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[1][TOP]
>UniRef100_O24629 AT1G64860 protein n=2 Tax=Arabidopsis thaliana RepID=O24629_ARATH
Length = 502
Score = 396 bits (1017), Expect = e-109
Identities = 199/199 (100%), Positives = 199/199 (100%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG
Sbjct: 249 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 308
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE
Sbjct: 309 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 368
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL
Sbjct: 369 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 428
Query: 542 KEEVSKLISATLGEREKEI 598
KEEVSKLISATLGEREKEI
Sbjct: 429 KEEVSKLISATLGEREKEI 447
[2][TOP]
>UniRef100_O22576 RNA polymerase sigma subunit 1 n=1 Tax=Arabidopsis thaliana
RepID=O22576_ARATH
Length = 502
Score = 396 bits (1017), Expect = e-109
Identities = 199/199 (100%), Positives = 199/199 (100%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG
Sbjct: 249 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 308
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE
Sbjct: 309 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 368
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL
Sbjct: 369 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 428
Query: 542 KEEVSKLISATLGEREKEI 598
KEEVSKLISATLGEREKEI
Sbjct: 429 KEEVSKLISATLGEREKEI 447
[3][TOP]
>UniRef100_O22057 Plastid RNA polymerase sigma-subunit n=1 Tax=Arabidopsis thaliana
RepID=O22057_ARATH
Length = 502
Score = 396 bits (1017), Expect = e-109
Identities = 199/199 (100%), Positives = 199/199 (100%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG
Sbjct: 249 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 308
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE
Sbjct: 309 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 368
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL
Sbjct: 369 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 428
Query: 542 KEEVSKLISATLGEREKEI 598
KEEVSKLISATLGEREKEI
Sbjct: 429 KEEVSKLISATLGEREKEI 447
[4][TOP]
>UniRef100_Q9FPH1 At1g64860 n=1 Tax=Arabidopsis thaliana RepID=Q9FPH1_ARATH
Length = 502
Score = 394 bits (1012), Expect = e-108
Identities = 198/199 (99%), Positives = 199/199 (100%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQAWLMECHLAREKLAMSNVRLVMSIAQRY+NLGAEMSDLVQGGLIGLLRGIEKFDSSKG
Sbjct: 249 LQAWLMECHLAREKLAMSNVRLVMSIAQRYNNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 308
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE
Sbjct: 309 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 368
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL
Sbjct: 369 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 428
Query: 542 KEEVSKLISATLGEREKEI 598
KEEVSKLISATLGEREKEI
Sbjct: 429 KEEVSKLISATLGEREKEI 447
[5][TOP]
>UniRef100_O49935 Sig1 protein n=1 Tax=Sinapis alba RepID=O49935_SINAL
Length = 481
Score = 386 bits (991), Expect = e-106
Identities = 192/199 (96%), Positives = 196/199 (98%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQAWLMECHLAREKLAMSNVRLVMSIAQRYDN+GAEMSDLVQGGLIGLLRGIEKFDSSKG
Sbjct: 228 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLIGLLRGIEKFDSSKG 287
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE
Sbjct: 288 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 347
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLNMSQKKVRNATEAVSK+FSLDRDAFPSLNGLPGETHHSYIAD RLENNPWHGYD LAL
Sbjct: 348 SLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHSYIADNRLENNPWHGYDALAL 407
Query: 542 KEEVSKLISATLGEREKEI 598
K+EVSKLIS TLGERE+EI
Sbjct: 408 KDEVSKLISVTLGEREREI 426
[6][TOP]
>UniRef100_B9IPY1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPY1_POPTR
Length = 509
Score = 353 bits (906), Expect = 6e-96
Identities = 174/199 (87%), Positives = 190/199 (95%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ+ L++C LAREKLAMSNVRLVMSIAQ+YDN+GAEM+DLVQGGLIGLLRGIEKFDSSKG
Sbjct: 256 LQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 315
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
F+ISTYVYWWIRQGVSRALVDNSRTLRLP HLHERLGLIRNAK+RL+EKG+TPSIDRIAE
Sbjct: 316 FKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAE 375
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLNMSQ+KVRNATEA+SKVFSLDR+AFPSLNGLPGETHHSYIAD R ENNPWHG D+ AL
Sbjct: 376 SLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNPWHGVDEWAL 435
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+KLI +TL EREKEI
Sbjct: 436 KEEVNKLIDSTLQEREKEI 454
[7][TOP]
>UniRef100_UPI0001984E9A PREDICTED: hypothetical protein isoform 2 n=1 Tax=Vitis vinifera
RepID=UPI0001984E9A
Length = 496
Score = 350 bits (897), Expect = 6e-95
Identities = 173/199 (86%), Positives = 190/199 (95%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ+ L+EC LAREKLAMSNVRLVMSIAQRYDN+GAEM+DLVQGGLIGLLRGIEKFDSSKG
Sbjct: 243 LQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 302
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
F+ISTYVYWWIRQGVSRALV+NSRTLRLP+HLHERL LIRNAK+RL+EKGITPSIDRIAE
Sbjct: 303 FKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAE 362
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
LNMSQKKVRNATEA+SKVFSLDR+AFPSLNGLPGET HSYIAD RLENNPWHG D+ AL
Sbjct: 363 CLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWAL 422
Query: 542 KEEVSKLISATLGEREKEI 598
K+EV+KLI+ TLGERE++I
Sbjct: 423 KDEVNKLINTTLGERERDI 441
[8][TOP]
>UniRef100_UPI0001984E99 PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vinifera
RepID=UPI0001984E99
Length = 507
Score = 350 bits (897), Expect = 6e-95
Identities = 173/199 (86%), Positives = 190/199 (95%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ+ L+EC LAREKLAMSNVRLVMSIAQRYDN+GAEM+DLVQGGLIGLLRGIEKFDSSKG
Sbjct: 254 LQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 313
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
F+ISTYVYWWIRQGVSRALV+NSRTLRLP+HLHERL LIRNAK+RL+EKGITPSIDRIAE
Sbjct: 314 FKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAE 373
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
LNMSQKKVRNATEA+SKVFSLDR+AFPSLNGLPGET HSYIAD RLENNPWHG D+ AL
Sbjct: 374 CLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWAL 433
Query: 542 KEEVSKLISATLGEREKEI 598
K+EV+KLI+ TLGERE++I
Sbjct: 434 KDEVNKLINTTLGERERDI 452
[9][TOP]
>UniRef100_A7PAZ2 Chromosome chr16 scaffold_10, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PAZ2_VITVI
Length = 486
Score = 350 bits (897), Expect = 6e-95
Identities = 173/199 (86%), Positives = 190/199 (95%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ+ L+EC LAREKLAMSNVRLVMSIAQRYDN+GAEM+DLVQGGLIGLLRGIEKFDSSKG
Sbjct: 233 LQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 292
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
F+ISTYVYWWIRQGVSRALV+NSRTLRLP+HLHERL LIRNAK+RL+EKGITPSIDRIAE
Sbjct: 293 FKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAE 352
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
LNMSQKKVRNATEA+SKVFSLDR+AFPSLNGLPGET HSYIAD RLENNPWHG D+ AL
Sbjct: 353 CLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWAL 412
Query: 542 KEEVSKLISATLGEREKEI 598
K+EV+KLI+ TLGERE++I
Sbjct: 413 KDEVNKLINTTLGERERDI 431
[10][TOP]
>UniRef100_B9SDF8 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9SDF8_RICCO
Length = 508
Score = 348 bits (894), Expect = 1e-94
Identities = 174/199 (87%), Positives = 188/199 (94%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ+ + C LAREKLAMSNVRLVMSIAQRYDN+GAEM+DLVQGGLIGLLRGIEKFDSSKG
Sbjct: 255 LQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 314
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRALV+NSRTLRLP HLHERLGLIRNAK+RL+EKG+TPSIDRIAE
Sbjct: 315 FRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAE 374
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+SQKKVRNATEAVSKVFSLDR+AFPSLNGLPGETHHSYIAD LENNPWHG DD AL
Sbjct: 375 SLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGVDDWAL 434
Query: 542 KEEVSKLISATLGEREKEI 598
K+EV+KLI+ TL ERE+EI
Sbjct: 435 KDEVNKLINLTLQEREQEI 453
[11][TOP]
>UniRef100_B9I6T5 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6T5_POPTR
Length = 499
Score = 344 bits (882), Expect = 4e-93
Identities = 169/199 (84%), Positives = 187/199 (93%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ+ L++C LAREKLAMSNVRLVMSIAQ+ DN+GAEM+DLVQ GLIGLLRGIEKFDSSKG
Sbjct: 246 LQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMGAEMADLVQAGLIGLLRGIEKFDSSKG 305
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
F+ISTYVYWWIRQGVSRALV+N RTLRLP HLHERLGLIRNAK+RL+EKG+TPSIDRIAE
Sbjct: 306 FKISTYVYWWIRQGVSRALVENPRTLRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAE 365
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLNMSQ+KVRNATEA+SKVFSLDR+AFPSLNGLPGETHHSYIAD RLENNPWHG D+ AL
Sbjct: 366 SLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGVDEWAL 425
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+KLI + L ERE+EI
Sbjct: 426 KEEVNKLIDSALQEREREI 444
[12][TOP]
>UniRef100_Q9SLX4 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX4_TOBAC
Length = 508
Score = 327 bits (839), Expect = 3e-88
Identities = 163/199 (81%), Positives = 183/199 (91%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ+ L+EC LARE+LAMSNVRLVMSIAQRYDN+GAEM+DLVQGGLIGLLRGIEKFD SKG
Sbjct: 255 LQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIGLLRGIEKFDPSKG 314
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
++ISTYVYWWIRQGVSRALV+NSRTLRLPT+LHERL LIRNAK RL+EKGITPS++ IA
Sbjct: 315 YKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARLEEKGITPSVNNIAA 374
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLNMSQKKVRNATEA SK++SLDR+AFPSLNGLPGET HSYIAD LENNPWHG D AL
Sbjct: 375 SLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNHLENNPWHGVDVWAL 434
Query: 542 KEEVSKLISATLGEREKEI 598
K+EV+ LIS+TL +RE+EI
Sbjct: 435 KDEVNNLISSTLRDREREI 453
[13][TOP]
>UniRef100_Q9SLX3 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX3_TOBAC
Length = 502
Score = 323 bits (827), Expect = 8e-87
Identities = 161/199 (80%), Positives = 180/199 (90%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L++ L+EC LAREKLAMSNVRLVMSIAQRYD G EM+DL+QGGLIGLLRGIEKFD S+G
Sbjct: 249 LRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLLRGIEKFDHSRG 308
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
F+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL LIRNAK++L+E GITPSI++IAE
Sbjct: 309 FKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKENGITPSIEKIAE 368
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
LNMSQKKVRNATEA SKVFSLDR+AFPSLNGLPGET HSYIAD RLEN PWHG D+ L
Sbjct: 369 CLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLENIPWHGVDEWML 428
Query: 542 KEEVSKLISATLGEREKEI 598
K+EV+ LIS+TL ERE+EI
Sbjct: 429 KDEVNNLISSTLREREREI 447
[14][TOP]
>UniRef100_Q9ZTI3 RNA polymerase sigma factor 1 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI3_MAIZE
Length = 398
Score = 286 bits (732), Expect = 9e-76
Identities = 139/199 (69%), Positives = 169/199 (84%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+A + E LARE LAMSN RLV+SIAQ+YDNLG E+ DL+QGGLIGLLRGIEKFD+S+G
Sbjct: 145 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLLRGIEKFDASRG 204
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL DNSR+ RLPT+LHERL IR AK L+++GI P+++ IAE
Sbjct: 205 FRISTYVYWWIRQGVSRALADNSRSFRLPTYLHERLVAIRGAKYALEDQGIAPTVENIAE 264
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+S+KKV NATEAV KV SLD+ AFPSLNGLPG+T HSYI D + N+PWHG+++ L
Sbjct: 265 SLNISEKKVHNATEAVHKVISLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYL 324
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+ LI++TL ERE++I
Sbjct: 325 KEEVNSLINSTLNERERDI 343
[15][TOP]
>UniRef100_B4FP19 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FP19_MAIZE
Length = 496
Score = 286 bits (732), Expect = 9e-76
Identities = 139/199 (69%), Positives = 169/199 (84%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+A + E LARE LAMSN RLV+SIAQ+YDNLG E+ DL+QGGLIGLLRGIEKFD+S+G
Sbjct: 243 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLLRGIEKFDASRG 302
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL DNSR+ RLPT+LHERL IR AK L+++GI P+++ IAE
Sbjct: 303 FRISTYVYWWIRQGVSRALADNSRSFRLPTYLHERLVAIRGAKYALEDQGIAPTVENIAE 362
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+S+KKV NATEAV KV SLD+ AFPSLNGLPG+T HSYI D + N+PWHG+++ L
Sbjct: 363 SLNISEKKVHNATEAVHKVISLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYL 422
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+ LI++TL ERE++I
Sbjct: 423 KEEVNSLINSTLNERERDI 441
[16][TOP]
>UniRef100_C5YHG2 Putative uncharacterized protein Sb07g004340 n=1 Tax=Sorghum
bicolor RepID=C5YHG2_SORBI
Length = 500
Score = 285 bits (730), Expect = 1e-75
Identities = 137/199 (68%), Positives = 170/199 (85%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+A + E LARE L MSN+RLV+SIAQ+YDNLG E++DL+QGGLIGLLRGIEKFD+S+G
Sbjct: 247 LRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 306
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL DNS+ RLPT+LHERL IR AK L+++GI P+++ IAE
Sbjct: 307 FRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERLIAIRGAKYALEDQGIAPTVENIAE 366
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+S+KKV NATEAV+KV SLD+ AFPSLNGLPG+T HSYI D + N+PWHG+++ L
Sbjct: 367 SLNISEKKVHNATEAVNKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYL 426
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+ LI++TL ERE++I
Sbjct: 427 KEEVNNLINSTLNERERDI 445
[17][TOP]
>UniRef100_O24348 Plastid RNA polymerase sigma factor n=1 Tax=Sorghum bicolor
RepID=O24348_SORBI
Length = 500
Score = 283 bits (725), Expect = 6e-75
Identities = 136/199 (68%), Positives = 169/199 (84%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+A + E LARE L MSN+RLV+SIAQ+YDNLG E++DL+QGGLIGLLRGIEKFD+S+G
Sbjct: 247 LRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 306
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL DNS+ RLPT+LHERL IR AK L+++GI P+++ IAE
Sbjct: 307 FRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERLIAIRGAKYALEDQGIAPTVENIAE 366
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+S+KKV NATEAV+KV SLD+ AFPSLNGLPG+T HSYI D + N+PWHG+++ L
Sbjct: 367 SLNISEKKVHNATEAVNKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYL 426
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+ LI++ L ERE++I
Sbjct: 427 KEEVNNLINSNLNERERDI 445
[18][TOP]
>UniRef100_Q7EY08 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
Japonica Group RepID=Q7EY08_ORYSJ
Length = 388
Score = 283 bits (724), Expect = 7e-75
Identities = 137/199 (68%), Positives = 171/199 (85%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L++ + E LARE L MSN+RLV+SIAQ+YDNLG E++DL+QGGLIGLLRGIEKFD+S+G
Sbjct: 135 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 194
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL +NS+T RLPT+LHERL IR AK L+++GI P+I+ IA
Sbjct: 195 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAG 254
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+S+KKV NATEAV+KV SLD+ AFPSLNGLPGET HSYI D + N+PWHG+++ L
Sbjct: 255 SLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYL 314
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+KL+++TL ERE++I
Sbjct: 315 KEEVNKLLNSTLNERERDI 333
[19][TOP]
>UniRef100_Q0J7T6 Os08g0163400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q0J7T6_ORYSJ
Length = 520
Score = 283 bits (724), Expect = 7e-75
Identities = 137/199 (68%), Positives = 171/199 (85%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L++ + E LARE L MSN+RLV+SIAQ+YDNLG E++DL+QGGLIGLLRGIEKFD+S+G
Sbjct: 267 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 326
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL +NS+T RLPT+LHERL IR AK L+++GI P+I+ IA
Sbjct: 327 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAG 386
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+S+KKV NATEAV+KV SLD+ AFPSLNGLPGET HSYI D + N+PWHG+++ L
Sbjct: 387 SLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYL 446
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+KL+++TL ERE++I
Sbjct: 447 KEEVNKLLNSTLNERERDI 465
[20][TOP]
>UniRef100_O48655 Plastid RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
Group RepID=O48655_ORYSJ
Length = 519
Score = 283 bits (724), Expect = 7e-75
Identities = 137/199 (68%), Positives = 171/199 (85%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L++ + E LARE L MSN+RLV+SIAQ+YDNLG E++DL+QGGLIGLLRGIEKFD+S+G
Sbjct: 266 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 325
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL +NS+T RLPT+LHERL IR AK L+++GI P+I+ IA
Sbjct: 326 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAG 385
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+S+KKV NATEAV+KV SLD+ AFPSLNGLPGET HSYI D + N+PWHG+++ L
Sbjct: 386 SLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYL 445
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+KL+++TL ERE++I
Sbjct: 446 KEEVNKLLNSTLNERERDI 464
[21][TOP]
>UniRef100_A3BPX7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BPX7_ORYSJ
Length = 420
Score = 283 bits (724), Expect = 7e-75
Identities = 137/199 (68%), Positives = 171/199 (85%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L++ + E LARE L MSN+RLV+SIAQ+YDNLG E++DL+QGGLIGLLRGIEKFD+S+G
Sbjct: 167 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 226
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL +NS+T RLPT+LHERL IR AK L+++GI P+I+ IA
Sbjct: 227 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAG 286
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+S+KKV NATEAV+KV SLD+ AFPSLNGLPGET HSYI D + N+PWHG+++ L
Sbjct: 287 SLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYL 346
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+KL+++TL ERE++I
Sbjct: 347 KEEVNKLLNSTLNERERDI 365
[22][TOP]
>UniRef100_Q7EY07 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
RepID=Q7EY07_ORYSJ
Length = 342
Score = 283 bits (724), Expect = 7e-75
Identities = 137/199 (68%), Positives = 171/199 (85%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L++ + E LARE L MSN+RLV+SIAQ+YDNLG E++DL+QGGLIGLLRGIEKFD+S+G
Sbjct: 89 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 148
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL +NS+T RLPT+LHERL IR AK L+++GI P+I+ IA
Sbjct: 149 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAG 208
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+S+KKV NATEAV+KV SLD+ AFPSLNGLPGET HSYI D + N+PWHG+++ L
Sbjct: 209 SLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYL 268
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+KL+++TL ERE++I
Sbjct: 269 KEEVNKLLNSTLNERERDI 287
[23][TOP]
>UniRef100_Q9ZTI2 RNA polymerase sigma factor 2 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI2_MAIZE
Length = 349
Score = 282 bits (721), Expect = 2e-74
Identities = 136/199 (68%), Positives = 168/199 (84%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+A + E LARE L MSN+RLV+SIA +YDNLG +++DL+QGGLIGLLRGIEKFD+S+G
Sbjct: 96 LRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLLRGIEKFDASRG 155
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL DNS+T RLPT+LHERL IR AK L+++GI P+I+ IAE
Sbjct: 156 FRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLLAIRGAKYALEDQGIAPTIENIAE 215
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
SLN+S KKV NATEAV KV SLD+ AFPSLNGLPG+T HSYI D + N+PWHG++++ L
Sbjct: 216 SLNISVKKVHNATEAVHKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEEMYL 275
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+ LI++ L ERE++I
Sbjct: 276 KEEVNNLINSNLNERERDI 294
[24][TOP]
>UniRef100_Q9ZP70 Chloroplast sigma factor (Fragment) n=1 Tax=Triticum aestivum
RepID=Q9ZP70_WHEAT
Length = 461
Score = 275 bits (704), Expect = 2e-72
Identities = 132/199 (66%), Positives = 167/199 (83%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L++ + E LARE L MSN+RLV+SIAQ+YD LG E+SDL+QGGLIGLLRGIEKFD+S+G
Sbjct: 208 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASRG 267
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAE 361
FRISTYVYWWIRQGVSRAL DNS+T RLPT+LHERL IR AK L+++G++P+ IA+
Sbjct: 268 FRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLIAIRGAKYALEDQGVSPTTQNIAK 327
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 541
LN+S+KKV NATEAV+K SLD+ AFPSLNGLPG+T HSYI D + N+PWHG+++ L
Sbjct: 328 LLNISEKKVHNATEAVNKALSLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEEWYL 387
Query: 542 KEEVSKLISATLGEREKEI 598
KEEV+KL+++ L ERE++I
Sbjct: 388 KEEVNKLLNSNLTERERDI 406
[25][TOP]
>UniRef100_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens
RepID=A9SW01_PHYPA
Length = 677
Score = 198 bits (504), Expect = 2e-49
Identities = 93/196 (47%), Positives = 142/196 (72%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
L E AR+K+ M+N+RLV+S+A++Y + G EM+DL+Q G IGLLRG+EKFD ++G+++S
Sbjct: 423 LGEAEWARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHTRGYKLS 482
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNM 373
TYV+WWIRQGV+RA+ D+SRT+RLP H+H+ LG IR AK L +G T S+ I+E+ N+
Sbjct: 483 TYVHWWIRQGVTRAIADHSRTVRLPVHVHDTLGRIRKAKSTLLSEGCTASVQEISEATNL 542
Query: 374 SQKKVRNATEAVSKVFSLDRD-AFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
+ K++N + K+ SLD++ +L GET HS +AD +EN PW + + +K++
Sbjct: 543 TGTKIKNTLQVTKKLVSLDKEIGRNTLQSGDGETLHSLVADRDIENQPWTIVERMLMKDD 602
Query: 551 VSKLISATLGEREKEI 598
V KL+++ LG RE++I
Sbjct: 603 VDKLLTSQLGPRERDI 618
[26][TOP]
>UniRef100_B4AVI8 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AVI8_9CHRO
Length = 389
Score = 138 bits (347), Expect = 4e-31
Identities = 75/190 (39%), Positives = 120/190 (63%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+S+A+RY N G E+ DL+Q G +GL R ++KFD +KG+R STY YWW
Sbjct: 150 AKEQMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFSTYAYWW 209
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SR +RLP H+ E+L I+ A+ ++ Q KG TPSI+ +++ L MS ++
Sbjct: 210 IRQGITRAIATQSRIIRLPVHITEKLNKIKKAQRKIAQLKGATPSIEELSQELEMSPPQI 269
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R V + SL+ G +T + +T E +P + AL++++ L+
Sbjct: 270 REVLMRVPRSVSLEIKV-----GKEKDTELIDLLET-TEASPEDNIANEALRQDLHNLL- 322
Query: 569 ATLGEREKEI 598
A L RE+E+
Sbjct: 323 ADLTTREREV 332
[27][TOP]
>UniRef100_B8HRG7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HRG7_CYAP4
Length = 455
Score = 137 bits (346), Expect = 5e-31
Identities = 78/190 (41%), Positives = 118/190 (62%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DL+Q G +GL R +EKFD +KG+R STY YWW
Sbjct: 216 AKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 275
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ QEKG TPSI+ IA L M+ +V
Sbjct: 276 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDIATELEMTVPQV 335
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R V + SL+ G +T + +T + +P +L E+ KL+
Sbjct: 336 RELLVRVPRSVSLETKV-----GKDKDTELGDLLETD-DLSPEEMMMRESLHRELEKLL- 388
Query: 569 ATLGEREKEI 598
A L RE+++
Sbjct: 389 ADLTSRERDV 398
[28][TOP]
>UniRef100_B1XMU3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=B1XMU3_SYNP2
Length = 398
Score = 137 bits (345), Expect = 7e-31
Identities = 62/134 (46%), Positives = 98/134 (73%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DL+Q G +GL R ++KFD +KG+R STY YWW
Sbjct: 159 AKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFSTYAYWW 218
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ Q +G TPS+D +A++L M+ ++V
Sbjct: 219 IRQGITRAIATQSRTIRLPVHVTEKLNKIKKAQRQISQTQGCTPSLDDVAQALEMTPEQV 278
Query: 389 RNATEAVSKVFSLD 430
R + V + SL+
Sbjct: 279 REVLQKVPRSVSLE 292
[29][TOP]
>UniRef100_Q2JIA4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIA4_SYNJB
Length = 366
Score = 137 bits (344), Expect = 8e-31
Identities = 66/134 (49%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DL+Q G +GL R +EKFD KG+R STY YWW
Sbjct: 127 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRFSTYAYWW 186
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ +L QEKG TP+I+ IA L M+ +V
Sbjct: 187 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASELEMTPPQV 246
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 247 RELLVRVPRSVSLE 260
[30][TOP]
>UniRef100_Q2JT33 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JT33_SYNJA
