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[1][TOP]
>UniRef100_Q9ZQM0 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=Q9ZQM0_ARATH
Length = 1044
Score = 120 bits (301), Expect(2) = 2e-35
Identities = 63/116 (54%), Positives = 79/116 (68%), Gaps = 5/116 (4%)
Frame = -1
Query: 342 QTLLSRPIVP-----EFESDAILCFTDAAWREDSHDAGLGWIFVDNSNHSEIQDHAVARE 178
Q S+ ++P E + D I C TDA+WRE++ AG GW+FVD+SNH E A A
Sbjct: 888 QASKSKIVIPGISPSEIDLDTIQCSTDASWREETLQAGFGWVFVDHSNHLESHHKAAAMN 947
Query: 177 VSSPLMAKAIALFSAIQQASNRGFKKLVVASDSQQLVEAIVGELHPKELQGILHDI 10
+ SPL+AKA AL AIQ A++ GFKKLVVASDSQQLV+ + GE HP EL GI+ DI
Sbjct: 948 IRSPLLAKASALSLAIQHAADLGFKKLVVASDSQQLVKVLNGEPHPMELHGIVFDI 1003
Score = 52.8 bits (125), Expect(2) = 2e-35
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = -3
Query: 511 QIWEQAPFKNTLSTFTFTNLQMGFEAAKHLICLPLVEIGSNPLFPWIIWTIW 356
++W+ +PFK TL T+++ G E +K L+ LP + IG L WI+W +W
Sbjct: 802 KVWDLSPFKTTLQASRITSMKQGLEVSKLLVTLPPIGIGQGQLPIWILWNLW 853
[2][TOP]
>UniRef100_Q9SJP3 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=Q9SJP3_ARATH
Length = 1311
Score = 86.3 bits (212), Expect(2) = 5e-24
Identities = 47/112 (41%), Positives = 64/112 (57%)
Frame = -1
Query: 342 QTLLSRPIVPEFESDAILCFTDAAWREDSHDAGLGWIFVDNSNHSEIQDHAVAREVSSPL 163
+ L P P + +C TDA+W+ D+H AGLGWIF+DN+ + + V SPL
Sbjct: 1164 RALRKLPFKPLLLINPFICLTDASWKTDAH-AGLGWIFMDNNERTFSKGSLAVAHVGSPL 1222
Query: 162 MAKAIALFSAIQQASNRGFKKLVVASDSQQLVEAIVGELHPKELQGILHDIL 7
MA+A+A AI+ A + SDS LV+A+ +L KEL GILHDIL
Sbjct: 1223 MAEALATLIAIRVAIGLALTHISFVSDSLTLVKALNSKLQSKELHGILHDIL 1274
Score = 48.9 bits (115), Expect(2) = 5e-24
Identities = 26/53 (49%), Positives = 31/53 (58%)
Frame = -3
Query: 508 IWEQAPFKNTLSTFTFTNLQMGFEAAKHLICLPLVEIGSNPLFPWIIWTIWTS 350
+W+ A +N L + T G AA LICLP + IG PL PWI WTIWTS
Sbjct: 1100 LWKMA--QNALQSVT-----EGLIAAIKLICLPPIGIGLGPLAPWIFWTIWTS 1145
[3][TOP]
>UniRef100_UPI00001622EA beta-galactosidase n=1 Tax=Arabidopsis thaliana RepID=UPI00001622EA
Length = 315
Score = 58.5 bits (140), Expect(2) = 2e-18
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = -3
Query: 565 CSAEESGLHLFFLCLFAAQIWEQAPFKNTLSTFTFTNLQMGFEAAKHLICLPLVEIGSNP 386
C E+ LH+ F C FA +W PF ++ +++ G L CLP I S P
Sbjct: 81 CGEPETILHMLFHCQFAQLVWSPTPFARHWASVGAGSVREGLITGCKLACLPPTGIASGP 140
Query: 385 LFPWIIWTIWTS 350
L PWI W++W S
Sbjct: 141 LAPWICWSLWKS 152
Score = 57.8 bits (138), Expect(2) = 2e-18
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = -1
Query: 279 DAAWREDSHDAGLGWIFVD----NSNHSEIQDHAVAREVSSPLMAKAIALFSAIQQASNR 112
D +WR D AGLGW F + S+HS A+ + VSSP MA+++A + + +A
Sbjct: 188 DGSWRNDLKAAGLGWTFTNPAGLTSHHS-----ALCKNVSSPFMAESLACGAVVLEAVRA 242
Query: 111 GFKKLVVASDSQQLVEAIVGELHPKELQGIL 19
G ++ SD QQLV AI L E+ GI+
Sbjct: 243 GADSFLLESDYQQLVVAINARLVLLEVHGII 273
[4][TOP]
>UniRef100_Q9M0P4 Putative uncharacterized protein AT4g09490 n=1 Tax=Arabidopsis
