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[1][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 259 bits (662), Expect = 7e-68
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE
Sbjct: 135 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENN HQVTLPFFPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFH 254
Query: 17 NRLVN 3
NRLVN
Sbjct: 255 NRLVN 259
[2][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 257 bits (656), Expect = 3e-67
Identities = 122/125 (97%), Positives = 124/125 (99%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHSYGNGNE
Sbjct: 135 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENN HQVTLPFFPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFH 254
Query: 17 NRLVN 3
NRLVN
Sbjct: 255 NRLVN 259
[3][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 254 bits (650), Expect = 2e-66
Identities = 121/125 (96%), Positives = 123/125 (98%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHSYGNGNE
Sbjct: 135 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENN HQVTLP FPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFH 254
Query: 17 NRLVN 3
NRLVN
Sbjct: 255 NRLVN 259
[4][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 254 bits (649), Expect = 2e-66
Identities = 121/125 (96%), Positives = 123/125 (98%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHSYGNGNE
Sbjct: 135 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEET YLENN HQVTLPFFPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYLENNQHQVTLPFFPFH 254
Query: 17 NRLVN 3
NRLVN
Sbjct: 255 NRLVN 259
[5][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 252 bits (643), Expect = 1e-65
Identities = 120/125 (96%), Positives = 122/125 (97%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHSYGNGNE
Sbjct: 135 HIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENN HQVTLP FPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFH 254
Query: 17 NRLVN 3
NRLVN
Sbjct: 255 NRLVN 259
[6][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 252 bits (643), Expect = 1e-65
Identities = 120/125 (96%), Positives = 122/125 (97%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHSYGNGNE
Sbjct: 135 HIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENN HQVTLP FPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFH 254
Query: 17 NRLVN 3
NRLVN
Sbjct: 255 NRLVN 259
[7][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 249 bits (637), Expect = 5e-65
Identities = 119/125 (95%), Positives = 121/125 (96%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATL EPIDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHSYGNGNE
Sbjct: 135 HIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENN HQVTLP FPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFH 254
Query: 17 NRLVN 3
NRLVN
Sbjct: 255 NRLVN 259
[8][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 247 bits (630), Expect = 3e-64
Identities = 117/125 (93%), Positives = 120/125 (96%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPIDLCI LKIERNRGYSLK+SNN EDRSYPIDAVFMPV+NANHSIHSYGNGNE
Sbjct: 135 HIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPVQNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENN HQVTLPFFPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFH 254
Query: 17 NRLVN 3
NR N
Sbjct: 255 NRFFN 259
[9][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 245 bits (626), Expect = 1e-63
Identities = 116/125 (92%), Positives = 122/125 (97%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPI+LCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHSYGNGNE
Sbjct: 135 HIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILF+EIWTNGSLTPKEAL++ASRNLINLFIPFLHVEEETFYLENN HQVTLP FPFH
Sbjct: 195 KQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYLENNQHQVTLPVFPFH 254
Query: 17 NRLVN 3
N+LVN
Sbjct: 255 NKLVN 259
[10][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 243 bits (620), Expect = 5e-63
Identities = 116/125 (92%), Positives = 120/125 (96%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIAT+TE IDLCI LKIERNRGYSLKMSNNFEDRSYPIDAVFMPV+NANHSIHSYGNGN
Sbjct: 135 HIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNG 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETF+LENN HQVTLP FPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHLENNQHQVTLPLFPFH 254
Query: 17 NRLVN 3
NRLVN
Sbjct: 255 NRLVN 259
[11][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 238 bits (607), Expect = 2e-61
Identities = 114/125 (91%), Positives = 117/125 (93%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTE IDLCI LKIERNRGYSLK+ N FEDRSYPIDAVFMPV+NANHSIHSYGNGN
Sbjct: 135 HIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPVQNANHSIHSYGNGNG 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLHVEEETFYLENN H VTLP FPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHHVTLPLFPFH 254
Query: 17 NRLVN 3
NRLVN
Sbjct: 255 NRLVN 259
[12][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 235 bits (600), Expect = 1e-60
Identities = 111/124 (89%), Positives = 118/124 (95%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPIDLCI L+IERNRGYSLKM N+FED SYPIDA+FMPV+NANHSIHSYG GNE
Sbjct: 135 HIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPVQNANHSIHSYGTGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYLENN H+VTLP FPFH
Sbjct: 195 KQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHKVTLPLFPFH 254
Query: 17 NRLV 6
NRLV
Sbjct: 255 NRLV 258
[13][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 229 bits (583), Expect = 1e-58
Identities = 109/124 (87%), Positives = 115/124 (92%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPIDLCI L+IERNRGYSLKM N FED SYPIDA+FMPV+NANHSIHSYG GNE
Sbjct: 135 HIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPVQNANHSIHSYGTGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QEILFLEIWTNG+LTPKEALH+ASRNLINLFIPFLHVEEETFYLENN +VTLP FPFH
Sbjct: 195 NQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNEDKVTLPLFPFH 254
Query: 17 NRLV 6
NRLV
Sbjct: 255 NRLV 258
[14][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 223 bits (567), Expect = 7e-57
Identities = 105/123 (85%), Positives = 113/123 (91%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDL I L+IERNRGY +K NNF+D SYPIDAVFMPV+NANHSIHSYG GNE
Sbjct: 135 HIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQNANHSIHSYGTGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLINLFIPFLH EEE FYLENN H+VTLPFFPFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLENNQHKVTLPFFPFH 254
Query: 17 NRL 9
+RL
Sbjct: 255 DRL 257
[15][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 216 bits (550), Expect = 6e-55
Identities = 101/124 (81%), Positives = 109/124 (87%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
H+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFMPV NANHSIH YGN NE
Sbjct: 137 HVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHCYGNDNE 196
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LENN H VTLPFFPFH
Sbjct: 197 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLENNQHDVTLPFFPFH 256
Query: 17 NRLV 6
+RLV
Sbjct: 257 DRLV 260
[16][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 215 bits (548), Expect = 1e-54
Identities = 100/123 (81%), Positives = 110/123 (89%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDLCI L+IERNRGY +K NNF D SYPID VFMPV N NHSIHSYGNGNE
Sbjct: 137 HIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPVRNVNHSIHSYGNGNE 196
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LEN+ H+VTLPFFPFH
Sbjct: 197 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHLENSQHKVTLPFFPFH 256
Query: 17 NRL 9
++L
Sbjct: 257 DKL 259
[17][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 210 bits (535), Expect = 4e-53
Identities = 99/123 (80%), Positives = 109/123 (88%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTE IDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV NANHS+HSYGNGNE
Sbjct: 135 HIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LE N H+VTLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPLFTFH 254
Query: 17 NRL 9
RL
Sbjct: 255 GRL 257
[18][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 210 bits (535), Expect = 4e-53
Identities = 99/123 (80%), Positives = 110/123 (89%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IA LTEPI+LCI L+IERNRGY +K NF+D SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 YIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +LENN ++VTLPFF FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQYKVTLPFFTFH 254
Query: 17 NRL 9
+RL
Sbjct: 255 DRL 257
[19][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 207 bits (528), Expect = 2e-52
Identities = 99/123 (80%), Positives = 108/123 (87%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 129 HIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 188
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE N H+ TLP FH
Sbjct: 189 RQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTLPPLTFH 248
Query: 17 NRL 9
+RL
Sbjct: 249 DRL 251
[20][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 207 bits (528), Expect = 2e-52
Identities = 99/123 (80%), Positives = 108/123 (87%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA L EPIDLCI L+IERNRGYS+K NNF+D SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE N H+ TLP FH
Sbjct: 195 RQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTLPPLTFH 254
Query: 17 NRL 9
+RL
Sbjct: 255 DRL 257
[21][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 207 bits (526), Expect = 4e-52
Identities = 98/123 (79%), Positives = 107/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPID CIEL+IERNRGY +K NN +D SYPIDAVFMPV NANHSIHSY NGNE
Sbjct: 135 HIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHSIHSYANGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH +EE LE+N + VTLPFF FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLEDNQNGVTLPFFTFH 254
Query: 17 NRL 9
+RL
Sbjct: 255 DRL 257
[22][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 204 bits (519), Expect = 3e-51
Identities = 97/123 (78%), Positives = 110/123 (89%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDLCIEL+IERNRGY +K NN ++RSYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWT+GSLTPKEAL++ASRNLI+LFIPFLH EE+ LE+N +VTLPFF FH
Sbjct: 195 KQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLEDNQSRVTLPFFTFH 254
Query: 17 NRL 9
+ L
Sbjct: 255 DGL 257
[23][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 204 bits (519), Expect = 3e-51
Identities = 96/123 (78%), Positives = 108/123 (87%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFMPV NANHS+HSYGNGNE
Sbjct: 135 HIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE+F+LE N H++TLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHLEKNQHKITLPLFAFH 254
Query: 17 NRL 9
+RL
Sbjct: 255 DRL 257
[24][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 204 bits (518), Expect = 3e-51
Identities = 96/123 (78%), Positives = 107/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+L EPIDL I L+IERNRGY +K NF+D SY IDAVFMPV NANHS+HSYGNGNE
Sbjct: 135 HIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE F+LE N H++TLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLEKNQHKITLPLFAFH 254
Query: 17 NRL 9
+RL
Sbjct: 255 DRL 257
[25][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 202 bits (515), Expect = 7e-51
Identities = 95/123 (77%), Positives = 106/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FMPV N NHSIHSY NGNE
Sbjct: 135 HIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSYVNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F LENN H+VTLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLPLFTFH 254
Query: 17 NRL 9
+ L
Sbjct: 255 DIL 257
[26][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 202 bits (515), Expect = 7e-51
Identities = 96/124 (77%), Positives = 106/124 (85%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPI+LC+ELK+ERNRGY +K NN +D SY IDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL +ASRNLI+LFIPFLH EE+ LENN +VTLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNLENNQQKVTLPLFTFH 254
Query: 17 NRLV 6
+R V
Sbjct: 255 DRFV 258
[27][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 202 bits (515), Expect = 7e-51
Identities = 95/123 (77%), Positives = 106/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA +TEP++LCIELKIERNRGY +K NF+D SYPIDA FMPV N NHSIHSY NGNE
Sbjct: 135 HIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSYVNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ F LENN H+VTLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLPLFTFH 254
Query: 17 NRL 9
+ L
Sbjct: 255 DIL 257
[28][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 202 bits (515), Expect = 7e-51
Identities = 95/123 (77%), Positives = 108/123 (87%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++N H V L F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFH 254
Query: 17 NRL 9
++L
Sbjct: 255 DKL 257
[29][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 202 bits (514), Expect = 1e-50
Identities = 95/123 (77%), Positives = 107/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPID CI L+IERNRGY +K NF+D SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++N H V L F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFH 254