Length = 364
Score = 136 bits (343), Expect = 1e-30
Identities = 66/134 (49%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DL+Q G +GL R +EKFD KG+R STY YWW
Sbjct: 125 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRFSTYAYWW 184
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ +L QEKG TP+I+ IA L M+ +V
Sbjct: 185 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASELEMTVPQV 244
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 245 RELLVRVPRSVSLE 258
[31][TOP]
>UniRef100_Q59996 Probable RNA polymerase sigma-C factor n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPSC_SYNY3
Length = 404
Score = 136 bits (342), Expect = 1e-30
Identities = 64/134 (47%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ + +N+RLV+S+A++Y N G E+ DL+Q G +GL R +EKFD +KG+R STY YWW
Sbjct: 165 AKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWW 224
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SR +RLP H+ E+L I+ A+ ++ QEKG TP ID +AE L M+ ++V
Sbjct: 225 IRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQV 284
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 285 REVLTQVPRSVSLE 298
[32][TOP]
>UniRef100_B2IV51 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IV51_NOSP7
Length = 416
Score = 135 bits (340), Expect = 2e-30
Identities = 64/134 (47%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DLVQ G +GL R +EKFD +KG+R STY YWW
Sbjct: 177 AKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 236
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ +SRT+RLP H+ E+L I+ A+ ++ QEKG TP+++ +A L M+ +V
Sbjct: 237 IRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLATELEMTPTQV 296
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 297 REVLLRVPRSVSLE 310
[33][TOP]
>UniRef100_B2JB50 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2JB50_NOSP7
Length = 316
Score = 135 bits (339), Expect = 3e-30
Identities = 64/145 (44%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ+ + + A++K+ +N+RLV+S+A++Y N + DL+Q G +GL RGIEKFD +KG
Sbjct: 71 LQSVIQQGQKAKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQEGALGLQRGIEKFDPNKG 130
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
+++STYVYWWI Q ++RA+ D SRT+RLP H++E+L IR + +L Q G P + IA
Sbjct: 131 YKLSTYVYWWITQSITRAVADKSRTIRLPIHINEKLNKIRRVQQQLSQSLGRPPVVAEIA 190
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDR 433
ESLN+S ++R + + SL++
Sbjct: 191 ESLNLSPNQIREYLQISKPLVSLEK 215
[34][TOP]
>UniRef100_B9YR14 RNA polymerase sigma factor n=1 Tax='Nostoc azollae' 0708
RepID=B9YR14_ANAAZ
Length = 417
Score = 135 bits (339), Expect = 3e-30
Identities = 64/134 (47%), Positives = 97/134 (72%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DLVQ G +GL R +EKFD +KG+R STY YWW
Sbjct: 178 AKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 237
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ +SRT+RLP H+ E+L I+ A+ ++ QEKG TP+++ +A L+M+ +V
Sbjct: 238 IRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTLEDLAIELDMTPTQV 297
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 298 REVLLRVPRSVSLE 311
[35][TOP]
>UniRef100_B0BYV8 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0BYV8_ACAM1
Length = 423
Score = 134 bits (338), Expect = 4e-30
Identities = 63/134 (47%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DL+Q G +GL R +EKFD +KG+R STY YWW
Sbjct: 184 AKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 243
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ +L Q KG T SI+ IA+ ++M+ +++
Sbjct: 244 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQSKGRTASIEDIAQEMDMTPEQI 303
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 304 RELLVRVPRSVSLE 317
[36][TOP]
>UniRef100_A0ZIW0 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZIW0_NODSP
Length = 442
Score = 134 bits (338), Expect = 4e-30
Identities = 64/134 (47%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DLVQ G +GL R +EKFD +KG+R STY YWW
Sbjct: 203 AKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 262
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ +SRT+RLP H+ E+L I+ A+ ++ QEKG TP+++ +A L M+ +V
Sbjct: 263 IRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPTQV 322
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 323 REVLLKVPRSVSLE 336
[37][TOP]
>UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium
caldarium RepID=Q39515_CYACA
Length = 591
Score = 134 bits (338), Expect = 4e-30
Identities = 80/194 (41%), Positives = 117/194 (60%), Gaps = 5/194 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+SIA+RY N G + DL+Q G IGL+RG+EKFD+ +GFR STY WW
Sbjct: 352 AKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWW 411
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D+SR++RLP H+H+ + LIR LQ E G PS + I ES+ + + K
Sbjct: 412 IRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICESVGIDRAKY 471
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETH---HSYIA-DTRLENNPWHGYDDLALKEEVS 556
R E + SL+ P +G + H S IA + R E N L+E +
Sbjct: 472 RLVMECSRNIVSLET---PLRSG--DDVHFLGESLIAPEERAEENCSRD----TLRESIE 522
Query: 557 KLISATLGEREKEI 598
K++ L RE+E+
Sbjct: 523 KVLHC-LSTREREV 535
[38][TOP]
>UniRef100_Q3MDZ8 RNA polymerase sigma factor n=1 Tax=Anabaena variabilis ATCC 29413
RepID=Q3MDZ8_ANAVT
Length = 416
Score = 134 bits (336), Expect = 7e-30
Identities = 63/134 (47%), Positives = 97/134 (72%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
++E + +N+RLV+S+A++Y N G E+ DLVQ G +GL R +EKFD +KG+R STY YWW
Sbjct: 177 SKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 236
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ +SRT+RLP H+ E+L I+ A+ ++ QEKG TP+++ +A L+M+ +V
Sbjct: 237 IRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQV 296
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 297 REVLLRVPRSVSLE 310
[39][TOP]
>UniRef100_B4W1N4 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W1N4_9CYAN
Length = 416
Score = 134 bits (336), Expect = 7e-30
Identities = 75/190 (39%), Positives = 118/190 (62%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DL+Q G +GL R +EKFD +KG+R STY YWW
Sbjct: 177 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 236
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ QE+G T +I+ IA+ L M +V
Sbjct: 237 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEQGRTATIEDIAKELEMDAPQV 296
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R V + SL+ G +T + +T E +P AL+ ++ +L+
Sbjct: 297 REVLMRVPRSVSLEIKV-----GKEKDTELGDLLETE-ETSPEDVLMREALQRDLQQLL- 349
Query: 569 ATLGEREKEI 598
A L RE+++
Sbjct: 350 ADLTSRERDV 359
[40][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 134 bits (336), Expect = 7e-30
Identities = 73/201 (36%), Positives = 122/201 (60%), Gaps = 3/201 (1%)
Frame = +2
Query: 5 QAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGF 184
+A L A+E++ +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS KGF
Sbjct: 196 RAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGF 255
Query: 185 RISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAE 361
+ STY WW++Q V+RA+ D+SRT+RLP HL++ + IR L E G +P+ + IAE
Sbjct: 256 KFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAE 315
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIAD--TRLENNPWHGYDDL 535
++MS +K+R+ ++ SL+R L + S ++D + +P +
Sbjct: 316 KMDMSVEKLRSVLQSAQPTLSLERP-------LKNDDDASQLSDFIEADQESPEEHVEKS 368
Query: 536 ALKEEVSKLISATLGEREKEI 598
L++++ +I+ +L RE+++
Sbjct: 369 MLRDDLENVIN-SLSPRERDV 388
[41][TOP]
>UniRef100_Q03066 RNA polymerase sigma-C factor n=1 Tax=Nostoc sp. PCC 7120
RepID=RPSC_ANASP
Length = 416
Score = 134 bits (336), Expect = 7e-30
Identities = 63/134 (47%), Positives = 97/134 (72%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
++E + +N+RLV+S+A++Y N G E+ DLVQ G +GL R +EKFD +KG+R STY YWW
Sbjct: 177 SKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 236
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ +SRT+RLP H+ E+L I+ A+ ++ QEKG TP+++ +A L+M+ +V
Sbjct: 237 IRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQV 296
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 297 REVLLRVPRSVSLE 310
[42][TOP]
>UniRef100_Q7NEW6 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NEW6_GLOVI
Length = 362
Score = 133 bits (335), Expect = 9e-30
Identities = 65/134 (48%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++K+ +N+RLV+S+A++Y N G E+ DLVQ G +GL R +EKFD +KG+R STY YWW
Sbjct: 123 AKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 182
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ + +L Q G TP+I IAE L M V
Sbjct: 183 IRQGITRAIATQSRTIRLPVHITEKLNRIKKTQRKLSQNLGRTPTISEIAEELEMEPAHV 242
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 243 RELMSRVPRSVSLE 256
[43][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 133 bits (335), Expect = 9e-30
Identities = 71/192 (36%), Positives = 119/192 (61%), Gaps = 3/192 (1%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS KGF+ STY WW
Sbjct: 188 AKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWW 247
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQKKV 388
++Q V+RA+ D+SRT+RLP HL++ + IR L E G +P+ + IA+ ++MS +K+
Sbjct: 248 VKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDMSVEKL 307
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIAD--TRLENNPWHGYDDLALKEEVSKL 562
RN ++ SL+R L + S ++D + +P + L++++ +
Sbjct: 308 RNVLQSAQPTLSLERP-------LKNDDDTSQLSDFIEADQESPEEHVEKSMLRDDLENV 360
Query: 563 ISATLGEREKEI 598
I+ +L RE+++
Sbjct: 361 IN-SLSPRERDV 371
[44][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 133 bits (334), Expect = 1e-29
Identities = 71/192 (36%), Positives = 119/192 (61%), Gaps = 3/192 (1%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+SIA+RY N G + DL+Q G +GL+R EKFDS KGF+ STY WW
Sbjct: 205 AKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWW 264
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQKKV 388
++Q V+RA+ D+SRT+RLP HL++ + IR L E G +P+ + IAE ++MS +K+
Sbjct: 265 VKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKL 324
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIAD--TRLENNPWHGYDDLALKEEVSKL 562
R+ ++ SL+R L + S ++D + +P + L++++ +
Sbjct: 325 RSVLQSAQPTLSLERP-------LKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENV 377
Query: 563 ISATLGEREKEI 598
I+ +L RE+++
Sbjct: 378 IN-SLSPRERDV 388
[45][TOP]
>UniRef100_B0JTP4 Group 2 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JTP4_MICAN
Length = 318
Score = 132 bits (333), Expect = 2e-29
Identities = 74/190 (38%), Positives = 120/190 (63%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YWW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + SRT+RLP H+ E+L I+ A+ +L Q+KG +I +AE L+++ K+V
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTPKQV 202
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R+ E + SLD + + GE + DT L + Y +L+ ++ KL+
Sbjct: 203 RDYLERSRQPLSLDLKVGDNQDTELGE----LLEDTGLSPEDYTAYS--SLQVDLEKLM- 255
Query: 569 ATLGEREKEI 598
A L ++KE+
Sbjct: 256 ADLTPQQKEV 265
[46][TOP]
>UniRef100_Q31M40 RNA polymerase sigma factor n=2 Tax=Synechococcus elongatus
RepID=Q31M40_SYNE7
Length = 398
Score = 132 bits (332), Expect = 2e-29
Identities = 63/134 (47%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++ + +N+RLV+S+A++Y N G E+ DLVQ G +GL R +EKFD +KG+R STY YWW
Sbjct: 159 AKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 218
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ Q KG T +++ IA+ L M+ +V
Sbjct: 219 IRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRKIAQTKGRTANLEEIAQELEMTPDQV 278
Query: 389 RNATEAVSKVFSLD 430
R V K SL+
Sbjct: 279 REVLLRVPKSISLE 292
[47][TOP]
>UniRef100_P96035 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
RepID=P96035_SYNSP
Length = 398
Score = 132 bits (332), Expect = 2e-29
Identities = 61/134 (45%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DL+Q G +GL R ++KFD +KG+R STY YWW
Sbjct: 159 AKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFSTYAYWW 218
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++R SRT+RLP H+ E+L I+ A+ ++ Q +G TPS+D +A++L M+ ++V
Sbjct: 219 IRQGITRGDRTQSRTIRLPVHVTEKLNKIKKAQRQISQTQGCTPSLDDVAQALEMTPEQV 278
Query: 389 RNATEAVSKVFSLD 430
R + V + SL+
Sbjct: 279 REVLQKVPRSVSLE 292
[48][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 132 bits (331), Expect = 3e-29
Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 160 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 219
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G PS + IAES+ M+ +K+
Sbjct: 220 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 279
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R ++ SL+ + G+ + I NP L+E++ ++
Sbjct: 280 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVSKTLLREDLEGVL- 332
Query: 569 ATLGEREKEI 598
ATL RE+++
Sbjct: 333 ATLSPRERDV 342
[49][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 132 bits (331), Expect = 3e-29
Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 157 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 216
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G PS + IAES+ M+ +K+
Sbjct: 217 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 276
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R ++ SL+ + G+ + I NP L+E++ ++
Sbjct: 277 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVSKTLLREDLEGVL- 329
Query: 569 ATLGEREKEI 598
ATL RE+++
Sbjct: 330 ATLSPRERDV 339
[50][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 132 bits (331), Expect = 3e-29
Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 157 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 216
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G PS + IAES+ M+ +K+
Sbjct: 217 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 276
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R ++ SL+ + G+ + I NP L+E++ ++
Sbjct: 277 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVSKTLLREDLEGVL- 329
Query: 569 ATLGEREKEI 598
ATL RE+++
Sbjct: 330 ATLSPRERDV 339
[51][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 132 bits (331), Expect = 3e-29
Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 158 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 217
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G PS + IAES+ M+ +K+
Sbjct: 218 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 277
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R ++ SL+ + G+ + I NP L+E++ ++
Sbjct: 278 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVSKTLLREDLEGVL- 330
Query: 569 ATLGEREKEI 598
ATL RE+++
Sbjct: 331 ATLSPRERDV 340
[52][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 132 bits (331), Expect = 3e-29
Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 161 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 220
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G PS + IAES+ M+ +K+
Sbjct: 221 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 280
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R ++ SL+ + G+ + I NP L+E++ ++
Sbjct: 281 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVSKTLLREDLEGVL- 333
Query: 569 ATLGEREKEI 598
ATL RE+++
Sbjct: 334 ATLSPRERDV 343
[53][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 132 bits (331), Expect = 3e-29
Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 158 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 217
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G PS + IAES+ M+ +K+
Sbjct: 218 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 277
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R ++ SL+ + G+ + I NP L+E++ ++
Sbjct: 278 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVSKTLLREDLEGVL- 330
Query: 569 ATLGEREKEI 598
ATL RE+++
Sbjct: 331 ATLSPRERDV 340
[54][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 132 bits (331), Expect = 3e-29
Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 157 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 216
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G PS + IAES+ M+ +K+
Sbjct: 217 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 276
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R ++ SL+ + G+ + I NP L+E++ ++
Sbjct: 277 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVSKTLLREDLEGVL- 329
Query: 569 ATLGEREKEI 598
ATL RE+++
Sbjct: 330 ATLSPRERDV 339
[55][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 131 bits (330), Expect = 4e-29
Identities = 77/198 (38%), Positives = 114/198 (57%), Gaps = 3/198 (1%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 196 LMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 255
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G PS + IAES+
Sbjct: 256 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESME 315
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIAD--TRLENNPWHGYDDLALK 544
M+ +K+R ++ SL+ G+ S + D NP L+
Sbjct: 316 MTIEKLRFIAKSAQLPISLETPI--------GKEEDSRLGDFIESDSENPELDVAKTLLR 367
Query: 545 EEVSKLISATLGEREKEI 598
E++ ++ ATL RE+++
Sbjct: 368 EDLEGVL-ATLSPRERDV 384
[56][TOP]
>UniRef100_Q9FD90 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus
RepID=Q9FD90_SYNEL
Length = 398
Score = 131 bits (330), Expect = 4e-29
Identities = 63/134 (47%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++ + +N+RLV+S+A++Y N G E+ DLVQ G +GL R +EKFD +KG+R STY YWW
Sbjct: 159 AKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 218
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ Q KG T +++ IA+ L M+ +V
Sbjct: 219 IRQGITRAIATQSRTIRLPVHVTEKLTRIKKAQRKIAQTKGRTANLEEIAQELEMTPDQV 278
Query: 389 RNATEAVSKVFSLD 430
R V K SL+
Sbjct: 279 REVLLRVPKSISLE 292
[57][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 131 bits (330), Expect = 4e-29
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++ SN+RLV+SIA+ Y G DL+Q G +GLL+ +E+FD KG++ STY WW
Sbjct: 36 AKKRFIESNLRLVVSIAKGYVGKGISFPDLIQEGNLGLLKAVERFDYRKGYKFSTYATWW 95
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
I+Q ++RA+ D +RT+R+P H+ E + L++ K LQ+ G PSI+ IAE +N+S+KK
Sbjct: 96 IKQTITRAIADQARTIRIPVHMVESVNKLLKIQKQFLQKLGREPSIEEIAEEMNISEKKA 155
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
+ E V + SL+ NG G+ IAD +P + + LKE+V +++S
Sbjct: 156 KVLLEIVQGIVSLEEPVGEDENGKLGD----IIADKEAV-DPVEELESMLLKEQVDEVLS 210
Query: 569 ATLGEREKEI 598
TL RE+++
Sbjct: 211 -TLAPREEKV 219
[58][TOP]
>UniRef100_C4DZ35 RNA polymerase sigma factor n=1 Tax=Streptobacillus moniliformis
DSM 12112 RepID=C4DZ35_9FUSO
Length = 379
Score = 131 bits (330), Expect = 4e-29
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++L SN+RLV+SIA+++ N G ++ DL+Q G IGL++ +EKF+S KGF+ STY WW
Sbjct: 141 AKQQLMESNLRLVVSIAKKHTNRGLKLLDLIQEGNIGLMKAVEKFESDKGFKFSTYATWW 200
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNA-KLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D RT+R+P H+ E + I+ A ++ LQE G P+ D +AE + M +KV
Sbjct: 201 IRQAITRAIADQGRTIRIPVHMIETINKIKKASRIHLQETGKEPTDDYLAEIVEMPVEKV 260
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
+N E SL+ + G+ ++ D + NP LKE+++ ++
Sbjct: 261 KNILEMNQDPISLETPVGSEDDSELGD----FVEDDKF-LNPHEATVRSVLKEKLNDVLR 315
Query: 569 ATLGEREKEI 598
L ERE+++
Sbjct: 316 KELNEREEQV 325
[59][TOP]
>UniRef100_B4U677 RNA polymerase sigma factor n=1 Tax=Hydrogenobaculum sp. Y04AAS1
RepID=B4U677_HYDS0
Length = 578
Score = 131 bits (329), Expect = 5e-29
Identities = 70/191 (36%), Positives = 120/191 (62%), Gaps = 2/191 (1%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
+++ + SN+RLV+SIA++Y N G DL+Q G +GL++ ++K+D KGF+ STY WW
Sbjct: 340 SKDMMVKSNLRLVVSIAKKYINRGLHFLDLIQEGNMGLMKAVDKYDYKKGFKFSTYATWW 399
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
I+Q ++RA+ D ++T+R+P H+ E + I +L QE G PS + IA++LNMS +KV
Sbjct: 400 IKQAITRAIADQAKTIRIPVHMIETINKISKVSKKLFQEYGREPSPEEIAKALNMSPEKV 459
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETH-HSYIADTRLENNPWHGYDDLALKEEVSKLI 565
R +++ + SL+ G +TH +I D+ + +NP L+E++ K+I
Sbjct: 460 RKILKSIQEPISLETPI-----GDDEDTHLKDFIEDSSI-SNPEEATARRLLREQIEKII 513
Query: 566 SATLGEREKEI 598
+ TL ++E+E+
Sbjct: 514 N-TLSDKEREV 523
[60][TOP]
>UniRef100_A0YQ90 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YQ90_9CYAN
Length = 404
Score = 131 bits (329), Expect = 5e-29
Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++ + +N+RLV+S+A++Y N G E+ DL+Q G +GL R +EKFD ++G+R STY YWW
Sbjct: 165 AKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWW 224
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ QEKG +ID IA L M+ +V
Sbjct: 225 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRIATIDDIAAELEMTPAQV 284
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R V + SL+ G +T + +T E +P +L ++ +L+
Sbjct: 285 REVLLKVPRSVSLETKV-----GSDKDTELGELLETE-EASPEDQLMRESLHRDLQQLL- 337
Query: 569 ATLGEREKEI 598
A L +RE+++
Sbjct: 338 ADLSDRERDV 347
[61][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 130 bits (328), Expect = 6e-29
Identities = 77/199 (38%), Positives = 120/199 (60%), Gaps = 4/199 (2%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 219 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 278
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 279 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 338
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA---L 541
M+ +K+R ++ SL+ G+ S + D +E++ + D+A L
Sbjct: 339 MTIEKLRFIAKSAQLPISLETPI--------GKEEDSRLGDF-IESDTENPEQDVAKNLL 389
Query: 542 KEEVSKLISATLGEREKEI 598
+E++ ++ ATL RE+++
Sbjct: 390 REDLEGVL-ATLSPRERDV 407
[62][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 130 bits (328), Expect = 6e-29
Identities = 77/199 (38%), Positives = 120/199 (60%), Gaps = 4/199 (2%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 202 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 261
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 262 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 321
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA---L 541
M+ +K+R ++ SL+ G+ S + D +E++ + D+A L
Sbjct: 322 MTIEKLRFIAKSAQLPISLETPI--------GKEEDSRLGDF-IESDTENPEQDVAKNLL 372
Query: 542 KEEVSKLISATLGEREKEI 598
+E++ ++ ATL RE+++
Sbjct: 373 REDLEGVL-ATLSPRERDV 390
[63][TOP]
>UniRef100_A8YAB5 Genome sequencing data, contig C249 n=1 Tax=Microcystis aeruginosa
PCC 7806 RepID=A8YAB5_MICAE
Length = 318
Score = 130 bits (328), Expect = 6e-29
Identities = 73/190 (38%), Positives = 120/190 (63%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YWW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + SRT+RLP H+ E+L I+ A+ +L Q+KG +I +AE L+++ K+V
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTPKQV 202
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R+ E + SLD + + GE + DT L + + +L+ ++ KL+
Sbjct: 203 RDYLERSRQPLSLDLKVGDNQDTELGE----LLEDTGLSPEDYTAHS--SLQVDLEKLM- 255
Query: 569 ATLGEREKEI 598
A L ++KE+
Sbjct: 256 ADLTPQQKEV 265
[64][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 130 bits (327), Expect = 8e-29
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 176 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 235
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 236 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 295
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 296 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKTLLRED 349
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 350 LEGVL-ATLSPRERDV 364
[65][TOP]
>UniRef100_P73666 RNA polymerase sigma factor n=1 Tax=Synechocystis sp. PCC 6803
RepID=P73666_SYNY3
Length = 318
Score = 130 bits (327), Expect = 8e-29
Identities = 65/144 (45%), Positives = 96/144 (66%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+ + E A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG
Sbjct: 73 LEKAIKEGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKG 132
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
+R STY YWWIRQ ++RA+ + SRT+RLP H+ E+L I+ A+ +L QEKG SI +A
Sbjct: 133 YRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAASIAELA 192
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
E L ++ K+VR E SLD
Sbjct: 193 EHLELTPKQVREYLERSRHPLSLD 216
[66][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 130 bits (327), Expect = 8e-29
Identities = 77/198 (38%), Positives = 114/198 (57%), Gaps = 3/198 (1%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 183 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 242
