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[1][TOP]
>UniRef100_Q8L7S8-2 Isoform 2 of DEAD-box ATP-dependent RNA helicase 3 n=1
Tax=Arabidopsis thaliana RepID=Q8L7S8-2
Length = 747
Score = 272 bits (696), Expect = 8e-72
Identities = 139/139 (100%), Positives = 139/139 (100%)
Frame = +3
Query: 87 MASTVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVRRTRRIHSSSLLVPS 266
MASTVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVRRTRRIHSSSLLVPS
Sbjct: 1 MASTVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVRRTRRIHSSSLLVPS 60
Query: 267 AVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKR 446
AVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKR
Sbjct: 61 AVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKR 120
Query: 447 GITHLFPIQRAVLVPALQG 503
GITHLFPIQRAVLVPALQG
Sbjct: 121 GITHLFPIQRAVLVPALQG 139
[2][TOP]
>UniRef100_Q8L7S8 DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Arabidopsis thaliana
RepID=RH3_ARATH
Length = 748
Score = 272 bits (696), Expect = 8e-72
Identities = 139/139 (100%), Positives = 139/139 (100%)
Frame = +3
Query: 87 MASTVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVRRTRRIHSSSLLVPS 266
MASTVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVRRTRRIHSSSLLVPS
Sbjct: 1 MASTVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVRRTRRIHSSSLLVPS 60
Query: 267 AVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKR 446
AVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKR
Sbjct: 61 AVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKR 120
Query: 447 GITHLFPIQRAVLVPALQG 503
GITHLFPIQRAVLVPALQG
Sbjct: 121 GITHLFPIQRAVLVPALQG 139
[3][TOP]
>UniRef100_B9RFT3 Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus
communis RepID=B9RFT3_RICCO
Length = 772
Score = 122 bits (307), Expect = 1e-26
Identities = 83/159 (52%), Positives = 100/159 (62%), Gaps = 21/159 (13%)
Frame = +3
Query: 90 ASTVGVPSLYQVPHLEISKPNSKKRSNCLSL-SLDKPFFTPLSLV------RRTRRIHSS 248
+S +GV S++ P +E+S + K S LS+ + DKP F L L + H
Sbjct: 4 SSVLGVSSIFHTPSVELS--SRKTNSTTLSIPTTDKPHFNSLVLQSCSLYNNKHGHGHGH 61
Query: 249 SLLVPSAVATPNSVLSEEAFKSLG--LSDHDEYDLDGDNNNVEA----DDG--------E 386
S V SA+A PNS+LSEEAFK LG LSD DE D DN++V + DDG +
Sbjct: 62 SSFVTSAIAAPNSILSEEAFKGLGGRLSDFDE---DEDNDDVSSGGYEDDGAGESLPDDD 118
Query: 387 ELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQG 503
ELAISKL LPQRL ESLEKRGITHLFPIQRAVLVPAL+G
Sbjct: 119 ELAISKLGLPQRLVESLEKRGITHLFPIQRAVLVPALEG 157
[4][TOP]
>UniRef100_UPI0001984A30 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984A30
Length = 764
Score = 109 bits (272), Expect = 1e-22
Identities = 73/156 (46%), Positives = 96/156 (61%), Gaps = 18/156 (11%)