Query: 17 NRL 9
++L
Sbjct: 255 DKL 257
[30][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 202 bits (513), Expect = 1e-50
Identities = 98/124 (79%), Positives = 107/124 (86%), Gaps = 1/124 (0%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSIHSYGNGN 201
HIA+L EPIDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV NANHSIHSYGNGN
Sbjct: 135 HIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSIHSYGNGN 194
Query: 200 EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPF 21
EKQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH EEE +L +N H V LP F F
Sbjct: 195 EKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLHLADNQHTVPLPPFTF 254
Query: 20 HNRL 9
H +L
Sbjct: 255 HEKL 258
[31][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 202 bits (513), Expect = 1e-50
Identities = 95/125 (76%), Positives = 109/125 (87%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHSIHSYGN NE
Sbjct: 135 HIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNRNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE+N ++ T+P F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVLEDNPNRFTVPLFTFH 254
Query: 17 NRLVN 3
+RL N
Sbjct: 255 DRLAN 259
[32][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 202 bits (513), Expect = 1e-50
Identities = 98/125 (78%), Positives = 106/125 (84%), Gaps = 1/125 (0%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
H+A+LTEPIDLCI L+IERNRGY +K NF D SYPIDAVFMPV NANHSIH YGN NE
Sbjct: 137 HVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHCYGNDNE 196
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLP-FFPF 21
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFI FLH +EE +LENN H VTL FFPF
Sbjct: 197 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHLENNQHDVTLHFFFPF 256
Query: 20 HNRLV 6
H RLV
Sbjct: 257 HYRLV 261
[33][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 202 bits (513), Expect = 1e-50
Identities = 95/123 (77%), Positives = 107/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDLCI L+IERNRGY++K N +D YPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE F L++N ++V LP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFILKDNQNKVALPLFTFH 254
Query: 17 NRL 9
+RL
Sbjct: 255 DRL 257
[34][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 201 bits (511), Expect = 2e-50
Identities = 96/124 (77%), Positives = 106/124 (85%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFMPV NANHSIHSY NGNE
Sbjct: 135 HIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENN H+VTLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKVTLPLFTFH 254
Query: 17 NRLV 6
+RL+
Sbjct: 255 DRLL 258
[35][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 201 bits (511), Expect = 2e-50
Identities = 94/123 (76%), Positives = 107/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+ YL++N H V L F FH
Sbjct: 195 KQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFH 254
Query: 17 NRL 9
++L
Sbjct: 255 DKL 257
[36][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 201 bits (511), Expect = 2e-50
Identities = 94/123 (76%), Positives = 107/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPID CI L+IERNRGY +K +NF+D SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILF+EIWTNGSLTPKEALH ASRNLI+LFIPFLH+EE+ YL++N H V L F FH
Sbjct: 195 KQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFH 254
Query: 17 NRL 9
++L
Sbjct: 255 DKL 257
[37][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 201 bits (510), Expect = 3e-50
Identities = 95/123 (77%), Positives = 107/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEP DLCI L+IERNRGY +K N ++ SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE+N ++VTLPFF FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIILEDNQNRVTLPFFTFH 254
Query: 17 NRL 9
+ L
Sbjct: 255 DGL 257
[38][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 200 bits (508), Expect = 5e-50
Identities = 94/124 (75%), Positives = 108/124 (87%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPIDL IEL++ERNRGY +K NNF+D SYPID VFMPV N NHSIHSY NGNE
Sbjct: 135 HIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVRNVNHSIHSYSNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFL+ E+E F+LE+N +VTLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLEDNQDRVTLPLFLFH 254
Query: 17 NRLV 6
+RL+
Sbjct: 255 DRLI 258
[39][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 199 bits (507), Expect = 6e-50
Identities = 94/123 (76%), Positives = 104/123 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFMPV NANHSIHSYGN NE
Sbjct: 135 HIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSYGNQNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE +L NN + VT P F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGNNKYNVTFPLFTFH 254
Query: 17 NRL 9
+L
Sbjct: 255 KKL 257
[40][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 199 bits (507), Expect = 6e-50
Identities = 95/125 (76%), Positives = 107/125 (85%), Gaps = 2/125 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA L EPI+LCIELKIERNRGY ++ NNF+D SYP+DA+FMPV N NHSIHSY NGNE
Sbjct: 135 HIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE--ETFYLENNHHQVTLPFFP 24
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE E F+L+NN +VTLP F
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKVTLPLFT 254
Query: 23 FHNRL 9
FH +L
Sbjct: 255 FHEKL 259
[41][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 199 bits (506), Expect = 8e-50
Identities = 96/124 (77%), Positives = 108/124 (87%), Gaps = 1/124 (0%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSIHSYGNGN 201
HIA+LTEPI+LCI L+IERNRGY +K +NN +D SYPIDAVFMPV NANHSIHSYGNGN
Sbjct: 135 HIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRNANHSIHSYGNGN 194
Query: 200 EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPF 21
+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L NN H V LP F F
Sbjct: 195 DKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLANNQHMVPLPPFTF 254
Query: 20 HNRL 9
H++L
Sbjct: 255 HDKL 258
[42][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 199 bits (505), Expect = 1e-49
Identities = 93/123 (75%), Positives = 107/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTE ID CI L+I+RNRGY +K +NF+D SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EE+ YL++N H V L F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHTVPLSPFTFH 254
Query: 17 NRL 9
++L
Sbjct: 255 DKL 257
[43][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 198 bits (504), Expect = 1e-49
Identities = 94/125 (75%), Positives = 105/125 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPIDLCI L+IER+RGY LK NN++D SYPID VFMPV NANHSIHSYGNG E
Sbjct: 135 HIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPVRNANHSIHSYGNGTE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLINLFIPFLH EE+ LE++ + T+P F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILLEDSENISTVPLFTFH 254
Query: 17 NRLVN 3
N L N
Sbjct: 255 NELAN 259
[44][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 198 bits (503), Expect = 2e-49
Identities = 93/125 (74%), Positives = 107/125 (85%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEP+DLCIELKIER RGY ++ NN++D SYPIDAV MPV NANHSIHSYGNGNE
Sbjct: 135 HIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ +E+N + T+PFF FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINIEDNLKRATVPFFTFH 254
Query: 17 NRLVN 3
+ L N
Sbjct: 255 DGLDN 259
[45][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 198 bits (503), Expect = 2e-49
Identities = 95/123 (77%), Positives = 106/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDLCI L+I+RNRGY +KM +NF+D SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 109 HIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 168
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEE LE+N H V L FH
Sbjct: 169 KQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDNQHTVPLSPLTFH 228
Query: 17 NRL 9
++L
Sbjct: 229 DKL 231
[46][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 198 bits (503), Expect = 2e-49
Identities = 94/123 (76%), Positives = 107/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDLCI L++ERNRGY +K NNF+D S+PIDA+FMPV N NHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH EE LE+N H+V+LP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEENV-NLEDNQHKVSLPLFTFH 253
Query: 17 NRL 9
NRL
Sbjct: 254 NRL 256
[47][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 198 bits (503), Expect = 2e-49
Identities = 93/125 (74%), Positives = 108/125 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDLCIEL+I+R+RGY +K N +++ SYPIDAV MPV NANHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE LE+N ++ +PFF FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRLEDNPNRFNIPFFTFH 254
Query: 17 NRLVN 3
+ L N
Sbjct: 255 DGLAN 259
[48][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 197 bits (502), Expect = 2e-49
Identities = 94/123 (76%), Positives = 105/123 (85%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPID CI L+IERNRGY LK +NFED SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ H + L FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDGEHTIPLSPLSFH 254
Query: 17 NRL 9
+++
Sbjct: 255 DKV 257
[49][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 197 bits (501), Expect = 3e-49
Identities = 93/123 (75%), Positives = 103/123 (83%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+L EPI LCI L+IERNRGY +K NNF+D SYPIDAVFMPV NANHSIHSYGN NE
Sbjct: 135 HIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSYGNQNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EEE +L N + VT P F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGKNKYNVTFPLFTFH 254
Query: 17 NRL 9
+L
Sbjct: 255 KKL 257
[50][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 197 bits (501), Expect = 3e-49
Identities = 96/123 (78%), Positives = 104/123 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPI LCIEL+IERNRGY +K NNF++ SYPIDAVFMPV NANHSIHSY NGNE
Sbjct: 135 HIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHSIHSYVNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPF H EE +LENN H+ TLP F FH
Sbjct: 195 NQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HLENNQHKGTLPLFNFH 251
Query: 17 NRL 9
RL
Sbjct: 252 GRL 254
[51][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 197 bits (501), Expect = 3e-49
Identities = 94/123 (76%), Positives = 106/123 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA L EPI+LCI L+IERNRGY +K NF+D SYPIDAVFMP+ NAN+SIHSYGNGNE
Sbjct: 135 HIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPIRNANYSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALHQASRNLI+LFIPFLH+EE+ +LENN H V L F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHLENNQHTVPLAPFFFH 254
Query: 17 NRL 9
++L
Sbjct: 255 DKL 257
[52][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 196 bits (499), Expect = 5e-49
Identities = 94/125 (75%), Positives = 105/125 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPIDLCIEL+I+R+RGY +K +NN +D SYPIDAV MPV NANHSIHSYGNGNE
Sbjct: 135 HIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N ++ LP F F
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFPLPLFTFQ 254
Query: 17 NRLVN 3
NRL N
Sbjct: 255 NRLTN 259
[53][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 196 bits (497), Expect = 9e-49
Identities = 93/125 (74%), Positives = 108/125 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEP+DL I L+I+R+RGY ++ +NN +D SYPIDAVFMPV NANHSI+SYGNGNE
Sbjct: 135 HIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVRNANHSIYSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ LE N + TLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLEENKSRFTLPLFTFH 254
Query: 17 NRLVN 3
++LVN
Sbjct: 255 DKLVN 259
[54][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 195 bits (496), Expect = 1e-48
Identities = 94/122 (77%), Positives = 105/122 (86%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDLCI L+IERNRGY +KM +N +D SYPIDAVFMPV NANHSIHSYG+GNE
Sbjct: 135 HIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVRNANHSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
K EILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EEET LE+NHH V L FH
Sbjct: 195 KHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLEDNHHTVPLSPLTFH 254
Query: 17 NR 12
++
Sbjct: 255 DK 256
[55][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 195 bits (495), Expect = 2e-48
Identities = 92/121 (76%), Positives = 103/121 (85%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPI+LCIEL+IER RGY +K NN +D SY IDAVFMPV NANHSIHSY NGN+
Sbjct: 134 HIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNQ 193
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENN H++TLP F FH
Sbjct: 194 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKMTLPLFTFH 253
Query: 17 N 15
+
Sbjct: 254 D 254
[56][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 194 bits (493), Expect = 3e-48
Identities = 92/124 (74%), Positives = 104/124 (83%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA +TEP+ LCIELKIERNRGY +K NF+D SY IDA FMPV N N+SIHSY NGNE
Sbjct: 135 HIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSYVNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++AS+NLI LFIPFLH EE+ F+LE N H+VTLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHLEKNQHKVTLPLFTFH 254