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G PS + IAES+
Sbjct: 243 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESME 302
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIAD--TRLENNPWHGYDDLALK 544
M+ +K+R ++ SL+ G+ S + D NP L+
Sbjct: 303 MTIEKLRFIAKSAQLPISLETPI--------GKEEDSRLGDFIESDSENPELDVAKTLLR 354
Query: 545 EEVSKLISATLGEREKEI 598
E++ ++ ATL RE+++
Sbjct: 355 EDLEGVL-ATLSPRERDV 371
[67][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 130 bits (327), Expect = 8e-29
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 176 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 235
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 236 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 295
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 296 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKTLLRED 349
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 350 LEGVL-ATLSPRERDV 364
[68][TOP]
>UniRef100_C5EQF6 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EQF6_9FIRM
Length = 381
Score = 130 bits (327), Expect = 8e-29
Identities = 73/193 (37%), Positives = 115/193 (59%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E+L +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+++STY WW
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQKKV 388
IRQ V+RAL D +RT+R+P H+ E + + + +L E G PS+ +AE+L+M++ KV
Sbjct: 205 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDKV 264
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
+ + SL+ GE S + D +NN P + + L+E +
Sbjct: 265 MEIMQIAREPASLETPI--------GEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDA 316
Query: 560 LISATLGEREKEI 598
L+ L ERE+++
Sbjct: 317 LL-GDLKERERQV 328
[69][TOP]
>UniRef100_C0CZ55 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0CZ55_9CLOT
Length = 381
Score = 130 bits (327), Expect = 8e-29
Identities = 73/193 (37%), Positives = 115/193 (59%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E+L +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+++STY WW
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQKKV 388
IRQ V+RAL D +RT+R+P H+ E + + + +L E G PS+ +AE+L+M++ KV
Sbjct: 205 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDKV 264
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
+ + SL+ GE S + D +NN P + + L+E +
Sbjct: 265 MEIMQIAREPASLETPI--------GEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDA 316
Query: 560 LISATLGEREKEI 598
L+ L ERE+++
Sbjct: 317 LL-GDLKERERQV 328
[70][TOP]
>UniRef100_A8S2E6 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8S2E6_9CLOT
Length = 381
Score = 130 bits (327), Expect = 8e-29
Identities = 73/193 (37%), Positives = 115/193 (59%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E+L +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+++STY WW
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQKKV 388
IRQ V+RAL D +RT+R+P H+ E + + + +L E G PS+ +AE+L+M++ KV
Sbjct: 205 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDKV 264
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
+ + SL+ GE S + D +NN P + + L+E +
Sbjct: 265 MEIMQIAREPASLETPI--------GEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDA 316
Query: 560 LISATLGEREKEI 598
L+ L ERE+++
Sbjct: 317 LL-GDLKERERQV 328
[71][TOP]
>UniRef100_B7K8M9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7K8M9_CYAP7
Length = 418
Score = 130 bits (326), Expect = 1e-28
Identities = 71/190 (37%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ + +N+RLV+S+A+RY N G E+ DL+Q G +GL R +EKFD +KG+R STY YWW
Sbjct: 179 AKNHMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 238
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SR +RLP H+ E+L I+ A+ ++ Q KG TP+++ +A ++M+ ++
Sbjct: 239 IRQGITRAIATQSRIIRLPVHITEKLNKIKKAQRKMAQIKGRTPTMEELAVEVDMTAPQI 298
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R V + SL+ G +T + +T E +P + L++++ L+
Sbjct: 299 REVLMRVPRSVSLEIKV-----GKEKDTELVDLLET-TEASPEESLVNETLRQDLQNLL- 351
Query: 569 ATLGEREKEI 598
A L RE+E+
Sbjct: 352 ADLTTREREV 361
[72][TOP]
>UniRef100_B5E4I8 RNA polymerase sigma factor n=1 Tax=Streptococcus pneumoniae G54
RepID=B5E4I8_STRP4
Length = 369
Score = 130 bits (326), Expect = 1e-28
Identities = 69/190 (36%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[73][TOP]
>UniRef100_Q3D699 RNA polymerase sigma factor n=7 Tax=Streptococcus agalactiae
RepID=Q3D699_STRAG
Length = 369
Score = 130 bits (326), Expect = 1e-28
Identities = 69/191 (36%), Positives = 118/191 (61%), Gaps = 1/191 (0%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKK 385
WIRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLI 565
VR + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVL 304
Query: 566 SATLGEREKEI 598
TL +RE+ +
Sbjct: 305 D-TLTDREENV 314
[74][TOP]
>UniRef100_Q3CZ52 RNA polymerase sigma factor n=1 Tax=Streptococcus agalactiae H36B
RepID=Q3CZ52_STRAG
Length = 369
Score = 130 bits (326), Expect = 1e-28
Identities = 69/191 (36%), Positives = 118/191 (61%), Gaps = 1/191 (0%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKK 385
WIRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLI 565
VR + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVL 304
Query: 566 SATLGEREKEI 598
TL +RE+ +
Sbjct: 305 D-TLTDREENV 314
[75][TOP]
>UniRef100_A4VWA5 RNA polymerase sigma factor n=6 Tax=Streptococcus suis
RepID=A4VWA5_STRSY
Length = 372
Score = 130 bits (326), Expect = 1e-28
Identities = 69/190 (36%), Positives = 118/190 (62%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 134 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 193
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ +KV
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPEKV 253
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 254 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 308
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 309 -TLTDREENV 317
[76][TOP]
>UniRef100_B2DVB6 RNA polymerase sigma factor n=1 Tax=Streptococcus pneumoniae
CDC0288-04 RepID=B2DVB6_STRPN
Length = 369
Score = 130 bits (326), Expect = 1e-28
Identities = 69/190 (36%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[77][TOP]
>UniRef100_P0A4J0 RNA polymerase sigma factor rpoD n=24 Tax=Streptococcus pneumoniae
RepID=RPOD_STRR6
Length = 369
Score = 130 bits (326), Expect = 1e-28
Identities = 69/190 (36%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[78][TOP]
>UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M18 RepID=Q8P1I9_STRP8
Length = 369
Score = 129 bits (325), Expect = 1e-28
Identities = 69/191 (36%), Positives = 117/191 (61%), Gaps = 1/191 (0%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKK 385
WIRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLI 565
VR + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVL 304
Query: 566 SATLGEREKEI 598
TL +RE+ +
Sbjct: 305 D-TLTDREENV 314
[79][TOP]
>UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M3 RepID=Q8K811_STRP3
Length = 369
Score = 129 bits (325), Expect = 1e-28
Identities = 69/191 (36%), Positives = 117/191 (61%), Gaps = 1/191 (0%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKK 385
WIRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLI 565
VR + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVL 304
Query: 566 SATLGEREKEI 598
TL +RE+ +
Sbjct: 305 D-TLTDREENV 314
[80][TOP]
>UniRef100_Q8DLJ2 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DLJ2_THEEB
Length = 375
Score = 129 bits (325), Expect = 1e-28
Identities = 63/135 (46%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ +L +N+RLV++IA++Y + G E DL+Q G +GL R +EKFD +KGFR STY YWW
Sbjct: 136 AKNQLLQANLRLVVNIAKKYQHHGVEFLDLIQEGSLGLERAVEKFDPTKGFRFSTYAYWW 195
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ SRT+RLP H+ E+L I+ A+ RL ++G PS+ IA+ LN+ +V
Sbjct: 196 IRQSITRAVASQSRTIRLPIHMVEKLNKIKRAQRRLAAQRGAMPSLADIAQELNLEVSQV 255
Query: 389 RNATEAVSKVFSLDR 433
R AV K +L++
Sbjct: 256 RQVLMAVPKSVALEQ 270
[81][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 229 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 288
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 289 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 348
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 349 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 402
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 403 LEGVL-ATLSPRERDV 417
[82][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 209 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 268
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 269 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 328
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 329 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 382
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 383 LEGVL-ATLSPRERDV 397
[83][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 193 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 252
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 253 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 312
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 313 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 366
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 367 LEGVL-ATLSPRERDV 381
[84][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 198 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 257
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 258 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 317
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 318 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 371
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 372 LEGVL-ATLSPRERDV 386
[85][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
RepID=C0QRZ3_PERMH
Length = 577
Score = 129 bits (325), Expect = 1e-28
Identities = 70/200 (35%), Positives = 119/200 (59%), Gaps = 1/200 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
+Q E + ++K+ SN+RLV+SIA++Y N G + DL+Q G IGL++ ++KFD KG
Sbjct: 329 IQEGRKEVNETKQKIVQSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFDYKKG 388
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIA 358
++ STY WWIRQ ++RA+ D +RT+R+P H+ E + L+R A+ +QE G P+ + IA
Sbjct: 389 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRVARSMVQELGREPTPEEIA 448
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 538
+ + M +KVR + SL+ G E+H + + +P A
Sbjct: 449 KKVGMPPEKVRKILRTSQEPISLETPI-----GDDDESHLGDFIEDKTVMSPEQHVLRQA 503
Query: 539 LKEEVSKLISATLGEREKEI 598
L++++ +++S TL ERE+++
Sbjct: 504 LRQQLEEVLS-TLSEREEQV 522
[86][TOP]
>UniRef100_B7KAB6 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 7424 RepID=B7KAB6_CYAP7
Length = 318
Score = 129 bits (325), Expect = 1e-28
Identities = 61/134 (45%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YWW
Sbjct: 83 AKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + SRT+RLP H+ E+L I+ A+ +L Q KG +I +AE L ++ ++V
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQAKGRAATISELAEELELTPRQV 202
Query: 389 RNATEAVSKVFSLD 430
R+ E + SLD
Sbjct: 203 RDYLERARQPLSLD 216
[87][TOP]
>UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5V244_ROSS1
Length = 401
Score = 129 bits (325), Expect = 1e-28
Identities = 75/200 (37%), Positives = 109/200 (54%), Gaps = 1/200 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L W+ E ARE+L +N+RLV+SIA++Y G + DL+Q G IGL+R EKFD KG
Sbjct: 154 LHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKG 213
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQE-KGITPSIDRIA 358
++ STY WWIRQ ++R + D SRT+RLP H+ E + + A R+Q+ G P+ D IA
Sbjct: 214 YKFSTYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRASNRIQQTTGRDPTPDEIA 273
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 538
L + +KVR EA + SL+ G G+T + + P
Sbjct: 274 LELGIPVEKVRRVLEAARQTISLETPI-----GTEGDTVLADFIEDGKGVTPMDSASHHI 328
Query: 539 LKEEVSKLISATLGEREKEI 598
L+E++ + L ERE+ I
Sbjct: 329 LREQIDSALE-KLPERERRI 347
[88][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 208 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 267
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 268 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 327
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 328 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 381
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 382 LEGVL-ATLSPRERDV 396
[89][TOP]
>UniRef100_A2RFA3 RNA polymerase sigma factor n=9 Tax=Streptococcus pyogenes
RepID=A2RFA3_STRPG
Length = 369
Score = 129 bits (325), Expect = 1e-28
Identities = 69/191 (36%), Positives = 117/191 (61%), Gaps = 1/191 (0%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY W
Sbjct: 130 MAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKK 385
WIRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE + M+ K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDK 249
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLI 565
VR + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 250 VREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVL 304
Query: 566 SATLGEREKEI 598
TL +RE+ +
Sbjct: 305 D-TLTDREENV 314
[90][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 209 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 268
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 269 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 328
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 329 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 382
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 383 LEGVL-ATLSPRERDV 397
[91][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 237 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 296
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 297 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 356
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 357 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 410
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 411 LEGVL-ATLSPRERDV 425
[92][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 216 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 275
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 276 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 335
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 336 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 389
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 390 LEGVL-ATLSPRERDV 404
[93][TOP]
>UniRef100_B4WMN7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WMN7_9SYNE
Length = 467
Score = 129 bits (325), Expect = 1e-28
Identities = 71/200 (35%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+ L + A+ ++ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG
Sbjct: 219 LRQKLRQARAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKG 278
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
++ STY YWWIRQG++R + +++RT+RLP H+ E+L ++ A+ L +E TP+ +A
Sbjct: 279 YKFSTYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRKELQRTPTEVEVA 338
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 538
+L M+ +++R + K SL+ G +T + + +P +
Sbjct: 339 AALEMTPEQLRTLQQVQRKSLSLNHRV-----GKGEDTELMELLEDGNSLSPESQISESM 393
Query: 539 LKEEVSKLISATLGEREKEI 598
+++E+S +++ L EREKEI
Sbjct: 394 MRQEISDVLTEVLTEREKEI 413
[94][TOP]
>UniRef100_B4WFP5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WFP5_9SYNE
Length = 431
Score = 129 bits (325), Expect = 1e-28
Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E + +N+RLV+S+A++Y N G E+ DL+Q G +GL R +EKFD +KG+R STY YWW
Sbjct: 192 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 251
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ Q +G T + IA+ L+M+ ++
Sbjct: 252 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQTQGRTAKAEDIAKELDMTVAQI 311
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R V + SLD G +T + +T + +P +LK E+ +L++
Sbjct: 312 REVLLKVPRSVSLDTKV-----GKDRDTELGDLLETE-DISPEDRLMRESLKRELHQLLT 365
Query: 569 ATLGEREKEI 598
L RE+E+
Sbjct: 366 -DLTTREQEV 374
[95][TOP]
>UniRef100_A4CX44 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CX44_SYNPV
Length = 376
Score = 129 bits (325), Expect = 1e-28
Identities = 63/144 (43%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ L E AR+++ +N+RLV+++A++Y G E+ DLVQ G +GL R +EKFD ++G
Sbjct: 126 LQQRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRG 185
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
FR STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ + + EKG S+ +A
Sbjct: 186 FRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASEKGRLASVSDLA 245
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
+ L +S++ VR V + SL+
Sbjct: 246 KELGVSEETVRQTLARVPRSVSLE 269
[96][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 205 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 264
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 265 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 324
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 325 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 378
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 379 LEGVL-ATLSPRERDV 393
[97][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 214 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 273
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 274 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 333
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 334 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 387
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 388 LEGVL-ATLSPRERDV 402
[98][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 129 bits (325), Expect = 1e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 227 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 286
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 287 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 346
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 347 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 400
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 401 LEGVL-ATLSPRERDV 415
[99][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 129 bits (325), Expect = 1e-28
Identities = 75/197 (38%), Positives = 114/197 (57%), Gaps = 4/197 (2%)
Frame = +2
Query: 20 ECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTY 199
E +++K+ SN+RLV+SI + Y G + DL+Q G +GL+RG EKFD KGF+ STY
Sbjct: 346 EGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAEKFDPDKGFKFSTY 405
Query: 200 VYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNA-KLRLQEKGITPSIDRIAESLNMS 376
+WWIRQ V+RA+ D SR +RLP HL+E + I A K+ +QE G P + +AE + MS
Sbjct: 406 AHWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQPRDEEVAELVGMS 465
Query: 377 QKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDL---ALKE 547
+K++ ++ S+DR L G+ I + + + DDL LK+
Sbjct: 466 VEKLKFIVKSAKTPSSMDR--------LIGKEKDQSIGEMIADKDVESPEDDLIRQVLKQ 517
Query: 548 EVSKLISATLGEREKEI 598
+V ++ TL RE+E+
Sbjct: 518 DVDGVL-CTLNPREREV 533
[100][TOP]
>UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG
18311 RepID=Q5M3E3_STRT2
Length = 369
Score = 129 bits (324), Expect = 2e-28
Identities = 69/190 (36%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[101][TOP]
>UniRef100_Q03JL2 RNA polymerase sigma factor n=2 Tax=Streptococcus thermophilus
RepID=Q03JL2_STRTD
Length = 369
Score = 129 bits (324), Expect = 2e-28
Identities = 69/190 (36%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[102][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 129 bits (324), Expect = 2e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 159 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 218
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 219 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 278
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 279 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPDQDVAKNLLRED 332
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 333 LEGVL-ATLSPRERDV 347
[103][TOP]
>UniRef100_Q4C529 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C529_CROWT
Length = 318
Score = 129 bits (324), Expect = 2e-28
Identities = 61/134 (45%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YWW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + SRT+RLP H+ E+L I+ A+ L Q+KG +I +AE L+++ K+V
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATISELAEELDLTPKQV 202
Query: 389 RNATEAVSKVFSLD 430
R+ E + SLD
Sbjct: 203 RDYLERSRQPLSLD 216
[104][TOP]
>UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD
Length = 392
Score = 129 bits (324), Expect = 2e-28
Identities = 69/190 (36%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++KL SN+RLV+SIA+++ N G +M DL+Q G +GL++ +EKF+ KGF+ STY WW
Sbjct: 155 AKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNMGLMKAVEKFEYEKGFKFSTYATWW 214
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D RT+R+P H+ E + I + +++ LQE G P+ + +AE L + +KV
Sbjct: 215 IRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKEPTAEELAEKLELPVEKV 274
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
++ E SL+ + G+ ++ D + NP+ + LKE++ +++
Sbjct: 275 KSILEMNQDPISLETPVGSEEDSELGD----FVEDDKFA-NPYDATTRILLKEQLDEVLK 329
Query: 569 ATLGEREKEI 598
TL ERE+ +
Sbjct: 330 -TLNEREEMV 338
[105][TOP]
>UniRef100_C2LRD4 RNA polymerase sigma factor n=1 Tax=Streptococcus salivarius SK126
RepID=C2LRD4_STRSL
Length = 369
Score = 129 bits (324), Expect = 2e-28
Identities = 69/190 (36%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[106][TOP]
>UniRef100_C2KW80 RNA polymerase sigma factor n=1 Tax=Oribacterium sinus F0268
RepID=C2KW80_9FIRM
Length = 385
Score = 129 bits (324), Expect = 2e-28
Identities = 71/190 (37%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++L +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD KGF++STY WW
Sbjct: 148 AKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDPEKGFKLSTYATWW 207
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQKKV 388
IRQ V+RAL D +RT+R+P H+ E + + + +L E G PS+ +AE L+M+++KV
Sbjct: 208 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVKELAEHLDMTEEKV 267
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
+ + + SL+ + G+ ++ADT + +P + + L+E + L+
Sbjct: 268 QEIMQIAREPASLETPIGEEDDSNLGD----FVADTNV-LSPEGNVESVMLREHIDTLL- 321
Query: 569 ATLGEREKEI 598
L ERE+++
Sbjct: 322 GDLKERERQV 331
[107][TOP]
>UniRef100_B1SG84 RNA polymerase sigma factor n=1 Tax=Streptococcus infantarius
subsp. infantarius ATCC BAA-102 RepID=B1SG84_9STRE
Length = 369
Score = 129 bits (324), Expect = 2e-28
Identities = 69/190 (36%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[108][TOP]
>UniRef100_O33662 RNA polymerase sigma factor rpoD n=2 Tax=Streptococcus mutans
RepID=RPOD_STRMU
Length = 371
Score = 129 bits (324), Expect = 2e-28
Identities = 69/190 (36%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 133 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 192
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 252
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 253 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 307
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 308 -TLTDREENV 316
[109][TOP]
>UniRef100_Q113W5 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q113W5_TRIEI
Length = 410
Score = 129 bits (323), Expect = 2e-28
Identities = 60/134 (44%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR ++ +N+RLV+SIA++Y N G E+ DL+Q G +GL R +EKFD +G+R STY YWW
Sbjct: 171 ARHQMISTNLRLVVSIAKKYQNRGVELLDLIQEGTLGLERAVEKFDPQRGYRFSTYAYWW 230
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ + ++ QEKG T ++ IA L ++ +V
Sbjct: 231 IRQGITRAIATQSRTIRLPIHVSEKLNKIKKVQQKIFQEKGYTAKVEEIARELKITAAQV 290
Query: 389 RNATEAVSKVFSLD 430
R + SL+
Sbjct: 291 REVLVKIPHSVSLE 304
[110][TOP]
>UniRef100_C5WFT4 RNA polymerase sigma factor n=1 Tax=Streptococcus dysgalactiae
subsp. equisimilis GGS_124 RepID=C5WFT4_STRDG
Length = 369
Score = 129 bits (323), Expect = 2e-28
Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE + M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[111][TOP]
>UniRef100_C0MGY0 RNA polymerase sigma factor n=1 Tax=Steptococcus equi subsp.
