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[1][TOP]
>UniRef100_Q9LQV2 F10B6.19 n=1 Tax=Arabidopsis thaliana RepID=Q9LQV2_ARATH
Length = 1107
Score = 316 bits (810), Expect = 6e-85
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 155
[2][TOP]
>UniRef100_Q8H1K9 RNA-dependent RNA polymerase 1 n=1 Tax=Arabidopsis thaliana
RepID=Q8H1K9_ARATH
Length = 1107
Score = 316 bits (810), Expect = 6e-85
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 155
[3][TOP]
>UniRef100_B3SND7 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B3SND7_GOSHI
Length = 1110
Score = 182 bits (461), Expect = 2e-44
Identities = 95/155 (61%), Positives = 111/155 (71%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GF + VSA EVK FLE TG TVYA+K+RQ KK G R +AIVQFT
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAG 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
LII A +RLYYGRSYLKA E+E DIVPKPR LHT+ + + FGCQVS +KF LW A
Sbjct: 60 LIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD 119
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V ++FG GMRKL F S+ Y+LEL YENIWQ
Sbjct: 120 NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQ 154
[4][TOP]
>UniRef100_B2B9K0 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B2B9K0_GOSHI
Length = 1110
Score = 177 bits (449), Expect = 4e-43
Identities = 93/155 (60%), Positives = 109/155 (70%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GF + VSA EVK FLE TG TVYA+K+RQ KK G R +AIVQFT
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAG 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
LII A +RLYYGRSYLKA E+E DIVPKPR LHT+ + + F C VS +KF LW A
Sbjct: 60 LIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKAD 119
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V ++FG GMRKL F S+ Y+LEL YENIWQ
Sbjct: 120 NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQ 154
[5][TOP]
>UniRef100_A7P3W5 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W5_VITVI
Length = 1121
Score = 173 bits (439), Expect = 6e-42
Identities = 80/155 (51%), Positives = 114/155 (73%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
M KTIQV+GFP+ VSA+E+K+FLE+ TG GT+ A++++QP+ G +A VQFTS
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
IIT ++++YGR+YLKA E++ DI+PKPRA LH++ + + FGCQ+S ++F LW A
Sbjct: 61 FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V V FG G+RK +F S ++Y+LELSYENIWQ
Sbjct: 121 NVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQ 155
[6][TOP]
>UniRef100_Q9ZRY7 RNA-directed RNA polymerase n=1 Tax=Nicotiana tabacum
RepID=Q9ZRY7_TOBAC
Length = 1116
Score = 163 bits (413), Expect = 6e-39
Identities = 86/155 (55%), Positives = 113/155 (72%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQVFGFP +SAE VKKFLE TG+GTVYA++V+Q KGG R +A VQF + +
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQ-SKGGRRAFAKVQFANNKSAE 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++ LYYG SYLKA+E++ DIV +PR + + G+ + FGCQ+S KKF L S +
Sbjct: 60 FIIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS-K 117
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
DV + FGIG++K++F S DY+L+LSYENIWQ
Sbjct: 118 DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQ 152
[7][TOP]
>UniRef100_UPI000198295F PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI000198295F
Length = 1109
Score = 163 bits (412), Expect = 8e-39
Identities = 80/155 (51%), Positives = 112/155 (72%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+G P+ VSA E+K+FLE+ TG GT+ A++++QPK G +A VQFTS R
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
LII+ A ++L+YG +YLKA E++ DI+PKPR LH++ + + FG Q+S ++F LW A
Sbjct: 61 LIISLA-KQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAI 119
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V V FG G+RK +F S ++Y+LELS ENIWQ
Sbjct: 120 NVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQ 154
[8][TOP]
>UniRef100_A4UBI7 Putative RNA-directed RNA polymerase 1 n=1 Tax=Nicotiana attenuata
RepID=A4UBI7_9SOLA
Length = 1044
Score = 162 bits (411), Expect = 1e-38
Identities = 85/155 (54%), Positives = 114/155 (73%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQVFGFP +SAE VK FLE TG+GTVYA++V+Q KGG R +A VQF + +
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQ-SKGGRRAFAKVQFANNKSAE 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
LI+ A+E LYYG SYL+A+E++ DIV +PR + + G+ + FGCQ+S KKF L S +
Sbjct: 60 LIMDLASEGLYYGPSYLQAWEMKTDIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGS-K 117
