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[1][TOP]
>UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis
thaliana RepID=O81098_ARATH
Length = 205
Score = 201 bits (511), Expect = 2e-50
Identities = 101/103 (98%), Positives = 102/103 (99%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR
Sbjct: 1 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60
Query: 276 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV +
Sbjct: 61 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQ 103
[2][TOP]
>UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR
Length = 206
Score = 159 bits (402), Expect = 9e-38
Identities = 76/102 (74%), Positives = 91/102 (89%)
Frame = +3
Query: 99 LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 278
LTEEE+KRL RI+KT+MQML+DRGYF+ D E+ MT++QF K+G+NMKREDLV K KRN
Sbjct: 3 LTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTKRN 62
Query: 279 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
D+SDQ+Y+FFP+EAKVGVKTMK YTNRMKSENVFRAILVV +
Sbjct: 63 DSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
[3][TOP]
>UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PEL2_VITVI
Length = 206
Score = 155 bits (392), Expect = 1e-36
Identities = 73/101 (72%), Positives = 88/101 (87%)
Frame = +3
Query: 102 TEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRND 281
+EEE+ RL+RI+KT+MQML+DRGYF+ D E+ MTK QF+ K G+NMKREDLV KAKR D
Sbjct: 4 SEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTD 63
Query: 282 NSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+SDQ+Y+FFP+E KVGVKTMK YTNRMKSENVFRAILVV +
Sbjct: 64 SSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
[4][TOP]
>UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SVA4_SOYBN
Length = 206
Score = 140 bits (354), Expect = 3e-32
Identities = 65/100 (65%), Positives = 86/100 (86%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
+L+EEE+ RLYRI+KT+MQMLRDRG+ + D E+ M+K +F K+G++MKREDLV K+K+
Sbjct: 2 VLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKK 61
Query: 276 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+++ DQ+Y+FFPDE KVGVKTMK YTNRM SENV+RAILV
Sbjct: 62 DNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILV 101
[5][TOP]
>UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SXZ4_SOYBN
Length = 206
Score = 138 bits (348), Expect = 2e-31
Identities = 64/100 (64%), Positives = 85/100 (85%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
+L+EEE+ RLYRI+KT+MQMLRDR + + D E+ M+K +F K+G++MKREDLV K+K+
Sbjct: 2 VLSEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKK 61
Query: 276 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+++ DQ+Y+FFPDE KVGVKTMK YTNRM SENV+RAILV
Sbjct: 62 DNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILV 101
[6][TOP]
>UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9RKM1_RICCO
Length = 225
Score = 135 bits (340), Expect = 1e-30
Identities = 71/123 (57%), Positives = 89/123 (72%), Gaps = 20/123 (16%)
Frame = +3
Query: 99 LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 278
L+E+E+KRL+RI++T+MQML+DR Y + DSE+ +TK QF K+GDNMKREDLV K+KR
Sbjct: 3 LSEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSKR- 61
Query: 279 DNSD--------------------QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
D SD Q+Y+FFP+E KVGVKTMK YTNRMKSENVFRAILVV
Sbjct: 62 DGSDSFYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVV 121
Query: 399 HRT 407
++
Sbjct: 122 QQS 124
[7][TOP]
>UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis
guineensis RepID=B3TLL2_ELAGV
Length = 204
Score = 130 bits (327), Expect = 5e-29
Identities = 59/102 (57%), Positives = 82/102 (80%)
Frame = +3
Query: 99 LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 278
++E+++ RL+RI++T+MQMLRDRGY + D E+ M K QF+ K G+ +KREDLV KAK+N
Sbjct: 1 MSEDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKN 60
Query: 279 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
D +DQ+Y+FFP++AKVGVK +K Y RMK+ENV R ILVV +
Sbjct: 61 DPADQIYVFFPNDAKVGVKQIKQYVERMKAENVTRGILVVQQ 102
[8][TOP]
>UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWG5_PHYPA
Length = 208
Score = 129 bits (324), Expect = 1e-28
Identities = 60/100 (60%), Positives = 83/100 (83%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
+E+ RLYRI+KT+M+MLRDR Y +AD ELT++K+QF K+GD KREDLV K +R++N
Sbjct: 7 DEQSARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNN 66
Query: 285 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
++ +++FFP+EAKVGVKT+K Y +RMK+ENV RAILVV +
Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQ 106
[9][TOP]
>UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RKG6_PHYPA
Length = 208
Score = 126 bits (317), Expect = 7e-28
Identities = 59/100 (59%), Positives = 81/100 (81%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
+E+ RLYRI+KT+M+MLRDR Y +A+ EL TK++F K+GD KREDLV K KR++N
Sbjct: 7 DEQCARLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNN 66
Query: 285 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
++ +++FFP+EAKVGVKT+K Y +RMK+ENV RAILVV +
Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQ 106
[10][TOP]
>UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LR68_PICSI
Length = 194
Score = 123 bits (309), Expect = 6e-27
Identities = 57/103 (55%), Positives = 80/103 (77%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
M +E+ +L+RI++T++QML DR Y + D E+ TK+QF+ K G++ K+EDLV KAKR
Sbjct: 1 MALDEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKR 60
Query: 276 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
N S+Q+++FFP+EAKVGVK++K Y RMKSE VFRAILVV +
Sbjct: 61 NSPSEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQ 103
[11][TOP]
>UniRef100_A9NTD1 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=A9NTD1_PICSI
Length = 191
Score = 123 bits (309), Expect = 6e-27
Identities = 57/103 (55%), Positives = 80/103 (77%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
M +E+ +L+RI++T++QML DR Y + D E+ TK+QF+ K G++ K+EDLV KAKR
Sbjct: 1 MALDEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKR 60
Query: 276 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
N S+Q+++FFP+EAKVGVK++K Y RMKSE VFRAILVV +
Sbjct: 61 NSPSEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQ 103
[12][TOP]
>UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9ETS9_ORYSJ
Length = 210
Score = 114 bits (285), Expect = 3e-24
Identities = 54/104 (51%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Frame = +3
Query: 96 MLTEEELK-RLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAK 272
++TEE + RL RI++T+MQMLRDRGY + + EL M ++ F+RK+G++ REDL+ K K
Sbjct: 5 LVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYK 64
Query: 273 RNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+ND SDQ+Y+FFP++ KVG+K +K Y MK+ENV RA+LV+ +
Sbjct: 65 KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQ 108
[13][TOP]
>UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ
Length = 210
Score = 114 bits (285), Expect = 3e-24
Identities = 54/104 (51%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Frame = +3
Query: 96 MLTEEELK-RLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAK 272
++TEE + RL RI++T+MQMLRDRGY + + EL M ++ F+RK+G++ REDL+ K K
Sbjct: 5 LVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYK 64