thaliana RepID=Q9M0P4_ARATH
Length = 170
Score = 87.4 bits (215), Expect = 7e-16
Identities = 45/98 (45%), Positives = 60/98 (61%)
Frame = -1
Query: 300 DAILCFTDAAWREDSHDAGLGWIFVDNSNHSEIQDHAVAREVSSPLMAKAIALFSAIQQA 121
D + FTDAAW+ ++ D G GW+ + + + + AR V PLMA+AIALF A+Q A
Sbjct: 29 DRVTIFTDAAWKHETKDVGFGWVIRNCPELTALHYQSAARNVRLPLMAEAIALFLALQYA 88
Query: 120 SNRGFKKLVVASDSQQLVEAIVGELHPKELQGILHDIL 7
+ G KL +ASDSQQL+ AI E E GI+ DIL
Sbjct: 89 QSIGITKLSMASDSQQLITAITSESPSTEFYGIIFDIL 126
[5][TOP]
>UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=Q9SJ38_ARATH
Length = 1229
Score = 55.1 bits (131), Expect(2) = 1e-15
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = -1
Query: 288 CFTDAAWREDSHDAGLGWIFVDNS--NHSEIQDHAVAREVSSPLMAKAIALFSAIQQASN 115
CF DAAW S AG GW+F + A R + S L A+A A+ SA+ A
Sbjct: 1087 CFVDAAWIAQSSLAGSGWVFQSATALEKETATYSAGCRRLPSALSAEAWAIKSALLHALQ 1146
Query: 114 RGFKKLVVASDSQQLVEAIVGELHPKELQGILHDI 10
G L+V SDS+ +V+A+ + E+ G+L +I
Sbjct: 1147 LGRTDLMVLSDSKSVVDALTSNISINEIYGLLMEI 1181
Score = 52.0 bits (123), Expect(2) = 1e-15
Identities = 30/74 (40%), Positives = 37/74 (50%)
Frame = -3
Query: 565 CSAEESGLHLFFLCLFAAQIWEQAPFKNTLSTFTFTNLQMGFEAAKHLICLPLVEIGSNP 386
C A ES HLFF C FAAQ+WE AP + T + +++ K I LP + S
Sbjct: 975 CGAPESTTHLFFHCEFAAQVWELAPLQET-TVPPGSSMLDALSLLKKAIILPPTGVTSAA 1033
Query: 385 LFPWIIWTIWTSGT 344
LFPWI GT
Sbjct: 1034 LFPWICGIYGKLGT 1047
[6][TOP]
>UniRef100_A0MFC6 Putative uncharacterized protein (Fragment) n=2 Tax=Arabidopsis
thaliana RepID=A0MFC6_ARATH
Length = 133
Score = 65.5 bits (158), Expect = 3e-09
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = -1
Query: 195 HAVAREVSSPLMAKAIALFSAIQQASNRGFKKLVVASDSQQLVEAIVGELHPKELQGILH 16
H+ AR + S L A+A+A+ A+QQA + GF L +ASDSQQL++AI EL GILH
Sbjct: 25 HSSARNIRSALTAEALAMLLALQQAKDLGFTSLSIASDSQQLIKAITSRTPLTELHGILH 84
Query: 15 DILFI 1
DIL +
Sbjct: 85 DILLL 89
[7][TOP]
>UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9SZ87_ARATH
Length = 1274
Score = 65.1 bits (157), Expect = 4e-09
Identities = 27/70 (38%), Positives = 41/70 (58%)
Frame = -3
Query: 565 CSAEESGLHLFFLCLFAAQIWEQAPFKNTLSTFTFTNLQMGFEAAKHLICLPLVEIGSNP 386
C ES LHL LC +A ++WE AP S T +++ + AK ++ LP +GS P
Sbjct: 1015 CGQTESSLHLMLLCPYAKKVWELAPVLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAP 1074
Query: 385 LFPWIIWTIW 356
L+PW++W +W
Sbjct: 1075 LYPWLLWHLW 1084
Score = 55.5 bits (132), Expect = 3e-06
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -1
Query: 288 CFTDAAWREDSHDAGLGWIFVDNSNHSEIQDHAVAREVSSPLMAKAIALFSAIQQASNRG 109
CF DAAW + G+GW D ++ + + V S LMA+ +A+ A+ A + G
Sbjct: 1141 CFVDAAWTTSGY-CGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHLALVDALSTG 1199
Query: 108 FKKLVVASDSQQLVEAIVGELHPKELQGILHDI 10
++L V SD ++L+ + EL+G+LHDI
Sbjct: 1200 VRQLNVFSDCKELISLLNSGKSIVELRGLLHDI 1232
[8][TOP]
>UniRef100_O81517 T24M8.8 protein n=1 Tax=Arabidopsis thaliana RepID=O81517_ARATH