zooepidemicus H70 RepID=C0MGY0_STRS7
Length = 369
Score = 129 bits (323), Expect = 2e-28
Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE + M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[112][TOP]
>UniRef100_C0M883 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. equi
4047 RepID=C0M883_STRE4
Length = 369
Score = 129 bits (323), Expect = 2e-28
Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE + M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[113][TOP]
>UniRef100_B9DRV6 RNA polymerase sigma factor n=1 Tax=Streptococcus uberis 0140J
RepID=B9DRV6_STRU0
Length = 369
Score = 129 bits (323), Expect = 2e-28
Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE + M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[114][TOP]
>UniRef100_B4U2H7 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp.
zooepidemicus MGCS10565 RepID=B4U2H7_STREM
Length = 369
Score = 129 bits (323), Expect = 2e-28
Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD SKGF+ STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE + M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKV 250
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 251 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 305
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 306 -TLTDREENV 314
[115][TOP]
>UniRef100_B1X0Q3 Group 2 sigma-70 RNA polymerase sigma factor D n=1 Tax=Cyanothece
sp. ATCC 51142 RepID=B1X0Q3_CYAA5
Length = 318
Score = 129 bits (323), Expect = 2e-28
Identities = 60/134 (44%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YWW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + SRT+RLP H+ E+L I+ A+ L Q+KG ++ +AE L+++ K+V
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVTELAEELDLTPKQV 202
Query: 389 RNATEAVSKVFSLD 430
R E + SLD
Sbjct: 203 REYLERARQPLSLD 216
[116][TOP]
>UniRef100_B1WQH6 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQH6_CYAA5
Length = 297
Score = 129 bits (323), Expect = 2e-28
Identities = 74/192 (38%), Positives = 119/192 (61%), Gaps = 3/192 (1%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR+K+ +N+RLV+SIA++Y N G + DL+Q G +GL+RG+EKFD S+G++ STY YWW
Sbjct: 61 ARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFSTYAYWW 120
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H++E L R + L K G P+ IAE++++S K+
Sbjct: 121 IRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAENMDISVDKL 180
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKL-- 562
R +A K S SLN + E +H+ + + + D + +E++S++
Sbjct: 181 RFLQQAAFKTKS------RSLNIVIDE-NHTELGQLLPDEDSVSPSDFVKQQEKISQINR 233
Query: 563 ISATLGEREKEI 598
+ L R+KE+
Sbjct: 234 MLENLSPRQKEV 245
[117][TOP]
>UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NGG2_ROSCS
Length = 405
Score = 129 bits (323), Expect = 2e-28
Identities = 74/200 (37%), Positives = 110/200 (55%), Gaps = 1/200 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L W+ E ARE+L +N+RLV+SIA++Y G + DL+Q G IGL+R EKFD KG
Sbjct: 158 LHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKG 217
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQE-KGITPSIDRIA 358
++ STY WWIRQ ++R + D SRT+RLP H+ E + + R+Q+ G P+ D IA
Sbjct: 218 YKFSTYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRDPTPDEIA 277
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 538
L + +KVR EA + SL+ P + + + T +E+ H
Sbjct: 278 LELGIPVEKVRRVLEAARQTISLETPIGPEGDSVLADFIEDGKGATPMESASSH-----I 332
Query: 539 LKEEVSKLISATLGEREKEI 598
L+E++ + L ERE+ I
Sbjct: 333 LREQIDSALE-KLPERERRI 351
[118][TOP]
>UniRef100_A7HK63 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum
Rt17-B1 RepID=A7HK63_FERNB
Length = 372
Score = 129 bits (323), Expect = 2e-28
Identities = 72/190 (37%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E+L +SN+RLV+S+A+RY G DL+Q G +GL++ +EKFD SKG++ STY WW
Sbjct: 130 AKEELIISNLRLVVSMAKRYLGKGLSFLDLIQEGSLGLIKAVEKFDWSKGYKFSTYATWW 189
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLR-LQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + I+ K +QE G PSI+ IAE + K+
Sbjct: 190 IRQAITRAIADQARTIRVPVHMVETINKIQKIKREYVQEHGEEPSIEYIAEQVGKPVDKI 249
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
+A + SL+ +N + +IAD + +P ++EE+ KL+
Sbjct: 250 EEILQAAPETLSLE----TPVNEEDDSSMGDFIADESI-GSPKKEAIRTLMREEIDKLLE 304
Query: 569 ATLGEREKEI 598
TL +REK++
Sbjct: 305 -TLNDREKKV 313
[119][TOP]
>UniRef100_A5GWT3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GWT3_SYNR3
Length = 370
Score = 129 bits (323), Expect = 2e-28
Identities = 61/144 (42%), Positives = 98/144 (68%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ L+ A+E++ +N+RLV+++A++Y + G E+ DLVQ G +GL RG+EK+D ++G
Sbjct: 121 LQRQLLHGRRAKERMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERGVEKYDPTRG 180
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIA 358
FR STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ A+ + + G T ++ ++
Sbjct: 181 FRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKAQRDIASRLGRTATLKDLS 240
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
+ L +S++ VR V + SLD
Sbjct: 241 QELQLSEEVVRQTLMRVPRSVSLD 264
[120][TOP]
>UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii
F0254 RepID=C9MZ09_9FUSO
Length = 392
Score = 129 bits (323), Expect = 2e-28
Identities = 69/190 (36%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++KL SN+RLV+SIA+++ N G +M DL+Q G +GL++ +EKF+ KGF+ STY WW
Sbjct: 155 AKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNMGLMKAVEKFEYEKGFKFSTYATWW 214
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D RT+R+P H+ E + I + +++ LQE G P+ + +AE L + +KV
Sbjct: 215 IRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKEPTAEELAEKLELPVEKV 274
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
++ E SL+ + G+ ++ D + NP+ + LKE++ +++
Sbjct: 275 KSILEMNQDPISLETPVGSEEDSELGD----FVEDDKFA-NPYDATTRVLLKEQLDEVLK 329
Query: 569 ATLGEREKEI 598
TL ERE+ +
Sbjct: 330 -TLNEREEMV 338
[121][TOP]
>UniRef100_C7QVB1 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QVB1_CYAP0
Length = 318
Score = 129 bits (323), Expect = 2e-28
Identities = 61/134 (45%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YWW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + SRT+RLP H+ E+L I+ A+ +L QEKG +I +AE L ++ ++V
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAATIAELAEELELTPRQV 202
Query: 389 RNATEAVSKVFSLD 430
R E + SLD
Sbjct: 203 REYLERARQPLSLD 216
[122][TOP]
>UniRef100_B5W322 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5W322_SPIMA
Length = 407
Score = 129 bits (323), Expect = 2e-28
Identities = 61/134 (45%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++ + +N+RLV+S+A++Y N G E+ DL+Q G +GL R +EKFD ++G+R STY YWW
Sbjct: 168 AKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWW 227
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ ++ QEK T +ID IA L M+ ++
Sbjct: 228 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSRTATIDDIATELKMTPDQI 287
Query: 389 RNATEAVSKVFSLD 430
R V + SL+
Sbjct: 288 REVLLRVPRSVSLE 301
[123][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 129 bits (323), Expect = 2e-28
Identities = 75/196 (38%), Positives = 113/196 (57%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 261 LMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 320
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K QE G P+ + IAES+
Sbjct: 321 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESME 380
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 381 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 434
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 435 LEGVL-ATLSPRERDV 449
[124][TOP]
>UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC
BAA-835 RepID=B2UM02_AKKM8
Length = 688
Score = 128 bits (322), Expect = 3e-28
Identities = 67/200 (33%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+ WL E A++++ +N+RLV+SIA++Y N G DL+Q G +GL++ +EKF+ +G
Sbjct: 437 LRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 496
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIA 358
++ STY WWIRQ ++R++ D +RT+R+P H+ E + L+R K +QE G P+ + IA
Sbjct: 497 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIA 556
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 538
E +++ ++VR+ + + SL G +T + + NP
Sbjct: 557 EEIHLPVERVRSVLKMAQQPISLQAPV-----GDSDDTSFGDFIEDKAAENPMEEASFSF 611
Query: 539 LKEEVSKLISATLGEREKEI 598
LKE++ ++ TL +RE+E+
Sbjct: 612 LKEKIKDVLD-TLTDREREV 630
[125][TOP]
>UniRef100_A7NS26 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NS26_ROSCS
Length = 399
Score = 128 bits (322), Expect = 3e-28
Identities = 74/190 (38%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR+ L +N+RLV+SIA++Y + G M DLVQ G IGL+R +EKFD +KG + STY WW
Sbjct: 162 ARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATWW 221
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQE-KGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP H+ E + ++ A +LQ+ P+ + IA+++ +S KV
Sbjct: 222 IRQAITRAIADQSRTIRLPVHMGEAISQVKRASHKLQQMMQREPTPEEIADAMGISSTKV 281
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R EA SL+ G G+ +I D R+ + P L+E++ +++
Sbjct: 282 RRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRI-STPAEAAAASMLREQLEEVLQ 336
Query: 569 ATLGEREKEI 598
L ERE++I
Sbjct: 337 -KLPERERKI 345
[126][TOP]
>UniRef100_C5ZWP6 RNA polymerase sigma factor n=1 Tax=Helicobacter canadensis MIT
98-5491 RepID=C5ZWP6_9HELI
Length = 616
Score = 128 bits (322), Expect = 3e-28
Identities = 73/190 (38%), Positives = 110/190 (57%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+A SN+RLV+SIA+RY N G DL+Q G IGL++ ++KF+ KG++ STY WW
Sbjct: 377 AKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWW 436
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLR-LQEKGITPSIDRIAESLNMSQKKV 388
IRQ +SRA+ D +RT+R+P H+ E + I + LQE+G P ID+IAE + + KV
Sbjct: 437 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQEEGKEPDIDKIAEEVGLPVDKV 496
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
+N + + SL+ P NG G+ + + P LKE++ ++
Sbjct: 497 KNVIKITKEPISLEA---PIGNGEDGK--FGDFVEDKGSVGPMESILKEDLKEQIDDVLD 551
Query: 569 ATLGEREKEI 598
L EREK +
Sbjct: 552 -QLNEREKAV 560
[127][TOP]
>UniRef100_A5Z979 RNA polymerase sigma factor n=1 Tax=Eubacterium ventriosum ATCC
27560 RepID=A5Z979_9FIRM
Length = 429
Score = 128 bits (322), Expect = 3e-28
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+A+EKL +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+++STY W
Sbjct: 190 VAKEKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 249
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQKK 385
WIRQ V+RAL D++RT+R+P H+ E + + + +L E G PS +A +L+M+++K
Sbjct: 250 WIRQSVTRALADHARTIRVPVHMVETINRMSKMQRKLTLELGYEPSTKELATALDMTEEK 309
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVS 556
V + + SL+ GE S + D +NN P + + L+E +
Sbjct: 310 VLEIMQIAREPASLETPI--------GEEDDSNLGDFVADNNTVTPEANIESVMLREHID 361
Query: 557 KLISATLGEREKEI 598
L+ L +RE+E+
Sbjct: 362 VLLQ-DLKDREREV 374
[128][TOP]
>UniRef100_UPI0001BB55B2 RNA polymerase sigma factor RpoD n=1 Tax=Streptococcus sp.
2_1_36FAA RepID=UPI0001BB55B2
Length = 370
Score = 128 bits (321), Expect = 4e-28
Identities = 68/190 (35%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD +KGF+ STY WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYTKGFKFSTYATWW 191
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 251
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 252 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 306
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 307 -TLTDREENV 315
[129][TOP]
>UniRef100_B8HU39 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HU39_CYAP4
Length = 372
Score = 128 bits (321), Expect = 4e-28
Identities = 69/200 (34%), Positives = 119/200 (59%), Gaps = 1/200 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ + +A+ K+ SN+RLV+SIA+RY N G DLVQ G +GL R EKFD KG
Sbjct: 124 LQIRIYRGQVAKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQEGALGLNRATEKFDPEKG 183
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
F+ STY YWWIRQG++RA+ ++SRT+RLP H+ E+L ++ + L +E P+ +A
Sbjct: 184 FKFSTYAYWWIRQGITRAIANDSRTIRLPIHIVEKLNKLKKLQRHLKKELQRNPTEQELA 243
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 538
++L ++ ++++ A + SL+R G +T + + +P ++
Sbjct: 244 DALEITLEQLQMLQRARQQALSLNRRV-----GREEDTELLDLLEADSTQSPEKQMGEVM 298
Query: 539 LKEEVSKLISATLGEREKEI 598
+++E+S+L+ L ++E+++
Sbjct: 299 MRQEISQLLDLVLTKQERDV 318
[130][TOP]
>UniRef100_B0C890 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0C890_ACAM1
Length = 318
Score = 128 bits (321), Expect = 4e-28
Identities = 62/144 (43%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ L E A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG
Sbjct: 73 LQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKG 132
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIA 358
+R STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + +L +K G +I +A
Sbjct: 133 YRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAATISELA 192
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
SL+++ K+VR E + SLD
Sbjct: 193 TSLDLTTKQVREYLERARQPLSLD 216
[131][TOP]
>UniRef100_A8AXP5 RNA polymerase sigma factor n=1 Tax=Streptococcus gordonii str.