Query: 17 NRLV 6
+ LV
Sbjct: 255 DILV 258
[57][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 194 bits (493), Expect = 3e-48
Identities = 90/125 (72%), Positives = 107/125 (85%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IA+LTEPIDLCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHSIHSYGNGNE
Sbjct: 135 YIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGS TPKEAL++ASRNLI+LF+PFLH EE+ +E+N ++ T P F FH
Sbjct: 195 KQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINVEDNQNRATAPLFTFH 254
Query: 17 NRLVN 3
+ L N
Sbjct: 255 DGLTN 259
[58][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 194 bits (492), Expect = 3e-48
Identities = 95/127 (74%), Positives = 108/127 (85%), Gaps = 4/127 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFE--DRSYPIDAVFMPVENANHSIHSYGNG 204
HIA+LT+ IDLCI L+IERNRGY +K +NNF+ D SY IDAVFMPV NANHS+HSYGNG
Sbjct: 135 HIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMPVRNANHSVHSYGNG 194
Query: 203 NEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL--ENNHHQVTLPF 30
NEKQEILFLEIWTNGSLTPKEALH+ASRNLI+ FIPFLH EEE +L E N H+VTLP
Sbjct: 195 NEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLHLEIEKNQHKVTLPL 254
Query: 29 FPFHNRL 9
F FH++L
Sbjct: 255 FCFHDKL 261
[59][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 193 bits (490), Expect = 6e-48
Identities = 94/124 (75%), Positives = 108/124 (87%), Gaps = 1/124 (0%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS-YPIDAVFMPVENANHSIHSYGNGN 201
HIA+LTEPIDL I L+IER+RGY++K N F+D + YPIDAVFMPV NANHSI SYGNGN
Sbjct: 135 HIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMPVRNANHSIQSYGNGN 194
Query: 200 EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPF 21
EKQEILFLEIWTNGSLTPKEALH+ASR+LI+LFIPFL E+E LENN ++VTLPFF F
Sbjct: 195 EKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLPLENNQYKVTLPFFTF 254
Query: 20 HNRL 9
H+RL
Sbjct: 255 HDRL 258
[60][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 192 bits (488), Expect = 1e-47
Identities = 92/124 (74%), Positives = 104/124 (83%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA +TEP++LCIELKIERNRGY +K NF+D SY IDA FMPV N N+SIHSY NGNE
Sbjct: 135 HIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSYVNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++AS+NLI+LFIPFLH EEE F LE H+VTLP F FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNLEKKKHKVTLPLFTFH 254
Query: 17 NRLV 6
+ LV
Sbjct: 255 DILV 258
[61][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 191 bits (484), Expect = 3e-47
Identities = 92/125 (73%), Positives = 105/125 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPIDL IEL+I+R+RGY ++ +NN +D SYPIDAV MPV NANHSIHSYGNGNE
Sbjct: 135 HIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N ++ TLPF F
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFTLPFLTFQ 254
Query: 17 NRLVN 3
+RL N
Sbjct: 255 DRLTN 259
[62][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 191 bits (484), Expect = 3e-47
Identities = 92/125 (73%), Positives = 104/125 (83%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPIDL IEL+I+R+RGY + +NN +D SYPIDAV MPV NANHSIHSYGNGNE
Sbjct: 133 HIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNE 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE + E N ++ TLP F F
Sbjct: 193 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHFEENKNRFTLPLFTFQ 252
Query: 17 NRLVN 3
NRL N
Sbjct: 253 NRLTN 257
[63][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 191 bits (484), Expect = 3e-47
Identities = 91/125 (72%), Positives = 105/125 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV NANHSIHSYGNGN+
Sbjct: 135 HIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQ 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE E N ++ T+P F F
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVPPFTFP 254
Query: 17 NRLVN 3
+RL N
Sbjct: 255 DRLAN 259
[64][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 191 bits (484), Expect = 3e-47
Identities = 91/125 (72%), Positives = 105/125 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPIDLCI L+I+R+RGY +K + N +D SYPIDAV MPV NANHSIHSYGNGN+
Sbjct: 135 HIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQ 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE E N ++ T+P F F
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVPPFTFP 254
Query: 17 NRLVN 3
+RL N
Sbjct: 255 DRLAN 259
[65][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 190 bits (482), Expect = 5e-47
Identities = 92/127 (72%), Positives = 109/127 (85%), Gaps = 2/127 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPI+LCIEL+IER+RGY +K NN++D SYPIDAV MPV NANHSIHSYG+GNE
Sbjct: 135 HIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNANHSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNHHQVTLPFFP 24
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE+ + LE+N ++ T+ F
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNRFTVSPFT 254
Query: 23 FHNRLVN 3
H+RL N
Sbjct: 255 LHDRLGN 261
[66][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 189 bits (479), Expect = 1e-46
Identities = 91/125 (72%), Positives = 104/125 (83%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IA LTEPIDLCIEL+I+R+RGY +K N +D SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 YIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ TLP F
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINFEENKNKFTLPPLTFQ 254
Query: 17 NRLVN 3
+RL N
Sbjct: 255 DRLSN 259
[67][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 188 bits (478), Expect = 1e-46
Identities = 88/121 (72%), Positives = 104/121 (85%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTE +DLCI+L+IER+RGYS+K +N ED SYPIDA+FMPV NANHS+HSYGNGNE
Sbjct: 135 HIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPVRNANHSVHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILF+EIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +LE+N + V L F FH
Sbjct: 195 KQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHLEDNANGVPLALFTFH 254
Query: 17 N 15
+
Sbjct: 255 D 255
[68][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 188 bits (477), Expect = 2e-46
Identities = 93/126 (73%), Positives = 107/126 (84%), Gaps = 3/126 (2%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKM-SNNFEDRSYPIDAVFMPVENANHSIHSYGNGN 201
HIA+LTEPI+L I L+IER+RGY +K +NNF+D SYPIDAVFMP+ NANHSIHSYGNGN
Sbjct: 135 HIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRNANHSIHSYGNGN 194
Query: 200 --EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFF 27
+KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE +L +N H V LP F
Sbjct: 195 GNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLADNQHMVPLPPF 254
Query: 26 PFHNRL 9
FH+ L
Sbjct: 255 TFHDNL 260
[69][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 188 bits (477), Expect = 2e-46
Identities = 90/123 (73%), Positives = 101/123 (82%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV NANHSIHSY NGNE
Sbjct: 135 HIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENN H+VTLP F H
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCH 254
Query: 17 NRL 9
+ L
Sbjct: 255 DLL 257
[70][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 187 bits (476), Expect = 2e-46
Identities = 91/127 (71%), Positives = 105/127 (82%), Gaps = 2/127 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEP+DLCIELKIER RGY + NN++D SYPIDAV MPV NANHSIHSYGNGNE
Sbjct: 135 HIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF--YLENNHHQVTLPFFP 24
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ +E+N + ++PFF
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINRNMEDNLKRASVPFFA 254
Query: 23 FHNRLVN 3
F + L N
Sbjct: 255 FDDGLDN 261
[71][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 187 bits (475), Expect = 3e-46
Identities = 93/127 (73%), Positives = 107/127 (84%), Gaps = 2/127 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPI--DAVFMPVENANHSIHSYGNG 204
HIA+LTEPIDLCI L+IER+RGY +K NN +D SYPI +AV MPV NANHSIHSYGNG
Sbjct: 135 HIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSMPVRNANHSIHSYGNG 194
Query: 203 NEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFP 24
NEKQEILFLEIWTNGSLTPKEALH+AS NLI+LFIPFLH EEE LE++ ++ TLPFF
Sbjct: 195 NEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDINLEDSLNRGTLPFFT 254
Query: 23 FHNRLVN 3
F ++L N
Sbjct: 255 FQDKLAN 261
[72][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 186 bits (473), Expect = 5e-46
Identities = 90/125 (72%), Positives = 102/125 (81%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPIDLCI L+I R+RGY K + N ++ SYPIDAV MPV NANHSIHSYGNGNE
Sbjct: 135 HIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE + N ++ TLP F F
Sbjct: 195 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFKENKNRFTLPIFTFQ 254
Query: 17 NRLVN 3
+RL N
Sbjct: 255 DRLTN 259
[73][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 186 bits (472), Expect = 7e-46
Identities = 92/126 (73%), Positives = 105/126 (83%), Gaps = 2/126 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDA--VFMPVENANHSIHSYGNG 204
HIA LTEPI+LCIEL+IER RGY K +N +D SY ID VFMPV +AN+SIHSY N
Sbjct: 135 HIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFMPVIHANYSIHSYLNA 194
Query: 203 NEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFP 24
NEKQEILFLEIWTNGSLTPKEAL++A+RNLI+LFIPFLH EEE F+ ENN H+VTLP F
Sbjct: 195 NEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENFHFENNQHKVTLPLFA 254
Query: 23 FHNRLV 6
FH+RLV
Sbjct: 255 FHDRLV 260
[74][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 186 bits (472), Expect = 7e-46
Identities = 92/123 (74%), Positives = 104/123 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV NANHSIHSY GNE
Sbjct: 135 HIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPVRNANHSIHSY--GNE 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ H ++L F +
Sbjct: 193 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTISLSPFTVY 252
Query: 17 NRL 9
+++
Sbjct: 253 DKV 255
[75][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 186 bits (471), Expect = 9e-46
Identities = 90/122 (73%), Positives = 103/122 (84%), Gaps = 1/122 (0%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEP+D CI L+IE NRGY +K NN + SYPIDAVFMPV NANHSIHSYGNGNE
Sbjct: 135 HIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNH-HQVTLPFFPF 21
QEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE+ L++N + VTLPFF F
Sbjct: 195 NQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLKDNQKNGVTLPFFTF 254
Query: 20 HN 15
H+
Sbjct: 255 HD 256
[76][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 184 bits (468), Expect = 2e-45
Identities = 92/123 (74%), Positives = 101/123 (82%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA L EPIDLCI L+IERNRGY+ SYPIDAVFMPV NANHSIHSYGNG+E
Sbjct: 135 HIARLMEPIDLCIGLQIERNRGYN---------GSYPIDAVFMPVRNANHSIHSYGNGSE 185
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+QEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEET +LE N H+ TLP FH
Sbjct: 186 RQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKGTLPPLTFH 245
Query: 17 NRL 9
+RL
Sbjct: 246 DRL 248
[77][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 183 bits (465), Expect = 5e-45
Identities = 93/119 (78%), Positives = 101/119 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV+NANHSIHSY GNE
Sbjct: 135 HIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNE 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPF 21
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E LE+ H T+P PF
Sbjct: 193 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADH--TIPLSPF 249
[78][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 183 bits (465), Expect = 5e-45
Identities = 88/118 (74%), Positives = 100/118 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPI+LCI L+IERNRGY +K + NF+D SYPIDAVFMPV N NHSI+SYG GN+
Sbjct: 135 HIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPVRNVNHSIYSYGTGND 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFP 24
K EILFLEIWTNGSLTPKEALH+A+RNLI+LFIPFLH EEE LE+N H LPF P
Sbjct: 195 KHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDLEDNQHM--LPFRP 250
[79][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 183 bits (465), Expect = 5e-45
Identities = 93/119 (78%), Positives = 101/119 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPIDLCI LKIERNRGY +K NFED SYPIDAVFMPV+NANHSIHSY GNE
Sbjct: 135 HIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNE 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPF 21
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E LE+ H T+P PF
Sbjct: 193 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADH--TIPLSPF 249
[80][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 181 bits (460), Expect = 2e-44
Identities = 92/119 (77%), Positives = 100/119 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA L EPIDLCI LKIERNRGY LK NFED SYPIDAVFMPV+NANHSIHSY GNE
Sbjct: 135 HIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNE 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPF 21
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+E+E +LE+ T+P PF
Sbjct: 193 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHLEDADR--TIPLSPF 249