Length = 1164
Score = 61.6 bits (148), Expect = 4e-08
Identities = 38/104 (36%), Positives = 48/104 (46%)
Frame = -1
Query: 321 IVPEFESDAILCFTDAAWREDSHDAGLGWIFVDNSNHSEIQDHAVAREVSSPLMAKAIAL 142
++P+ E CFTDAAW S G+ WIF Q + S L A+A A
Sbjct: 1024 VLPQCED--FTCFTDAAWNTFSGSCGMRWIFKTQHQRVIHQGSSSRLHTPSALAAEAFAF 1081
Query: 141 FSAIQQASNRGFKKLVVASDSQQLVEAIVGELHPKELQGILHDI 10
SA+ A F + V DSQ L+ E ELQGILHD+
Sbjct: 1082 KSALTAALRMEFTSITVCLDSQVLISLFNTETTSNELQGILHDM 1125
[9][TOP]
>UniRef100_Q9FJA4 Non-LTR retroelement reverse transcriptase-like protein n=1
Tax=Arabidopsis thaliana RepID=Q9FJA4_ARATH
Length = 1197
Score = 60.8 bits (146), Expect = 7e-08
Identities = 35/100 (35%), Positives = 56/100 (56%)
Frame = -1
Query: 309 FESDAILCFTDAAWREDSHDAGLGWIFVDNSNHSEIQDHAVAREVSSPLMAKAIALFSAI 130
F ++ + TDAAW + AGLGW + + ++ A++ V SPL+A+A+ + SA+
Sbjct: 1035 FSLNSTVIHTDAAWSVLTCSAGLGWT-LKSPGIPLKKNSALSEHVPSPLVAEALVVHSAL 1093
Query: 129 QQASNRGFKKLVVASDSQQLVEAIVGELHPKELQGILHDI 10
A N G +++ SD Q L AI+ + E+ GIL DI
Sbjct: 1094 WSAHNLGLHDVILKSDCQVLTMAIISQFPLSEIHGILQDI 1133
Score = 57.4 bits (137), Expect = 8e-07
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = -3
Query: 565 CSAEESGLHLFFLCLFAAQIWEQAPFKNTLSTFTFTNLQMGFEAAKHLICLPLVEIGSNP 386
C E+ H F C+F ++W AP + FT++++G K LP V +G
Sbjct: 914 CGELETSSHALFNCMFVQRVWRLAPLEGIDLFLVFTDVKLGLSWLKKKKTLPSVGLGYCA 973
Query: 385 LFPWIIWTIW 356
L+PWI WT+W
Sbjct: 974 LYPWICWTLW 983
[10][TOP]
>UniRef100_Q6DR49 Putative uncharacterized protein n=1 Tax=Arabidopsis thaliana
RepID=Q6DR49_ARATH
Length = 169
Score = 60.8 bits (146), Expect = 7e-08
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Frame = -1
Query: 297 AILCFTDAAWREDSHDAGLGWIFVD----NSNHSEIQDHAVAREVSSPLMAKAIALFSAI 130
++ C D +WR D AGLGW F + S+HS A+ + VSSP MA+++A + +
Sbjct: 36 SVSCKADGSWRNDLKAAGLGWTFTNPAGLTSHHS-----ALCKNVSSPFMAESLACGAVV 90
Query: 129 QQASNRGFKKLVVASDSQQLVEAIVGELHPKELQGIL 19
+A G ++ SD QQLV AI L E+ GI+
Sbjct: 91 LEAVRAGADSFLLESDYQQLVVAINARLVLLEVHGII 127
[11][TOP]
>UniRef100_Q84K21 Putative uncharacterized protein n=1 Tax=Arabidopsis thaliana
RepID=Q84K21_ARATH
Length = 169
Score = 60.5 bits (145), Expect = 9e-08
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Frame = -1
Query: 297 AILCFTDAAWREDSHDAGLGWIFVD----NSNHSEIQDHAVAREVSSPLMAKAIALFSAI 130
++ C D +WR D AGLGW F + S+HS A+ + VSSP MA+++A + +
Sbjct: 36 SVSCKPDGSWRNDLKAAGLGWTFTNPAGLTSHHS-----ALCKNVSSPFMAESLACGAVV 90
Query: 129 QQASNRGFKKLVVASDSQQLVEAIVGELHPKELQGIL 19
+A G ++ SD QQLV AI L E+ GI+
Sbjct: 91 LEAVRAGADSFLLESDYQQLVVAINARLVLLEVHGII 127
[12][TOP]
>UniRef100_UPI0000048211 nucleic acid binding / ribonuclease H n=1 Tax=Arabidopsis thaliana
RepID=UPI0000048211
Length = 303
Score = 58.9 bits (141), Expect = 3e-07
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Frame = -1
Query: 291 LCFTDAAWREDSHDAGLGWIFVDNSNHSEIQ---DHAVAREVSSPLMAKAIALFSAIQQA 121