Challis RepID=A8AXP5_STRGC
Length = 370
Score = 128 bits (321), Expect = 4e-28
Identities = 68/190 (35%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD +KGF+ STY WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYTKGFKFSTYATWW 191
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 251
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 252 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 306
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 307 -TLTDREENV 315
[132][TOP]
>UniRef100_A3CM49 RNA polymerase sigma factor n=1 Tax=Streptococcus sanguinis SK36
RepID=A3CM49_STRSV
Length = 370
Score = 128 bits (321), Expect = 4e-28
Identities = 68/190 (35%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD +KGF+ STY WW
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYTKGFKFSTYATWW 191
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G P+ ++IAE ++M+ KV
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 251
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + NP + L+E++ +++
Sbjct: 252 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD 306
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 307 -TLTDREENV 315
[133][TOP]
>UniRef100_C7QSX1 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QSX1_CYAP0
Length = 417
Score = 128 bits (321), Expect = 4e-28
Identities = 59/134 (44%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+S+A++Y + G E+ DL+Q G +GL R +EKFD +KG+R STY YWW
Sbjct: 178 AKEQMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 237
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SR +RLP H+ E+L I+ A+ +L QEKG +I+ +++ L+MS +++
Sbjct: 238 IRQGITRAISTQSRIIRLPVHITEKLNKIKRAQRKLSQEKGRKATIEEMSKELDMSAEQI 297
Query: 389 RNATEAVSKVFSLD 430
R + + SL+
Sbjct: 298 REVLLRIPRSVSLE 311
[134][TOP]
>UniRef100_A8S2D4 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8S2D4_9CLOT
Length = 406
Score = 128 bits (321), Expect = 4e-28
Identities = 72/190 (37%), Positives = 110/190 (57%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A KL +N+RLV+SIA+RY G DLVQ G +GL++ +EKFD +KG+R+STY WW
Sbjct: 169 AGRKLVEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLMKAVEKFDYAKGYRLSTYATWW 228
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIAESLNMSQKKV 388
++Q ++R+L D SRT+RLP H+ E + IR A+ L K G PS++ +AE +NMS K+V
Sbjct: 229 VKQSITRSLADQSRTIRLPVHMVEAVNKIRRAQRSLSVKLGREPSMEEVAEEVNMSGKRV 288
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
+A SL+ + G ++AD + + L+EE+ ++
Sbjct: 289 AELIQASGDTVSLE----TPVGDEEGSNLGDFVADDANASTE-DKAESFLLREEIDSMLQ 343
Query: 569 ATLGEREKEI 598
L RE+E+
Sbjct: 344 G-LNPREREV 352
[135][TOP]
>UniRef100_A3ITT4 RNA polymerase sigma factor SigD n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ITT4_9CHRO
Length = 318
Score = 128 bits (321), Expect = 4e-28
Identities = 60/134 (44%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YWW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + SRT+RLP H+ E+L I+ A+ L Q+KG ++ +AE L+++ K+V
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVVELAEELDLTPKQV 202
Query: 389 RNATEAVSKVFSLD 430
R E + SLD
Sbjct: 203 REYLERARQPLSLD 216
[136][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 128 bits (321), Expect = 4e-28
Identities = 72/200 (36%), Positives = 122/200 (61%), Gaps = 2/200 (1%)
Frame = +2
Query: 5 QAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGF 184
+A L + A++K+ SN+RLV+SIA+ Y G + DL+Q G +GL+RG EKFD +KGF
Sbjct: 327 EARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKFDPTKGF 386
Query: 185 RISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAK-LRLQEKGITPSIDRIAE 361
+ STY +WWIRQ V+R++ D SRT+RLP HL+E + I AK + +QE G + +AE
Sbjct: 387 KFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEEVAE 446
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETH-HSYIADTRLENNPWHGYDDLA 538
+ ++ +K+++ ++ S++R G G+T +ADT ++ +P
Sbjct: 447 LVGLTVEKLKSVVKSAKAPGSMERPI-----GKDGDTTLGELVADTDVD-SPEDAIVKQL 500
Query: 539 LKEEVSKLISATLGEREKEI 598
+++++ ++ TL RE+E+
Sbjct: 501 MRQDIEGVL-RTLNPREREV 519
[137][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 127 bits (320), Expect = 5e-28
Identities = 73/193 (37%), Positives = 118/193 (61%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GLL+ +EKFD KG++ STY WW
Sbjct: 180 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWW 239
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R ++ LQEKG P+ + IA+ +NM +KV
Sbjct: 240 IRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKV 299
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D +++ P LKE++ +
Sbjct: 300 REILKIAQEPVSLETPI--------GEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLE 351
Query: 560 LISATLGEREKEI 598
++ +L EREK++
Sbjct: 352 VLD-SLNEREKKV 363
[138][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 127 bits (320), Expect = 5e-28
Identities = 73/193 (37%), Positives = 118/193 (61%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GLL+ +EKFD KG++ STY WW
Sbjct: 174 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWW 233
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R ++ LQEKG P+ + IA+ +NM +KV
Sbjct: 234 IRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKV 293
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D +++ P LKE++ +
Sbjct: 294 REILKIAQEPVSLETPI--------GEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLE 345
Query: 560 LISATLGEREKEI 598
++ +L EREK++
Sbjct: 346 VLD-SLNEREKKV 357
[139][TOP]
>UniRef100_B4VH85 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4VH85_9CYAN
Length = 374
Score = 127 bits (320), Expect = 5e-28
Identities = 70/194 (36%), Positives = 119/194 (61%), Gaps = 4/194 (2%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+++ K+ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD +KG++ STY YW
Sbjct: 135 ISKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPAKGYKFSTYAYW 194
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIAESLNMSQKK 385
WIRQ ++R + +++RT+RLP H+ E+L ++ + L++K TP +AE+L++S+
Sbjct: 195 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKVQRELKQKLQRTPDETELAEALDISRTN 254
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVS 556
+R ++ L R + SLN G+ + + D +N+ P + +++E+S
Sbjct: 255 LR-------QLLQLRRRSL-SLNHRVGKGEDTELVDLLEDNDLHLPEQQMSESMMRQEIS 306
Query: 557 KLISATLGEREKEI 598
++S L EREK++
Sbjct: 307 DVLSDVLTEREKDV 320
[140][TOP]
>UniRef100_A3YTL7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YTL7_9SYNE
Length = 398
Score = 127 bits (320), Expect = 5e-28
Identities = 79/204 (38%), Positives = 114/204 (55%), Gaps = 5/204 (2%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ L+ AR+++ +N+RLV+++A++Y G E+ DLVQ G +GL R +EK+D ++G
Sbjct: 148 LQQRLLRGRRARDRMIQANLRLVVAVAKKYQKRGVELLDLVQEGTLGLERAVEKYDPTRG 207
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
FR STY YWWIRQGV+RA+ SRT+RLP H+ E+L I+ A+ + + G T S+ +A
Sbjct: 208 FRFSTYAYWWIRQGVTRAIATQSRTIRLPVHVTEKLNRIKKAQRQFASDHGRTASLAELA 267
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD----RDAFPSLNGLPGETHHSYIADTRLENNPWHGY 526
E+L S++ VR V + SL+ RD L L T S + L H
Sbjct: 268 EALQWSEEAVRLTLLRVPRSISLEAKVGRDQDTPLGDLLEAT--SDTPEQSLTRQQLHSD 325
Query: 527 DDLALKEEVSKLISATLGEREKEI 598
D L E L ERE E+
Sbjct: 326 LDALLDE---------LSEREAEV 340
[141][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 127 bits (319), Expect = 7e-28
Identities = 73/203 (35%), Positives = 118/203 (58%), Gaps = 4/203 (1%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
+QA E A+++L+ +N+RLV+SIA+RY G + DL+Q G +GL++ +EKFD +KG
Sbjct: 117 IQAGGPEGEKAKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKG 176
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLR-LQEKGITPSIDRIA 358
F+ STY WWIRQ ++RA+ D +RT+R+P H+ E + ++ + L E G PS + IA
Sbjct: 177 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHEYGHDPSAEEIA 236
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYD 529
E L+MS KVR + SL+ GE S++ D +++ P
Sbjct: 237 ERLDMSVDKVREIMRVAQEPVSLETPI--------GEEEDSHLGDFIPDDDAPVPAEAAS 288
Query: 530 DLALKEEVSKLISATLGEREKEI 598
LKE+++ ++ TL RE+++
Sbjct: 289 QTLLKEQLADVLK-TLTPREEKV 310
[142][TOP]
>UniRef100_Q3B0L4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3B0L4_SYNS9
Length = 332
Score = 127 bits (319), Expect = 7e-28
Identities = 56/132 (42%), Positives = 95/132 (71%), Gaps = 1/132 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+ L + H A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G
Sbjct: 87 LKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 146
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
++ STY YWWIRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TP++ +A
Sbjct: 147 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELA 206
Query: 359 ESLNMSQKKVRN 394
+ +++ + +V++
Sbjct: 207 QFVDLPEDEVKD 218
[143][TOP]
>UniRef100_B1XQ38 Sigma factor n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XQ38_SYNP2
Length = 318
Score = 127 bits (319), Expect = 7e-28
Identities = 60/134 (44%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YWW
Sbjct: 83 AKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + SRT+RLP H+ E+L I+ A+ +L Q G + SI +A+ L ++ K+V
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASIPELADELGLTTKQV 202
Query: 389 RNATEAVSKVFSLD 430
R+ E + SLD
Sbjct: 203 RDYLEKSRQPLSLD 216
[144][TOP]
>UniRef100_A5GQ42 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GQ42_SYNR3
Length = 324
Score = 127 bits (319), Expect = 7e-28
Identities = 59/144 (40%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+ L+ A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G
Sbjct: 79 LRRRLINGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 138
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
++ STY YWWIRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TP++ +A
Sbjct: 139 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVGELA 198
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
E L + + +V++ + SL+
Sbjct: 199 EFLELPEPEVKDLLSRARQPVSLE 222
[145][TOP]
>UniRef100_A5GPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GPM0_SYNPW
Length = 376
Score = 127 bits (319), Expect = 7e-28
Identities = 62/144 (43%), Positives = 94/144 (65%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ L E AR+++ +N+RLV+++A++Y G E+ DLVQ G +GL R +EKFD ++G
Sbjct: 126 LQRRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRG 185
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
FR STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ + + E+G S+ +A
Sbjct: 186 FRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASEQGRLASVSDLA 245
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
+ L +S+ VR V + SL+
Sbjct: 246 KELGVSEDTVRQTLARVPRSVSLE 269
[146][TOP]
>UniRef100_Q062S3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q062S3_9SYNE
Length = 332
Score = 127 bits (319), Expect = 7e-28
Identities = 56/132 (42%), Positives = 95/132 (71%), Gaps = 1/132 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+ L + H A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G
Sbjct: 87 LKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRG 146
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
++ STY YWWIRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TP++ +A
Sbjct: 147 YKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELA 206
Query: 359 ESLNMSQKKVRN 394
+ +++ + +V++
Sbjct: 207 QFVDLPEDEVKD 218
[147][TOP]
>UniRef100_P96034 Sigma factor n=1 Tax=Synechococcus sp. RepID=P96034_SYNSP
Length = 317
Score = 127 bits (319), Expect = 7e-28
Identities = 60/134 (44%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YWW
Sbjct: 83 AKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + SRT+RLP H+ E+L I+ A+ +L Q G + SI +A+ L ++ K+V
Sbjct: 143 IRQAITRAIAEQSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASIPELADELGLTTKQV 202
Query: 389 RNATEAVSKVFSLD 430
R+ E + SLD
Sbjct: 203 RDYLEKSRQPLSLD 216
[148][TOP]
>UniRef100_C5NX65 RNA polymerase sigma factor n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NX65_9BACL
Length = 361
Score = 127 bits (319), Expect = 7e-28
Identities = 73/191 (38%), Positives = 118/191 (61%), Gaps = 2/191 (1%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++ LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD SKGF+ STY WW
Sbjct: 124 AKKDLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYSKGFKFSTYATWW 183
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR + LQ+ G P + IA+ +NM+ +KV
Sbjct: 184 IRQAITRAIADQARTIRIPVHMVETINRLIRIQRQLLQDLGREPKPEEIAKKMNMTPEKV 243
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETH-HSYIADTRLENNPWHGYDDLALKEEVSKLI 565
R + + SL+ G ++H +I D ++ H ++L LKE++ +++
Sbjct: 244 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDKEAQSPVEHAANEL-LKEQLEEIL 297
Query: 566 SATLGEREKEI 598
TL +RE+ +
Sbjct: 298 E-TLTDREENV 307
[149][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 127 bits (319), Expect = 7e-28
Identities = 74/196 (37%), Positives = 113/196 (57%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
LM A+ K+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ S
Sbjct: 218 LMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 277
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAES+
Sbjct: 278 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 337
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
M+ +K+R ++ SL+ + G+ + I NP L+E+
Sbjct: 338 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADI------ENPEQDVAKNLLRED 391
Query: 551 VSKLISATLGEREKEI 598
+ ++ ATL RE+++
Sbjct: 392 LEGVL-ATLSPRERDV 406
[150][TOP]
>UniRef100_Q7NP54 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NP54_GLOVI
Length = 356
Score = 127 bits (318), Expect = 9e-28
Identities = 68/190 (35%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ KL +N+RLV+SIA++Y N G DL+Q G +GL+R EKF+ +G++ STY YWW
Sbjct: 117 AKRKLVQANLRLVVSIAKKYLNRGVPFLDLIQEGSMGLIRAAEKFEHERGYKFSTYAYWW 176
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ +RT+RLP HL E++ ++ + L QE G TPS +AE+L ++++ +
Sbjct: 177 IRQAITRAVASQARTVRLPVHLVEKINRVKKVRRTLAQELGRTPSQGELAEALELAEEDL 236
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
+ A + SL+ G +T ++ + + P D +++ EVS L+
Sbjct: 237 EHILRAARRTVSLNITV-----GKEEDTELIHLIEDSQTDQPDVHIDRESMRVEVSDLLD 291
Query: 569 ATLGEREKEI 598
L RE++I
Sbjct: 292 RHLTPRERDI 301
[151][TOP]
>UniRef100_Q31BV7 Putative type II alternative sigma factor, sigma70 family n=1
Tax=Prochlorococcus marinus str. MIT 9312
RepID=Q31BV7_PROM9
Length = 307
Score = 127 bits (318), Expect = 9e-28
Identities = 71/194 (36%), Positives = 117/194 (60%), Gaps = 11/194 (5%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ ++ +N+RLV+++A+RY G E+ DL+Q G +GL R +EK+D S+G R STY YWW
Sbjct: 65 AKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYWW 124
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RAL SRT+R+P +++E+L +R+AK +L Q KGITP+ D +AE L ++++++
Sbjct: 125 IRQGLNRALSTQSRTIRIPVNINEKLTKLRSAKSKLMQLKGITPNSDELAEELKITKEEI 184
Query: 389 --------RNATEAVSKVFSLDRDAFPSLNGLPG-ETHHSYIAD-TRLENNPWHGYDDLA 538
R+ T ++ D ++ LP +T +A+ + W D
Sbjct: 185 DELLSCELRSITVSLQGTVKSKSDPSELVDILPSDQTPPMELAELAERTASAWKLLDKAN 244
Query: 539 LKEEVSKLISATLG 580
L E+ K++S G
Sbjct: 245 LTEKERKIVSLRFG 258
[152][TOP]
>UniRef100_Q02AB6 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus
Ellin6076 RepID=Q02AB6_SOLUE
Length = 563
Score = 127 bits (318), Expect = 9e-28
Identities = 69/197 (35%), Positives = 117/197 (59%), Gaps = 4/197 (2%)
Frame = +2
Query: 20 ECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTY 199
E A+++L +N+RLV+SIA+RY N G + DL+Q G IGL++ ++KF+ +G++ STY
Sbjct: 316 EAETAKKELIEANLRLVVSIAKRYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 375
Query: 200 VYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMS 376
WW+RQ ++RA+ D +RT+R+P H+ E + LIR ++ +QE G PS + +A+ L +
Sbjct: 376 ATWWVRQAITRAIADQARTIRIPVHMIETINKLIRTSRQMVQELGREPSNEELAKRLQLP 435
Query: 377 QKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKE 547
KVR + SL+ GE S++ D ++ N P +L L+E
Sbjct: 436 VSKVRKVLRVAQEPISLETPI--------GEEEESHLGDFIVDQNGISPSDAVINLNLRE 487
Query: 548 EVSKLISATLGEREKEI 598
+ ++++ TL RE++I
Sbjct: 488 QTAQVLK-TLTPREEKI 503
[153][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 127 bits (318), Expect = 9e-28
Identities = 69/190 (36%), Positives = 118/190 (62%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
ARE L +N+RLV+S+A++Y G + DL+Q G +GL+R +EKF+ +KGF+ STY WW
Sbjct: 163 AREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGLIRAVEKFNYTKGFKFSTYATWW 222
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + ++R A+ QE G PS + +A++L+++ +KV
Sbjct: 223 IRQAITRAIADQARTIRIPVHMVETINRMMRTARRLTQENGREPSDEELAQALDLTVEKV 282
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R+ + + SL+ + G+ ++ D +LE P L+E+V++++
Sbjct: 283 RSIRKTSMEPVSLETPVGQEEDSQLGD----FLPDEKLE-APSDAASHQMLREQVAQVLD 337
Query: 569 ATLGEREKEI 598
L EREK +
Sbjct: 338 -QLTEREKRV 346
[154][TOP]
>UniRef100_A9B077 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B077_HERA2
Length = 386
Score = 127 bits (318), Expect = 9e-28
Identities = 73/190 (38%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR+ L +N+RLV+SIA++Y + G M DLVQ G IGL+R +EKFD +KG + STY WW
Sbjct: 149 ARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATWW 208
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQE-KGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP H+ E + ++ +LQ+ P+ + IAE++ ++ KV
Sbjct: 209 IRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIAEAMGITASKV 268
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R EA SL+ G G+ +I D R+ + P L+E++ +++
Sbjct: 269 RRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRV-STPVDAAAMTMLREQIEEVLQ 323
Query: 569 ATLGEREKEI 598
L ERE++I
Sbjct: 324 -KLPERERKI 332
[155][TOP]
>UniRef100_A5UPS4 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UPS4_ROSS1
Length = 402
Score = 127 bits (318), Expect = 9e-28
Identities = 73/190 (38%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR+ L +N+RLV+SIA++Y + G M DLVQ G IGL+R +EKFD +KG + STY WW
Sbjct: 165 ARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATWW 224
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQE-KGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP H+ E + ++ +LQ+ P+ + IA+++ +S KV
Sbjct: 225 IRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADAMGISSTKV 284
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R EA SL+ G G+ +I D R+ + P L+E++ +++
Sbjct: 285 RRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRI-STPAEAAAASMLREQLEEVLQ 339
Query: 569 ATLGEREKEI 598
L ERE++I
Sbjct: 340 -KLPERERKI 348
[156][TOP]
>UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583
RepID=C9L8C6_RUMHA
Length = 330
Score = 127 bits (318), Expect = 9e-28
Identities = 74/193 (38%), Positives = 117/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KG++ STY WW
Sbjct: 93 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 152
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G P + IAE +NMS ++V
Sbjct: 153 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAEEMNMSVERV 212
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 213 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVE 264
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 265 VL-GTLTEREQKV 276
[157][TOP]
>UniRef100_C3XP94 RNA polymerase sigma factor (Fragment) n=1 Tax=Helicobacter
winghamensis ATCC BAA-430 RepID=C3XP94_9HELI
Length = 615
Score = 127 bits (318), Expect = 9e-28
Identities = 75/193 (38%), Positives = 111/193 (57%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+A SN+RLV+SIA+RY N G DL+Q G IGL++ ++KF+ KG+R STY WW
Sbjct: 379 AKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYRFSTYATWW 438
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLR-LQEKGITPSIDRIAESLNMSQKKV 388
IRQ +SRA+ D +RT+R+P H+ E + I + LQE+G P +++IAE + + KV
Sbjct: 439 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKCLQEEGKEPDLEKIAEEVGLPLDKV 498
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
+N + + SL+ P NG G+ +E+ G D LKE++ I
Sbjct: 499 KNVIKITKEPISLEA---PIGNGEDGK------FGDFVEDKSAVGPMDHILKEDLKSQID 549
Query: 569 AT---LGEREKEI 598
L EREK +
Sbjct: 550 DVLDQLNEREKAV 562
[158][TOP]
>UniRef100_C0BBA6 RNA polymerase sigma factor n=1 Tax=Coprococcus comes ATCC 27758
RepID=C0BBA6_9FIRM
Length = 371
Score = 127 bits (318), Expect = 9e-28
Identities = 74/193 (38%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KGF+ STY WW
Sbjct: 134 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYQKGFKFSTYATWW 193
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G P+ + IA L+M +V
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVDRV 253
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 254 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDE 305
Query: 560 LISATLGEREKEI 598
++S TL ERE+++
Sbjct: 306 VLS-TLTEREQKV 317
[159][TOP]
>UniRef100_Q6MEU8 RNA polymerase sigma factor n=1 Tax=Candidatus Protochlamydia
amoebophila UWE25 RepID=Q6MEU8_PARUW
Length = 554
Score = 126 bits (317), Expect = 1e-27
Identities = 67/200 (33%), Positives = 118/200 (59%), Gaps = 1/200 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ W+ + A+ ++ SN+RLV+SIA++Y N G DL+Q G +GL++ +EKF+ +G
Sbjct: 302 LQRWMDKSQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 361
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIA 358
++ STY WWIRQ V+RA+ D +RT+R+P H+ E + ++R AK + E G PS + +A
Sbjct: 362 YKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGREPSPEELA 421
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 538
+ L ++ ++VR + SL + G GE+ + ++P
Sbjct: 422 KELGITAERVREIYKIAQHPISLQAEV-----GDGGESQFGDFLEDTGADSPAEATGYSI 476
Query: 539 LKEEVSKLISATLGEREKEI 598
LK+++ +++S TL +RE+++
Sbjct: 477 LKDKMGEVLS-TLSDRERKV 495
[160][TOP]
>UniRef100_Q0I680 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I680_SYNS3
Length = 376
Score = 126 bits (317), Expect = 1e-27
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 5/163 (3%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ L AR+++ +N+RLV+++A++Y + G E+ DLVQ G +GL R +EKFDS++G
Sbjct: 126 LQLRLRRGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERAVEKFDSTRG 185
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
FR STY YWWIRQG++RA+ SRT+RLP H+ E+L I+ + + +G T S+ +A
Sbjct: 186 FRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASNEGRTASMTDLA 245
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD----RDAFPSLNGLPGETH 475
L++S+ VR V + SL+ RD L L + H
Sbjct: 246 RELSVSEDTVRQTLARVPRSVSLETKVGRDQDTQLGELLEDEH 288
[161][TOP]
>UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656
RepID=C4ZEX0_EUBR3
Length = 434
Score = 126 bits (317), Expect = 1e-27
Identities = 73/193 (37%), Positives = 117/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KG++ STY WW