Frame = +3
Query: 90 ASTVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVR--RTRRIHSSSL--- 254
+S +GV S+YQ LE+S+ R++ SLSL T L + + TR + +SL
Sbjct: 3 SSIIGVSSVYQTTALELSR-----RTSAHSLSLPFSDKTHLGVFKAPNTRVLSDASLRRS 57
Query: 255 ------LVPSAVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVE-------ADDGEELA 395
VPSA+ATPNSVLSEEAFK LG D D+ +++ + A +ELA
Sbjct: 58 FKQGISFVPSAIATPNSVLSEEAFKGLGGFSKDPLDVTDTDDDYDPEIEASAAAQEDELA 117
Query: 396 ISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQG 503
+++L LP RL ESLE+RGITHLFPIQRAVLVPAL+G
Sbjct: 118 LAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEG 153
[5][TOP]
>UniRef100_A7PRF1 Chromosome chr14 scaffold_27, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PRF1_VITVI
Length = 762
Score = 109 bits (272), Expect = 1e-22
Identities = 73/156 (46%), Positives = 96/156 (61%), Gaps = 18/156 (11%)
Frame = +3
Query: 90 ASTVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVR--RTRRIHSSSL--- 254
+S +GV S+YQ LE+S+ R++ SLSL T L + + TR + +SL
Sbjct: 3 SSIIGVSSVYQTTALELSR-----RTSAHSLSLPFSDKTHLGVFKAPNTRVLSDASLRRS 57
Query: 255 ------LVPSAVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVE-------ADDGEELA 395
VPSA+ATPNSVLSEEAFK LG D D+ +++ + A +ELA
Sbjct: 58 FKQGISFVPSAIATPNSVLSEEAFKGLGGFSKDPLDVTDTDDDYDPEIEASAAAQEDELA 117
Query: 396 ISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQG 503
+++L LP RL ESLE+RGITHLFPIQRAVLVPAL+G
Sbjct: 118 LAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEG 153
[6][TOP]
>UniRef100_A5C4J0 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5C4J0_VITVI
Length = 786
Score = 109 bits (272), Expect = 1e-22
Identities = 73/156 (46%), Positives = 96/156 (61%), Gaps = 18/156 (11%)
Frame = +3
Query: 90 ASTVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVR--RTRRIHSSSL--- 254
+S +GV S+YQ LE+S+ R++ SLSL T L + + TR + +SL
Sbjct: 3 SSIIGVSSVYQTTALELSR-----RTSAHSLSLPFSDKTHLGVFKAPNTRVLSDASLRRS 57
Query: 255 ------LVPSAVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVE-------ADDGEELA 395
VPSA+ATPNSVLSEEAFK LG D D+ +++ + A +ELA
Sbjct: 58 FKQGISFVPSAIATPNSVLSEEAFKGLGGFSKDPLDVTDTDDDYDPEIEASAAAQEDELA 117
Query: 396 ISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQG 503
+++L LP RL ESLE+RGITHLFPIQRAVLVPAL+G
Sbjct: 118 LAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEG 153
[7][TOP]
>UniRef100_Q0DM51-3 Isoform 3 of DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Oryza
sativa Japonica Group RepID=Q0DM51-3
Length = 757
Score = 94.4 bits (233), Expect = 4e-18
Identities = 54/100 (54%), Positives = 66/100 (66%), Gaps = 9/100 (9%)
Frame = +3