LC+ DAAW++ S AG GW+F ++HSE + A R SPL A+A A+ SA+ A
Sbjct: 161 LCYVDAAWQQQSSLAGSGWVF-QATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHA 219
Query: 120 SNRGFKKLVVASDSQQLVEAIVGELHPKELQGILHDI 10
L+V SDS+ +V+A+ + E+ G+L +I
Sbjct: 220 LQLERSDLLVLSDSKSIVDALNSNVSLNEIFGLLVEI 256
[13][TOP]
>UniRef100_O80591 T27I1.2 protein n=1 Tax=Arabidopsis thaliana RepID=O80591_ARATH
Length = 374
Score = 58.9 bits (141), Expect = 3e-07
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Frame = -1
Query: 291 LCFTDAAWREDSHDAGLGWIFVDNSNHSEIQ---DHAVAREVSSPLMAKAIALFSAIQQA 121
LC+ DAAW++ S AG GW+F ++HSE + A R SPL A+A A+ SA+ A
Sbjct: 161 LCYVDAAWQQQSSLAGSGWVF-QATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHA 219
Query: 120 SNRGFKKLVVASDSQQLVEAIVGELHPKELQGILHDI 10
L+V SDS+ +V+A+ + E+ G+L +I
Sbjct: 220 LQLERSDLLVLSDSKSIVDALNSNVSLNEIFGLLVEI 256
[14][TOP]
>UniRef100_A0MER7 Putative uncharacterized protein (Fragment) n=2 Tax=Arabidopsis
thaliana RepID=A0MER7_ARATH
Length = 293
Score = 45.4 bits (106), Expect(2) = 3e-07
Identities = 33/117 (28%), Positives = 53/117 (45%)
Frame = -1
Query: 360 SGPQGHQTLLSRPIVPEFESDAILCFTDAAWREDSHDAGLGWIFVDNSNHSEIQDHAVAR 181
SGPQ + L + P ++ + C TDA W+ ++ G+GWI + S
Sbjct: 125 SGPQVERNLSVQWKAPPYQW--VKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALP 182
Query: 180 EVSSPLMAKAIALFSAIQQASNRGFKKLVVASDSQQLVEAIVGELHPKELQGILHDI 10
+ L A+ AL A+ S +K+++ SD+Q LV + + LQ L DI
Sbjct: 183 RTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDFWPTLQPALEDI 239
Score = 33.1 bits (74), Expect(2) = 3e-07
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = -3
Query: 559 AEESGLHLFFLCLFAAQIWEQAP--------FKNTLSTFTFTNLQMGFEAAKHLICLPLV 404
+ E+ HL F C FA +W +P + ++L + L + E K L
Sbjct: 18 SRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPK------LG 71
Query: 403 EIGSNPLFPWIIWTIWTS 350
+IG+ L PW++W +W S
Sbjct: 72 KIGN--LVPWLLWRLWKS 87
[15][TOP]
>UniRef100_A0MEL7 Putative uncharacterized protein (Fragment) n=2 Tax=Arabidopsis
thaliana RepID=A0MEL7_ARATH
Length = 154
Score = 57.8 bits (138), Expect = 6e-07
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Frame = -3
Query: 544 LHLFFL----CLFAAQIWEQAPFKNTLSTFTFTNLQMGFEAAKHLICLPLVEIGSNPLFP 377
++LFF+ LFA +IW APFK+ L + ++ G ++ ICLP +G L P
Sbjct: 2 MNLFFIFSSSVLFAQKIWSLAPFKSPLICASILSVTEGIASSSKAICLPPSGLGGGRLSP 61
Query: 376 WIIWTIWTS 350
W+ WTIW+S
Sbjct: 62 WLFWTIWSS 70
[16][TOP]
>UniRef100_Q9LHK6 Similarity to non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=Q9LHK6_ARATH
Length = 332
Score = 53.9 bits (128), Expect = 8e-06
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = -3
Query: 565 CSAEESGLHLFFLCLFAAQIWEQAPFKNTLSTFTFTNLQMGFEAAKHLICLPLVEIGSNP 386
C E LH+FF C A ++W+ A + ++ E + + LP + +GS P
Sbjct: 173 CGEIEDALHIFFRCPIAVKVWDLATLLPKPRAGSVVYVKKILEKGRTCLSLPPLGLGSTP 232
Query: 385 LFPWIIWTIW 356
L+PWI+W +W
Sbjct: 233 LYPWILWFLW 242