Query: 273 RNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+ND SDQ+Y+FFP++ KVG+K +K Y MK+ENV RA+LV+ +
Sbjct: 65 KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQ 108
[14][TOP]
>UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays
RepID=B4FU06_MAIZE
Length = 210
Score = 112 bits (281), Expect = 1e-23
Identities = 52/100 (52%), Positives = 74/100 (74%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
E + RLYRI++T+MQMLRDRGY + D EL +++ F+RK G++ REDL+ K K+ND
Sbjct: 9 EATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDP 68
Query: 285 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
SDQ+Y+FFP++ KVG+K +K Y M ENV RA+LV+ +
Sbjct: 69 SDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQ 108
[15][TOP]
>UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XUF8_ORYSJ
Length = 205
Score = 108 bits (270), Expect = 2e-22
Identities = 48/103 (46%), Positives = 75/103 (72%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
M +EEE RL+RI++T+MQMLRDRGY + + ++ + + F+ + GD + R+ LV + K+
Sbjct: 1 MASEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKK 60
Query: 276 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
++ +DQ+Y+FFP +AK GVKT++ Y RMK E+VF ILVV +
Sbjct: 61 DNGADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQ 103
[16][TOP]
>UniRef100_B7EQI7 cDNA clone:J023098I05, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=B7EQI7_ORYSJ
Length = 167
Score = 108 bits (270), Expect = 2e-22
Identities = 48/103 (46%), Positives = 75/103 (72%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
M +EEE RL+RI++T+MQMLRDRGY + + ++ + + F+ + GD + R+ LV + K+
Sbjct: 1 MASEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKK 60
Query: 276 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
++ +DQ+Y+FFP +AK GVKT++ Y RMK E+VF ILVV +
Sbjct: 61 DNGADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQ 103
[17][TOP]
>UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa
RepID=A3AV22_ORYSJ
Length = 217
Score = 108 bits (270), Expect = 2e-22
Identities = 48/103 (46%), Positives = 75/103 (72%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
M +EEE RL+RI++T+MQMLRDRGY + + ++ + + F+ + GD + R+ LV + K+
Sbjct: 1 MASEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKK 60
Query: 276 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
++ +DQ+Y+FFP +AK GVKT++ Y RMK E+VF ILVV +
Sbjct: 61 DNGADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQ 103
[18][TOP]
>UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FGM1_MAIZE
Length = 206
Score = 106 bits (264), Expect = 9e-22
Identities = 46/100 (46%), Positives = 75/100 (75%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
++E+ RL+RI++T+ +MLRDRGY + D ++ + + +FI ++G+ ++R++L K N
Sbjct: 5 DDEISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATKLNGP 64
Query: 285 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
SDQ+Y+FFP+EAK GVKT++ Y +MK+ENVF ILVV +
Sbjct: 65 SDQIYVFFPNEAKPGVKTIRNYVEKMKNENVFAGILVVQQ 104
[19][TOP]
>UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MXV4_9CHLO
Length = 206
Score = 102 bits (253), Expect = 2e-20
Identities = 48/101 (47%), Positives = 69/101 (68%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
M + E++ +L+RI KT+ +ML RGY + EL K F +GD+ KRE L + +R
Sbjct: 1 MSSSEKVTKLFRIHKTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRR 60
Query: 276 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D S+ +++FFP+E KVGVKT+K Y RMK E+VFRAI+VV
Sbjct: 61 DDPSENIFVFFPEEEKVGVKTIKEYAKRMKDESVFRAIIVV 101
[20][TOP]
>UniRef100_UPI000194DF40 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide E, 25kDa
n=1 Tax=Taeniopygia guttata RepID=UPI000194DF40
Length = 119
Score = 101 bits (252), Expect = 2e-20
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQ 108
[21][TOP]
>UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2
Tax=Neognathae RepID=B5FX59_TAEGU
Length = 210
Score = 101 bits (252), Expect = 2e-20
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQ 108
[22][TOP]
>UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio
rerio RepID=Q6DEG5_DANRE
Length = 210
Score = 101 bits (252), Expect = 2e-20
Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVV 106
[23][TOP]
>UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Rana catesbeiana RepID=C1C3Q7_RANCA
Length = 210
Score = 101 bits (252), Expect = 2e-20
Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RAI+VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQ 108
[24][TOP]
>UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1
Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG
Length = 210
Score = 101 bits (251), Expect = 3e-20
Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVV 106
[25][TOP]
>UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Anoplopoma fimbria RepID=C3KI95_9PERC
Length = 210
Score = 101 bits (251), Expect = 3e-20
Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVV 106
[26][TOP]
>UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BIS3_OSMMO
Length = 210
Score = 101 bits (251), Expect = 3e-20
Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVV 106
[27][TOP]
>UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus
RepID=Q28HF5_XENTR
Length = 210
Score = 100 bits (250), Expect = 4e-20
Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQ 108
[28][TOP]
>UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri
RepID=A6N9W6_ORNPR
Length = 210
Score = 100 bits (250), Expect = 4e-20
Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T QF ++ GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFPDE K+G+KT+K Y RM+ EN+ RAI+VV +
Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQ 108
[29][TOP]
>UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1
Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE
Length = 206
Score = 100 bits (249), Expect = 5e-20
Identities = 44/96 (45%), Positives = 70/96 (72%)
Frame = +3
Query: 108 EELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNS 287
+ L RL+R+++T +QML DRGY ++ E+ TK QF + G+N +++DL L +++D +
Sbjct: 2 DNLTRLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPT 61
Query: 288 DQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+Q+++FFP+E KVGVKT+K+ RMK E V RAI+V
Sbjct: 62 EQIFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMV 97
[30][TOP]
>UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186E78B
Length = 210
Score = 100 bits (248), Expect = 7e-20
Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFPD+ K+G+KT+K Y RM+ EN+ RAI+VV +
Sbjct: 64 HNDDPTDQMFVFFPDDPKIGIKTIKTYCQRMQEENIHRAIIVVQQ 108
[31][TOP]
>UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
isoform 1 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A3E0E
Length = 208
Score = 100 bits (248), Expect = 7e-20
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+K+Y RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
[32][TOP]
>UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA
polymerases I, II, and III subunit ABC1) (DNA-directed
RNA polymerase II subunit E) (RPB5) (DNA-directed RNA
polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis
lupus familiaris RepID=UPI0000EB19D6
Length = 212
Score = 100 bits (248), Expect = 7e-20
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+K+Y RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
[33][TOP]