[81][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 180 bits (457), Expect = 4e-44
Identities = 90/123 (73%), Positives = 99/123 (80%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPI CI L+IER+RGY +K + F+DRSYPIDAVFMPV N NHSIHSYGN E
Sbjct: 120 HIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNVNHSIHSYGN--E 177
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE LENN V+ F FH
Sbjct: 178 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLENNQDTVSFSPFSFH 237
Query: 17 NRL 9
+L
Sbjct: 238 EKL 240
[82][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 179 bits (454), Expect = 9e-44
Identities = 85/125 (68%), Positives = 101/125 (80%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPI+LCIEL+I+R+RGY +K +N+ D SYPID V MPV NANHSIHSYGNGNE
Sbjct: 135 HIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNANHSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILF+EIWTNGSLTPKEAL++ASRNLI+L IPFLH EEE + N ++ LP F F
Sbjct: 195 KQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNFKENENRWNLPPFSFQ 254
Query: 17 NRLVN 3
++ N
Sbjct: 255 DKFTN 259
[83][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 179 bits (453), Expect = 1e-43
Identities = 87/123 (70%), Positives = 101/123 (82%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIATLTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIHSY NGN
Sbjct: 135 HIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGN- 193
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+N H + LP F F+
Sbjct: 194 -KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHMIPLPPFTFY 252
Query: 17 NRL 9
++L
Sbjct: 253 DKL 255
[84][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 176 bits (447), Expect = 6e-43
Identities = 87/123 (70%), Positives = 101/123 (82%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIHSY NGN+
Sbjct: 135 HIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGNK 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+N H V LP F F+
Sbjct: 195 --EILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHIVPLPPFTFY 252
Query: 17 NRL 9
++L
Sbjct: 253 DKL 255
[85][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 176 bits (447), Expect = 6e-43
Identities = 87/123 (70%), Positives = 101/123 (82%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIHSY NGN+
Sbjct: 135 HIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGNK 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
EILFLEIWTNGSLTPKEALH+ASRNLI+L IPFLH +EE LE+N H V LP F F+
Sbjct: 195 --EILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSLEDNQHIVPLPPFTFY 252
Query: 17 NRL 9
++L
Sbjct: 253 DKL 255
[86][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 175 bits (443), Expect = 2e-42
Identities = 86/123 (69%), Positives = 100/123 (81%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPI+L I L+IE+NRGY +K N F+D SYPID VFMPV NANHSIHSY NGN
Sbjct: 135 HIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGN- 193
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+EILFLEIWTNGSLTPKEAL++ASRNLI+L IPFLH +EE LE N H V LP F F+
Sbjct: 194 -KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNLEGNQHMVPLPPFTFY 252
Query: 17 NRL 9
++L
Sbjct: 253 DKL 255
[87][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 173 bits (439), Expect = 5e-42
Identities = 84/123 (68%), Positives = 100/123 (81%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA++TEPI+ CI L+IERNRGY + +N +D SYPIDAV MPV NAN+SI YGN NE
Sbjct: 135 HIASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSMPVRNANYSIQCYGNENE 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EE +L+++ + T PFFPFH
Sbjct: 193 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHLDDDQNIFTAPFFPFH 252
Query: 17 NRL 9
L
Sbjct: 253 EGL 255
[88][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 172 bits (437), Expect = 8e-42
Identities = 88/119 (73%), Positives = 98/119 (82%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPI+ I LKIERN GY +K NFED SYPIDA+FMPV NANHSI+SYGN E
Sbjct: 135 HIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPVRNANHSINSYGN--E 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPF 21
KQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH+EEE +LE+ H T+P PF
Sbjct: 193 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADH--TIPLSPF 249
[89][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 172 bits (436), Expect = 1e-41
Identities = 85/125 (68%), Positives = 97/125 (77%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPIDLCIEL+I+R+RGY + N +D SYPIDAV MPV N N+SI+S GN NE
Sbjct: 135 HIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVRNVNYSIYSCGNENE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
K EILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE E N ++ TLP F
Sbjct: 195 KYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNFEENKNRFTLPLLTFQ 254
Query: 17 NRLVN 3
RL N
Sbjct: 255 KRLTN 259
[90][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 172 bits (436), Expect = 1e-41
Identities = 83/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 141 IANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 200
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 201 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 260
Query: 14 RLVN 3
RL N
Sbjct: 261 RLTN 264
[91][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 172 bits (436), Expect = 1e-41
Identities = 83/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[92][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 172 bits (436), Expect = 1e-41
Identities = 83/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CIEL+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[93][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 171 bits (434), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[94][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 171 bits (434), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[95][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[96][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[97][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[98][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[99][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[100][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[101][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[102][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[103][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[104][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[105][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[106][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[107][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[108][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[109][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[110][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[111][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[112][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 171 bits (432), Expect = 3e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[113][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 171 bits (432), Expect = 3e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[114][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 171 bits (432), Expect = 3e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNLNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[115][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 171 bits (432), Expect = 3e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFKK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[116][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 171 bits (432), Expect = 3e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFKK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[117][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 169 bits (429), Expect = 7e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPPFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[118][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 169 bits (428), Expect = 9e-41
Identities = 82/124 (66%), Positives = 97/124 (78%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPPFTFKK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[119][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 169 bits (427), Expect = 1e-40
Identities = 81/124 (65%), Positives = 96/124 (77%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA L EPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[120][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 169 bits (427), Expect = 1e-40
Identities = 81/124 (65%), Positives = 96/124 (77%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDA MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[121][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 167 bits (424), Expect = 3e-40
Identities = 81/124 (65%), Positives = 96/124 (77%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV MPV N N+SI S GNG EK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGIEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[122][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 167 bits (424), Expect = 3e-40
Identities = 82/124 (66%), Positives = 95/124 (76%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLLTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[123][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 167 bits (423), Expect = 3e-40
Identities = 83/123 (67%), Positives = 98/123 (79%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FMPV+NANHSIHSYGN E
Sbjct: 135 HIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHSYGN--E 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE YL + H + LP F+
Sbjct: 193 KQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIXLPPLIFY 252
Query: 17 NRL 9
N++
Sbjct: 253 NKV 255
[124][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 167 bits (423), Expect = 3e-40
Identities = 83/123 (67%), Positives = 98/123 (79%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPID I LKIERNRGY K+ +F+D SYPIDA+FMPV+NANHSIHSYGN E
Sbjct: 135 HIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHSYGN--E 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+++R LI+ FIPF +EEE YL + H + LP F+
Sbjct: 193 KQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIPLPPLIFY 252
Query: 17 NRL 9
N++
Sbjct: 253 NKV 255
[125][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 167 bits (423), Expect = 3e-40
Identities = 83/123 (67%), Positives = 97/123 (78%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LTEPID I LKIERNRGY K+ +F+D YPIDA+FMPV+NANHSIHSYGN E
Sbjct: 135 HIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPVQNANHSIHSYGN--E 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+A+R LI+ FIPF H+EEE YL + H + L F+
Sbjct: 193 KQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYLADAEHTIPLSSLIFY 252
Query: 17 NRL 9
N++
Sbjct: 253 NKV 255
[126][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 167 bits (422), Expect = 4e-40
Identities = 80/124 (64%), Positives = 95/124 (76%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+SI S GNGNEK
Sbjct: 136 IANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E N +++T P F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTPPLLTFQK 255
Query: 14 RLVN 3
R N
Sbjct: 256 RFTN 259
[127][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 166 bits (421), Expect = 6e-40
Identities = 79/124 (63%), Positives = 95/124 (76%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA L EP+D CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+SI S GNGNEK
Sbjct: 136 IANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E N +++T P F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTPPLLTFQK 255
Query: 14 RLVN 3
R N
Sbjct: 256 RFTN 259
[128][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 166 bits (421), Expect = 6e-40
Identities = 80/124 (64%), Positives = 95/124 (76%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPI V MPV N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[129][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 166 bits (419), Expect = 1e-39
Identities = 80/124 (64%), Positives = 95/124 (76%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CI+L+I+R+RGY ++ N++D SYPIDAV M V N N+SI S GNGNEK
Sbjct: 136 IANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLLTFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[130][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 166 bits (419), Expect = 1e-39
Identities = 81/116 (69%), Positives = 95/116 (81%), Gaps = 3/116 (2%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
HI TLTEPID C+ L+IERNRGYS+K+ +N+ +DR YPIDAVFMPV+N NHSIH+Y N
Sbjct: 135 HIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVFMPVKNVNHSIHAYEN 194
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVT 39
G+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE +LENN +Q T
Sbjct: 195 GSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENSHLENNQNQHT 248
[131][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 165 bits (417), Expect = 2e-39
Identities = 79/124 (63%), Positives = 95/124 (76%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA L EPID CIEL+I+R+RGY ++ N +D SYPIDAVFMPV N N+SI S GNGNEK