Sbjct: 197 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYKKGYKFSTYATWW 256
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G PS + IA+ +NM ++V
Sbjct: 257 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAKEMNMPVERV 316
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 317 REILKISQEPVSLETPI--------GEEEDSHLGDFIKDDNVPVPADAAAFTLLKEQLEE 368
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 369 VL-GTLTEREQKV 380
[162][TOP]
>UniRef100_A9KRZ0 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KRZ0_CLOPH
Length = 371
Score = 126 bits (317), Expect = 1e-27
Identities = 73/196 (37%), Positives = 121/196 (61%), Gaps = 5/196 (2%)
Frame = +2
Query: 26 HLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVY 205
++A++ LA SN+RLV+SIA+RY G DL+Q G +GL++ ++KFD +KG++ STY
Sbjct: 131 NMAKQILAESNLRLVVSIAKRYVGRGLSFLDLIQEGNLGLIKAVDKFDYNKGYKFSTYAT 190
Query: 206 WWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQK 382
WWIRQ ++R++ D SRT+R+P H+ E + R ++ LQE G PS +A+++N+ +
Sbjct: 191 WWIRQAITRSIADQSRTIRIPVHMSEVINKTYRVSRNLLQELGREPSEQELADAMNLPIE 250
Query: 383 KVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEE 550
KVR + + SLD GE S++ D ++++ G +D A L+++
Sbjct: 251 KVREILKVSADPISLDTPI--------GEEDDSHLGDF-IKDDTIMGPEDAASYAVLQDQ 301
Query: 551 VSKLISATLGEREKEI 598
+SKL+ TL ERE+ +
Sbjct: 302 ISKLLD-TLTEREQRV 316
[163][TOP]
>UniRef100_P94906 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa
RepID=P94906_MICAE
Length = 376
Score = 126 bits (317), Expect = 1e-27
Identities = 68/192 (35%), Positives = 118/192 (61%), Gaps = 3/192 (1%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +KG++ STY YWW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWW 198
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVR 391
IRQ ++R + +++RT+RLP H+ E+L ++ A++ Q+ P+ +AE L ++ +++R
Sbjct: 199 IRQAITRTIANDARTIRLPIHIVEKLNKLKKAQILKQDLQRNPNERELAERLEITPEQLR 258
Query: 392 NATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSKL 562
++ L R + SLN G+ + + D +++ P +++ +++E+ +
Sbjct: 259 -------QLLQLRRQSL-SLNHRVGKGEDTELVDLLEDDDLQLPEDKMNEMMMRQEIFAV 310
Query: 563 ISATLGEREKEI 598
+S L EREK++
Sbjct: 311 LSDVLTEREKDV 322
[164][TOP]
>UniRef100_C5EYF0 RNA polymerase sigma factor n=1 Tax=Helicobacter pullorum MIT
98-5489 RepID=C5EYF0_9HELI
Length = 615
Score = 126 bits (317), Expect = 1e-27
Identities = 75/193 (38%), Positives = 111/193 (57%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+A SN+RLV+SIA+RY N G DL+Q G IGL++ ++KF+ KG++ STY WW
Sbjct: 376 AKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWW 435
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLR-LQEKGITPSIDRIAESLNMSQKKV 388
IRQ +SRA+ D +RT+R+P H+ E + I + LQE+G P I++IAE + + KV
Sbjct: 436 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQEEGKEPDIEKIAEEVGLPVDKV 495
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
+N + + SL+ P NG G+ +E+ G D LKE++ I
Sbjct: 496 KNVIKITKEPISLEA---PIGNGEDGK------FGDFVEDKASLGPMDSILKEDLKAQID 546
Query: 569 AT---LGEREKEI 598
L EREK +
Sbjct: 547 DVLDQLNEREKAV 559
[165][TOP]
>UniRef100_B1X4M1 Type II alternative RNA polymerase sigma factor, sigma-70 family
protein n=1 Tax=Paulinella chromatophora
RepID=B1X4M1_PAUCH
Length = 321
Score = 126 bits (317), Expect = 1e-27
Identities = 66/152 (43%), Positives = 102/152 (67%), Gaps = 6/152 (3%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ SN+RLV+SIA++Y E+ DLVQ G IGL+RG+EKFD ++G++ STY YWW
Sbjct: 87 AKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQEGTIGLIRGVEKFDPTRGYKFSTYAYWW 146
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H+ E L ++ A+ L Q G TP++ +A+ + +++K+V
Sbjct: 147 IRQGITRAISEQSRTIRLPIHITEELNKLKKAQRDLSQSLGRTPTVIELAKMIKLTEKEV 206
Query: 389 R----NATEAVSKVFSL-DRDAFPSLNGLPGE 469
+ +A + VS + D D L LP E
Sbjct: 207 KELLCHAKQPVSLEMKIGDGDDTVLLELLPSE 238
[166][TOP]
>UniRef100_UPI0001742EF6 RNA polymerase sigma factor RpoD n=1 Tax=candidate division TM7
single-cell isolate TM7a RepID=UPI0001742EF6
Length = 323
Score = 126 bits (316), Expect = 2e-27
Identities = 70/193 (36%), Positives = 111/193 (57%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++K+A +N+RLV+SIA+RY G + DL+Q G GLLR +EKFD KGF+ STY WW
Sbjct: 83 AKDKMAEANMRLVVSIAKRYSGRGLDFLDLIQEGNTGLLRAVEKFDPDKGFKFSTYATWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +R +R+P H+ E + L+R + QE P+I+ +++ L+M K+
Sbjct: 143 IRQAITRAIADQARVIRIPVHMVETINKLLRTQRRMTQELNREPTIEELSKELDMEPDKI 202
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
+ + SLD G G+ S + D + + P LKE+V
Sbjct: 203 EYVMKIKQDIHSLDAGV-----GRDGDEEDSVLGDFIEDEDTATPEESASSQLLKEQVQG 257
Query: 560 LISATLGEREKEI 598
++S +L +RE++I
Sbjct: 258 ILS-SLSDREQKI 269
[167][TOP]
>UniRef100_Q7V934 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V934_PROMM
Length = 335
Score = 126 bits (316), Expect = 2e-27
Identities = 56/134 (41%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G++ STY YWW
Sbjct: 100 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TP++ +AE + + +++V
Sbjct: 160 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 219
Query: 389 RNATEAVSKVFSLD 430
++ + SL+
Sbjct: 220 KDLMCRARQPMSLE 233
[168][TOP]
>UniRef100_Q7V6S8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V6S8_PROMM
Length = 320
Score = 126 bits (316), Expect = 2e-27
Identities = 56/134 (41%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G++ STY YWW
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 144
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TP++ +AE + + +++V
Sbjct: 145 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 204
Query: 389 RNATEAVSKVFSLD 430
++ + SL+
Sbjct: 205 KDLMCRARQPMSLE 218
[169][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 126 bits (316), Expect = 2e-27
Identities = 62/134 (46%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 150 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 209
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + KL QE G P+ + IA S+ M+ +K+
Sbjct: 210 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATSMEMTIEKL 269
Query: 389 RNATEAVSKVFSLD 430
R ++ SL+
Sbjct: 270 RFIAKSAQLPISLE 283
[170][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
RepID=C4Z4Y6_EUBE2
Length = 434
Score = 126 bits (316), Expect = 2e-27
Identities = 71/193 (36%), Positives = 118/193 (61%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ +EK+D KGF+ STY WW
Sbjct: 197 AKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKYDYRKGFKFSTYATWW 256
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G PS + IAE++++ ++V
Sbjct: 257 IRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQELGREPSPEEIAENMDIPVERV 316
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 317 REIQKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPAEAAASTLLKEQLVE 368
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 369 VL-GTLTEREQKV 380
[171][TOP]
>UniRef100_B8HR54 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 7425 RepID=B8HR54_CYAP4
Length = 318
Score = 126 bits (316), Expect = 2e-27
Identities = 61/144 (42%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ + LA+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG
Sbjct: 73 LQGVVNRGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKG 132
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
+R STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ A+ +L Q+ G +I +A
Sbjct: 133 YRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATIGELA 192
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
+ L ++ K+VR E + SLD
Sbjct: 193 QELELTPKQVREYLERSRQPLSLD 216
[172][TOP]
>UniRef100_B2J979 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2J979_NOSP7
Length = 332
Score = 126 bits (316), Expect = 2e-27
Identities = 58/135 (42%), Positives = 92/135 (68%), Gaps = 1/135 (0%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YW
Sbjct: 96 IAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYW 155
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIAESLNMSQKK 385
WIRQ ++RA+ + +RT+RLP H+ E+L I+ A+ +L +K G P+ +A+ L ++ K+
Sbjct: 156 WIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELAQELELTPKQ 215
Query: 386 VRNATEAVSKVFSLD 430
VR E SLD
Sbjct: 216 VREYLEKARLPLSLD 230
[173][TOP]
>UniRef100_A2C8C3 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C8C3_PROM3
Length = 320
Score = 126 bits (316), Expect = 2e-27
Identities = 56/134 (41%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G++ STY YWW
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 144
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TP++ +AE + + +++V
Sbjct: 145 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 204
Query: 389 RNATEAVSKVFSLD 430
++ + SL+
Sbjct: 205 KDLMCRARQPMSLE 218
[174][TOP]
>UniRef100_A2C609 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C609_PROM3
Length = 350
Score = 126 bits (316), Expect = 2e-27
Identities = 56/134 (41%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G++ STY YWW
Sbjct: 115 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 174
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TP++ +AE + + +++V
Sbjct: 175 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 234
Query: 389 RNATEAVSKVFSLD 430
++ + SL+
Sbjct: 235 KDLMCRARQPMSLE 248
[175][TOP]
>UniRef100_C7N4Z8 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family n=1 Tax=Slackia
heliotrinireducens DSM 20476 RepID=C7N4Z8_SLAHD
Length = 394
Score = 126 bits (316), Expect = 2e-27
Identities = 72/193 (37%), Positives = 115/193 (59%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++L +N+RLV+SIA+RY G DL+Q G +GL+R +EKFD +KGF+ STY WW
Sbjct: 156 AKDQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWW 215
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R + LQE G PS + I E + +S ++V
Sbjct: 216 IRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGRDPSPEEIGEKMGLSAERV 275
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S + D +++ P ++E++SK
Sbjct: 276 REIQKLSQEPVSLETPI--------GEEEDSQLGDFIEDDSAIVPVDAASFAMMQEQLSK 327
Query: 560 LISATLGEREKEI 598
++ TLGERE+ +
Sbjct: 328 VLD-TLGERERNV 339
[176][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 126 bits (316), Expect = 2e-27
Identities = 71/188 (37%), Positives = 111/188 (59%), Gaps = 1/188 (0%)
Frame = +2
Query: 38 EKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIR 217
+K+ N+RLV+S+A+ Y N G + DL+Q G +GL+R EKFD S+GF+ STY YWWIR
Sbjct: 259 DKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIR 318
Query: 218 QGVSRALVDNSRTLRLPTHLHERLGLIRNA-KLRLQEKGITPSIDRIAESLNMSQKKVRN 394
Q +++AL + SRT+RLP H+ E + IR A +L QE P+ + +AE +S ++R+
Sbjct: 319 QSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRH 378
Query: 395 ATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISAT 574
T SLDR ++ E +ADT E+ +L K+++ +++ T
Sbjct: 379 VTRCSRVPTSLDRCVGKDMD----EKFSEIVADTNSESTETIVSKEL-FKKDLDRVLD-T 432
Query: 575 LGEREKEI 598
L REK++
Sbjct: 433 LTAREKQV 440
[177][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 126 bits (316), Expect = 2e-27
Identities = 71/188 (37%), Positives = 111/188 (59%), Gaps = 1/188 (0%)
Frame = +2
Query: 38 EKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIR 217
+K+ N+RLV+S+A+ Y N G + DL+Q G +GL+R EKFD S+GF+ STY YWWIR
Sbjct: 356 DKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIR 415
Query: 218 QGVSRALVDNSRTLRLPTHLHERLGLIRNA-KLRLQEKGITPSIDRIAESLNMSQKKVRN 394
Q +++AL + SRT+RLP H+ E + IR A +L QE P+ + +AE +S ++R+
Sbjct: 416 QSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRH 475
Query: 395 ATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISAT 574
T SLDR ++ E +ADT E+ +L K+++ +++ T
Sbjct: 476 VTRCSRVPTSLDRCVGKDMD----EKFSEIVADTNSESTETIVSKEL-FKKDLDRVLD-T 529
Query: 575 LGEREKEI 598
L REK++
Sbjct: 530 LTAREKQV 537
[178][TOP]
>UniRef100_B9L102 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L102_THERP
Length = 509
Score = 125 bits (315), Expect = 2e-27
Identities = 75/193 (38%), Positives = 110/193 (56%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR KL +N+RLV+SIA+RY G + DL+Q G +GL+R ++KF + KGF+ STY WW
Sbjct: 272 ARRKLTEANLRLVVSIAKRYTGRGLTLLDLIQEGNLGLMRAVDKFQTHKGFKFSTYATWW 331
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RAL D++RT+RLP HL E L + R A+ QE G P+ +A ++NM ++
Sbjct: 332 IRQAITRALADHARTIRLPVHLVETLNRVSRVARQLTQELGREPTTSELAAAVNMPLDRL 391
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA---LKEEVSK 559
R +A SL+ G+ S + D + D A L+E+V
Sbjct: 392 RELLQAAQDPVSLEAPV--------GQEEESTLGDFLEDERAVAPLDAAALSLLREQVQS 443
Query: 560 LISATLGEREKEI 598
L+ ATL ERE+ +
Sbjct: 444 LL-ATLTERERRV 455
[179][TOP]
>UniRef100_B8G6G0 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
RepID=B8G6G0_CHLAD
Length = 381
Score = 125 bits (315), Expect = 2e-27
Identities = 74/190 (38%), Positives = 111/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR L +N+RLV+SIA++Y + G M DLVQ G IGL+R +EKFD KG + STY WW
Sbjct: 144 ARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYKKGHKFSTYATWW 203
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQE-KGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP H+ E + ++ RLQ+ P+ + IA+++ +S KV
Sbjct: 204 IRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHRLQQTMQREPTPEEIADAMGISAGKV 263
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R EA SL+ G G+ +I D R+ + P L+E++ +++
Sbjct: 264 RRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRI-STPAEAAAASLLREQLEEVL- 317
Query: 569 ATLGEREKEI 598
L ERE++I
Sbjct: 318 MKLPERERKI 327
[180][TOP]
>UniRef100_B0CFS6 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0CFS6_ACAM1
Length = 318
Score = 125 bits (315), Expect = 2e-27
Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ L H A K+ SN+RLV+SIA++Y+ E DL+Q G IGL RG+EKFD KG
Sbjct: 73 LQKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKG 132
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIA 358
+R STY YWWIRQ ++RA+ + RT+RLP H++E+L +R + +L +K P++ +A
Sbjct: 133 YRFSTYAYWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELA 192
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
++++ KK+ + + SLD
Sbjct: 193 VEMDLAPKKIEDYLNYARRSISLD 216
[181][TOP]
>UniRef100_B0BZB6 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0BZB6_ACAM1
Length = 318
Score = 125 bits (315), Expect = 2e-27
Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ L H A K+ SN+RLV+SIA++Y+ E DL+Q G IGL RG+EKFD KG
Sbjct: 73 LQKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKG 132
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIA 358
+R STY YWWIRQ ++RA+ + RT+RLP H++E+L +R + +L +K P++ +A
Sbjct: 133 YRFSTYAYWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELA 192
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
++++ KK+ + + SLD
Sbjct: 193 VEMDLAPKKIEDYLNYARRSISLD 216
[182][TOP]
>UniRef100_A9WGV1 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WGV1_CHLAA
Length = 381
Score = 125 bits (315), Expect = 2e-27
Identities = 74/190 (38%), Positives = 111/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR L +N+RLV+SIA++Y + G M DLVQ G IGL+R +EKFD KG + STY WW
Sbjct: 144 ARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYKKGHKFSTYATWW 203
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQE-KGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP H+ E + ++ RLQ+ P+ + IA+++ +S KV
Sbjct: 204 IRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHRLQQTMQREPTPEEIADAMGISAGKV 263
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R EA SL+ G G+ +I D R+ + P L+E++ +++
Sbjct: 264 RRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRI-STPAEAAAASLLREQLEEVL- 317
Query: 569 ATLGEREKEI 598
L ERE++I
Sbjct: 318 MKLPERERKI 327
[183][TOP]
>UniRef100_C7Q582 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Catenulispora acidiphila DSM 44928
RepID=C7Q582_CATAD
Length = 390
Score = 125 bits (315), Expect = 2e-27
Identities = 79/199 (39%), Positives = 119/199 (59%), Gaps = 4/199 (2%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
++E A+ +L +N+RLV+SIA+RY G + DLVQ G +GL+R +EKFD ++G++ S
Sbjct: 147 VLEGQAAKRRLIEANLRLVVSIAKRYLGRGMSILDLVQEGNLGLIRAVEKFDYTRGYKFS 206
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ +SRAL D +RT+R+P H+ E + ++R + LQE G+ P+ D IAE L
Sbjct: 207 TYATWWIRQAMSRALADQARTIRVPVHVVELMNRVVRLQRRLLQENGVEPTPDDIAEVLG 266
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA---L 541
+ A E V +V L ++ SL+ GE + D + + D +A L
Sbjct: 267 V-------AVERVVEVLRLAQEPV-SLHAPVGEEDDVALGDLIEDADAVSPADSVAVVML 318
Query: 542 KEEVSKLISATLGEREKEI 598
+E + L+S TLGEREK +
Sbjct: 319 REHLDALLS-TLGEREKRV 336
[184][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
RepID=C0C397_9CLOT
Length = 370
Score = 125 bits (315), Expect = 2e-27
Identities = 73/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KGF+ STY WW
Sbjct: 133 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYATWW 192
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G P+ + IA L+M ++V
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVERV 252
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 253 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDE 304
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 305 VLD-TLTEREQKV 316
[185][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
RepID=B0NBC7_EUBSP
Length = 371
Score = 125 bits (315), Expect = 2e-27
Identities = 73/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KGF+ STY WW
Sbjct: 134 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYATWW 193
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G P+ + IA L+M ++V
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAQLDMPVERV 253
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 254 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDE 305
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 306 VLD-TLTEREQKV 317
[186][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 125 bits (315), Expect = 2e-27
Identities = 73/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KGF+ STY WW
Sbjct: 145 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYATWW 204
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G P+ + IA L+M ++V
Sbjct: 205 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVERV 264
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 265 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDE 316
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 317 VLD-TLTEREQKV 328
[187][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
RepID=A6BEL2_9FIRM
Length = 369
Score = 125 bits (315), Expect = 2e-27
Identities = 73/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KGF+ STY WW
Sbjct: 132 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYATWW 191
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G P+ + IA L+M ++V
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVERV 251
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 252 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDE 303
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 304 VLD-TLTEREQKV 315
[188][TOP]
>UniRef100_A3IVN8 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IVN8_9CHRO
Length = 297
Score = 125 bits (315), Expect = 2e-27
Identities = 61/132 (46%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR+K+ +N+RLV+SIA++Y N G + DL+Q G +GL+RG+EKFD S+G++ STY YWW
Sbjct: 61 ARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFSTYAYWW 120
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H++E L R + L K G P+ IAE+++++ K+
Sbjct: 121 IRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAENMDITVDKL 180
Query: 389 RNATEAVSKVFS 424
R +A K S
Sbjct: 181 RFLQQAAFKTKS 192
[189][TOP]
>UniRef100_A0ZFS4 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZFS4_NODSP
Length = 332
Score = 125 bits (315), Expect = 2e-27
Identities = 59/134 (44%), Positives = 92/134 (68%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YWW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + +RT+RLP H+ E+L I+ A+ +L Q+ G PS +A+ L+++ K+V
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPSAAELAQELDLTPKQV 216
Query: 389 RNATEAVSKVFSLD 430
R E SLD
Sbjct: 217 REYLERARLPLSLD 230
[190][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 125 bits (314), Expect = 3e-27
Identities = 61/134 (45%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 182 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 241
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + KL QE G P+ + IA+ + M+ +K+
Sbjct: 242 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEKL 301
Query: 389 RNATEAVSKVFSLD 430
R ++ SL+
Sbjct: 302 RFIAKSAQLPISLE 315
[191][TOP]
>UniRef100_Q39YN6 RNA polymerase sigma factor n=1 Tax=Geobacter metallireducens GS-15
RepID=Q39YN6_GEOMG
Length = 579
Score = 125 bits (314), Expect = 3e-27
Identities = 70/194 (36%), Positives = 115/194 (59%), Gaps = 4/194 (2%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
LA+ +L +N+RLV+SIA++Y N G + DL+Q G IGL++ ++KF+ +G++ STY W
Sbjct: 341 LAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATW 400
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKK 385
WIRQ ++RA+ D +RT+R+P H+ E + LIR ++ +QE G PS + IAE +N+ K
Sbjct: 401 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDK 460
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN---NPWHGYDDLALKEEVS 556
VR + + SL+ GE S++ D + +P L E+ S
Sbjct: 461 VRKVLKIAKEPISLETPI--------GEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTS 512
Query: 557 KLISATLGEREKEI 598
+++S TL RE+++
Sbjct: 513 RVLS-TLTPREEKV 525
[192][TOP]
>UniRef100_A9NGS4 RNA polymerase sigma factor n=1 Tax=Acholeplasma laidlawii PG-8A
RepID=A9NGS4_ACHLI
Length = 419
Score = 125 bits (314), Expect = 3e-27
Identities = 72/203 (35%), Positives = 119/203 (58%), Gaps = 4/203 (1%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+ + + H A+EKL +N RLV+SIA++Y G DL+Q G +GL+R ++KFD KG
Sbjct: 169 LEDTIRKGHYAKEKLVEANYRLVVSIAKKYTQRGLLFLDLIQEGNMGLMRAVDKFDYEKG 228
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIA 358
F+ STY WWIRQ ++RA+ D +RT+R+P H+ E + +IR + +QE G +I+ IA
Sbjct: 229 FKFSTYATWWIRQAITRAVADQARTIRIPVHMVETINKMIRIQRQLVQELGRDATIEEIA 288
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 538
E ++++ +KV+N + SL+ GE S + D + N + +D +
Sbjct: 289 EKMDITPEKVQNIQRIAKEPISLEAPV--------GEEEDSSLGDFISDPNALNPHDYM- 339
Query: 539 LKEEVSKLIS---ATLGEREKEI 598
++E V K + TL +RE+++
Sbjct: 340 MQEMVKKTLDEVLETLTDREEKV 362
[193][TOP]
>UniRef100_A6Q2X9 RNA polymerase sigma factor n=1 Tax=Nitratiruptor sp. SB155-2
RepID=A6Q2X9_NITSB
Length = 608
Score = 125 bits (314), Expect = 3e-27
Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ ++A SN+RLV+SIA+RY N G DL+Q G IGL++ ++KF+ KG++ STY WW
Sbjct: 369 AKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWW 428