>UniRef100_UPI00005A3E0F PREDICTED: similar to DNA-directed RNA polymerase II 23 kDa
polypeptide (RPB25) (RPB5) (RPABC1) isoform 2 n=1
Tax=Canis lupus familiaris RepID=UPI00005A3E0F
Length = 162
Score = 100 bits (248), Expect = 7e-20
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+K+Y RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
[34][TOP]
>UniRef100_Q8R0H0 Polr2e protein n=1 Tax=Mus musculus RepID=Q8R0H0_MOUSE
Length = 162
Score = 100 bits (248), Expect = 7e-20
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+K+Y RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
[35][TOP]
>UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Pongo abelii RepID=RPAB1_PONAB
Length = 210
Score = 100 bits (248), Expect = 7e-20
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+K+Y RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
[36][TOP]
>UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3
Tax=Murinae RepID=RPAB1_MOUSE
Length = 210
Score = 100 bits (248), Expect = 7e-20
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+K+Y RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
[37][TOP]
>UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Homo sapiens RepID=RPAB1_HUMAN
Length = 210
Score = 100 bits (248), Expect = 7e-20
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+K+Y RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
[38][TOP]
>UniRef100_UPI000051A7F2 PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
RepID=UPI000051A7F2
Length = 179
Score = 99.8 bits (247), Expect = 9e-20
Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQL++FFPDE K+G+KT+K Y RM+ E + RAI+VV +
Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQ 108
[39][TOP]
>UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
RepID=UPI00003C0CAC
Length = 210
Score = 99.8 bits (247), Expect = 9e-20
Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQL++FFPDE K+G+KT+K Y RM+ E + RAI+VV +
Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQ 108
[40][TOP]
>UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Esox lucius RepID=C1BZT4_ESOLU
Length = 210
Score = 99.8 bits (247), Expect = 9e-20
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLAA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RA +VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVV 106
[41][TOP]
>UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia
vitripennis RepID=UPI00015B5456
Length = 210
Score = 99.4 bits (246), Expect = 1e-19
Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQL++FFPDE K+G+KT+K Y RM+ E + RAI+VV
Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVV 106
[42][TOP]
>UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Salmo salar RepID=B5X8S7_SALSA
Length = 210
Score = 99.4 bits (246), Expect = 1e-19
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RA +VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVV 106
[43][TOP]
>UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
n=1 Tax=Macaca mulatta RepID=UPI0000D9E960
Length = 278
Score = 99.0 bits (245), Expect = 1e-19
Identities = 46/105 (43%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EE+ RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEDTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+K+Y RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
[44][TOP]
>UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae
RepID=B0X7A5_CULQU
Length = 210
Score = 99.0 bits (245), Expect = 1e-19
Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
+ E +L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL+ L A
Sbjct: 4 DAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFPDE K+G+KT+K Y RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVV 106
[45][TOP]
>UniRef100_B5XGU7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Salmo salar RepID=B5XGU7_SALSA
Length = 159
Score = 98.2 bits (243), Expect = 2e-19
Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
+EE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RA +VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVV 106
[46][TOP]
>UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2
Tax=Euteleostei RepID=B5X957_SALSA
Length = 210
Score = 98.2 bits (243), Expect = 2e-19
Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
+EE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E KVG+KT+KMY RM+ EN+ RA +VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVV 106
[47][TOP]
>UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3ZQF0_BRAFL
Length = 210
Score = 98.2 bits (243), Expect = 2e-19
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E+E +L+RI+KT+MQ+ DRGY + EL QF + GD R+DLV L A
Sbjct: 4 EQETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FF DE K+G+KT+KMY RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFADEPKIGIKTIKMYCQRMQEENISRAIIVV 106
[48][TOP]
>UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI
Length = 210
Score = 98.2 bits (243), Expect = 2e-19
Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E K+G+KT+K Y RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVV 106
[49][TOP]
>UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO
Length = 210
Score = 98.2 bits (243), Expect = 2e-19
Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E K+G+KT+K Y RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVV 106
[50][TOP]
>UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR
Length = 210
Score = 98.2 bits (243), Expect = 2e-19
Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E K+G+KT+K Y RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVV 106
[51][TOP]
>UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME
Length = 210
Score = 98.2 bits (243), Expect = 2e-19
Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E K+G+KT+K Y RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVV 106
[52][TOP]
>UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN
Length = 210
Score = 98.2 bits (243), Expect = 2e-19
Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E K+G+KT+K Y RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVV 106
[53][TOP]
>UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona
intestinalis RepID=UPI000180C3C9
Length = 210
Score = 97.4 bits (241), Expect = 4e-19
Identities = 48/106 (45%), Positives = 70/106 (66%), Gaps = 5/106 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E RL+RI+KT+MQ+ DRGY + EL + ++F + GD R+DL L A
Sbjct: 4 EAETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHRT 407
+D +DQ+++FFP+E KVGVKT+K Y RM+ EN+ RAI+VV ++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGVKTIKTYCQRMQEENIQRAIIVVQQS 109
[54][TOP]
>UniRef100_B7T1F2 RNA polymerase II (Fragment) n=1 Tax=Oreochromis niloticus
RepID=B7T1F2_ORENI
Length = 108
Score = 97.4 bits (241), Expect = 4e-19
Identities = 46/98 (46%), Positives = 67/98 (68%), Gaps = 5/98 (5%)
Frame = +3
Query: 120 RLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKAKRNDN 284
RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A +D
Sbjct: 1 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60
Query: 285 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+DQ+++FFP+E KVG+KT+KMY RM+ EN+ RAI+VV
Sbjct: 61 TDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVV 98
[55][TOP]
>UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RWP8_OSTLU