Query: 231 RRIHSSSLLVPSAVATPNSVLSEEAFKSLGLSDHDEYDLDG----DNNNVEA-----DDG 383
RR A+A+PNSVLSE AFK L LSD +E + +G D VEA D
Sbjct: 42 RRAGGGRWAAAGAIASPNSVLSEHAFKRLQLSDEEEEEEEGAYGSDEEGVEAVGGGEGDE 101
Query: 384 EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQG 503
+ELAI++L LP++L +LEKRGITHLFPIQRAVL+PAL G
Sbjct: 102 DELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDG 141
[8][TOP]
>UniRef100_Q0DM51 DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Oryza sativa Japonica
Group RepID=RH3_ORYSJ
Length = 758
Score = 94.4 bits (233), Expect = 4e-18
Identities = 54/100 (54%), Positives = 66/100 (66%), Gaps = 9/100 (9%)
Frame = +3
Query: 231 RRIHSSSLLVPSAVATPNSVLSEEAFKSLGLSDHDEYDLDG----DNNNVEA-----DDG 383
RR A+A+PNSVLSE AFK L LSD +E + +G D VEA D
Sbjct: 42 RRAGGGRWAAAGAIASPNSVLSEHAFKRLQLSDEEEEEEEGAYGSDEEGVEAVGGGEGDE 101
Query: 384 EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQG 503
+ELAI++L LP++L +LEKRGITHLFPIQRAVL+PAL G
Sbjct: 102 DELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDG 141
[9][TOP]
>UniRef100_B9N3Y9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N3Y9_POPTR
Length = 735
Score = 93.2 bits (230), Expect = 9e-18
Identities = 60/132 (45%), Positives = 79/132 (59%), Gaps = 19/132 (14%)
Frame = +3
Query: 165 SNCLSLSLDKPFFTPLSLVRRTRRIHSSSLLV--------PSAVATPNSVLSEEAFKSLG 320
S+ LS P F SL+ +T+ SL++ PSA+ATPN +LSEEAFK G
Sbjct: 6 SSASFLSEKPPHFN--SLIAKTQLSFKHSLIINTNSTFTPPSAIATPNPILSEEAFK--G 61
Query: 321 LSDHDEYDLDGDNNN-VEADDGE----------ELAISKLSLPQRLEESLEKRGITHLFP 467
L +++ D D ++ V+ D E EL ISKL LPQRL ++L+ RGITHLFP
Sbjct: 62 LDGFSDFEADADTDDAVDYDSSETEPNSNTSEDELDISKLGLPQRLVQTLQNRGITHLFP 121
Query: 468 IQRAVLVPALQG 503
IQRAVL+P L+G
Sbjct: 122 IQRAVLIPTLEG 133
[10][TOP]
>UniRef100_Q6L724 ATP-dependent RNA helicase n=1 Tax=Hordeum vulgare
RepID=Q6L724_HORVU
Length = 764
Score = 92.0 bits (227), Expect = 2e-17
Identities = 50/86 (58%), Positives = 60/86 (69%), Gaps = 6/86 (6%)
Frame = +3
Query: 264 SAVATPNSVLSEEAFKSLGLS------DHDEYDLDGDNNNVEADDGEELAISKLSLPQRL 425
+A+A+PNSVLSE AFK LGL D D Y D + D +ELAIS+L LP +L
Sbjct: 43 AAIASPNSVLSEHAFKRLGLGAGSDDEDEDGYGSDQEGPAAVEGDKDELAISRLGLPAQL 102
Query: 426 EESLEKRGITHLFPIQRAVLVPALQG 503
+LEKRGITHLFPIQRAVL+PAL+G
Sbjct: 103 VATLEKRGITHLFPIQRAVLIPALEG 128
[11][TOP]
>UniRef100_B9N3Z4 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N3Z4_POPTR
Length = 775
Score = 91.7 bits (226), Expect = 2e-17
Identities = 54/98 (55%), Positives = 66/98 (67%), Gaps = 11/98 (11%)
Frame = +3
Query: 243 SSSLLVPSAVATPNSVLSEEAFKSL-GLSDHDEYDLDGDNNNVEADDGE----------E 389
SSS PSA+A+PNS+LSEEAFK L G SD E D+D +V+ E E
Sbjct: 74 SSSFSPPSAIASPNSILSEEAFKGLDGFSDF-EADVDAGGADVDYASSETEPSSNTSEDE 132