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRN-AKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ +SRA+ D +RT+R+P H+ E + I + LQE G P ++ IAE + M +KV
Sbjct: 429 IRQAISRAIADQARTIRIPIHMIETINRINKIVRKHLQETGKEPDVETIAEEVGMPVEKV 488
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
+N + + SL+ +G G+ +I D NP +K ++ +++
Sbjct: 489 KNVIKITKEPVSLEAPIGNEEDGKFGD----FIEDKNAP-NPLEVIMKEDMKSKIEEILE 543
Query: 569 ATLGEREKEI 598
L EREK +
Sbjct: 544 -NLNEREKAV 552
[194][TOP]
>UniRef100_A3PBV1 Putative type II alternative sigma factor, sigma70 family n=1
Tax=Prochlorococcus marinus str. MIT 9301
RepID=A3PBV1_PROM0
Length = 307
Score = 125 bits (314), Expect = 3e-27
Identities = 70/194 (36%), Positives = 116/194 (59%), Gaps = 11/194 (5%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ ++ +N+RLV+++A+RY G E+ DL+Q G +GL R +EK+D S+G R STY YWW
Sbjct: 65 AKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYWW 124
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RAL SRT+R+P +++E+L +R+AK +L Q KGI PS D +AE + ++++++
Sbjct: 125 IRQGLNRALSTQSRTIRIPVNINEKLTKLRSAKSKLMQLKGIPPSTDELAEEMKITKEEI 184
Query: 389 --------RNATEAVSKVFSLDRDAFPSLNGLPG-ETHHSYIAD-TRLENNPWHGYDDLA 538
R+ T ++ D ++ LP +T +A+ + W D
Sbjct: 185 DELLSCELRSITVSLQGTVKSKSDPSELVDILPSDQTPPMELAELAERTASAWKLLDKAN 244
Query: 539 LKEEVSKLISATLG 580
L E+ K++S G
Sbjct: 245 LTEKERKIVSLRFG 258
[195][TOP]
>UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM
16841 RepID=C0FXF0_9FIRM
Length = 426
Score = 125 bits (314), Expect = 3e-27
Identities = 73/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KG++ STY WW
Sbjct: 189 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 248
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G PS + IA +NM ++V
Sbjct: 249 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAAEMNMPVERV 308
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 309 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLEE 360
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 361 VL-GTLTEREQKV 372
[196][TOP]
>UniRef100_C0FDC5 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1
RepID=C0FDC5_9CLOT
Length = 377
Score = 125 bits (314), Expect = 3e-27
Identities = 71/193 (36%), Positives = 113/193 (58%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E+L +N+RLV+SIA+RY G DLVQ G +GL++G+EKFD +KG+++STY WW
Sbjct: 141 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 200
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQKKV 388
IRQ V+RAL D +RT+R+P H+ E + + + +L E G PS+ ++ +L+MS+ KV
Sbjct: 201 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVAELSAALDMSEDKV 260
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
+ + SL+ GE S + D + N P + + L+E +
Sbjct: 261 MEIMQIAREPASLETPI--------GEEDDSNLGDFVADGNVVTPEGNVESVMLREHIDA 312
Query: 560 LISATLGEREKEI 598
L+ L ERE+++
Sbjct: 313 LL-GDLKERERQV 324
[197][TOP]
>UniRef100_B6FR93 RNA polymerase sigma factor n=1 Tax=Clostridium nexile DSM 1787
RepID=B6FR93_9CLOT
Length = 370
Score = 125 bits (314), Expect = 3e-27
Identities = 73/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KGF+ STY WW
Sbjct: 133 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYQKGFKFSTYATWW 192
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G P + IAE L+M ++V
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAEELDMPVERV 252
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 253 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPAEAAAATLLKEQLGE 304
Query: 560 LISATLGEREKEI 598
++ TL +RE+++
Sbjct: 305 VLD-TLTDREQKV 316
[198][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 125 bits (314), Expect = 3e-27
Identities = 72/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++K+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 168 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 227
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + KL QE G P+ + IA + M+ +K+
Sbjct: 228 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKL 287
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA---LKEEVSK 559
R ++ SL+ G+ S + D +E++ D+++ L+E++
Sbjct: 288 RFIAKSAQLPISLETPI--------GKEEDSRLGDF-IESDGETPEDEVSKSLLREDLES 338
Query: 560 LISATLGEREKEI 598
++S TL RE+++
Sbjct: 339 VLS-TLSPRERDV 350
[199][TOP]
>UniRef100_A0YY85 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YY85_9CYAN
Length = 331
Score = 125 bits (314), Expect = 3e-27
Identities = 73/198 (36%), Positives = 121/198 (61%), Gaps = 8/198 (4%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+A++K+ SN+RLV+SIA+RY N G DL+Q G +GL R EKFD KG++ STY YW
Sbjct: 92 IAKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYW 151
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERL----GLIRNAKLRLQEKGITPSIDRIAESLNMS 376
WIRQG++R + + RT+RLP H+ E+L G+ ++ + L+ K P+ D +AE+L++S
Sbjct: 152 WIRQGITRTIANQGRTVRLPVHVVEQLNKLQGIHQDLRRSLRRK---PTEDELAEALSIS 208
Query: 377 QKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN----NPWHGYDDLALK 544
+++R + K SLN G +S + D LE+ +P ++L ++
Sbjct: 209 PQQLRLLEQVRRKSL--------SLNHRVGSEENSELMDL-LEDYESLSPESQINELMMR 259
Query: 545 EEVSKLISATLGEREKEI 598
+E+ +++ + L ERE++I
Sbjct: 260 QELLEVLRSVLNEREQDI 277
[200][TOP]
>UniRef100_Q6MR57 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus
RepID=Q6MR57_BDEBA
Length = 609
Score = 125 bits (313), Expect = 3e-27
Identities = 66/194 (34%), Positives = 115/194 (59%), Gaps = 1/194 (0%)
Frame = +2
Query: 20 ECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTY 199
E A+ +L +N+RLV+SIA++Y N G + DL+Q G IGL++ ++KF+ +G++ STY
Sbjct: 367 EADAAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 426
Query: 200 VYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMS 376
WWIRQ ++RA+ D +RT+R+P H+ E + L+R ++ +QE G P+ + IA+ ++M
Sbjct: 427 ATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLIQELGREPTPEEIADKMDMP 486
Query: 377 QKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVS 556
KVR + + SL+ G ++H + + NP +L L E+
Sbjct: 487 VDKVRKVLKIAKEPISLETPV-----GEEEDSHLGDFIEDKKVINPAEAIVNLNLAEQTR 541
Query: 557 KLISATLGEREKEI 598
+++S TL RE+++
Sbjct: 542 RVLS-TLTPREEKV 554
[201][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 125 bits (313), Expect = 3e-27
Identities = 73/193 (37%), Positives = 115/193 (59%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++K+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 222
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + KL QE G P+ + IA + M+ +K+
Sbjct: 223 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKL 282
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA---LKEEVSK 559
R ++ SL+ G+ S + D +E + D++A L+E++
Sbjct: 283 RFIAKSAQLPISLETPI--------GKEEDSRLGDF-IEADGETPEDEVAKNLLREDLEG 333
Query: 560 LISATLGEREKEI 598
++S TL RE+++
Sbjct: 334 VLS-TLSPRERDV 345
[202][TOP]
>UniRef100_Q10XF4 RNA polymerase, sigma 28 subunit n=1 Tax=Trichodesmium erythraeum
IMS101 RepID=Q10XF4_TRIEI
Length = 319
Score = 125 bits (313), Expect = 3e-27
Identities = 60/144 (41%), Positives = 93/144 (64%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ + E A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG
Sbjct: 74 LQRIIREGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKG 133
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
+R STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ + +L Q+ G + + IA
Sbjct: 134 YRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRQLTQQLGRSATTGEIA 193
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
E L ++ K++R E SLD
Sbjct: 194 EELGLTPKQIRECLERARLPLSLD 217
[203][TOP]
>UniRef100_B8GCU9 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
RepID=B8GCU9_CHLAD
Length = 398
Score = 125 bits (313), Expect = 3e-27
Identities = 80/193 (41%), Positives = 113/193 (58%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR+K+A +N+RLV+SIA+RY + G + DL+Q G +GLLR IEKFD +KG++ STY WW
Sbjct: 159 ARQKMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWW 218
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
I+Q +SRAL D SR +RLP HL E L I++A+ +L Q G P+ +A L MS++K+
Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R SL A P GE S +AD + + DD A + + I+
Sbjct: 279 RELRRTAQDPVSL---ATP-----VGEEADSTLADFIPDPHALDA-DDAAASGMLRQQIA 329
Query: 569 AT---LGEREKEI 598
A L ERE+ +
Sbjct: 330 AALDQLSERERRV 342
[204][TOP]
>UniRef100_B2IZR4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IZR4_NOSP7
Length = 339
Score = 125 bits (313), Expect = 3e-27
Identities = 68/203 (33%), Positives = 118/203 (58%), Gaps = 4/203 (1%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L+ L + H A++K+ +N+RLV+++A++Y + E DL+Q G +GL RG++KFD + G
Sbjct: 94 LELQLSQGHQAKQKMIQANLRLVVAVAKKYQHRNLEFMDLIQEGTLGLERGVDKFDPALG 153
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
++ STY YWWIRQG++RA+ RT+RLP H+ E+L I+ + L Q+ G P+ IA
Sbjct: 154 YKFSTYAYWWIRQGITRAIAQQGRTIRLPIHVFEKLNKIKRVQRELSQQLGRVPTTAEIA 213
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 538
+L+++ +VR + FSL+ GE + + D ++ P +D A
Sbjct: 214 NALSLTPSQVRECLYLARQPFSLEARV--------GEQQDTELQDILEDDGP--SPEDYA 263
Query: 539 LKEEVSKLIS---ATLGEREKEI 598
++E + + + A L +++EI
Sbjct: 264 VEESLHQDLQDLLAKLSPQQREI 286
[205][TOP]
>UniRef100_A9B1B6 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B1B6_HERA2
Length = 375
Score = 125 bits (313), Expect = 3e-27
Identities = 74/200 (37%), Positives = 114/200 (57%), Gaps = 1/200 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ ++E AR+ L +N+RLV+SIA++Y G DL+Q G IGL+R EKFD KG
Sbjct: 127 LQQQVLESEAARQHLIQANLRLVVSIAKKYVGRGMSFLDLIQEGNIGLMRATEKFDYHKG 186
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIA 358
F+ STY WWIRQ ++R++ D+SRT+RLP H+ E + ++ +LQ+ PS + I
Sbjct: 187 FKFSTYATWWIRQAITRSISDHSRTIRLPVHVGETINRVKRTAHKLQQALEREPSAEEIG 246
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 538
E+L + KVR E + SL+ + + G+ +I D R H + L
Sbjct: 247 EALGLPADKVRRVLEVARQPVSLETPVGNEGDSVLGD----FIEDDRSSEPLDHATEHL- 301
Query: 539 LKEEVSKLISATLGEREKEI 598
L+E++ +++ L ERE+ I
Sbjct: 302 LREQLDEVL-CKLDERERRI 320
[206][TOP]
>UniRef100_A0LHK2 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans
MPOB RepID=A0LHK2_SYNFM
Length = 599
Score = 125 bits (313), Expect = 3e-27
Identities = 68/196 (34%), Positives = 115/196 (58%), Gaps = 1/196 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
L+ LA+ +L +N+RLV+SIA++Y N G + DL+Q G IGL++ ++KF+ +G++ S
Sbjct: 355 LIRAKLAKSELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFS 414
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLN 370
TY WWIRQ ++RA+ D +RT+R+P H+ E + LIR ++ +QE G P+ + IAE +
Sbjct: 415 TYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKME 474
Query: 371 MSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 550
+KVR + + SL+ G ++H + + +P +L L E+
Sbjct: 475 FPVEKVRKVLKIAKEPISLETPI-----GEEEDSHLGDFIEDKRVASPVDAVINLNLSEQ 529
Query: 551 VSKLISATLGEREKEI 598
K + ATL RE+++
Sbjct: 530 TRKAL-ATLTPREEKV 544
[207][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 125 bits (313), Expect = 3e-27
Identities = 70/193 (36%), Positives = 114/193 (59%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGF+ STY WW
Sbjct: 227 ARQELAEANLRLVVSIAKRYVGRGMHFLDLIQEGNMGLMKAVEKFDYTKGFKFSTYATWW 286
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR + +Q+ G P + I + ++ KV
Sbjct: 287 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRTLIQDLGRDPMPEEIGAEMELTADKV 346
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN---NPWHGYDDLALKEEVSK 559
R + + SL+ GE + S++ D +N +P D LK+++ +
Sbjct: 347 REIQKIAQEPVSLETPI--------GEENDSHLGDFIEDNEGESPIESTSDQMLKDQLEE 398
Query: 560 LISATLGEREKEI 598
++ TL ERE+ +
Sbjct: 399 VL-GTLTEREENV 410
[208][TOP]
>UniRef100_Q05XW0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05XW0_9SYNE
Length = 321
Score = 125 bits (313), Expect = 3e-27
Identities = 54/122 (44%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G++ STY YWW
Sbjct: 86 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 145
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TP++ +AE + + +++V
Sbjct: 146 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEEEV 205
Query: 389 RN 394
++
Sbjct: 206 KD 207
[209][TOP]
>UniRef100_Q05UJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05UJ7_9SYNE
Length = 341
Score = 125 bits (313), Expect = 3e-27
Identities = 54/122 (44%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G++ STY YWW
Sbjct: 106 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 165
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TP++ +AE + + +++V
Sbjct: 166 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEEEV 225
Query: 389 RN 394
++
Sbjct: 226 KD 227
[210][TOP]
>UniRef100_P77840 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
RepID=P77840_CHLAU
Length = 343
Score = 125 bits (313), Expect = 3e-27
Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 3/192 (1%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR L +N+RLV+SIA++Y + G M DLVQ G IGL+R +EKFD KG + STY WW
Sbjct: 106 ARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYKKGHKFSTYATWW 165
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ---EKGITPSIDRIAESLNMSQK 382
IRQ ++RA+ D SRT+RLP H+ E + ++ RLQ ++ TP + IA+++ +S
Sbjct: 166 IRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHRLQQTMQRDATP--EEIADAMGISAG 223
Query: 383 KVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKL 562
KVR EA SL+ G G+ +I D R+ + P L+E++ ++
Sbjct: 224 KVRRTLEASMHPLSLEMPVGQEGEGRMGD----FIEDDRI-STPAEAPAASLLREQLEEV 278
Query: 563 ISATLGEREKEI 598
+ L ERE++I
Sbjct: 279 L-MKLPERERKI 289
[211][TOP]
>UniRef100_C9ZAW9 Principal sigma factor HrdA n=1 Tax=Streptomyces scabiei 87.22
RepID=C9ZAW9_STRSC
Length = 387
Score = 125 bits (313), Expect = 3e-27
Identities = 75/194 (38%), Positives = 118/194 (60%), Gaps = 4/194 (2%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+A+ +L +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD ++G++ STY W
Sbjct: 149 MAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATW 208
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKK 385
WIRQ +SRAL D +RT+R+P H+ E + ++R + LQE+G P+ D +A L++
Sbjct: 209 WIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPDEVAAHLDL---- 264
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN---NPWHGYDDLALKEEVS 556
A E VS+V L ++ SL+ GE + D + +P L L+E +
Sbjct: 265 ---APERVSEVLRLAQEPV-SLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLE 320
Query: 557 KLISATLGEREKEI 598
++S TLGERE+++
Sbjct: 321 AVLS-TLGERERKV 333
[212][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 125 bits (313), Expect = 3e-27
Identities = 71/193 (36%), Positives = 118/193 (61%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KG++ STY WW
Sbjct: 138 AQKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWW 197
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQ+ G PS + IAE++ +S ++V
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPSPEEIAEAMEISVERV 257
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D + + P + LKE++ +
Sbjct: 258 REIMKIAQEPVSLETPI--------GEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEE 309
Query: 560 LISATLGEREKEI 598
++ TL ERE+ +
Sbjct: 310 VLD-TLTEREERV 321
[213][TOP]
>UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM
14600 RepID=C4G971_9FIRM
Length = 614
Score = 125 bits (313), Expect = 3e-27
Identities = 72/193 (37%), Positives = 115/193 (59%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++KLA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KG++ STY WW
Sbjct: 377 AKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 436
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G PS + IA + + +V
Sbjct: 437 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAREMETTPDRV 496
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D + N P LKE++++
Sbjct: 497 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDENAPVPAEAATFTLLKEQLNE 548
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 549 VLD-TLTERERKV 560
[214][TOP]
>UniRef100_B9YR21 RNA polymerase, sigma 32 subunit, RpoH n=1 Tax='Nostoc azollae'
0708 RepID=B9YR21_ANAAZ
Length = 274
Score = 125 bits (313), Expect = 3e-27
Identities = 58/144 (40%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
L + E +A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG
Sbjct: 29 LNTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIGMQRGVEKFDPTKG 88
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIA 358
+R STY YWWIRQ ++RA+ + +RT+RLP H+ E+L I+ A+ +L +K G P+ +A
Sbjct: 89 YRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAIELA 148
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
+ L ++ ++VR E SLD
Sbjct: 149 DELELTPRQVRECLEKARLPLSLD 172
[215][TOP]
>UniRef100_B4WG00 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WG00_9SYNE
Length = 319
Score = 125 bits (313), Expect = 3e-27
Identities = 70/190 (36%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++K+ SN+RLV+SIA++Y +M DL+Q G +GL RG+EKFD KG+R STY YWW
Sbjct: 83 AKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLKGYRFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D RT+RLP H++E+L IR A+ + E G ++ +AE +++ +KV
Sbjct: 143 IRQAITRAIADTGRTIRLPIHINEKLSKIRKAQREVSLELGRPATVSEVAEKVSLPAEKV 202
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R SL+ G T + ++ ++ + +L LK ++ +L+
Sbjct: 203 RELQRQSRLPLSLNMRI-----GSEQNTELGALLESDSQSPEEYATQNL-LKRDIGQLL- 255
Query: 569 ATLGEREKEI 598
A L ER+K++
Sbjct: 256 ARLTERQKDV 265
[216][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
RepID=B0P3M7_9CLOT
Length = 363
Score = 125 bits (313), Expect = 3e-27
Identities = 73/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++KLA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KG++ STY WW
Sbjct: 126 AKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 185
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G PS + IAE +++ ++V
Sbjct: 186 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAEEMDIPVERV 245
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D + N P LKE++ +
Sbjct: 246 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDENVPVPADAAAFTLLKEQLDE 297
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 298 VL-GTLTEREQKV 309
[217][TOP]
>UniRef100_A8RMR2 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8RMR2_9CLOT
Length = 378
Score = 125 bits (313), Expect = 3e-27
Identities = 73/193 (37%), Positives = 119/193 (61%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR++LA SN+RLV+SIA+RY G + DL+Q G +GL++ +EKFD +KG++ STY WW
Sbjct: 140 ARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 199
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + L+R ++ LQE G P+ + IA L++
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARLDL----- 254
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA---LKEEVSK 559
E VS++ + ++ SL GE S++ D ++N D A L E++ +
Sbjct: 255 --PVERVSEIMKMSQEPV-SLETPIGEEEDSHLGDFIQDDNVLVPQDAAAFTLLHEQLME 311
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 312 VL-LTLTEREQKV 323
[218][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 125 bits (313), Expect = 3e-27
Identities = 73/191 (38%), Positives = 117/191 (61%), Gaps = 2/191 (1%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KGF+ STY WW
Sbjct: 138 ARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR + LQ+ G PS + I E ++++ +KV
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKV 257
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETH-HSYIADTRLENNPWHGYDDLALKEEVSKLI 565
R + + SL+ G ++H +I D+ ++ H +L LKE++ +I
Sbjct: 258 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDSEAQSPSDHAAYEL-LKEQLEDVI 311
Query: 566 SATLGEREKEI 598
TL +RE+ +
Sbjct: 312 D-TLTDREENV 321
[219][TOP]
>UniRef100_P58290 RNA polymerase sigma factor rpoD (Fragment) n=1 Tax=Lactococcus
lactis subsp. cremoris RepID=RPOD_LACLC
Length = 364
Score = 125 bits (313), Expect = 3e-27
Identities = 68/190 (35%), Positives = 115/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++ LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD +KGF+ STY WW
Sbjct: 128 AKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDQTKGFKFSTYATWW 187
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR + LQE G PS + I + L+M+ KV
Sbjct: 188 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKV 247
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + +P + + L+E++ +++
Sbjct: 248 REVLKIAQEPVSLETPI-----GEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMD 302
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 303 -TLTDREENV 311
[220][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 125 bits (313), Expect = 3e-27
Identities = 73/193 (37%), Positives = 115/193 (59%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++K+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 222
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + KL QE G P+ + IA + M+ +K+
Sbjct: 223 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKL 282
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA---LKEEVSK 559
R ++ SL+ G+ S + D +E + D++A L+E++
Sbjct: 283 RFIAKSAQLPISLETPI--------GKEEDSRLGDF-IEADGETPEDEVAKNLLREDLEG 333
Query: 560 LISATLGEREKEI 598
++S TL RE+++
Sbjct: 334 VLS-TLSPRERDV 345
[221][TOP]
>UniRef100_B0JY74 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JY74_MICAN
Length = 377
Score = 124 bits (312), Expect = 4e-27
Identities = 69/193 (35%), Positives = 119/193 (61%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ K+ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD +KG++ STY YWW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWW 198
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNA-KLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++R + +++RT+RLP H+ E+L ++ A ++ Q+ P+ +AE+L M+ +++
Sbjct: 199 IRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMTPEQL 258
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R ++ L R + SLN G+ + + D +++ P +++ +++E+
Sbjct: 259 R-------QLLQLRRQSL-SLNHRVGKGEDTELVDLLEDDDLQLPEDKMNEMMMRQEIFA 310
Query: 560 LISATLGEREKEI 598
++S L EREK++
Sbjct: 311 VLSDVLTEREKDV 323
[222][TOP]
>UniRef100_A9BD74 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BD74_PROM4
Length = 335
Score = 124 bits (312), Expect = 4e-27
Identities = 57/134 (42%), Positives = 95/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+SIA++Y E+ DL+Q G IGL+RG+EKFD ++G++ STY YWW
Sbjct: 100 AKERMVAANLRLVVSIAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 159
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SR +RLP H+ E L ++ + L Q+ TPS+ +AE +++S+++V
Sbjct: 160 IRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRDLSQQLSRTPSVAELAEYIDVSEEEV 219
Query: 389 RNATEAVSKVFSLD 430
++ S+ SL+
Sbjct: 220 KDLMLKASQPVSLE 233
[223][TOP]
>UniRef100_A2RIN0 RNA polymerase sigma factor n=2 Tax=Lactococcus lactis subsp.