Length = 205
Score = 97.4 bits (241), Expect = 4e-19
Identities = 47/100 (47%), Positives = 66/100 (66%)
Frame = +3
Query: 99 LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 278
++ ++ RL+R++KT+ +ML RGY ++ EL F G+ KRE L L KR+
Sbjct: 1 MSNDKRTRLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRD 60
Query: 279 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
D S+ +++FFPDE KVGVKT+K RMK ENVFRAI+VV
Sbjct: 61 DPSENIFVFFPDEEKVGVKTIKDLAKRMKDENVFRAIIVV 100
[56][TOP]
>UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS
Length = 210
Score = 97.4 bits (241), Expect = 4e-19
Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF GD R DL+ L A
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP+E K+G+KT+K Y RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVV 106
[57][TOP]
>UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D56A05
Length = 210
Score = 97.1 bits (240), Expect = 6e-19
Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL L A
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTILVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFPDE K+G+K +K Y RM+ EN+ RAI+VV +
Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKAIKTYCQRMQDENIHRAIIVVQQ 108
[58][TOP]
>UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000587A08
Length = 210
Score = 96.7 bits (239), Expect = 7e-19
Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 5/106 (4%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVT 260
M E E RL+R+++T+MQ+ DRGY + EL T +QF + GD R+DL
Sbjct: 1 MNDEAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTV 60
Query: 261 LKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
L A +D +DQ+++FFP+E KVG+KT+K Y RM+ EN+ RAI+ V
Sbjct: 61 LVAHNDDPTDQMFVFFPEEKKVGMKTIKAYCQRMQEENITRAIITV 106
[59][TOP]
>UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1
Tax=Ostreococcus tauri RepID=Q01A87_OSTTA
Length = 1124
Score = 96.3 bits (238), Expect = 9e-19
Identities = 44/110 (40%), Positives = 72/110 (65%)
Frame = +3
Query: 69 VSIHNLVKKMLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKRE 248
++++ ++ ++ + RL+R++KT+ +ML RGY ++ EL F + G+ KR+
Sbjct: 910 ITLNGNRREKMSSDRRNRLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRD 969
Query: 249 DLVTLKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
L L +++D S+ +++FFPDE KVGVKT+K RMK ENVFRAI+VV
Sbjct: 970 SLTILAPRKDDPSENIFVFFPDEEKVGVKTIKDLAKRMKEENVFRAIIVV 1019
[60][TOP]
>UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI
Length = 210
Score = 95.5 bits (236), Expect = 2e-18
Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL+ L A
Sbjct: 4 ECESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E K+G+KT+K Y RM+ E + RAI+VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCQRMQEETITRAIIVVQQ 108
[61][TOP]
>UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio
RepID=UPI000056951D
Length = 211
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/104 (46%), Positives = 69/104 (66%), Gaps = 6/104 (5%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGD-----NMKREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T +F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFP-DEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP +E KVG+KT+KMY RM+ EN+ RA++VV
Sbjct: 64 HNDDPTDQMFVFFPVEELKVGIKTIKMYCQRMQEENITRAVIVV 107
[62][TOP]
>UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Bos taurus RepID=RPAB1_BOVIN
Length = 210
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 5/105 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + L T ++F + G +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D +DQ+++FFP+E KVG+KT+K+Y RM+ EN+ RA++VV +
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
[63][TOP]
>UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE
Length = 210
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVT 260
M EEEL +++RI+KT++QM DRGY + EL T Q F GD R D+
Sbjct: 1 MNDEEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITL 60
Query: 261 LKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHRT 407
L A +D +DQ+++FFP+E KVG+K +K Y RM+ E+++RAI+VV +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKDIKRYCLRMQEESIYRAIIVVQNS 109
[64][TOP]
>UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5E0K0_DROPS
Length = 210
Score = 93.6 bits (231), Expect = 6e-18
Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVT 260
M EEEL +++RI+KT++QM DRGY + EL T Q F GD R D+
Sbjct: 1 MNDEEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITL 60
Query: 261 LKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHRT 407
L A +D +DQ+++FFP E KVG+K +K Y RM+ E+++RAI+VV +
Sbjct: 61 LVAHNDDPTDQMFVFFPQEPKVGIKDIKRYCLRMQEESIYRAIIVVQNS 109
[65][TOP]
>UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO
Length = 204
Score = 91.7 bits (226), Expect = 2e-17
Identities = 45/100 (45%), Positives = 65/100 (65%)
Frame = +3
Query: 108 EELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNS 287
E+ RL+RI+KT+ +ML RGY +A +EL K F + G++ +R+ L R D +
Sbjct: 3 EKKTRLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDPT 62
Query: 288 DQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHRT 407
+++FFPDE KVGVKT+K Y RMK E V RAI+VV ++
Sbjct: 63 QHIFVFFPDEEKVGVKTIKEYAKRMKDEQVNRAIIVVQQS 102
[66][TOP]
>UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL
Length = 211
Score = 90.5 bits (223), Expect = 5e-17
Identities = 44/103 (42%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E RL+RI+KT++QM+ DRGY +A EL + F ++GD R DL L A
Sbjct: 5 ELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVA 64
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP++AK+G+KT+K +M+ +N+ RAI+VV
Sbjct: 65 HNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVV 107
[67][TOP]
>UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum
RepID=Q5DDM1_SCHJA
Length = 206
Score = 89.7 bits (221), Expect = 9e-17
Identities = 41/101 (40%), Positives = 67/101 (66%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
ML + E +L+RI+KT+++M +DRGY + EL + + F GD R+DL+ +
Sbjct: 1 MLDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHE 60
Query: 276 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
D +D LY+FFP+E KV +KT++ Y N+M+ ++ +RAILV+
Sbjct: 61 EDPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVL 101
[68][TOP]
>UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide E, 25kDa n=1 Tax=Pan troglodytes
RepID=UPI0000E24E5A
Length = 230
Score = 89.0 bits (219), Expect = 2e-16
Identities = 41/95 (43%), Positives = 63/95 (66%), Gaps = 5/95 (5%)
Frame = +3
Query: 135 QKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTLKAKRNDNSDQLY 299
+KT+MQ+ DRGY + EL T ++F + GD +R DL L A +D +DQ++
Sbjct: 34 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 93
Query: 300 IFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+FFP+E KVG+KT+K+Y RM+ EN+ RA++VV +
Sbjct: 94 VFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQ 128
[69][TOP]
>UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caligus clemensi RepID=C1C1G9_9MAXI
Length = 210
Score = 89.0 bits (219), Expect = 2e-16
Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L++++KT+M + DRGY + EL T+ QF + GD R DL L A
Sbjct: 4 ESETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTILVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP++ K+GVK ++ Y RM+ EN+ RAI+VV