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
DV + FGIG++K++F S+ DY+L+LSYENIWQ
Sbjct: 118 DVSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQ 152
[9][TOP]
>UniRef100_B9HJH7 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH7_POPTR
Length = 1133
Score = 160 bits (405), Expect = 5e-38
Identities = 78/155 (50%), Positives = 107/155 (69%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
M KT++V GFP+ +A V+ FLE TG GTV A+K+R+ + GG R YAIVQFT+ R
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II+ A RL+YG SYL A +++DI+P+PR+ LHT+ + + FG Q S +KF +WS
Sbjct: 61 QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V V+FG+GMRKLHF S +Y+L L +ENIWQ
Sbjct: 121 NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQ 155
[10][TOP]
>UniRef100_C1I213 RNA-dependent RNA polymerase n=1 Tax=Nicotiana glutinosa
RepID=C1I213_NICGU
Length = 1117
Score = 156 bits (394), Expect = 1e-36
Identities = 83/155 (53%), Positives = 112/155 (72%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQVFGFP +SAE VK FLE TG+GTVYA++V+Q KGG R +A VQF + +
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQ-SKGGRRAFAKVQFANNKSAE 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
+II A++ LYYG SYLKA+E++ IV +PR + + G+ + FGCQ+S KKF L S +
Sbjct: 60 IIIDLASKGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGS-K 117
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
V + FGIG++K++F S+ DY+L+LSYENIWQ
Sbjct: 118 VVSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQ 152
[11][TOP]
>UniRef100_Q6L449 RNA-directed RNA polymerase-like, identical n=1 Tax=Solanum
demissum RepID=Q6L449_SOLDE
Length = 190
Score = 148 bits (374), Expect = 2e-34
Identities = 82/155 (52%), Positives = 107/155 (69%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQVFGFPN +SAE VK FLE+ TG GT+ A++V+Q KGG R +A VQF
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQ-SKGGSRAFAKVQFVDNISAD 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E++ DIV + RA + + G+ + FGCQ+S KF L S
Sbjct: 60 KIINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVLGST- 117
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V + FGIG++K F S DY+L+LSYENIWQ
Sbjct: 118 EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQ 152
[12][TOP]
>UniRef100_A4UV17 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV17_SOLTU
Length = 1115
Score = 148 bits (374), Expect = 2e-34
Identities = 82/155 (52%), Positives = 107/155 (69%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQVFGFPN +SAE VK FLE+ TG GT+ A++V+Q KGG R +A VQF
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQ-SKGGSRAFAKVQFVDNISAD 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E++ DIV + RA + + G+ + FGCQ+S KF L S
Sbjct: 60 KIINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVLGST- 117
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V + FGIG++K F S DY+L+LSYENIWQ
Sbjct: 118 EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQ 152
[13][TOP]
>UniRef100_Q9ZR58 RNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum
RepID=Q9ZR58_SOLLC
Length = 1114
Score = 148 bits (373), Expect = 3e-34
Identities = 83/155 (53%), Positives = 105/155 (67%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQVFGFP +SAE VK FLE+ TG GTV A++V+Q KGG R +A VQF
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQ-SKGGSRAFAKVQFADNISAD 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
IIT A RLY+G SYLKA+E++ DIV + RA + + G+ + FGCQ+S KF L S
Sbjct: 60 KIITLANNRLYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLGST- 117
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V + FGIG++K F S DY+L+LSYENIWQ
Sbjct: 118 EVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQ 152
[14][TOP]
>UniRef100_A4UV44 Putative RNA-dependent RNA-polymerase (Fragment) n=1 Tax=Solanum
tuberosum RepID=A4UV44_SOLTU
Length = 841
Score = 145 bits (366), Expect = 2e-33
Identities = 81/155 (52%), Positives = 106/155 (68%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GFP +SAE VK FLE+ TG GTV A++V+Q KGG R +A VQF
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQ-SKGGSRAFAKVQFVDNISAD 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E++ DIV + RA + + G+ + FGCQ+S KF L S
Sbjct: 60 KIINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAVLGST- 117
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V + FGIG++K F S DY+L+LSYENIWQ
Sbjct: 118 EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQ 152
[15][TOP]
>UniRef100_Q6RFI0 RNA-directed RNA polymerase 1 n=1 Tax=Hordeum vulgare subsp.