cremoris RepID=A2RIN0_LACLM
Length = 447
Score = 124 bits (312), Expect = 4e-27
Identities = 68/190 (35%), Positives = 115/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++ LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD +KGF+ STY WW
Sbjct: 211 AKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWW 270
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR + LQE G PS + I + L+M+ KV
Sbjct: 271 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKV 330
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + +P + + L+E++ +++
Sbjct: 331 REVLKIAQEPVSLETPI-----GEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMD 385
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 386 -TLTDREENV 394
[224][TOP]
>UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA
RepID=C6JGK6_9FIRM
Length = 375
Score = 124 bits (312), Expect = 4e-27
Identities = 72/193 (37%), Positives = 119/193 (61%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KG++ STY WW
Sbjct: 138 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 197
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G P+ + IA+ ++MS ++V
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMDMSVERV 257
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 258 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVE 309
Query: 560 LISATLGEREKEI 598
++S TL +RE+++
Sbjct: 310 VLS-TLTDREQKV 321
[225][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V565_9FIRM
Length = 382
Score = 124 bits (312), Expect = 4e-27
Identities = 72/190 (37%), Positives = 111/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR +L +N+RLV+SIA+RY G DL+Q G +GLL+ +EKFD SKG++ STY WW
Sbjct: 144 ARHRLEEANLRLVVSIAKRYAGRGMMFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWW 203
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + IR ++ LQE G P+ + IA + +S +V
Sbjct: 204 IRQAITRAIADQARTIRIPVHMVETINKYIRISRQLLQELGRDPTPEEIAHRMGLSVARV 263
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G +T S + +P L LKE++S++++
Sbjct: 264 REIMKISQEPVSLETPI-----GEEEDTRLSDFIEDEAAPDPADAASMLLLKEQISEVLT 318
Query: 569 ATLGEREKEI 598
TL RE E+
Sbjct: 319 -TLAPREAEV 327
[226][TOP]
>UniRef100_C0FBN4 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1
RepID=C0FBN4_9CLOT
Length = 372
Score = 124 bits (312), Expect = 4e-27
Identities = 71/193 (36%), Positives = 120/193 (62%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G + DL+Q G +GL++ +EK+D SKGF+ STY WW
Sbjct: 135 AKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKYDYSKGFKFSTYATWW 194
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++R++ D +RT+R+P H+ E + LIR ++ LQE G PS + +AE L+M ++V
Sbjct: 195 IRQAITRSIADQARTIRIPVHMVETINRLIRTSRQLLQELGREPSAEELAEKLDMPVERV 254
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R ++ + +D SL GE S++ D +++ P L E++ +
Sbjct: 255 R-------EIMKISQDPV-SLETPIGEEEDSHLGDFIQDDHVQVPVDAATYTLLHEQLME 306
Query: 560 LISATLGEREKEI 598
++ TL +RE+++
Sbjct: 307 VLD-TLTDREQKV 318
[227][TOP]
>UniRef100_B5VZJ5 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Arthrospira
maxima CS-328 RepID=B5VZJ5_SPIMA
Length = 331
Score = 124 bits (312), Expect = 4e-27
Identities = 60/144 (41%), Positives = 96/144 (66%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ L + LA+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG
Sbjct: 86 LQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKG 145
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
+R STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ A+ +L Q+ G +++ +A
Sbjct: 146 YRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNELA 205
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
L+++ K++R E SLD
Sbjct: 206 AELDLTPKQIREYLEKSRLPLSLD 229
[228][TOP]
>UniRef100_B4VTM7 RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1
Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4VTM7_9CYAN
Length = 331
Score = 124 bits (312), Expect = 4e-27
Identities = 60/144 (41%), Positives = 94/144 (65%), Gaps = 1/144 (0%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ+ + A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG
Sbjct: 85 LQSCIRAGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKG 144
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIA 358
+R STY YWWIRQ ++RA+ + RT+RLP H+ E+L I+ A+ +L Q G +I +A
Sbjct: 145 YRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQTLGRAATISELA 204
Query: 359 ESLNMSQKKVRNATEAVSKVFSLD 430
L+++ K+VR E + SLD
Sbjct: 205 TELDLTPKQVREYLEKARQPLSLD 228
[229][TOP]
>UniRef100_Q03065 RNA polymerase sigma-B factor n=1 Tax=Nostoc sp. PCC 7120
RepID=RPSB_ANASP
Length = 332
Score = 124 bits (312), Expect = 4e-27
Identities = 58/140 (41%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Frame = +2
Query: 14 LMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRIS 193
L + +A++K+ +N+RLV+SIA++Y E DL+Q G +GL RG+EKFD + G++ S
Sbjct: 91 LSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFS 150
Query: 194 TYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIAESLN 370
TY YWWIRQG++RA+ SRT+RLP H+ ++L I+ + L +K G + IA++LN
Sbjct: 151 TYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALN 210
Query: 371 MSQKKVRNATEAVSKVFSLD 430
+ ++R + V + SLD
Sbjct: 211 LEPSQIREYLQLVRQPVSLD 230
[230][TOP]
>UniRef100_Q04506 RNA polymerase sigma factor rpoD n=1 Tax=Lactococcus lactis subsp.
lactis RepID=RPOD_LACLA
Length = 386
Score = 124 bits (312), Expect = 4e-27
Identities = 68/190 (35%), Positives = 115/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++ LA +N+RLV+SIA+RY G + DL+Q G +GL++ ++KFD +KGF+ STY WW
Sbjct: 150 AKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWW 209
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR + LQE G PS + I + L+M+ KV
Sbjct: 210 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKV 269
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + + SL+ G ++H + + +P + + L+E++ +++
Sbjct: 270 REVLKIAQEPVSLETPI-----GEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMD 324
Query: 569 ATLGEREKEI 598
TL +RE+ +
Sbjct: 325 -TLTDREENV 333
[231][TOP]
>UniRef100_Q9KHE8 Group 2 sigma 70-type sigma factor D n=1 Tax=Nostoc sp. PCC 7120
RepID=Q9KHE8_ANASP
Length = 332
Score = 124 bits (311), Expect = 6e-27
Identities = 57/135 (42%), Positives = 91/135 (67%), Gaps = 1/135 (0%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+A+ K+ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD +KG+R STY YW
Sbjct: 96 IAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYW 155
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIAESLNMSQKK 385
WIRQ ++RA+ + +RT+RLP H+ E+L I+ A+ +L ++ G P+ +A L ++ K+
Sbjct: 156 WIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTPKQ 215
Query: 386 VRNATEAVSKVFSLD 430
VR E SLD
Sbjct: 216 VREYLEKARLPLSLD 230
[232][TOP]
>UniRef100_Q821E0 RNA polymerase sigma factor n=1 Tax=Chlamydophila caviae
RepID=Q821E0_CHLCV
Length = 572
Score = 124 bits (311), Expect = 6e-27
Identities = 69/199 (34%), Positives = 119/199 (59%), Gaps = 2/199 (1%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ W+ + A++++ SN+RLV+SIA++Y N G DL+Q G +GL++ +EKF+ +G
Sbjct: 307 LQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 366
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIA 358
++ STY WWIRQ V+RA+ D +RT+R+P H+ E + ++R AK + E G P+ + +A
Sbjct: 367 YKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELA 426
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHH-SYIADTRLENNPWHGYDDL 535
E L ++ +VR + SL + G GE+ ++ DT +E +P
Sbjct: 427 EELGLTPDRVREIYKIAQHPISLQAEV-----GEGGESSFGDFLEDTGVE-SPAEATGYS 480
Query: 536 ALKEEVSKLISATLGEREK 592
LK+++ +++ TL +RE+
Sbjct: 481 MLKDKMKEVLK-TLTDRER 498
[233][TOP]
>UniRef100_Q7U3K5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U3K5_SYNPX
Length = 467
Score = 124 bits (311), Expect = 6e-27
Identities = 70/180 (38%), Positives = 105/180 (58%), Gaps = 8/180 (4%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++ + +N+RLV+++A++Y G E+ DLVQ G +GL R +EKFD ++GFR STY YWW
Sbjct: 227 AKDHMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWW 286
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ SRT+RLP H+ E+L I+ A+ + +G SI +A +L +S+ V
Sbjct: 287 IRQGMTRAIATQSRTIRLPVHVTEKLNRIKRAQQEIATNEGRIASIADLARALKLSEDTV 346
Query: 389 RNATEAVSKVFSLD----RDAFPSLNGLPGE---THHSYIADTRLENNPWHGYDDLALKE 547
R V + SLD RD L L + T + L N+ H D+L +E
Sbjct: 347 RQTLARVPRSVSLDTRVGRDQDTQLGDLIEDGKATPEQTLTHDELHNDLEHLLDELTSRE 406
[234][TOP]
>UniRef100_Q748B8 RNA polymerase sigma factor n=1 Tax=Geobacter sulfurreducens
RepID=Q748B8_GEOSL
Length = 577
Score = 124 bits (311), Expect = 6e-27
Identities = 69/194 (35%), Positives = 115/194 (59%), Gaps = 4/194 (2%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
LA+ +L +N+RLV+SIA++Y N G + DL+Q G IGL++ ++KF+ +G++ STY W
Sbjct: 339 LAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATW 398
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKK 385
WIRQ ++RA+ D +RT+R+P H+ E + LIR ++ +QE G PS + IAE +N+ K
Sbjct: 399 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDK 458
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN---NPWHGYDDLALKEEVS 556
VR + + SL+ GE S++ D + +P L E+ +
Sbjct: 459 VRKVLKIAKEPISLETPI--------GEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTA 510
Query: 557 KLISATLGEREKEI 598
+++ ATL RE+++
Sbjct: 511 RVL-ATLTPREEKV 523
[235][TOP]
>UniRef100_Q5L4N8 RNA polymerase sigma factor n=1 Tax=Chlamydophila abortus
RepID=Q5L4N8_CHLAB
Length = 571
Score = 124 bits (311), Expect = 6e-27
Identities = 69/199 (34%), Positives = 119/199 (59%), Gaps = 2/199 (1%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ W+ + A++++ SN+RLV+SIA++Y N G DL+Q G +GL++ +EKF+ +G
Sbjct: 307 LQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 366
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIA 358
++ STY WWIRQ V+RA+ D +RT+R+P H+ E + ++R AK + E G P+ + +A
Sbjct: 367 YKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELA 426
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHH-SYIADTRLENNPWHGYDDL 535
E L ++ +VR + SL + G GE+ ++ DT +E +P
Sbjct: 427 EELGLTPDRVREIYKIAQHPISLQAEV-----GEGGESSFGDFLEDTGVE-SPAEATGYS 480
Query: 536 ALKEEVSKLISATLGEREK 592
LK+++ +++ TL +RE+
Sbjct: 481 MLKDKMKEVLK-TLTDRER 498
[236][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 124 bits (311), Expect = 6e-27
Identities = 60/134 (44%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A++K+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 139 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 198
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IAE + M+ +K+
Sbjct: 199 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEKL 258
Query: 389 RNATEAVSKVFSLD 430
R ++ SL+
Sbjct: 259 RFIAKSAQLPISLE 272
[237][TOP]
>UniRef100_Q256K4 RNA polymerase sigma factor n=1 Tax=Chlamydophila felis Fe/C-56
RepID=Q256K4_CHLFF
Length = 570
Score = 124 bits (311), Expect = 6e-27
Identities = 69/199 (34%), Positives = 119/199 (59%), Gaps = 2/199 (1%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ W+ + A++++ SN+RLV+SIA++Y N G DL+Q G +GL++ +EKF+ +G
Sbjct: 305 LQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 364
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIA 358
++ STY WWIRQ V+RA+ D +RT+R+P H+ E + ++R AK + E G P+ + +A
Sbjct: 365 YKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELA 424
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHH-SYIADTRLENNPWHGYDDL 535
E L ++ +VR + SL + G GE+ ++ DT +E +P
Sbjct: 425 EELGLTPDRVREIYKIAQHPISLQAEV-----GEGGESSFGDFLEDTGVE-SPAEATGYS 478
Query: 536 ALKEEVSKLISATLGEREK 592
LK+++ +++ TL +RE+
Sbjct: 479 MLKDKMKEVLK-TLTDRER 496
[238][TOP]
>UniRef100_Q0IDY7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0IDY7_SYNS3
Length = 335
Score = 124 bits (311), Expect = 6e-27
Identities = 54/122 (44%), Positives = 89/122 (72%), Gaps = 1/122 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G++ STY YWW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TPS+ +A + + +++V
Sbjct: 160 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEEV 219
Query: 389 RN 394
++
Sbjct: 220 KD 221
[239][TOP]
>UniRef100_Q0IBE2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0IBE2_SYNS3
Length = 318
Score = 124 bits (311), Expect = 6e-27
Identities = 54/122 (44%), Positives = 89/122 (72%), Gaps = 1/122 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+E++ +N+RLV+S+A++Y E+ DL+Q G IGL+RG+EKFD ++G++ STY YWW
Sbjct: 83 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 142
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RA+ + SRT+RLP H+ E L ++ + L QE G TPS+ +A + + +++V
Sbjct: 143 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEEV 202
Query: 389 RN 394
++
Sbjct: 203 KD 204
[240][TOP]
>UniRef100_P73710 RNA polymerase sigma factor n=1 Tax=Synechocystis sp. PCC 6803
RepID=P73710_SYNY3
Length = 369
Score = 124 bits (311), Expect = 6e-27
Identities = 74/203 (36%), Positives = 119/203 (58%), Gaps = 5/203 (2%)
Frame = +2
Query: 5 QAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGF 184
+ WL + A+ ++ SN+RLV+SIA+RY N G DL+Q G IGL R EKFD KG+
Sbjct: 123 EIWLYQLRAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPDKGY 182
Query: 185 RISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAE 361
+ STY YWWIRQ ++R + +++RT+RLP H+ E+L I+ A+ L QE P+ +A
Sbjct: 183 KFSTYAYWWIRQAITRTIANDARTIRLPIHVVEKLNKIKKAQRSLKQELKRNPNEGELAA 242
Query: 362 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDL-- 535
+L+++ ++R ++ L R + SLN G+ + + D LE+ +DL
Sbjct: 243 ALDITPAQLR-------QLLQLRRQSL-SLNHRVGKGEDTELVDL-LEDQQLQLPEDLMN 293
Query: 536 --ALKEEVSKLISATLGEREKEI 598
L+ E+ ++++ L ERE E+
Sbjct: 294 ESMLRREIVEVLAEVLTEREMEV 316
[241][TOP]
>UniRef100_B3E612 RNA polymerase sigma factor n=1 Tax=Geobacter lovleyi SZ
RepID=B3E612_GEOLS
Length = 586
Score = 124 bits (311), Expect = 6e-27
Identities = 68/197 (34%), Positives = 115/197 (58%), Gaps = 4/197 (2%)
Frame = +2
Query: 20 ECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTY 199
+ +A+ +L +N+RLV+SIA++Y N G + DL+Q G IGL++ ++KF+ +G++ STY
Sbjct: 345 KARIAKSELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTY 404
Query: 200 VYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMS 376
WWIRQ ++RA+ D +RT+R+P H+ E + LIR ++ +QE G PS + IA+ + +
Sbjct: 405 ATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQENGREPSPEEIADRMQLP 464
Query: 377 QKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLEN---NPWHGYDDLALKE 547
KVR + + SL+ GE S++ D + NP L E
Sbjct: 465 LDKVRKVLKIAKEPISLETPI--------GEEEDSHLGDFIEDKGVVNPLEAVIKANLSE 516
Query: 548 EVSKLISATLGEREKEI 598
+ S+++S TL RE+++
Sbjct: 517 QTSRVLS-TLTPREEKV 532
[242][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 124 bits (311), Expect = 6e-27
Identities = 72/191 (37%), Positives = 117/191 (61%), Gaps = 2/191 (1%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
AR++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KGF+ STY WW
Sbjct: 138 ARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 197
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR + LQ+ G PS + I E ++++ +KV
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKV 257
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETH-HSYIADTRLENNPWHGYDDLALKEEVSKLI 565
R + + SL+ G ++H +I D+ ++ H +L LKE++ ++
Sbjct: 258 REILKIAQEPVSLETPI-----GEEDDSHLGDFIEDSEAQSPSDHAAYEL-LKEQLEDVL 311
Query: 566 SATLGEREKEI 598
TL +RE+ +
Sbjct: 312 D-TLTDREENV 321
[243][TOP]
>UniRef100_A2BQ58 Putative type II alternative sigma factor, sigma70 family n=1
Tax=Prochlorococcus marinus str. AS9601
RepID=A2BQ58_PROMS
Length = 307
Score = 124 bits (311), Expect = 6e-27
Identities = 70/194 (36%), Positives = 116/194 (59%), Gaps = 11/194 (5%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ ++ +N+RLV+++A+RY G E+ DL+Q G +GL R +EK+D S+G R STY YWW
Sbjct: 65 AKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYWW 124
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQG++RAL SRT+R+P +++E+L +R+AK +L Q KGI P+ D +AE + +++++V
Sbjct: 125 IRQGLNRALSTQSRTIRIPVNINEKLTKLRSAKSKLMQLKGIPPTSDELAEEMKITKEEV 184
Query: 389 --------RNATEAVSKVFSLDRDAFPSLNGLPG-ETHHSYIAD-TRLENNPWHGYDDLA 538
R+ T ++ D ++ LP +T +A+ + W D
Sbjct: 185 DELLSCELRSITVSLQGTVKSKSDPSELVDILPSDQTPPMELAELAERTASAWKLLDKAN 244
Query: 539 LKEEVSKLISATLG 580
L E+ K++S G
Sbjct: 245 LTEKERKIVSLRFG 258
[244][TOP]
>UniRef100_Q59302 RNA polymerase sigma factor n=1 Tax=Chlamydophila psittaci
RepID=Q59302_CHLPS
Length = 571
Score = 124 bits (311), Expect = 6e-27
Identities = 69/199 (34%), Positives = 119/199 (59%), Gaps = 2/199 (1%)
Frame = +2
Query: 2 LQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKG 181
LQ W+ + A++++ SN+RLV+SIA++Y N G DL+Q G +GL++ +EKF+ +G
Sbjct: 307 LQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 366
Query: 182 FRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIA 358
++ STY WWIRQ V+RA+ D +RT+R+P H+ E + ++R AK + E G P+ + +A
Sbjct: 367 YKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELA 426
Query: 359 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHH-SYIADTRLENNPWHGYDDL 535
E L ++ +VR + SL + G GE+ ++ DT +E +P
Sbjct: 427 EELGLTPDRVREIYKIAQHPISLQAEV-----GEGGESSFGDFLEDTGVE-SPAEATGYS 480
Query: 536 ALKEEVSKLISATLGEREK 592
LK+++ +++ TL +RE+
Sbjct: 481 MLKDKMKEVLK-TLTDRER 498
[245][TOP]
>UniRef100_Q1PW65 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1PW65_9BACT
Length = 551
Score = 124 bits (311), Expect = 6e-27
Identities = 70/190 (36%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ KL+ +N+RLV+SIA++Y N G DL+Q G GL+R ++K++ +G++ STY WW
Sbjct: 308 AKRKLSGANLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWW 367
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRN-AKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++R++ D +RT+R+P H+ E + IRN +K LQ+KG P+I+ IA + +S +
Sbjct: 368 IRQAITRSIADQARTIRIPVHMIETMSKIRNISKKLLQDKGREPTIEEIAREVKISVPEA 427
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 568
R + SLDR S + G+ +I D + E +P LK+++ ++
Sbjct: 428 RRVLKISRHQISLDRPVGESEDSSFGD----FIEDEKAE-SPVAAATQEMLKDKIESVLE 482
Query: 569 ATLGEREKEI 598
TL RE+EI
Sbjct: 483 -TLTYREREI 491
[246][TOP]
>UniRef100_C7GGM6 RNA polymerase sigma factor RpoD n=1 Tax=Roseburia intestinalis
L1-82 RepID=C7GGM6_9FIRM
Length = 397
Score = 124 bits (311), Expect = 6e-27
Identities = 72/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+++LA +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KG++ STY WW
Sbjct: 160 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 219
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D +RT+R+P H+ E + LIR ++ LQE G P+ + IA +NM ++V
Sbjct: 220 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMNMPVERV 279
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENN---PWHGYDDLALKEEVSK 559
R + + SL+ GE S++ D ++N P LKE++ +
Sbjct: 280 REILKISQEPVSLETPI--------GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLEE 331
Query: 560 LISATLGEREKEI 598
++ TL ERE+++
Sbjct: 332 VL-GTLTEREQKV 343
[247][TOP]
>UniRef100_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4G0D3_ABIDE
Length = 409
Score = 124 bits (311), Expect = 6e-27
Identities = 71/194 (36%), Positives = 118/194 (60%), Gaps = 5/194 (2%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A ++L SN+RLV+SIA++Y G DL+Q G +GL++ ++KFD SKG++ STY WW
Sbjct: 171 ATDRLTESNLRLVVSIAKKYVGRGLSFLDLIQEGNLGLIKAVDKFDYSKGYKFSTYATWW 230
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++R++ D SRT+R+P H+ E + R ++ LQE G P+ + IA+ +N+ +KV
Sbjct: 231 IRQAITRSIADQSRTIRIPVHMSEVINKAYRISRSLLQELGREPTEEEIAKEMNLPVEKV 290
Query: 389 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEEVS 556
R + + SLD GE S++ D ++++ G +D A L++++
Sbjct: 291 REIMKISADPISLDTPI--------GEEDDSHLGDF-IKDDTIMGPEDAAAYTMLQDQIQ 341
Query: 557 KLISATLGEREKEI 598
KL++ TL ERE+ +
Sbjct: 342 KLLT-TLSEREQRV 354
[248][TOP]
>UniRef100_C4CH81 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CH81_9CHLR
Length = 538
Score = 124 bits (311), Expect = 6e-27
Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 5/195 (2%)
Frame = +2
Query: 29 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 208
+AR+KL +N+RLV+S+A++Y G M DLVQ G +GL+R +EKF KGF+ STY W
Sbjct: 300 IARKKLTEANLRLVVSVAKKYGGRGMSMLDLVQEGNLGLIRAVEKFQHHKGFKFSTYATW 359
Query: 209 WIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAESLNMSQKK 385
WIRQ ++RA+ D +RT+R+P H+ E++ LIR ++ QE G P+ + IA + + K
Sbjct: 360 WIRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGREPTSEEIAAEMGLPPDK 419
Query: 386 VRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEEV 553
VR + + SL+ GE S + D +E++ D A LKE+V
Sbjct: 420 VREILKISQEPVSLEMPI--------GEEEDSNLGDF-IEDSKALAPSDAASLKLLKEQV 470
Query: 554 SKLISATLGEREKEI 598
++ +LG+RE+ +
Sbjct: 471 DDVL-GSLGDRERRV 484
[249][TOP]
>UniRef100_B4WSK5 RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WSK5_9SYNE
Length = 298
Score = 124 bits (311), Expect = 6e-27
Identities = 58/134 (43%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+ ++ +N+RLV+S+A++Y ++ DL+Q G IG+ RG+EKFD SKG+R STY YWW
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWW 122
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ + SRT+RLP H+ E+L I+ A+ + Q+ G TP+ IA++ + K+V
Sbjct: 123 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQFTQQHGRTPTASEIAQATGFTIKQV 182
Query: 389 RNATEAVSKVFSLD 430
R + + SLD
Sbjct: 183 REYLDRSRQPLSLD 196
[250][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 124 bits (311), Expect = 6e-27
Identities = 60/134 (44%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Frame = +2
Query: 32 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 211
A+EK+ SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG++ STY WW
Sbjct: 144 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 203
Query: 212 IRQGVSRALVDNSRTLRLPTHLHERLGLI-RNAKLRLQEKGITPSIDRIAESLNMSQKKV 388
IRQ ++RA+ D SRT+RLP HL+E + I + K+ QE G P+ + IA+ + M+ +K+
Sbjct: 204 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIADRMEMTIEKL 263
Query: 389 RNATEAVSKVFSLD 430
R ++ SL+
Sbjct: 264 RFIAKSAQLPISLE 277