Sbjct: 136 IANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PF+H EEE E + +++T P F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEESKNRLTPPLLTFQK 255
Query: 14 RLVN 3
R N
Sbjct: 256 RFTN 259
[132][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 165 bits (417), Expect = 2e-39
Identities = 79/124 (63%), Positives = 94/124 (75%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA L EP+D CIEL+I+R+R Y ++ N +D SYPIDAVFMPV N N+SI S GNGNEK
Sbjct: 136 IANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N +++T P F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSFEENKNRLTPPLLTFQK 255
Query: 14 RLVN 3
R N
Sbjct: 256 RFTN 259
[133][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 164 bits (415), Expect = 3e-39
Identities = 80/124 (64%), Positives = 94/124 (75%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEPID CIEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI GNGNEK
Sbjct: 136 IANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFYCGNGNEK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE E N ++ T P F
Sbjct: 196 HEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLLTFQK 255
Query: 14 RLVN 3
+L N
Sbjct: 256 KLTN 259
[134][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 164 bits (415), Expect = 3e-39
Identities = 83/116 (71%), Positives = 94/116 (81%), Gaps = 3/116 (2%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLK--MSNNF-EDRSYPIDAVFMPVENANHSIHSYGN 207
HI TLTEPID CI L+I+RNRGYS K M NF +DR YPIDAVF+PV+N NHSIHSY N
Sbjct: 135 HIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVFLPVKNVNHSIHSYEN 194
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVT 39
G+ E+LFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE F+ ENN ++ T
Sbjct: 195 GSH--EMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFHFENNQNEHT 248
[135][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 163 bits (412), Expect = 6e-39
Identities = 81/119 (68%), Positives = 98/119 (82%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPI+LCI LKIERNRGY +K F++ +Y +DAVFMPV N NHSI+SYGN E
Sbjct: 135 HIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPVLNVNHSIYSYGN--E 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPF 21
K+EILFLEIWTNGSLTPKEALH+A++NL++LFIPFL +EEE LE+ HQ+ PF PF
Sbjct: 193 KKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNLEDAEHQI--PFSPF 249
[136][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 159 bits (402), Expect = 9e-38
Identities = 77/114 (67%), Positives = 93/114 (81%), Gaps = 3/114 (2%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKM---SNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
HI TLTEPI+ C+ L+IERNRGYSL++ +N+ ++R YPIDAVFMPV+N NHSIHSY N
Sbjct: 135 HIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVFMPVKNVNHSIHSYEN 194
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQ 45
G+ E+LF EIWTNGSLTPKEAL +ASR LINLFIPFLH EEE + ENN ++
Sbjct: 195 GSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEKPHFENNQNE 246
[137][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 158 bits (400), Expect = 2e-37
Identities = 78/124 (62%), Positives = 93/124 (75%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP+D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI S GNGN K
Sbjct: 116 IANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNVNYSIFSCGNGNAK 175
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 176 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQK 235
Query: 14 RLVN 3
RL N
Sbjct: 236 RLTN 239
[138][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 158 bits (399), Expect = 2e-37
Identities = 78/124 (62%), Positives = 92/124 (74%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI S GNGN K
Sbjct: 116 IANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAK 175
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 176 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENQNRFTSPLLSFQK 235
Query: 14 RLVN 3
RL N
Sbjct: 236 RLTN 239
[139][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 157 bits (398), Expect = 3e-37
Identities = 78/124 (62%), Positives = 92/124 (74%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI S GNGN K
Sbjct: 116 IANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAK 175
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 176 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQK 235
Query: 14 RLVN 3
RL N
Sbjct: 236 RLTN 239
[140][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 157 bits (396), Expect = 5e-37
Identities = 78/124 (62%), Positives = 92/124 (74%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI S GNGN K
Sbjct: 116 IANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAK 175
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 176 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQK 235
Query: 14 RLVN 3
RL N
Sbjct: 236 RLTN 239
[141][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 156 bits (395), Expect = 6e-37
Identities = 77/124 (62%), Positives = 92/124 (74%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI + GNGN K
Sbjct: 224 IANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAK 283
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 284 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQK 343
Query: 14 RLVN 3
RL N
Sbjct: 344 RLTN 347
[142][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 156 bits (395), Expect = 6e-37
Identities = 77/124 (62%), Positives = 92/124 (74%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI + GNGN K
Sbjct: 136 IANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 196 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[143][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 156 bits (395), Expect = 6e-37
Identities = 77/124 (62%), Positives = 92/124 (74%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI + GNGN K
Sbjct: 245 IANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAK 304
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 305 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQK 364
Query: 14 RLVN 3
RL N
Sbjct: 365 RLTN 368
[144][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 156 bits (395), Expect = 6e-37
Identities = 77/124 (62%), Positives = 92/124 (74%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI + GNGN K
Sbjct: 116 IANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAK 175
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 176 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQK 235
Query: 14 RLVN 3
RL N
Sbjct: 236 RLTN 239
[145][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 156 bits (395), Expect = 6e-37
Identities = 77/124 (62%), Positives = 92/124 (74%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI + GNGN K
Sbjct: 136 IANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAK 195
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 196 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQK 255
Query: 14 RLVN 3
RL N
Sbjct: 256 RLTN 259
[146][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 156 bits (394), Expect = 8e-37
Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 7/120 (5%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKM---SNNFE-DRSYPI--DAVFMPVENANHSIHS 216
HI TLTEPID C+ELKIER RGYS+K+ +N F D YPI DAVFMPV N NHSI+S
Sbjct: 135 HIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPIDAVFMPVRNVNHSIYS 194
Query: 215 YGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY-LENNHHQVT 39
Y G+ +EILFLEIWTNGSLTPKEAL +ASR LINLFIPFLH EEE FY LENN +Q T
Sbjct: 195 YKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFYLLENNQNQHT 252
[147][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 155 bits (392), Expect = 1e-36
Identities = 76/124 (61%), Positives = 92/124 (74%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI + GNGN +
Sbjct: 245 IANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAR 304
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 305 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQK 364
Query: 14 RLVN 3
RL N
Sbjct: 365 RLTN 368
[148][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 155 bits (392), Expect = 1e-36
Identities = 78/116 (67%), Positives = 90/116 (77%), Gaps = 3/116 (2%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
HI TLTEPID C+ L+IERNRGY ++ +SN +DR YPIDAVFMPV+N NHSIHSY N
Sbjct: 135 HIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVFMPVKNVNHSIHSYEN 194
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVT 39
G +LFLEIWTNGSLTPKEAL ASR LINLFIPFLH EE+ + ENN ++ T
Sbjct: 195 GIHA--MLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQNCHFENNQNEHT 248
[149][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 154 bits (390), Expect = 2e-36
Identities = 75/116 (64%), Positives = 91/116 (78%), Gaps = 3/116 (2%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
HI T+TEPID C+ L+IERNRGY ++ ++N +DR YPID+VFMPV+N NHSIHSY N
Sbjct: 135 HIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVFMPVKNVNHSIHSYEN 194
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVT 39
G +LFLEIWTNGSLTPKEAL +ASR L NLFIPFLH EE+ F+ ENN ++ T
Sbjct: 195 GIHA--MLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQNFHFENNQNEHT 248
[150][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 154 bits (389), Expect = 3e-36
Identities = 76/124 (61%), Positives = 91/124 (73%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI + GNGN K
Sbjct: 116 IANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAK 175
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHN 15
EILFLEIWTNGSLTP EAL++ASRNLI+LF+PFLH EEE + N ++ T P F
Sbjct: 176 YEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQK 235
Query: 14 RLVN 3
RL N
Sbjct: 236 RLTN 239
[151][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 153 bits (387), Expect = 5e-36
Identities = 80/118 (67%), Positives = 90/118 (76%), Gaps = 5/118 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFE----DRSYPIDAVFMPVENANHSIHSYG 210
HI TLTEPID C+ LKIER RGYS+K+ + D +YPIDAVFMPV N NHSIHSY
Sbjct: 135 HIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAVFMPVRNVNHSIHSYE 194
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYL-ENNHHQVT 39
G+ E+LFLEIWTNGSLTPKEAL +ASR LINL +PFLH EEE FYL ENN +Q T
Sbjct: 195 RGSH--EMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEENFYLVENNQNQDT 250
[152][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 153 bits (387), Expect = 5e-36
Identities = 80/123 (65%), Positives = 94/123 (76%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LTEPI+L I L+IE+NR LK N F+D SY I AV MPV + N+SIHS GNG
Sbjct: 135 HIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPVRHMNYSIHSSGNG-- 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
KQEILFLEIWTNGSLTPKEALH+A RNLI+LFIPFLH EE LENN ++ P F F+
Sbjct: 193 KQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEGN--LENNQDRIPFPSFTFY 250
Query: 17 NRL 9
++L
Sbjct: 251 DKL 253
[153][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 152 bits (384), Expect = 1e-35
Identities = 74/125 (59%), Positives = 95/125 (76%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I+L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN +P FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNRKGSNMPPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[154][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 151 bits (382), Expect = 2e-35
Identities = 75/125 (60%), Positives = 94/125 (75%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[155][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 150 bits (380), Expect = 3e-35
Identities = 75/125 (60%), Positives = 94/125 (75%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[156][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 150 bits (380), Expect = 3e-35
Identities = 75/125 (60%), Positives = 94/125 (75%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[157][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 150 bits (380), Expect = 3e-35
Identities = 75/125 (60%), Positives = 94/125 (75%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[158][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 150 bits (380), Expect = 3e-35
Identities = 75/125 (60%), Positives = 94/125 (75%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[159][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 150 bits (380), Expect = 3e-35
Identities = 75/125 (60%), Positives = 94/125 (75%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[160][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 150 bits (379), Expect = 4e-35
Identities = 73/121 (60%), Positives = 92/121 (76%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LT+ I I L IE++RGY ++ N++D +PIDAVFMPV NAN+SIHSYGNGN+
Sbjct: 135 HIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVRNANYSIHSYGNGND 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QEILFLEIWTNGSL P+EAL++ASRNLI+LFIPFL EE+ +N + +P F F
Sbjct: 195 IQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDGMDNQNGSNMPSFSFS 254
Query: 17 N 15
N
Sbjct: 255 N 255
[161][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 149 bits (377), Expect = 7e-35