Sbjct: 64 HNDDPTDQMFVFFPEDPKIGVKHIRTYCKRMQEENITRAIIVV 106
[70][TOP]
>UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri
RepID=C6K8L9_CAEBE
Length = 211
Score = 88.2 bits (217), Expect = 3e-16
Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E RL+RI+KT++QM+ DRGY +A EL F GD R DL L A
Sbjct: 5 ELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLTILVA 64
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFPD+ K+G+KT+K +M+ +N+ RAI+VV
Sbjct: 65 HNDDPADQMFVFFPDDTKIGIKTIKAICQQMQEQNISRAIIVV 107
[71][TOP]
>UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XGH1_CAEBR
Length = 211
Score = 88.2 bits (217), Expect = 3e-16
Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E RL+RI+KT++QM+ DRGY +A EL + F GD R DL L A
Sbjct: 5 ELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVA 64
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFP++ K+G+KT+K +M+ +N+ RAI+VV
Sbjct: 65 HNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVV 107
[72][TOP]
>UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira
pseudonana CCMP1335 RepID=B8C1Q1_THAPS
Length = 226
Score = 87.0 bits (214), Expect = 6e-16
Identities = 43/96 (44%), Positives = 62/96 (64%)
Frame = +3
Query: 111 ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 290
E RL+R+ KT+ ML RGY ++ MT F ++ G+ RE L L K +D ++
Sbjct: 27 EASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETN 86
Query: 291 QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
QL++FFP++ KVGVK +K+ T+RMK ENV AILV+
Sbjct: 87 QLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVL 122
[73][TOP]
>UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1
Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA
Length = 208
Score = 87.0 bits (214), Expect = 6e-16
Identities = 39/100 (39%), Positives = 66/100 (66%)
Frame = +3
Query: 99 LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 278
+ + E +L+RI+KT+++M +DRGY + EL + + F GD R+DL+ +
Sbjct: 4 MDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEE 63
Query: 279 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
D +D LY+FFP+E KV +KT++ Y N+M+ ++ +RAILV+
Sbjct: 64 DPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVL 103
[74][TOP]
>UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI
Length = 210
Score = 86.7 bits (213), Expect = 7e-16
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 269
E E +L++++KT+M + DRGY + EL T QF + GD R DL L A
Sbjct: 4 EAENYKLWKVRKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVA 63
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+D +DQ+++FFPD+ K+G+K ++ Y RM+ EN+ RAI++V
Sbjct: 64 HNDDPTDQMFVFFPDDPKIGIKHIRTYCKRMQEENITRAIILV 106
[75][TOP]
>UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5DLP1_DROPS
Length = 320
Score = 86.7 bits (213), Expect = 7e-16
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 5/106 (4%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVT 260
M E E+ +L+ I+KTL +M DRGY + +EL T +QF GD R DL
Sbjct: 1 MNDEAEVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTM 60
Query: 261 LKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
L + +D +++ +FFP+E KV VKT+K Y +RM+ E + RAILVV
Sbjct: 61 LLSHADDPKNRMLVFFPEEPKVAVKTIKAYAHRMEGEGIHRAILVV 106
[76][TOP]
>UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S3Q9_TRIAD
Length = 210
Score = 86.7 bits (213), Expect = 7e-16
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 5/106 (4%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVT----- 260
M EEE +L+RI+KT+MQM DRGY ++ EL T QF + M V
Sbjct: 1 MEDEEEAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQVRGLLSM 60
Query: 261 LKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
L +D ++QL++FFPDE KVG+ T+K Y RM+ EN+ RAI+++
Sbjct: 61 LVHHIDDPTEQLFVFFPDEPKVGINTIKKYCQRMQRENINRAIIII 106
[77][TOP]
>UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7FSY0_PHATR
Length = 228
Score = 84.3 bits (207), Expect = 4e-15
Identities = 39/96 (40%), Positives = 65/96 (67%)
Frame = +3
Query: 111 ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 290
E RL+R+ +T+ ML RGY + + +T F + G+ RE+L L K +D+++
Sbjct: 29 EAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTN 88
Query: 291 QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
QL+IFFP++ KVGVK +K+YT+RM++E+V AI+++
Sbjct: 89 QLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIIL 124
[78][TOP]
>UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE
Length = 213
Score = 81.3 bits (199), Expect = 3e-14
Identities = 42/100 (42%), Positives = 68/100 (68%), Gaps = 5/100 (5%)
Frame = +3
Query: 120 RLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKRE----DLVTLKAKRNDNS 287
RL+R++KT+ ++L+DRGY +A L TK+ F ++ + +R+ DL+ L +K++D S
Sbjct: 12 RLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71
Query: 288 DQLYIFFPDEAK-VGVKTMKMYTNRMKSENVFRAILVVHR 404
DQL +FFPDE K VGVK ++ +M+ + + RAILVV +
Sbjct: 72 DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQ 111
[79][TOP]
>UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE
Length = 213
Score = 80.9 bits (198), Expect = 4e-14
Identities = 42/100 (42%), Positives = 68/100 (68%), Gaps = 5/100 (5%)
Frame = +3
Query: 120 RLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKRE----DLVTLKAKRNDNS 287
RL+R++KT+ ++L+DRGY +A L TK+ F ++ + +R+ DL+ L +K++D S
Sbjct: 12 RLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71
Query: 288 DQLYIFFPDEAK-VGVKTMKMYTNRMKSENVFRAILVVHR 404
DQL +FFPDE K VGVK ++ +M+ + + RAILVV +
Sbjct: 72 DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQ 111
[80][TOP]
>UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SWJ6_PHYPA
Length = 211
Score = 77.8 bits (190), Expect = 3e-13
Identities = 39/100 (39%), Positives = 67/100 (67%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
+ + LY+++K +++M+RD Y +AD+ELT+T +QF K+ ++ K+EDL+ LK K ++N
Sbjct: 7 DRQSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLMILKPKSSNN 66
Query: 285 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
++ + +VG+KT+K RMK ENV RA+ VV +
Sbjct: 67 AEH-GPKTGGKGRVGLKTIKTCKKRMKRENVPRAVFVVQQ 105
[81][TOP]
>UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE
Length = 207
Score = 77.0 bits (188), Expect = 6e-13
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Frame = +3
Query: 120 RLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKAKRNDN 284
+ +RI+KT+MQ+ G + D EL T +QF + GD R DL L A +D
Sbjct: 9 KFWRIRKTVMQVCN--GLILRD-ELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHNDDP 65
Query: 285 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVV 398
+DQ+++FFP+E KVG+KT+K Y RM+ EN+ RA++VV
Sbjct: 66 TDQMFVFFPEEPKVGIKTIKQYCQRMQEENISRAVIVV 103
[82][TOP]
>UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1
Tax=Dictyostelium discoideum RepID=RPAB1_DICDI
Length = 197
Score = 74.7 bits (182), Expect = 3e-12
Identities = 39/99 (39%), Positives = 58/99 (58%)
Frame = +3
Query: 108 EELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNS 287
E++ RL +I+KT++QML DR Y I E ++ F+ RE+L K++D +
Sbjct: 2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFV-------SRENLTMYCVKKDDPT 54
Query: 288 DQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
D +Y+FFPD KVGV +K Y + MK RAI+VV +
Sbjct: 55 DSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQ 93
[83][TOP]
>UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LUR5_ARATH
