 (37%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + D E +
Sbjct: 258 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELL 317
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 318 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 377
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 378 PSRSKQLKDFL 388
[236][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
RepID=B2GBZ9_LACF3
Length = 380
Score = 100 bits (248), Expect = 1e-19
Identities = 50/131 (38%), Positives = 81/131 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + D E M
Sbjct: 249 EEIGAEMDMDTQKVRDILKISQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMM 308
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G + GV+RER+RQIE+ A RKL++
Sbjct: 309 KKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRH 368
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 369 PSRSKQLKDFL 379
[237][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
11577 RepID=C0WTG9_LACBU
Length = 389
Score = 100 bits (248), Expect = 1e-19
Identities = 49/131 (37%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + +++ +L + P SL+ IG + + I D +A + D E +
Sbjct: 258 EEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELL 317
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 318 KEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 377
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 378 PSRSKQLKDFL 388
[238][TOP]
>UniRef100_B6FWI1 RNA polymerase sigma factor n=1 Tax=Clostridium hiranonis DSM 13275
RepID=B6FWI1_9CLOT
Length = 388
Score = 100 bits (248), Expect = 1e-19
Identities = 50/133 (37%), Positives = 85/133 (63%)
Frame = -2
Query: 563 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 384
K EEIA+ LS++++ ++ + P SL+ IG ++ + I D +A +
Sbjct: 255 KPEEIAKEMDLSVEKVREIMKIAQDPVSLETPIGEEEDSHLGDFIPDDDAPAPDISAAYS 314
Query: 383 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 204
+++ +D+VL SL RE++V++ RFG+EDGR +TL+E+G+ V+RER+RQIE+ A RKL
Sbjct: 315 LLKEQIDEVLGSLNEREQKVLKLRFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 374
Query: 203 KNKKRNNHLQQYL 165
++ R+ L+ YL
Sbjct: 375 RHPSRSKKLRDYL 387
[239][TOP]
>UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
RepID=Q5YT68_NOCFA
Length = 322
Score = 99.8 bits (247), Expect = 1e-19
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+A +G+ ++++ +L + P SLD +G ++ + I D EA ++E +I
Sbjct: 190 DEELAAESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAESAVIAGL 249
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
+ D+ VL +L RE+QVIR RFG++DG+ +TL +IG++ G+SRERVRQIE KL+
Sbjct: 250 LHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLR 309
Query: 200 NKKRNNHLQQY 168
+R + L+ Y
Sbjct: 310 KGERADRLRAY 320
[240][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F68_PEDPA
Length = 379
Score = 99.8 bits (247), Expect = 1e-19
Identities = 50/131 (38%), Positives = 81/131 (61%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + ++ +L + P SL+ IG + + I D EA + D E +
Sbjct: 248 EEIGAEMDMPSDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELL 307
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L+ VLD+L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 308 KEQLEGVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 367
Query: 197 KKRNNHLQQYL 165
R+ L+ +L
Sbjct: 368 PSRSKQLKDFL 378
[241][TOP]
>UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC
4571 RepID=A8YVM2_LACH4
Length = 356
Score = 99.8 bits (247), Expect = 1e-19
Identities = 48/131 (36%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + ++ +L + P SL+ IG + + I D +A + E E +
Sbjct: 225 EEIGAEMNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEML 284
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VL++L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 285 KEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 344
Query: 197 KKRNNHLQQYL 165
R+N L+ ++
Sbjct: 345 PSRSNQLRDFM 355
[242][TOP]
>UniRef100_A4FAM7 RNA polymerase sigma factor n=1 Tax=Saccharopolyspora erythraea
NRRL 2338 RepID=A4FAM7_SACEN
Length = 324
Score = 99.8 bits (247), Expect = 1e-19
Identities = 50/131 (38%), Positives = 83/131 (63%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
+EE+A GL+++++ +L + P SLD +G ++ + I D E+ +E+ +I F
Sbjct: 192 DEELANEAGLTVEKVADLLDHSRDPVSLDMPVGAEEDAPLGDFIEDAESADAENAVISGF 251
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
++ DL +VL +L RE+ VIR R+G++DG+ +TL +IG+ G+SRERVRQIE KL+
Sbjct: 252 LQDDLRRVLSTLEEREQAVIRMRYGLDDGQPRTLDQIGKAFGLSRERVRQIEREVMSKLR 311
Query: 200 NKKRNNHLQQY 168
R + L+ Y
Sbjct: 312 QGDRADKLRAY 322
[243][TOP]
>UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus
DSM 20075 RepID=C9LZ42_LACHE
Length = 370
Score = 99.8 bits (247), Expect = 1e-19
Identities = 48/131 (36%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + ++ +L + P SL+ IG + + I D +A + E E +