vulgare RepID=Q6RFI0_HORVD
Length = 1115
Score = 144 bits (364), Expect = 3e-33
Identities = 72/157 (45%), Positives = 100/157 (63%), Gaps = 3/157 (1%)
Frame = +1
Query: 76 GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKK--GGPRVYAIVQFTSERHT 249
GKT+QV GFP+ V+A+ VK LE++ G+G V+A+K+R PK R +AIVQF SE H
Sbjct: 3 GKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62
Query: 250 RLIITAAAER-LYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 426
L++ AA L G YLKA E+DIVP+PR ++ + G K+ FGC + + LWS
Sbjct: 63 SLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWS 122
Query: 427 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
DV V FG M+++ F + K Y+LELSYE+IW+
Sbjct: 123 GTDVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWE 159
[16][TOP]
>UniRef100_Q0KIR1 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q0KIR1_SOLDE
Length = 241
Score = 143 bits (360), Expect = 9e-33
Identities = 79/155 (50%), Positives = 105/155 (67%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GFP+ + AE VK FLE+ TG GTV A+ V+Q KGG R +A VQF
Sbjct: 66 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQ-SKGGSRAFAKVQFVDNISAD 124
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E++ DIV A + + G+ + FGCQ+S KF L S
Sbjct: 125 KIINLASKRLYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAVLGST- 181
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V + FGIG++K++F S DY+L+LSYENIWQ
Sbjct: 182 EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQ 216
[17][TOP]
>UniRef100_Q0KIP4 RNA-directed RNA polymerase-like, putative n=1 Tax=Solanum demissum
RepID=Q0KIP4_SOLDE
Length = 215
Score = 143 bits (360), Expect = 9e-33
Identities = 79/155 (50%), Positives = 105/155 (67%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GFP+ + AE VK FLE+ TG GTV A+ V+Q KGG R +A VQF
Sbjct: 27 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQ-SKGGSRAFAKVQFVDNISAD 85
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E++ DIV A + + G+ + FGCQ+S KF L S
Sbjct: 86 KIINLASKRLYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAVLGST- 142
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V + FGIG++K++F S DY+L+LSYENIWQ
Sbjct: 143 EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQ 177
[18][TOP]
>UniRef100_Q0KIK8 RNA-directed RNA polymerase-like, putative n=1 Tax=Solanum
tuberosum RepID=Q0KIK8_SOLTU
Length = 274
Score = 143 bits (360), Expect = 9e-33
Identities = 79/155 (50%), Positives = 105/155 (67%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GFP+ + AE VK FLE+ TG GTV A+ V+Q KGG R +A VQF
Sbjct: 86 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQ-SKGGSRAFAKVQFVDNISAD 144
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E++ DIV A + + G+ + FGCQ+S KF L S
Sbjct: 145 KIINLASKRLYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAVLGST- 201
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V + FGIG++K++F S DY+L+LSYENIWQ
Sbjct: 202 EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQ 236
[19][TOP]
>UniRef100_A4UV46 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV46_SOLTU
Length = 1065
Score = 143 bits (360), Expect = 9e-33
Identities = 79/155 (50%), Positives = 105/155 (67%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GFP+ + AE VK FLE+ TG GTV A+ V+Q KGG R +A VQF
Sbjct: 1 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQ-SKGGSRAFAKVQFVDNISAD 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E++ DIV A + + G+ + FGCQ+S KF L S
Sbjct: 60 KIINLASKRLYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAVLGST- 116
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V + FGIG++K++F S DY+L+LSYENIWQ
Sbjct: 117 EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQ 151
[20][TOP]