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+ NN +P FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSNMPPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[162][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 149 bits (376), Expect = 1e-34
Identities = 74/125 (59%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV + N+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDVNYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[163][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 148 bits (374), Expect = 2e-34
Identities = 74/125 (59%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N + FP
Sbjct: 195 IQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[164][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 148 bits (374), Expect = 2e-34
Identities = 74/125 (59%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N + FP
Sbjct: 195 IQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[165][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 148 bits (374), Expect = 2e-34
Identities = 74/125 (59%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + SNN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
QE+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ N + FP
Sbjct: 195 IQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[166][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 147 bits (372), Expect = 3e-34
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HLLTD 259
[167][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 147 bits (372), Expect = 3e-34
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HLLTD 259
[168][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 147 bits (372), Expect = 3e-34
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HLLTD 259
[169][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 147 bits (372), Expect = 3e-34
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HLLTD 259
[170][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 147 bits (372), Expect = 3e-34
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HLLTD 259
[171][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 147 bits (372), Expect = 3e-34
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HLLTD 259
[172][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 147 bits (371), Expect = 4e-34
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[173][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 147 bits (371), Expect = 4e-34
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[174][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 147 bits (371), Expect = 4e-34
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[175][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 147 bits (371), Expect = 4e-34
Identities = 73/125 (58%), Positives = 93/125 (74%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[176][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 146 bits (369), Expect = 6e-34
Identities = 73/125 (58%), Positives = 91/125 (72%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL +ASR LI LFIPFLH EE+ NN +P FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNIDGMNNRKGSNMPPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[177][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 146 bits (369), Expect = 6e-34
Identities = 71/119 (59%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNHHQVTLPFFP 24
+E+LFLEIWTNG LTP+EAL++ASRNLI+ FIPFLH EE+ + N +P FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNIDGINNRKGSSNMPPFP 253
[178][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 145 bits (367), Expect = 1e-33
Identities = 72/125 (57%), Positives = 92/125 (73%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV + N+SIHSYG+GNE
Sbjct: 135 HIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDVNYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+E+LFLEIWTNG LTP+EAL++ASRNLI+LFIPFLH EE+ NN + FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLS 254
Query: 17 NRLVN 3
+ L +
Sbjct: 255 HVLTD 259
[179][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 145 bits (367), Expect = 1e-33
Identities = 71/119 (59%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ I I L+IE+NRGY + NN++D +PIDAVFMPV +AN+SIHSYG+GNE
Sbjct: 135 HIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNHHQVTLPFFP 24
+E+LFLEIWTNG LTP+EAL++ASRNLI+L IPFLH EE+ + N +P FP
Sbjct: 195 IREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSSNMPPFP 253
[180][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 144 bits (363), Expect = 3e-33
Identities = 70/100 (70%), Positives = 82/100 (82%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA LTEP D IEL+I+R+RGY ++ N +D SYPIDAV MPV N N+SI + GNGN K
Sbjct: 245 IANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAK 304
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
EILFLEIWTNGSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 305 YEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEE 344
[181][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 140 bits (353), Expect = 4e-32
Identities = 68/118 (57%), Positives = 92/118 (77%), Gaps = 1/118 (0%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IAT+T+ I L IELKIE++ GY ++ D ++P+DAVFMP+ N N+S+HS+ NGNE
Sbjct: 135 YIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPIRNVNYSVHSFENGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF-YLENNHHQVTLPFF 27
QEILFLEIWTNGS+TPKEAL++ASR+LINLFIPFLH E++ F Y N ++ + +F
Sbjct: 195 TQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKEFIYGLKNTYESNMSYF 252
[182][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 134 bits (336), Expect = 4e-30
Identities = 65/119 (54%), Positives = 91/119 (76%), Gaps = 2/119 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IATLT+ I L IEL+IE++ GY ++ S D +PIDA+FMP+ NAN+S+HS+ + N+
Sbjct: 135 YIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPIRNANYSVHSFEHENK 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNHHQVTLPFF 27
QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++ LEN + + +F
Sbjct: 195 TQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEIINGLENKYESNNMSYF 253
[183][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 132 bits (333), Expect = 9e-30
Identities = 62/101 (61%), Positives = 85/101 (84%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IAT+T+PI L IEL+IE++ GY ++ S D +PIDA+FMP+ NAN+S+HS+ N N+
Sbjct: 135 YIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPIRNANYSVHSFENNNK 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 195 IQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKK 235
[184][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 132 bits (333), Expect = 9e-30
Identities = 67/119 (56%), Positives = 83/119 (69%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+L E I I +I ++RGY ++ NN D + DAV MPV NAN+SIHSYGNGNE
Sbjct: 135 HIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPVRNANYSIHSYGNGNE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPF 21
QEILF EIWTNGSL P EAL++ASRNLI+LFIPF+ EE+ +N + + FPF
Sbjct: 195 MQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNIDGIDNWNGYNMSLFPF 253
[185][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 132 bits (332), Expect = 1e-29
Identities = 61/101 (60%), Positives = 83/101 (82%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIAT+T+ I L IE++I+++RGY ++ S + + IDAVFMP+ AN+S+HS+GN +
Sbjct: 135 HIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPIRKANYSVHSFGNNKK 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
QEILF+EIWT+GSLTPKEAL++ASRNLI+LF+PFLH EEE
Sbjct: 195 FQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEE 235
[186][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 131 bits (330), Expect = 2e-29
Identities = 67/124 (54%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IATLT+ I L IELKIE++ GY + S D + +DAVF P+ NAN+S+HS+ N NE
Sbjct: 138 YIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVHSFENKNE 197
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE-EETFYLENNHHQVTLPFFPF 21
QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E EE + +N + + P
Sbjct: 198 TQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHDKNESNTLHFSSSPS 257
Query: 20 HNRL 9
N++
Sbjct: 258 ENKM 261
[187][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 130 bits (328), Expect = 4e-29
Identities = 68/118 (57%), Positives = 87/118 (73%), Gaps = 2/118 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IATLT+ I L IELKIE++ GY + S D + +DAVF P+ NAN+S+HS+ N NE
Sbjct: 138 YIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVHSFENKNE 197
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNHHQVTLPF 30
QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E+E L N + TL F
Sbjct: 198 TQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHGLGNKNESNTLHF 255
[188][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 130 bits (328), Expect = 4e-29
Identities = 63/119 (52%), Positives = 89/119 (74%), Gaps = 2/119 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IATLT+ I L IEL+IE++ GY ++ SN + + IDA+FMP+ NAN+S+HS+ N N+
Sbjct: 135 YIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPIRNANYSVHSFENENK 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFY--LENNHHQVTLPFF 27
QE+LF+EIWTNGS+TPK+AL++ASR+LI+LFIPFLH E LEN + + +F
Sbjct: 195 TQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREIINELENEYKLSNISYF 253
[189][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 128 bits (322), Expect = 2e-28
Identities = 60/101 (59%), Positives = 83/101 (82%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IAT+T+PI L IEL+I+++ GY + S D + IDA+FMP+ NAN+S+HS+ N N+
Sbjct: 135 YIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPIRNANYSVHSFENNNK 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
QEILF+EIWTNGS+TPKEAL++ASR+LI+LFIPFLH E++
Sbjct: 195 IQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKK 235
[190][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 125 bits (315), Expect = 1e-27
Identities = 62/123 (50%), Positives = 93/123 (75%), Gaps = 2/123 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IATL + I L IEL IE++RGY ++ +++ +P+DAVFMP+ NAN+S+HS+ + +
Sbjct: 135 YIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNANYSVHSFESEKK 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYLENNHHQVTLPFFP 24
+EILFLEIWT+GSLTPKEAL++ASRNLI+LFIP ++ E E+ F +E ++ + +FP
Sbjct: 195 IKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNFGIEKT-NESNMSYFP 253
Query: 23 FHN 15
F +
Sbjct: 254 FQS 256
[191][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 124 bits (311), Expect = 3e-27
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IA L +PIDLCI L+I+RN YS+K NNF+D SYPID VFM V+NANH+IH YGN NE+
Sbjct: 65 IARLKKPIDLCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNANHNIHFYGNVNER 124
Query: 194 QEILFLEIWTNGSLTPKEALHQAS 123
QEILFL++WTN +LTPKEA H+AS
Sbjct: 125 QEILFLKLWTNKNLTPKEAFHEAS 148
[192][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 122 bits (307), Expect = 1e-26
Identities = 55/101 (54%), Positives = 79/101 (78%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIAT+T+ + I+L I ++RGY ++ +ED ++ ++A F P+ NAN+S+HS+ N E
Sbjct: 135 HIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNANYSVHSFENEKE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
KQEILF+E+WTNGSLTPKEAL +AS++LINLFIP LH ++E
Sbjct: 195 KQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKE 235
[193][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 122 bits (306), Expect = 1e-26
Identities = 60/111 (54%), Positives = 78/111 (70%), Gaps = 10/111 (9%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----------YPIDAVFMPVENANH 228
HIA + + I L I L+IE+ RGY ++ NN+ + +PIDA F PV+N N+
Sbjct: 135 HIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVFPIDAAFAPVQNVNY 194
Query: 227 SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
SIHSY + NE QEILFLEIWTNG L PKEAL++ASRNLI+ F+PFL+ +EE
Sbjct: 195 SIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPFLNAKEE 245
[194][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 121 bits (303), Expect = 3e-26
Identities = 55/97 (56%), Positives = 79/97 (81%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
++AT+T I L IEL IE++RGY ++ S + + +PIDAVFMP+ NAN+S+HS+G+ +
Sbjct: 136 YVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRNANYSVHSFGSREK 195
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
+EIL LEIWTNGSLTP++AL++ASRNLI+LFIP ++
Sbjct: 196 TKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMN 232
[195][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 121 bits (303), Expect = 3e-26
Identities = 53/101 (52%), Positives = 76/101 (75%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+I T+T+PI + IEL IE + GY ++ N + D +P+DAVFMPV N N+S+H +G+G E
Sbjct: 135 YIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNVNYSVHPFGSGKE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+EILF+E+WTNGSLTP EA+ +AS++ I+L PFLH + E
Sbjct: 195 MREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHE 235
[196][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 120 bits (301), Expect = 5e-26
Identities = 54/101 (53%), Positives = 77/101 (76%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+I T+T+PI + IE +IE++ GY ++ N + D +P+DAV MPV N N+S+H +G+G E