Sbjct: 239 EEIGAEMNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEML 298
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VL++L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 299 KEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 358
Query: 197 KKRNNHLQQYL 165
R+N L+ ++
Sbjct: 359 PSRSNQLRDFM 369
[244][TOP]
>UniRef100_C7GZY7 RNA polymerase sigma factor RpoD n=1 Tax=Eubacterium saphenum ATCC
49989 RepID=C7GZY7_9FIRM
Length = 447
Score = 99.8 bits (247), Expect = 1e-19
Identities = 49/133 (36%), Positives = 84/133 (63%)
Frame = -2
Query: 563 KNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKE 384
K EEIA+ ++ +++ +L + P SL++ IG ++ + I D E + D+
Sbjct: 314 KPEEIAKEMDITTEKVRDILRISQEPVSLEKPIGEEEDSHLGDFIPDTEVPSPLDVAFSS 373
Query: 383 FMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKL 204
+R +L +VL++LG RE+ V++ RFG+ DG+ +TL+E+G+ V+RER+RQIES A RKL
Sbjct: 374 MLRDELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKL 433
Query: 203 KNKKRNNHLQQYL 165
K+ + L+ Y+
Sbjct: 434 KHPNMSKKLRDYI 446
[245][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 99.8 bits (247), Expect = 1e-19
Identities = 49/131 (37%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA+ L+ ++ ++ + P SL+ IG + + I D +A + E +
Sbjct: 194 EEIAKEMDLTPDKVREIMKIAQEPVSLETPIGEENDSNLGDFIEDHDAPAPAEAAAYELL 253
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VLD+L RE+ V+R RFGM+DGR +TL+E+G+ GV+RER+RQIE+ A RKL++
Sbjct: 254 KEQLEEVLDTLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRH 313
Query: 197 KKRNNHLQQYL 165
R+ L+ ++
Sbjct: 314 PSRSKRLKDFM 324
[246][TOP]
>UniRef100_C5VCH9 RNA polymerase sigma factor n=1 Tax=Corynebacterium matruchotii
ATCC 14266 RepID=C5VCH9_9CORY
Length = 365
Score = 99.8 bits (247), Expect = 1e-19
Identities = 49/131 (37%), Positives = 78/131 (59%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEE+AE +G+ ++ +L + P SLD +G ++ + I D EA +E ++
Sbjct: 233 NEELAEESGIDESKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEAADAESAVVASL 292
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
D+ V+ +L RE+ VIR R+G++DG +TL +IG G+SRERVRQIE RKL+
Sbjct: 293 RHSDIRDVIGTLEDREQDVIRMRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMRKLR 352
Query: 200 NKKRNNHLQQY 168
+ +R L++Y
Sbjct: 353 DGQRAEKLREY 363
[247][TOP]
>UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus
RepID=C2KFH9_9LACO
Length = 370
Score = 99.8 bits (247), Expect = 1e-19
Identities = 48/131 (36%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + ++ +L + P SL+ IG + + I D +A + E E +
Sbjct: 239 EEIGAEMNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEML 298
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VL++L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 299 KEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 358
Query: 197 KKRNNHLQQYL 165
R+N L+ ++
Sbjct: 359 PSRSNQLRDFM 369
[248][TOP]
>UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus
RepID=C2HPX4_LACAC
Length = 370
Score = 99.8 bits (247), Expect = 1e-19
Identities = 48/131 (36%), Positives = 83/131 (63%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEI + ++ +L + P SL+ IG + + I D +A + E E +
Sbjct: 239 EEIGAEMNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEML 298
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ L++VL++L RE+ V+R RFG++DGR +TL+E+G++ GV+RER+RQIE+ A RKL++
Sbjct: 299 KEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 358
Query: 197 KKRNNHLQQYL 165
R+N L+ ++
Sbjct: 359 PSRSNQLRDFM 369
[249][TOP]
>UniRef100_C0E2Q6 RNA polymerase sigma factor n=1 Tax=Corynebacterium matruchotii
ATCC 33806 RepID=C0E2Q6_9CORY
Length = 391
Score = 99.8 bits (247), Expect = 1e-19
Identities = 49/131 (37%), Positives = 78/131 (59%)
Frame = -2
Query: 560 NEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEF 381
NEE+AE +G+ ++ +L + P SLD +G ++ + I D EA +E ++
Sbjct: 259 NEELAEESGIDESKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEAADAESAVVASL 318
Query: 380 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 201
D+ V+ +L RE+ VIR R+G++DG +TL +IG G+SRERVRQIE RKL+
Sbjct: 319 RHSDIRDVIGTLEDREQDVIRMRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMRKLR 378
Query: 200 NKKRNNHLQQY 168
+ +R L++Y
Sbjct: 379 DGQRAEKLREY 389
[250][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 99.8 bits (247), Expect = 1e-19
Identities = 50/131 (38%), Positives = 82/131 (62%)
Frame = -2
Query: 557 EEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFM 378
EEIA + ++R+ +L + P SL+ IG ++ + I D + + +
Sbjct: 251 EEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLL 310
Query: 377 RQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 198
++ LD+VLD+L RE++V+R RFGM+DGR +TL+E+G+ V+RER+RQIE+ A RKL++
Sbjct: 311 KEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRH 370
Query: 197 KKRNNHLQQYL 165
R+ L+ YL
Sbjct: 371 PSRSRKLRDYL 381