>UniRef100_B5M060 RNA-directed RNA polymerase 1b n=1 Tax=Hordeum vulgare
RepID=B5M060_HORVU
Length = 1115
Score = 142 bits (359), Expect = 1e-32
Identities = 71/157 (45%), Positives = 100/157 (63%), Gaps = 3/157 (1%)
Frame = +1
Query: 76 GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKK--GGPRVYAIVQFTSERHT 249
GKT+QV GFP+ V+A+ VK LE++ G+G V+A+K+R PK R +AIVQF SE H
Sbjct: 3 GKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62
Query: 250 RLIITAAAER-LYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 426
L++ AA L G YLKA E+DIVP+PR ++ + G K+ FGC + + LWS
Sbjct: 63 SLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWS 122
Query: 427 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V V FG M+++ F + K Y+LELSYE+IW+
Sbjct: 123 GTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWE 159
[21][TOP]
>UniRef100_A4UV18 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV18_SOLTU
Length = 935
Score = 142 bits (359), Expect = 1e-32
Identities = 80/155 (51%), Positives = 104/155 (67%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GFP +SAE VK FLE+ TG GTV A++V+Q KGG R +A VQF
Sbjct: 1 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQ-SKGGSRAFAKVQFVDNISAD 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E+E DIV + A + + G+ + FGCQ+S KF L S
Sbjct: 60 KIINLASKRLYFGSSYLKAWELETDIV-QLWAYVDHMDGITLNFGCQISDDKFAVLGST- 117
Query: 433 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
+V + FGIG++ F S DY+L+LSYENIWQ
Sbjct: 118 EVSIKFGIGLKNFFFFLSSGSADYKLQLSYENIWQ 152
[22][TOP]
>UniRef100_B9HVU2 Rna-dependent RNA polymerase (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9HVU2_POPTR
Length = 1102
Score = 139 bits (351), Expect = 1e-31
Identities = 72/159 (45%), Positives = 103/159 (64%), Gaps = 4/159 (2%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
M KTI ++GFP +++K+FLE +G GTV A+ V QPK G R AIV+FT+ +
Sbjct: 1 MAKTISLYGFPTVEPPDDIKEFLEEYSGEGTVVAVHVAQPKSAGSRTNAIVEFTTSEAAQ 60
Query: 253 LIITAAA--ERLYYGRSYLKAFEVEQDIVPKPRA--SLHTISGLKMFFGCQVSTKKFLTL 420
I + E L+YG SYLKA +V +D VP +A + +++ + + FGCQVS +KF L
Sbjct: 61 NIKLKSLDDEGLWYGNSYLKARDVYRDTVPMRKAFQTQYSMDNITLHFGCQVSKEKFSVL 120
Query: 421 WSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
W+ +DV V FG+ +RK HF + K+Y+LELSYENI+Q
Sbjct: 121 WTQKDVSVKFGVELRKFHFFLTHLSKNYKLELSYENIFQ 159
[23][TOP]
>UniRef100_Q6RFH9 RNA-directed RNA polymerase 2 n=1 Tax=Hordeum vulgare subsp.
vulgare RepID=Q6RFH9_HORVD
Length = 1115
Score = 127 bits (320), Expect = 4e-28
Identities = 67/157 (42%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Frame = +1
Query: 76 GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKK--GGPRVYAIVQFTSERHT 249
GKT+QV GFP V+ VK LE++ G G V A+K+R PK R +AIVQF +E H
Sbjct: 3 GKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHA 62
Query: 250 RLIITAA-AERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 426
L++ AA L G +YLK E+DI+ KPR +L + + FGC + + LWS
Sbjct: 63 SLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVLWS 122
Query: 427 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
V V FG M+K+ F ++ K Y+LELSYE+IW+
Sbjct: 123 GTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWE 159
[24][TOP]
>UniRef100_B5M059 RNA-directed RNA polymerase 1a (Fragment) n=1 Tax=Hordeum vulgare
RepID=B5M059_HORVU
Length = 1114
Score = 127 bits (320), Expect = 4e-28
Identities = 67/157 (42%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Frame = +1
Query: 76 GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKK--GGPRVYAIVQFTSERHT 249
GKT+QV GFP V+ VK LE++ G G V A+K+R PK R +AIVQF +E H
Sbjct: 3 GKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHA 62
Query: 250 RLIITAA-AERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 426