Sbjct: 135 YIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRNVNYSVHPFGSGRE 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+EI F+EIWTNGS TP EAL +AS+NLI+L IPFLH++ E
Sbjct: 195 MREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHE 235
[197][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 115 bits (288), Expect = 2e-24
Identities = 58/118 (49%), Positives = 83/118 (70%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIAT+T I L +EL+IER+ GY + + IDA+F P+ NAN+SIHS+ + N+
Sbjct: 135 HIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPIRNANYSIHSFESNNK 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFP 24
+EILFLE+WTNGSLTP AL +ASR+LI+LFI FL++E+E E ++++ + FP
Sbjct: 195 VREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIKEIENNELNIKNFP 252
[198][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 113 bits (283), Expect = 6e-24
Identities = 55/98 (56%), Positives = 72/98 (73%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IAT+T+PI L IEL+IE++ GY ++ +PIDAVFMPV N N+SIH +G+G
Sbjct: 136 YIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRNVNYSIHLFGSGRA 195
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
QEILF+EIWTNGSLTP EAL +AS L++L FL+V
Sbjct: 196 TQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYV 233
[199][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 112 bits (279), Expect = 2e-23
Identities = 56/102 (54%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA LT+ + L IEL +E+ GY + D + ID+VFMPV NAN+S+HSY + +
Sbjct: 247 HIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANYSVHSYESEPD 306
Query: 197 -KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
QEILFLEIWTNGS+TP+EALH+A+R LI+LF+PFLH +++
Sbjct: 307 VTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKK 348
[200][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 107 bits (266), Expect = 5e-22
Identities = 52/103 (50%), Positives = 73/103 (70%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIAT+T+PI +EL I + RGY ++ N+ +D +P+DA+F PV N N SIH N E
Sbjct: 137 HIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNFSIH---NLAE 193
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETF 69
+QE L LEIWTNG++TP +AL Q S NLI+LF+P +E++T+
Sbjct: 194 QQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDDTY 236
[201][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 104 bits (259), Expect = 4e-21
Identities = 48/103 (46%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIAT+T+ + L IELKIE++ GY + ++D ++ +DAVF P+ + N+SIH + + ++
Sbjct: 138 HIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSVNYSIHCFESHDK 197
Query: 197 K--QEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+E+L EIW+NGS+TP+EA+++ASR+ INLF+PFL E+E
Sbjct: 198 SIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKE 240
[202][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 103 bits (257), Expect = 6e-21
Identities = 50/103 (48%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFMPVENANHSIHSYGNG 204
HIA+LT+ + + L IERN+GY++ + S ++ +PIDA MPV N N SIHSY +
Sbjct: 136 HIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPCMPVRNVNFSIHSYKSE 195
Query: 203 NEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
N+ +E+L EIWTNG LTP+EA ++A LI+L +P LH+EE+
Sbjct: 196 NDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED 238
[203][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 103 bits (256), Expect = 8e-21
Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN-GNE 198
IA LTEPID +EL IE++ G+ L+ + S+ IDA+FMP+ N N+SIH G+
Sbjct: 133 IAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIRNVNYSIHPVEKAGDW 192
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFI 99
K E+L LEIWTNGS+TPKEA HQAS ++N+F+
Sbjct: 193 KSELLILEIWTNGSITPKEAFHQASEKIMNIFL 225
[204][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 97.4 bits (241), Expect = 4e-19
Identities = 46/100 (46%), Positives = 69/100 (69%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
HIA+LT+ I + LKIE+ + Y+++ +D +PID V +PV+N N SIHSY + +
Sbjct: 136 HIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIHSYKSSDN 195
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
QE+L EIWTNG LTP+E +++A +L++L IP L VE+
Sbjct: 196 IQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQ 235
[205][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 95.5 bits (236), Expect = 2e-18
Identities = 41/60 (68%), Positives = 54/60 (90%)
Frame = -3
Query: 254 FMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
FMP+ NAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEAL++ASR+L +LFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
[206][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 94.7 bits (234), Expect = 3e-18
Identities = 41/99 (41%), Positives = 69/99 (69%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IAT+ +PI+ +++ I++ +GYSLK + + + +D VF+P+ + N+SIHS+ +
Sbjct: 135 YIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSVNYSIHSFEDEKA 194
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+E L +E+WTNGS+ PKEA+ +AS NL+NLF P + E
Sbjct: 195 TKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQE 233
[207][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 91.7 bits (226), Expect = 2e-17
Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN--G 204
HIAT+T I I L++ER G+ + ++ S P DAVFMP+ +AN+SIH G+ G
Sbjct: 136 HIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFMPIRHANYSIHRLGSHGG 195
Query: 203 NEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH 87
+E+L LE T+GS TP+EA+++ASRNL NLF PF H
Sbjct: 196 GIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[208][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 86.7 bits (213), Expect = 8e-16
Identities = 43/99 (43%), Positives = 69/99 (69%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IA +T I +E+++E++ GY + + + ID+VFMPV AN+S+HS+ +
Sbjct: 236 NIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFEVEDV 295
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 296 TREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334
[209][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 86.7 bits (213), Expect = 8e-16
Identities = 43/99 (43%), Positives = 69/99 (69%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IA +T I +E+++E++ GY + + + ID+VFMPV AN+S+HS+ +
Sbjct: 323 NIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFEVEDV 382
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+EILFLEI+TNGS++P+EAL +A+R+LI+L +P L E
Sbjct: 383 TREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421
[210][TOP]
>UniRef100_B9IJB3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IJB3_POPTR
Length = 73
Score = 86.3 bits (212), Expect = 1e-15
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = -3
Query: 365 LTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEKQEI 186
L EPIDL I L+IERN GY +K NF+D SY IDA+FM V NANH++HSYGNGNEK ++
Sbjct: 9 LKEPIDLHIGLEIERNHGYCMKPPKNFQDGSYSIDAIFMHVRNANHNVHSYGNGNEKSQL 68
[211][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 82.8 bits (203), Expect = 1e-14
Identities = 48/125 (38%), Positives = 71/125 (56%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNE 198
+IA L P + I + +E + + + + +DA PV N N+SIHS G G+
Sbjct: 132 YIARLEMPTSIEIHITLENTKTCTSLNTMPTTKGRFILDAALKPVRNMNYSIHSLGEGDM 191
Query: 197 KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFH 18
+QE+L LE+WTNGSLTP+E + QAS+NL +L P L V E F + N H+ + F P
Sbjct: 192 RQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKV-ERYFQAKQNIHKKRM-FTPTQ 249
Query: 17 NRLVN 3
+ +N
Sbjct: 250 SENLN 254
[212][TOP]
>UniRef100_C5Z5P0 Putative uncharacterized protein Sb10g023655 (Fragment) n=1
Tax=Sorghum bicolor RepID=C5Z5P0_SORBI
Length = 66
Score = 82.0 bits (201), Expect = 2e-14
Identities = 37/60 (61%), Positives = 45/60 (75%)
Frame = -3
Query: 182 FLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNHHQVTLPFFPFHNRLVN 3
FLEIWTNGSLTPKEAL++ SRNLI+LF+PF+H EEE E N +++T PF F R N
Sbjct: 7 FLEIWTNGSLTPKEALYETSRNLIDLFLPFIHTEEEGTNFEENKNRLTPPFLTFQKRFTN 66
[213][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 80.1 bits (196), Expect = 7e-14
Identities = 48/102 (47%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEK 195
IATL LCIEL I + L + + + IDA F PV+ AN SIHS G+
Sbjct: 144 IATLLNETQLCIELFIRQGIAKQLTRTKK-NHQGFFIDANFTPVQKANFSIHSVGDPKGL 202
Query: 194 QEILFLEIWTNGSLTPKEALHQASRNLINLF----IPFLHVE 81
Q++L LEIWTN +LTP EAL+QA +L+NLF P LH E
Sbjct: 203 QQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[214][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 78.2 bits (191), Expect = 3e-13
Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENANHSIHS-YG 210
++AT+ E L +E KIE+ RGY + K + N D PIDA+FMPV N+ + +
Sbjct: 126 YVATVAENAILEMEFKIEKGRGYKIIDKKQTENSID-FLPIDAIFMPVRKVNYMVEEIFL 184
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+E +E L LEIW NGS+TP++++ QA+ L+NLF PF + E
Sbjct: 185 RNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPFKKINFE 229
[215][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 76.6 bits (187), Expect = 8e-13
Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGY---SLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
HIA++T+PI L + LKIE+N G S+ + R P + +MPV + ++++ Y +
Sbjct: 139 HIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPTEIFYMPVRSVTYNVYFYKD 198
Query: 206 GNEKQ--EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
+ +IL E+WTNG LTPKEAL++A LI+L IP L V
Sbjct: 199 EYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLLDV 241
[216][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 76.6 bits (187), Expect = 8e-13
Identities = 49/110 (44%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
HIATL E L +E I R RGY S M+ +F ID+VFMPV N+++
Sbjct: 144 HIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDF----LQIDSVFMPVRKVNYTVE 199
Query: 218 SYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
+ G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P V +T
Sbjct: 200 AARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSPLQEVSFDT 249
[217][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 74.7 bits (182), Expect = 3e-12
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSL--KMSNNFEDRSYPIDAVFMPVENANHSIHS-YGN 207
+IAT++ I+L +E KIE GY L ++ N+ ID++FMPV+ N I + Y
Sbjct: 126 YIATISTSINLELEFKIEHGIGYKLASQLFNDENKNFLQIDSIFMPVQKVNFKIENLYDA 185
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE--EETFYLENNHHQVTL 36
N E L LEIWTNGS+ P EAL +A + +IN F L + +ET +N+ ++T+
Sbjct: 186 DNSISERLILEIWTNGSIEPIEALKKACKIIINCFNSLLKTQNTKETTKKTSNNRKLTI 244
[218][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 74.7 bits (182), Expect = 3e-12
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHS-YG 210
+IAT+T L IE KIE GY L F +S IDA+FMPV+ + I + Y
Sbjct: 126 YIATITTSNVLEIEFKIESGTGYKLA-GQTFCKKSQDYLQIDAIFMPVQKVDFKIENIYD 184
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLH--VEEETFYLEN 57
N N+ E LFL+IWTNGS++P+EA+ ASR +I+ F L + +ET EN
Sbjct: 185 NSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLLENKLPQETKESEN 237
[219][TOP]
>UniRef100_Q8DML0 DNA-directed RNA polymerase subunit alpha n=1
Tax=Thermosynechococcus elongatus BP-1 RepID=RPOA_THEEB
Length = 321
Score = 73.9 bits (180), Expect = 5e-12
Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 13/115 (11%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENANHSIHSYG 210
+IATL L +E KIE++RGY + +DR +DAVFMPV N+++ S
Sbjct: 129 YIATLMPGATLEMEFKIEKDRGYR-SVERVRDDRLALDYLQLDAVFMPVRRVNYTVDSVR 187
Query: 209 NGNEK-----QEILFLEIWTNGSLTPKEALHQASRNLINLFIPF----LHVEEET 72
+ + Q+ L LEIWTNGSLTP++AL+QA+ L++LF P LH E T
Sbjct: 188 SAGAEGDRQLQDYLKLEIWTNGSLTPQDALNQAATILVDLFSPLKEVPLHTSEAT 242
[220][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 73.9 bits (180), Expect = 5e-12
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSL---KMSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
+IAT++ + L +E +E +GY L + F+ PIDAVFMPV N+++
Sbjct: 131 YIATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFMPVTKVNYTVEENYG 190
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
G+ QE + +E+WTNGS+ ++A+ + +INLF P +V
Sbjct: 191 GDRSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSPLQNV 231
[221][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 73.2 bits (178), Expect = 9e-12
Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSYGN 207
+IATL+ L +E KIE+ +GY E S IDA+FMPV N+++ +
Sbjct: 125 YIATLSADATLEMEFKIEQGKGYRAIERGKDESASLDFLQIDAIFMPVRKVNYTVEDARS 184
Query: 206 GN-EKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
G +++ L LEIWTNGSLTP+EAL+Q + L++LF P V
Sbjct: 185 GGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLKDV 226
[222][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 73.2 bits (178), Expect = 9e-12
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSY-GN 207
IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+S+ S G
Sbjct: 127 IATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYSVESIRGE 186
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
E ++ L LEIWTNGS PKEAL +A+ L++LF P
Sbjct: 187 EGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[223][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 73.2 bits (178), Expect = 9e-12
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSY-GN 207
IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+S+ S G
Sbjct: 127 IATLTEGAKLEMEFRIEKGVGYVPVERSSEEPAALDFLQIDAVFMPVTKVNYSVESIRGE 186
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
E ++ L LEIWTNGS PKEAL +A+ L++LF P
Sbjct: 187 EGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[224][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 73.2 bits (178), Expect = 9e-12
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSY-GN 207
IATLTE L +E +IE+ GY ++ E + IDAVFMPV N+S+ S G
Sbjct: 127 IATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYSVESIRGE 186
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
E ++ L LEIWTNGS PKEAL +A+ L++LF P
Sbjct: 187 EGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[225][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 73.2 bits (178), Expect = 9e-12
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSY-G 210
+IATL E L +E ++ER GY + E+ S ID+VFMPV N+++
Sbjct: 126 YIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKVNYTVEDIRA 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
+G ++ L L+IWTNGS+ P+EAL +AS + NLFIP + E
Sbjct: 186 DGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229
[226][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 73.2 bits (178), Expect = 9e-12
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENANHSIHSYG 210
+IAT++ L +ELK+E++ GY K+ F +S PID++FMPV+ N+ +
Sbjct: 130 YIATISGNDYLEMELKVEKSSGY--KLVETFSKKSPLDFLPIDSIFMPVKKVNYYVEEIL 187
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ E L LE+WTNGSL+P+++++ AS NL+ LF P
Sbjct: 188 DSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[227][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 72.8 bits (177), Expect = 1e-11
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSY-G 210
++ATL E L +E ++E+ +GY + E S ID++FMPV N+S+
Sbjct: 126 YVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPVTKVNYSVEDIRS 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 186 ESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[228][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 72.8 bits (177), Expect = 1e-11
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSYG- 210
+IATL + L +E +IER +GY E S +DAVFMPV N+S+
Sbjct: 126 YIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVFMPVTKVNYSVEDTRV 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVE 81
+G+ +++ L L++WTNGS++P+EAL QA+ L++LF P +E
Sbjct: 186 DGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[229][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 72.8 bits (177), Expect = 1e-11
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSY-G 210
++ATL E L +E ++E+ +GY + E S ID++FMPV N+S+
Sbjct: 126 YVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPVTKVNYSVEDIRS 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+ ++ L LEIWTNGS+ PKEAL QA+ L+NLF P
Sbjct: 186 ESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNP 223
[230][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 72.4 bits (176), Expect = 1e-11
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSYG- 210
+IATL+ L +E ++E+ GY N E + IDAVFMPV N+++
Sbjct: 126 YIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPVRKVNYTVEDARV 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEET 72
G+ +++ L L+IWTNGSLTP+EAL QA+ L++LF+P + E+
Sbjct: 186 GGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLKDITLES 231
[231][TOP]
>UniRef100_B5YDX0 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Dictyoglomus
thermophilum H-6-12 RepID=B5YDX0_DICT6
Length = 324
Score = 71.6 bits (174), Expect = 3e-11
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 15/139 (10%)
Frame = -3
Query: 374 IATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPI-----DAVFMPVENANHSIHSYG 210
IATL E + +E+++++ +GY N +D++YPI D++F PV+ ++++
Sbjct: 124 IATLVEDMPFHMEVEVKKGKGYVSAEEN--KDQNYPIGVLVLDSIFSPVKKVSYTVEKTR 181
Query: 209 NGNEKQ-EILFLEIWTNGSLTPKEALHQASRNLINLF---------IPFLHVEEETFYLE 60
G + L LEIWTNGS++P+EA +ASR L+ F +P+ V+ E YLE
Sbjct: 182 VGRRTDLDRLILEIWTNGSISPEEAFREASRILMEYFRLLNEKEFQLPYEEVKPENTYLE 241
Query: 59 NNHHQVTLPFFPFHNRLVN 3
+TL R N
Sbjct: 242 EEKKGLTLEDLGLSTRAYN 260
[232][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 71.6 bits (174), Expect = 3e-11
Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGY-------SLKMSNNFEDRSYPIDAVFMPVENANHSIH 219
HIATL E L +E I R GY S M+ +F ID+VFMPV N+++
Sbjct: 146 HIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDF----LQIDSVFMPVRKVNYAVE 201
Query: 218 SYGNGNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
+ G +++ L LEIWTNGSLTP+EAL QA+R L+ LF P V
Sbjct: 202 AARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAPLQEV 247
[233][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 71.2 bits (173), Expect = 3e-11
Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS--YPIDAVFMPVENANHSIH-SYGN 207
+IAT+ L +E KIE GY + +N + +D+VFMPV+ N I + G
Sbjct: 126 YIATICGNNTLEMEFKIEVGSGYKIVEKDNSTEHFEFLQVDSVFMPVKKVNFRIEETRGE 185
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV--EEETFYLEN 57
N E L L+IWTNGS++ KEA+ A+ NLINLF P + E ET Y N
Sbjct: 186 NNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDGESETDYETN 237
[234][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 70.5 bits (171), Expect = 6e-11
Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHS-YG 210
+IATL + L +E +IE+ + Y N E + IDAVFMPV N+S+ S +
Sbjct: 126 YIATLADGAKLEMEFRIEKGKSYRAVQRNRDEATALDFLQIDAVFMPVTKVNYSVDSIHS 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
G+ ++ L LEIWTNGS+ P+EAL QA+ + LF P
Sbjct: 186 EGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNP 223
[235][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 70.5 bits (171), Expect = 6e-11
Identities = 42/98 (42%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSY-G 210
++ATLTE L +E +IE GY + S IDAVFMPV N+ + G
Sbjct: 128 YVATLTEGSKLEMEFRIETGTGYKGVERGKDDGTSLDFLEIDAVFMPVTKVNYIVEDIRG 187
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
E Q+ L LEIWTNGS PKEAL +A+ +++LF P
Sbjct: 188 EHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[236][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 70.1 bits (170), Expect = 7e-11
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSYG- 210
++ATL E L +E +IE+ +GY + S ID+VFMPV N+S+
Sbjct: 126 YVATLAEGSKLEMEFRIEKGKGYRAIERGKDDSTSLDFLQIDSVFMPVTKVNYSVEDVRV 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
+G ++ L +EIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 186 DGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[237][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 70.1 bits (170), Expect = 7e-11
Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS---YPIDAVFMPVENANHSIHS-YG 210
+IAT++ L IE K ER GY L F D+S IDA+FMP++ + I + Y
Sbjct: 128 YIATISTSNVLEIEFKFERGTGYKLA-GQTFCDKSEDFLQIDAIFMPIQKVDFKIENVYD 186
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
N N E LFL+IWTNGS++P +A+ AS+ +I F
Sbjct: 187 NSNSITERLFLDIWTNGSISPDDAISYASKFIIEFF 222
[238][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 69.7 bits (169), Expect = 1e-10
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIH-SYG 210
++AT+ E L +E +IE+ +GY E S ID++FMPV N+S+ S G
Sbjct: 126 YVATIAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEESRG 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
G ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 186 EGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[239][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 69.3 bits (168), Expect = 1e-10
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSYGN 207
++AT+ + L +E +IER +GY E S ID+VFMPV N+S+
Sbjct: 126 YVATIADGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYSVEEARG 185
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 186 DGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 229
[240][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 69.3 bits (168), Expect = 1e-10
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSY-G 210
++AT+ E L +E +IER +GY E S ID++FMPV N+S+
Sbjct: 126 YVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRA 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 186 DGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[241][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 69.3 bits (168), Expect = 1e-10
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSY-G 210
++AT+ E L +E +IER +GY E S ID++FMPV N+S+
Sbjct: 126 YVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRA 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+G+ ++ L LE+WTNGS++P+EAL A+ L++LF P + E
Sbjct: 186 DGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLE 230
[242][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 68.9 bits (167), Expect = 2e-10
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSYG- 210
++ATL++ L +E ++E+ +GY + S ID+VFMPV N+S+
Sbjct: 126 YVATLSDGSKLEMEFRVEKGKGYRAIERGKDDTTSLDFLQIDSVFMPVTKVNYSVEDVRV 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE 78
+G ++ L LEIWTNGS+ PKEAL +A+ +++LF P + E
Sbjct: 186 DGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNE 229
[243][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 68.6 bits (166), Expect = 2e-10
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIH-SYG 210
++ATL E L +E +IE+ +GY E S ID+VFMPV N+S+ + G
Sbjct: 126 YVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYSVEEARG 185
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ ++ L LE+WTNGS++P+EAL A+ L+ LF P + E
Sbjct: 186 ESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNPLKDISLE 230
[244][TOP]
>UniRef100_Q3ZJ77 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pseudendoclonium
akinetum RepID=RPOA_PSEAK
Length = 577
Score = 68.6 bits (166), Expect = 2e-10
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = -3
Query: 272 YPIDAVFMPVENANHSIHSYGNGNEK-QEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
+PIDA+FMP+ N+ I S + K ++ + LE+WTNGS+ P+ A+H+A++ LI LF+P
Sbjct: 397 FPIDAIFMPINRVNYLIESTEDIKLKIKDRVILEVWTNGSIHPRHAIHKAAKALIQLFLP 456
Query: 95 FLHVEEETFYLENNHH 48
+ F + +N H
Sbjct: 457 LQQIRTNLFLISDNSH 472
[245][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 68.6 bits (166), Expect = 2e-10
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLK---MSNNFEDRSYPIDAVFMPVENANHSIHSYGN 207
+IATL+ +L +E I +GY + + N S P+DA+FMP+ N+ +
Sbjct: 131 YIATLSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDAIFMPIHKVNYMVEQDHT 190
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
E + LEIWTNGS++P++AL + +I+LF P H E
Sbjct: 191 SKFLTERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSSE 234
[246][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 68.6 bits (166), Expect = 2e-10
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS----YPIDAVFMPVENANHSIHSYG 210
+IATL E L +E +IER +GY + ED + IDA+FMPV N ++ S
Sbjct: 126 YIATLAEDGQLEMEFQIERGKGYRA-IERGSEDGAAIDYLSIDAIFMPVRKVNWTVESER 184
Query: 209 NG-NEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEE 75
+ N +Q+ L LEIWT+GSL+P+EAL QA++ L++ P + E
Sbjct: 185 SAANVEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRPLQEITFE 230
[247][TOP]
>UniRef100_A0T0K0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaeodactylum
tricornutum RepID=RPOA_PHATR
Length = 311
Score = 68.2 bits (165), Expect = 3e-10
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNF--EDRSY-PIDAVFMPVENANHSIHS-YG 210
+IAT++ L IE K E GY L S NF ED +Y +D +FMPV+ + I + Y
Sbjct: 126 YIATISTSNILEIEFKFEYGSGYHLA-SQNFVEEDENYLQLDTIFMPVQKVDFKIENIYD 184
Query: 209 NGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
N E LFL+IWTNGS++P +AL A++ +I+LF
Sbjct: 185 ATNNISERLFLDIWTNGSISPNDALESAAQVIIDLF 220
[248][TOP]
>UniRef100_Q6J227 RNA polymerase alpha subunit (Fragment) n=1 Tax=Corethron hystrix
RepID=Q6J227_9STRA
Length = 301
Score = 67.8 bits (164), Expect = 4e-10
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRS--YPIDAVFMPVENANHSIHS-YGN 207
+IAT++ + L +E K E GY L E S IDAVFMPV+ + + + Y
Sbjct: 129 YIATISRSMILEMEFKFESGIGYRLVNQTKMESSSDFLEIDAVFMPVQKVDFKVENIYDK 188
Query: 206 GNEKQEILFLEIWTNGSLTPKEALHQASRNLINLF 102
E L ++IWTNGS++P+ AL+++S N+I LF
Sbjct: 189 NKHISENLIIDIWTNGSISPETALYESSNNIIELF 223
[249][TOP]
>UniRef100_Q31L30 DNA-directed RNA polymerase subunit alpha n=2 Tax=Synechococcus
elongatus RepID=RPOA_SYNE7
Length = 309
Score = 67.8 bits (164), Expect = 4e-10
Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSYGN 207
+IA+L+E L +ELK+E GY ++ E + +DAVFMPV N+S+
Sbjct: 125 YIASLSEGATLEMELKVEWGTGYRAIDRSHDETTALDFLQLDAVFMPVRRVNYSVEDARV 184
Query: 206 GNEKQ-EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHV 84
G + L LE+WTNGSL+P+EAL QA+ L+ LF P +V
Sbjct: 185 GESTAIDRLVLEVWTNGSLSPQEALSQAASCLVALFEPLKNV 226
[250][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 67.4 bits (163), Expect = 5e-10
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -3
Query: 377 HIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYP---IDAVFMPVENANHSIHSYGN 207
++ATL+ L +E +IE+ +GY N E + IDA++MPV N+ +
Sbjct: 126 YVATLSSDATLEMEFRIEQGKGYHAVGKNRDEAAALDFLEIDAIYMPVRRVNYEVEDARV 185
Query: 206 GNE-KQEILFLEIWTNGSLTPKEALHQASRNLINLFIP 96
G +++ L L+IWTNG+LTP+E+L QA+ L++LF P
Sbjct: 186 GGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNP 223