Query: 390 LAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQG 503
L +SKL LP RL ++L+ RGITHLFPIQRAVL+PAL+G
Sbjct: 133 LDVSKLGLPHRLVQTLQNRGITHLFPIQRAVLIPALEG 170
[12][TOP]
>UniRef100_Q2HUZ8 Helicase, C-terminal; Zinc finger, CCHC-type; GUCT n=1 Tax=Medicago
truncatula RepID=Q2HUZ8_MEDTR
Length = 753
Score = 91.3 bits (225), Expect = 3e-17
Identities = 61/144 (42%), Positives = 86/144 (59%), Gaps = 7/144 (4%)
Frame = +3
Query: 93 STVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVRRTRRI---HSSSLLVP 263
+++G + ++P LE+ K K + + S K F+ + R R+ +SS +P
Sbjct: 5 TSIGASTACKLPSLELYK---KHKLTSIPTSSVKFHFSDGNKSRHINRLANFNSSDRFLP 61
Query: 264 SAVATPNS----VLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEE 431
SAVATPNS +LS+EAFK LG S E + + + + + +EL ISKL LP +L +
Sbjct: 62 SAVATPNSSSSSLLSDEAFKGLGSSFDGESEDEDFPSRTTSINADELDISKLDLPSQLVD 121
Query: 432 SLEKRGITHLFPIQRAVLVPALQG 503
SL RGIT LFPIQRAVLVPAL+G
Sbjct: 122 SLRDRGITQLFPIQRAVLVPALEG 145
[13][TOP]
>UniRef100_B8LKW8 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LKW8_PICSI
Length = 802
Score = 89.7 bits (221), Expect = 9e-17
Identities = 69/182 (37%), Positives = 94/182 (51%), Gaps = 43/182 (23%)
Frame = +3
Query: 87 MASTVGVPSLYQVPHLEISKPNSKKRSNCLSLS-------LDKPFFTPLSLVRRTRR--- 236
MAS +GV S Q LE+S+ S LS S +D+ F L + + + +
Sbjct: 1 MASVMGVSSSLQALSLEVSRRVPMPVSGALSSSSSSFLNSVDRGHFLGLPVSKNSTKRTI 60
Query: 237 ------------------------IHSSSLLVPSAVATPNSVLSEEAFKSLGLSD----- 329
+ SS+L +AV++PNS++SEEAFK LGLS
Sbjct: 61 ESLLKRGCTEFHVYEFTKFSPSPGLKSSTLQSSAAVSSPNSIISEEAFKGLGLSSGSSLN 120
Query: 330 -HDEYDLDGDNNN---VEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPAL 497
D+YD + + N V+ +DG L +S L+L Q L E+L RGITHLFPIQRAVLVPAL
Sbjct: 121 LSDDYDYEDEIGNDVVVDNNDGN-LDLSGLNLSQELVEALANRGITHLFPIQRAVLVPAL 179
Query: 498 QG 503
+G
Sbjct: 180 EG 181
[14][TOP]
>UniRef100_B6SSK6 Nucleolar RNA helicase 2 n=1 Tax=Zea mays RepID=B6SSK6_MAIZE
Length = 744
Score = 88.2 bits (217), Expect = 3e-16
Identities = 50/85 (58%), Positives = 58/85 (68%), Gaps = 6/85 (7%)
Frame = +3
Query: 267 AVATPNSVLSEEAFKSLGLSDHDE-----YDLDGDNNNVEAD-DGEELAISKLSLPQRLE 428
A+A+PNSVLSE AFK L L DE Y D D + D EELAI++L LP L
Sbjct: 41 ALASPNSVLSEHAFKRLQLGSDDEDGEGPYGSDADEGFEAGEGDNEELAIARLGLPDELV 100
Query: 429 ESLEKRGITHLFPIQRAVLVPALQG 503
+LEKRGITHLFPIQRAVL+PAL+G
Sbjct: 101 ATLEKRGITHLFPIQRAVLIPALEG 125
[15][TOP]
>UniRef100_B9F737 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9F737_ORYSJ
Length = 697
Score = 84.7 bits (208), Expect = 3e-15
Identities = 54/114 (47%), Positives = 66/114 (57%), Gaps = 23/114 (20%)
Frame = +3
Query: 231 RRIHSSSLLVPSAVATPNSVLSEEAFKSLGLSDHDEYDLDG----DNNNVEA-----DDG 383