Length = 178
Score = 74.3 bits (181), Expect = 4e-12
Identities = 34/59 (57%), Positives = 47/59 (79%)
Frame = +3
Query: 99 LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
L +EE+KRL+ +Q+TLMQML+DRGY I SE+TMT ++FI K+GDNMKR L+ K ++
Sbjct: 3 LMDEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDNMKRSLLLLSKLRK 61
[84][TOP]
>UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1
Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH
Length = 210
Score = 72.0 bits (175), Expect = 2e-11
Identities = 33/102 (32%), Positives = 70/102 (68%), Gaps = 4/102 (3%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKR--EDLVTLKAKRN 278
++E+ R++++++T++QMLRDRGY I +S+L + +++F+++ M + ++ + + A +
Sbjct: 5 DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64
Query: 279 DN-SDQLYIFFPDEAKVGVKTMKM-YTNRMKSENVFRAILVV 398
N +D++Y+F+P+ KVGV +K +M+ + V R I+VV
Sbjct: 65 PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVV 106
[85][TOP]
>UniRef100_B4GWF6 GL16452 n=1 Tax=Drosophila persimilis RepID=B4GWF6_DROPE
Length = 126
Score = 71.6 bits (174), Expect = 2e-11
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Frame = +3
Query: 93 KMLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLV 257
+M E E+ +L+ I+KT+ +M DRGY + EL T +QF GD R DL
Sbjct: 4 EMNDEAEIYKLWHIRKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLT 63
Query: 258 TLKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMK 365
+ +D +++ +FFP+E KV V+T+K + NRM+
Sbjct: 64 MVLTHADDPKNRMLVFFPEEPKVAVRTIKAFANRMR 99
[86][TOP]
>UniRef100_B5LZ31 RNA polymerase II (Fragment) n=1 Tax=Psetta maxima
RepID=B5LZ31_PSEMX
Length = 87
Score = 70.5 bits (171), Expect = 6e-11
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Frame = +3
Query: 189 ELTMTKQQFIRKHGDNM-----KREDLVTLKAKRNDNSDQLYIFFPDEAKVGVKTMKMYT 353
EL T +F + GD +R DL L A +D +DQ+++FFP+E KVG+KT+KMY
Sbjct: 3 ELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYC 62
Query: 354 NRMKSENVFRAILVV 398
RM+ EN+ RAI+VV
Sbjct: 63 QRMQEENITRAIIVV 77
[87][TOP]
>UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8NU15_COPC7
Length = 273
Score = 68.2 bits (165), Expect = 3e-10
Identities = 33/107 (30%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM---KREDLVTLK 266
M +E RL+++ KT+ ++++DRG+ ++D E+ M+ ++F + +G+NM R L
Sbjct: 66 MADGDETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYT 125
Query: 267 AKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHRT 407
R + SDQ++++F +E VGVK M+ M+ + + R I++ T
Sbjct: 126 HHRLNPSDQIFVYFTEEPNVGVKAMRKLLGIMEEKAIQRGIIIFPAT 172
[88][TOP]
>UniRef100_Q8CI23 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Mus
musculus RepID=Q8CI23_MOUSE
Length = 96
Score = 67.8 bits (164), Expect = 4e-10
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGD-----NMKREDLVTLKA 269
EEE RL++I+KT+MQ+ DRGY + EL T ++F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 270 KRNDNSDQLYIFFPDEA 320
+D +DQ+++FFP EA
Sbjct: 64 HNDDPTDQMFVFFPGEA 80
[89][TOP]
>UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D9Y7_LACBS
Length = 208
Score = 66.6 bits (161), Expect = 8e-10
Identities = 29/99 (29%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Frame = +3
Query: 108 EELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDN---MKREDLVTLKAKRN 278
+E +L+++ +T+ ++++DRG+ ++D E+ M Q+F + +N + R L R
Sbjct: 5 DETAKLWKVNRTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYTTSRT 64
Query: 279 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+++DQ+++FF +E VGVKTM+ ++ +++ R I+V
Sbjct: 65 NSTDQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIV 103
[90][TOP]
>UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi
strain H RepID=B3L6X3_PLAKH
Length = 205
Score = 64.3 bits (155), Expect = 4e-09
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-REDLVTLKAKRND 281
E+ + R Y+ +KT +ML DRGY I E F + +N K R + + + +ND
Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61
Query: 282 NSDQLYIFFPDEA-KVGVKTMKMYTNRMKSENVFRAILVVHRT 407
S+++ ++F DE K GVK ++ T +M +++ RAILV T
Sbjct: 62 ESNKIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNT 104
[91][TOP]
>UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO
Length = 205
Score = 63.9 bits (154), Expect = 5e-09
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDN-MKREDLVTLKAKRND 281
E+ +RL+R +KT ML+DRGY ++ E + F+++ +N R ++ + + + D
Sbjct: 2 EDSTRRLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVD 61
Query: 282 NSDQLYIFFPDEA-KVGVKTMKMYTNRMKSENVFRAILV 395
+++ ++F DE K GVK ++ T RM+ N+ RAILV
Sbjct: 62 PDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILV 100
[92][TOP]
>UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE
Length = 210
Score = 63.9 bits (154), Expect = 5e-09
Identities = 36/100 (36%), Positives = 58/100 (58%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
E E RLY++ TL QM DRG+ + + MT + +G+ R++L K +D+
Sbjct: 4 EAERYRLYKVWITLKQMCHDRGFRVTQEMMNMTFDTWNEIYGE-YPRKELSFPVQKVDDD 62
Query: 285 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVHR 404
+D L++FFP+ V V +K +R+KS+N+ RAI+V R
Sbjct: 63 NDGLFVFFPESPDVKVAAIKSLYDRLKSDNLRRAIIVYQR 102
[93][TOP]
>UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DNB3_LACTC
Length = 215
Score = 63.5 bits (153), Expect = 7e-09
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN-- 278
E + RL+R KT+ +M+RDRGYFI E+ ++ + F K+ D+M R + + N
Sbjct: 6 ERNVSRLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPV 65
Query: 279 -------DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
N L++ F DEA VG+KTMK + + +N I V
Sbjct: 66 EEALEKFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTGIFV 111
[94][TOP]
>UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TEH4_VANPO
Length = 215
Score = 63.2 bits (152), Expect = 9e-09
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Frame = +3
Query: 102 TEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRND 281
+E + RL+R +T+ +M+RDRGYFIA E+ ++ + F K+ D+M R + + N
Sbjct: 5 SERSISRLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYCDSMGRPQRKMMSFQANP 64
Query: 282 NSD---------QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+ L++ F DE VGVKTMK + ++ +N I V
Sbjct: 65 TEETMEKFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFV 111
[95][TOP]
>UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI
Length = 205
Score = 62.4 bits (150), Expect = 2e-08
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-REDLVTLKAKRND 281
E+ + R Y+ +KT +ML DRGY I E F + +N K R + + + +ND
Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61
Query: 282 NSDQLYIFFPDE-AKVGVKTMKMYTNRMKSENVFRAILVVHRT 407
++++ ++F DE K GVK ++ T +M +++ RAILV T
Sbjct: 62 ANNKIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNT 104
[96][TOP]
>UniRef100_Q4P7S7 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P7S7_USTMA
Length = 554
Score = 62.0 bits (149), Expect = 2e-08
Identities = 29/103 (28%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKH---GDNMKREDLVTLK 266
M + E RL+R+ +T+ +++RDRGY +AD E+++ + F ++ G ++ R L
Sbjct: 1 MEDDRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFT 60
Query: 267 AKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+ +L++F+ + VGVKTM+ + + M+ ++ R I++
Sbjct: 61 EHGEHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIII 103
[97][TOP]
>UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DR69_ZYGRC