L++ AA L G +YLK E+DI+ KPR +L + + FGC + + LWS
Sbjct: 63 SLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVLWS 122
Query: 427 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
V V FG M+K+ F ++ K Y+LELSYE+IW+
Sbjct: 123 GTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWE 159
[25][TOP]
>UniRef100_C5XZ94 Putative uncharacterized protein Sb04g028630 n=1 Tax=Sorghum
bicolor RepID=C5XZ94_SORBI
Length = 1114
Score = 123 bits (309), Expect = 7e-27
Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKK--GGPRVYAIVQFTSERH 246
+G+TIQV GF SAE VK+FLER++G+GT+YA+K+R P+ R +AIVQF S+
Sbjct: 2 VGRTIQVHGFALTDSAESVKEFLERISGAGTIYALKLRHPRNISANSRAFAIVQFQSQES 61
Query: 247 TRLI---ITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLT 417
L+ + A R+ GR YLK ++DIVP+PR + ++ + GC V
Sbjct: 62 ASLVEDVVQRNAPRI--GRFYLKTRPADRDIVPRPRIPMFSLEDTVLHLGCLVKENILSA 119
Query: 418 LWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
L++A +V V FG M+K++F S+ Y+LELSYE+IW+
Sbjct: 120 LFTASNVSVQFGFDMKKIYFYLSYNFIKYKLELSYESIWE 159
[26][TOP]
>UniRef100_B0ZZ01 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Solanum
lycopersicum RepID=B0ZZ01_SOLLC
Length = 163
Score = 122 bits (307), Expect = 1e-26
Identities = 70/142 (49%), Positives = 92/142 (64%)
Frame = +1
Query: 112 VSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTRLIITAAAERLYYG 291
+SAE V FLE+ TG GT A++V+Q KGG R +A VQF IIT A RLY+G
Sbjct: 1 LSAEVVLSFLEKYTGYGTSCALEVKQ-SKGGSRAFAKVQFADNISADKIITLANNRLYFG 59
Query: 292 RSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQDVCVSFGIGMRKL 471
SYLKA+E++ DIV + RA + + G+ + FGCQ+S KF L S +V + FGIG++K
Sbjct: 60 SSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLGST-EVSIQFGIGLKKF 117
Query: 472 HFSFSWYQKDYRLELSYENIWQ 537
F S DY+L+LSYENIWQ
Sbjct: 118 FFFLSSGSADYKLQLSYENIWQ 139
[27][TOP]
>UniRef100_B9HJH5 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH5_POPTR
Length = 1139
Score = 122 bits (306), Expect = 2e-26
Identities = 65/154 (42%), Positives = 95/154 (61%)
Frame = +1
Query: 76 GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTRL 255
GKTI ++ F ++E++K+FLE +G GTV ++ V Q G R A VQFT+
Sbjct: 41 GKTISLYRFRTVETSEDIKEFLEEYSGDGTVVSVDVDQTISEGSRTKAKVQFTTSE---- 96
Query: 256 IITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQD 435
AA+++ RSYLK +++ DIVP A+ +TI + + FGCQVS +KF LW+ ++
Sbjct: 97 ----AAQKVKL-RSYLKVRDMDYDIVPTRMAAEYTIDNITLHFGCQVSKEKFYALWNKEN 151
Query: 436 VCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
V V FG G RK++ ++ Y+LELSYENIWQ
Sbjct: 152 VSVKFGFGNRKIYLFLTYLSTKYKLELSYENIWQ 185
[28][TOP]
>UniRef100_A2X9D0 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2X9D0_ORYSI
Length = 1067
Score = 121 bits (304), Expect = 3e-26
Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 5/158 (3%)
Frame = +1
Query: 79 KTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKK--GGPRVYAIVQFTSERHTR 252
KT+QV GF SA+ VK LER+ G G VYA+K+R PK R YAIVQF +E H
Sbjct: 4 KTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEEHAS 63
Query: 253 LIITAAAER-LYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSA 429
L+ AA + L G YLK ++DIVP+PR S+ + + + FGC + LWS
Sbjct: 64 LVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKLEDVTLHFGCLLKETILSALWSR 123
Query: 430 QDVCVSFGIGMRKLHFSFSWYQK--DYRLELSYENIWQ 537
V V FG ++K++F +Y+LELSYE+IW+
Sbjct: 124 TGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSYESIWE 161
[29][TOP]
>UniRef100_B9F2V8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9F2V8_ORYSJ
Length = 1027
Score = 120 bits (301), Expect = 6e-26
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 5/158 (3%)
Frame = +1
Query: 79 KTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKK--GGPRVYAIVQFTSERHTR 252