Length = 215
Score = 62.0 bits (149), Expect = 2e-08
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
E + RL+R KT+ +M++DRGYFIA E+ + + F K+ D+M R + + N
Sbjct: 6 ERNISRLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYCDSMGRPQRKMMSFQSNPT 65
Query: 285 SD---------QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+ L++ F DE VGVKTMK + ++ +N I V
Sbjct: 66 EESIAKFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFV 111
[98][TOP]
>UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Kluyveromyces lactis RepID=RPAB1_KLULA
Length = 215
Score = 62.0 bits (149), Expect = 2e-08
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
E + RL+R KT+ +M+RDRGYFI E+ ++ + F K+ D+M + + + N
Sbjct: 6 ERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPT 65
Query: 285 SD---------QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+ L++ F DEA VGVKTMK + + +N I +
Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFI 111
[99][TOP]
>UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N141_THEPA
Length = 205
Score = 61.6 bits (148), Expect = 3e-08
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-REDLVTLKAKRND 281
++E RL+R ++T +ML DRGYFI E T +F ++ + K R ++ + ++R
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTA 61
Query: 282 NSDQLYIFFPDE-AKVGVKTMKMYTNRMKSENVFRAILV 395
+ ++L ++F DE K GVK ++ T RM+ ++ RAILV
Sbjct: 62 SENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILV 100
[100][TOP]
>UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Candida glabrata RepID=RPAB1_CANGA
Length = 215
Score = 60.8 bits (146), Expect = 4e-08
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
+ + RL+R +T+ +M+RDRGYFIA EL +T + F K+ D+M R + + N
Sbjct: 6 DRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANPT 65
Query: 285 SDQ---------LYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+ L++ F DE VGVKTMK + ++ + I +
Sbjct: 66 EESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFI 111
[101][TOP]
>UniRef100_Q4YN15 DNA-directed RNA polymerase 2, putative (Fragment) n=1
Tax=Plasmodium berghei RepID=Q4YN15_PLABE
Length = 107
Score = 60.5 bits (145), Expect = 6e-08
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-REDLVTLKAKRND 281
E+ + R Y+ +KT +ML DRGY I E F +N K R + + + +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61
Query: 282 NSDQLYIFFPDEA-KVGVKTMKMYTNRMKSENVFRAILVVHRT 407
++++ ++F DE K GVK ++ T +M +++ RAILV T
Sbjct: 62 ANNKIIVYFVDEVKKTGVKPLRELTEKMDEKSIQRAILVTQNT 104
[102][TOP]
>UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica
HM-1:IMSS RepID=C4LW54_ENTHI
Length = 204
Score = 60.5 bits (145), Expect = 6e-08
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Frame = +3
Query: 108 EELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQF---IRKHGDNMKREDLVTLKAKRN 278
E + +YR KT+++MLRDRGY ++ + T + F K G+ + ++L K N
Sbjct: 2 ESVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61
Query: 279 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
D +D + +FF + + + Y ++SE+V RAI+V
Sbjct: 62 DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIV 100
[103][TOP]
>UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative n=1 Tax=Entamoeba dispar SAW760
RepID=B0EA74_ENTDI
Length = 204
Score = 60.5 bits (145), Expect = 6e-08
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Frame = +3
Query: 108 EELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQF---IRKHGDNMKREDLVTLKAKRN 278
E + +YR KT+++MLRDRGY ++ + T + F K G+ + ++L K N
Sbjct: 2 ENVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61
Query: 279 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
D +D + +FF + + + Y ++SE+V RAI+V
Sbjct: 62 DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIV 100
[104][TOP]
>UniRef100_UPI0001B7AB22 UPI0001B7AB22 related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7AB22
Length = 79
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQ--MLRDRGYFIADSELTMTKQQFIRKHGDNM-----KREDLVTL 263
EEE RL++I+KT+MQ + DRGY + EL T ++F + GD +R DL L
Sbjct: 4 EEETYRLWKIRKTIMQATLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 63
Query: 264 KAKRNDNSDQLYIFFP 311
A +D +DQ+++FFP
Sbjct: 64 VAHNDDPTDQMFVFFP 79
[105][TOP]
>UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8ID59_PLAF7
Length = 205
Score = 59.7 bits (143), Expect = 1e-07
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDN-MKREDLVTLKAKRND 281
E+ + R Y+ +KT +ML DRGY + E F DN +R + +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKND 61
Query: 282 NSDQLYIFFPDEA-KVGVKTMKMYTNRMKSENVFRAILV 395
+++++ ++F DE K GVK ++ T RM+ +++ RAILV
Sbjct: 62 SNNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILV 100
[106][TOP]
>UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1
Tax=Babesia bovis RepID=A7APR4_BABBO
Length = 205
Score = 59.3 bits (142), Expect = 1e-07
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQF-IRKHGDNMKREDLVTLKAKRND 281
++E RL+R ++T +ML DRGYFI + E T +F R + R ++ + + + D
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPNQERLETFAEFKARYELYDRVRSKMLLVASLKTD 61
Query: 282 NSDQLYIFFPDEA-KVGVKTMKMYTNRMKSENVFRAILV 395
+L ++F DE K GVK ++ T +M+ ++ RAILV
Sbjct: 62 KDAKLLVYFADETKKTGVKPIRELTEKMEDHDIHRAILV 100
[107][TOP]
>UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1
Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE
Length = 221
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Frame = +3
Query: 111 ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHG--------------DNMKRE 248
EL RL+R+ +T+ +M+RDRGY +AD E+ ++ ++F +HG + R
Sbjct: 8 ELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSSSRS 67
Query: 249 DLVTLKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
++ NDN+D+++++F + V +MK + M R I++
Sbjct: 68 NMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIII 116
[108][TOP]
>UniRef100_A8QAC6 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
7966 RepID=A8QAC6_MALGO
Length = 159
Score = 59.3 bits (142), Expect = 1e-07
Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDN--MKREDLVTLKA 269
M + E RL+R+ +T+ +++ DRGY +++ EL + F + N + R +
Sbjct: 1 MNDDRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQ 60
Query: 270 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
++ ++L++F+ E VGVKTM+ + N ++ +N+ R I++
Sbjct: 61 HKDKPEERLFVFYSTERNVGVKTMRQFINILEEKNITRGIII 102
[109][TOP]
>UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5
Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST
Length = 215
Score = 59.3 bits (142), Expect = 1e-07
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
E + RL+R +T+ +M++DRGYFI E+ + + F K+ D+M R + + N
Sbjct: 6 ERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPT 65
Query: 285 SD---------QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+ L++ F DE VGVKTMK + ++ +N I V
Sbjct: 66 EESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFV 111
[110][TOP]
>UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA
Length = 215
Score = 59.3 bits (142), Expect = 1e-07
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 284
E + RL+R +T+ +M+RDRGYFI E+ ++ + F K+ D+M + + + N
Sbjct: 6 ERGISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPT 65
Query: 285 SD---------QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+ L++ F DEA VGVKTMK + + +N I +
Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFI 111
[111][TOP]
>UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Eremothecium gossypii RepID=RPAB1_ASHGO
Length = 215
Score = 59.3 bits (142), Expect = 1e-07
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLK------ 266
E + RL+R +T+ +M+RDRGYFI E+ ++ + F K+ D+M R +
Sbjct: 6 ERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPT 65
Query: 267 ---AKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
K++ N +++ F DE VG+KTMK + + +N I +
Sbjct: 66 EETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFI 111
[112][TOP]
>UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4
RepID=UPI00004E3EE0
Length = 181
Score = 58.9 bits (141), Expect = 2e-07
Identities = 32/84 (38%), Positives = 45/84 (53%)
Frame = +3
Query: 153 MLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSDQLYIFFPDEAKVGV 332
ML DR Y I E ++ F+ RE+L K++D +D +Y+FFPD KVGV
Sbjct: 1 MLSDREYIITAYEQEYPRESFV-------SRENLTMYCVKKDDPTDSIYVFFPDTPKVGV 53
Query: 333 KTMKMYTNRMKSENVFRAILVVHR 404
+K Y + MK RAI+VV +
Sbjct: 54 TQIKKYVDIMKDRQANRAIIVVQQ 77
[113][TOP]
>UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1
Tax=Theileria annulata RepID=Q4U8E3_THEAN
Length = 205
Score = 58.9 bits (141), Expect = 2e-07
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-REDLVTLKAKRND 281
++E RL+R ++T +ML DRGYFI E T +F ++ K R ++ + + R
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKMLLVASLRTA 61
Query: 282 NSDQLYIFFPDE-AKVGVKTMKMYTNRMKSENVFRAILV 395
++L ++F DE K GVK ++ T RM+ ++ RAILV
Sbjct: 62 AENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILV 100
[114][TOP]
>UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
albicans RepID=C4YG42_CANAL
Length = 214
Score = 58.5 bits (140), Expect = 2e-07
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Frame = +3
Query: 102 TEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM---KREDL------ 254
T+ + RL+R KT+ +M+RDRGY+I+ EL MT ++F K D+M +R+ +
Sbjct: 4 TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63
Query: 255 VTLKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
++ + L++ F DEA VG+KTM+ + + +N I +
Sbjct: 64 TAETLEKFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFI 110
[115][TOP]
>UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1
Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC
Length = 214
Score = 57.8 bits (138), Expect = 4e-07
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Frame = +3
Query: 102 TEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM---KREDLVTLKAK 272
T+ + RL+R KT+ +M+RDRGY+I+ EL MT ++F K D+M +R+ +
Sbjct: 4 TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63
Query: 273 RNDNSDQ------LYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+ ++ L++ F DE+ VG+KTM+ + + +N I +
Sbjct: 64 TGETLEKFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGIFI 110
[116][TOP]
>UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JZQ6_SCHJY
Length = 211
Score = 57.8 bits (138), Expect = 4e-07
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKH---GDNMKREDLVTLKAKR 275
E + +++R+ KT+ Q++ DRGY ++ SEL +T QF H G N+ R L + AK
Sbjct: 6 ERNIVKVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTL-SFYAKP 64
Query: 276 NDNSDQ--LYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
SD+ +Y+ F E VG+K M+ + + + N IL+
Sbjct: 65 PPGSDKGTIYVEFAKEPSVGIKEMRTFVHTLGDHNHKTGILI 106
[117][TOP]
>UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO
Length = 210
Score = 57.8 bits (138), Expect = 4e-07
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Frame = +3
Query: 105 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKH---GDNMKREDLVTLKAKR 275
E+ + R++R KT Q++ DRGY ++ +EL +T QF H G N+ R L
Sbjct: 5 EKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPS 64
Query: 276 ND-NSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
ND N +YI F E VG+K M+ + + + N IL+
Sbjct: 65 NDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILI 105
[118][TOP]
>UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST
Length = 213
Score = 57.4 bits (137), Expect = 5e-07
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 275
M + + RL+R KT+ +M+RDRGY+I E+ M+ +F K D+M R + +
Sbjct: 1 MEDDRTVSRLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKLMCFQA 60
Query: 276 NDNSD---------QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
N ++ L++ F DEA VG+KTM+ + + +N I +
Sbjct: 61 NPTAESLDKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFI 109
[119][TOP]
>UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE
Length = 176
Score = 57.0 bits (136), Expect = 6e-07
Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Frame = +3
Query: 84 LVKKMLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHG-----DNMKRE 248
+ ++ L + L RL+R++ TL Q+ +DRGY + +L +T++ F + G + +R
Sbjct: 1 MAEEALNQSLLYRLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRS 60
Query: 249 DLVTLKAKRNDNSDQLYIFFPDEAKVGVKTMK 344
DL + + +D +DQL ++F ++ KVG+ ++
Sbjct: 61 DLDFVVQRASDPTDQLGVYFANDPKVGIAVVR 92
[120][TOP]
>UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MBX4_CANTT
Length = 214
Score = 57.0 bits (136), Expect = 6e-07
Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Frame = +3
Query: 102 TEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNM---KREDLVTLKAK 272
T+ + RL+R KT+ +M+RDRGY+I+ E+ MT ++F K D+M +R+ +
Sbjct: 4 TDRSISRLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKICDSMGNPQRKQMCFQAQP 63
Query: 273 RNDNSDQ------LYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
+ ++ L++ F DE+ VG+KTM+ + + +N + +
Sbjct: 64 TGETLEKFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGLFI 110
[121][TOP]
>UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA
Length = 214
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Frame = +3
Query: 102 TEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGD--NMKREDLVTLKAKR 275
T+ + RL+R KT+ +M+RDRGY+I E+ M+ +F + D N+ + L+ +A
Sbjct: 4 TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANP 63
Query: 276 NDNS-------DQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILV 395
S L++ F DEA VG+KTM+ + + +N I +
Sbjct: 64 TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFI 110
[122][TOP]
>UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative
(Fragment) n=1 Tax=Perkinsus marinus ATCC 50983
RepID=C5LN15_9ALVE
Length = 168
Score = 54.3 bits (129), Expect = 4e-06
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Frame = +3
Query: 192 LTMTKQQFIRKHGDNMKRE----DLVTLKAKRNDNSDQLYIFFPDEAK-VGVKTMKMYTN 356
L TK+ F ++ + +R+ DL+ L +K++D SDQL +FFPDE K VGVK ++
Sbjct: 2 LNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLAL 61
Query: 357 RMKSENVFRAILVVHR 404
+M+ + + RAILVV +
Sbjct: 62 KMEEQRLSRAILVVQQ 77
[123][TOP]
>UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia
theta RepID=Q98RN7_GUITH
Length = 214
Score = 53.9 bits (128), Expect = 5e-06
Identities = 27/110 (24%), Positives = 68/110 (61%), Gaps = 8/110 (7%)
Frame = +3
Query: 96 MLTEEELKRLYRIQKTLMQMLRDRGYFIADS--ELTMTKQQFIRKHGDN--MKREDLVTL 263
M ++ ++ L+++++T++QM+RDRGY + DS +L +++ F + N + R+ L
Sbjct: 1 MNDDKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIK 60
Query: 264 KAKRNDNSDQLYIFF----PDEAKVGVKTMKMYTNRMKSENVFRAILVVH 401
+ + ++ +++ I F D+ +GVK+++++ R+K+E R +++++
Sbjct: 61 RPRWDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILN 110