KT+QV GF SA+ VK LER+ G G VYA+K+R PK R YAIVQF +E H
Sbjct: 4 KTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEEHAS 63
Query: 253 LIITAAAER-LYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSA 429
L+ AA + L G YLK ++DIVP+PR S+ + + + FGC + LWS
Sbjct: 64 LVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKLEDVTLHFGCLLKETILSALWSR 123
Query: 430 QDVCVSFGIGMRKLHFSFSWYQK--DYRLELSYENIWQ 537
+ V V FG ++K++F +Y+LELS+E+IW+
Sbjct: 124 KGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSHESIWE 161
[30][TOP]
>UniRef100_A7P3W3 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W3_VITVI
Length = 1076
Score = 119 bits (297), Expect = 2e-25
Identities = 60/124 (48%), Positives = 87/124 (70%), Gaps = 4/124 (3%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+G P+ VSA E+K+FLE+ TG GT+ A++++QPK G +A VQFTS R
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFL----TL 420
LII + A++L+YG +YLKA E++ DI+PKPR LH++ + + FG Q+S ++F +
Sbjct: 61 LII-SLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCLSCENI 119
Query: 421 WSAQ 432
W Q
Sbjct: 120 WQIQ 123
[31][TOP]
>UniRef100_C7F747 Putative RNA-dependent RNA polymerase n=1 Tax=Zea mays
RepID=C7F747_MAIZE
Length = 1108
Score = 116 bits (290), Expect = 1e-24
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKK--GGPRVYAIVQFTSERH 246
+G+TIQV GF SAE VK FLER+ G+GT+ A+K+R P+ R +AI QF S+
Sbjct: 2 VGRTIQVQGFALTDSAEPVKLFLERIAGAGTICALKLRHPRNISANSRAFAIAQFQSQES 61
Query: 247 TRLIITAAAER-LYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLW 423
L+ A L GR YL+ ++DIVP+PR + ++ + + GC V L+
Sbjct: 62 ASLVENATQRLVLKIGRFYLRTRPADRDIVPRPRIPMFSLEDIVLHLGCLVKENILSALF 121
Query: 424 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ 537
A +V V FG M+K++F S+ ++LELSYE+IW+
Sbjct: 122 RASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWE 159
[32][TOP]
>UniRef100_Q6L3W8 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3W8_SOLDE
Length = 1139
Score = 110 bits (274), Expect = 8e-23
Identities = 62/122 (50%), Positives = 84/122 (68%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GFP+ +SAE VK FLE+ TG GTV A++V+Q K+G R +A VQF
Sbjct: 27 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKRGS-RAFAKVQFVDNISAD 85
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E++ DIV + RA + + G+ + FGCQ+S KF L S +
Sbjct: 86 KIINLASKRLYFGSSYLKAWEMKADIV-QLRAYVDHMDGITLNFGCQISDDKFAVLGSTE 144
Query: 433 DV 438
V
Sbjct: 145 VV 146
[33][TOP]
>UniRef100_Q6L447 RNA-directed RNA polymerase-like, putative n=1 Tax=Solanum demissum
RepID=Q6L447_SOLDE
Length = 1137
Score = 109 bits (273), Expect = 1e-22
Identities = 63/122 (51%), Positives = 82/122 (67%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GFP +SAE VK FLE+ TG GTV A++V+Q KGG R +A VQF
Sbjct: 71 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQ-SKGGSRAFAKVQFVDNISAD 129
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E+E DIV + A + + G+ + FGCQ+S KF L S +
Sbjct: 130 KIINLASKRLYFGSSYLKAWELETDIV-QLWAYVDHMDGITLNFGCQISDDKFAVLGSTE 188
Query: 433 DV 438
V
Sbjct: 189 VV 190
[34][TOP]
>UniRef100_Q6L3P6 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P6_SOLDE
Length = 1180
Score = 109 bits (273), Expect = 1e-22
Identities = 63/122 (51%), Positives = 82/122 (67%)
Frame = +1
Query: 73 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 252
MGKTIQV+GFP +SAE VK FLE+ TG GTV A++V+Q KGG R +A VQF
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQ-SKGGSRAFAKVQFVDNISAD 59
Query: 253 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 432
II A++RLY+G SYLKA+E++ DIV RA + + G+ + FGCQ+S KF L S +
Sbjct: 60 KIINLASKRLYFGSSYLKAWEMKTDIV-HLRAYVDHMDGITLNFGCQISDDKFAVLGSTE 118
Query: 433 DV 438
V
Sbjct: 119 VV 120