RR A+A+PNSVLSE AFK L LSD +E + +G D VEA D
Sbjct: 42 RRAGGGRWAAAGAIASPNSVLSEHAFKRLQLSDEEEEEEEGAYGSDEEGVEAVGGGEGDE 101
Query: 384 EELAISKLSLPQRLEESLEKRGITHLFPIQ--------------RAVLVPALQG 503
+ELAI++L LP++L +LEKRGITHLFPIQ RAVL+PAL G
Sbjct: 102 DELAIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDG 155
[16][TOP]
>UniRef100_B8AMQ6 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AMQ6_ORYSI
Length = 779
Score = 79.7 bits (195), Expect = 1e-13
Identities = 55/121 (45%), Positives = 65/121 (53%), Gaps = 30/121 (24%)
Frame = +3
Query: 231 RRIHSSSLLVPSAVATPNSVLSEEAFKSLGLSDHDE-----YDLD------GDNNNVEA- 374
RR A+A+PNSVLSE AFK L LSD +E Y D D VEA
Sbjct: 42 RRAGGGRWAAAGAIASPNSVLSEHAFKRLQLSDEEEEEEGAYGSDEEGAYGSDEEGVEAV 101
Query: 375 ----DDGEELAISKLSLPQRLEESLEKRGITHLFPIQ--------------RAVLVPALQ 500
D +ELAI++L LP++L +LEKRGITHLFPIQ RAVL+PAL
Sbjct: 102 GGGEGDEDELAIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALD 161
Query: 501 G 503
G
Sbjct: 162 G 162
[17][TOP]
>UniRef100_A9RFR6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RFR6_PHYPA
Length = 793
Score = 71.2 bits (173), Expect = 3e-11
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 10/90 (11%)
Frame = +3
Query: 264 SAVATPNSVLSEEAFKSLGLS-----DHDEYDLDGDN-----NNVEADDGEELAISKLSL 413
+AVAT V + S G S + DE D+D D +N DDG+ELAIS+L +
Sbjct: 85 NAVATDFLVAQKGRAGSFGYSRGTDSEEDESDIDDDAEVIRVDNESMDDGDELAISRLGI 144
Query: 414 PQRLEESLEKRGITHLFPIQRAVLVPALQG 503
P + ++L KRGIT LFPIQRAVL PA+QG
Sbjct: 145 PDAVADALAKRGITQLFPIQRAVLEPAMQG 174
[18][TOP]
>UniRef100_B9N3Z1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N3Z1_POPTR
Length = 377
Score = 62.8 bits (151), Expect = 1e-08
Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Frame = +3
Query: 213 SLVRRTRRIHSS----SLLVPSAVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVEADD 380
SL+ +T+ I ++ S + SA++TPNS+L++ L D+ + D N+ +
Sbjct: 15 SLIDKTQFITTTATSISSFILSAISTPNSILAQNT----QLDDNFKDGTDALNHETTRPN 70
Query: 381 GEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQG 503
++L IS L LPQRL ++L +GIT LF IQRAVLVPAL+G
Sbjct: 71 -DQLDISNLCLPQRLIQTLHTQGITILFTIQRAVLVPALEG 110
[19][TOP]
>UniRef100_A9S7H7 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9S7H7_PHYPA
Length = 689
Score = 60.1 bits (144), Expect = 8e-08
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = +3
Query: 264 SAVATPNSVLSEEAFKSLGLSDHDEYDLDGDN---NNVEADDGEELAISKLSLPQRLEES 434
SA+AT + S F D DE+D + + +N DD +ELA++ L +PQ + ++
Sbjct: 4 SAIATDYA--STSIFGLTDGLDTDEFDDEEEIIRVDNESVDDEDELAVANLGIPQAVVDA 61
Query: 435 LEKRGITHLFPIQRAVLVPALQG 503
L KRGI LFPIQRAVL PA+QG
Sbjct: 62 LAKRGIEKLFPIQRAVLDPAMQG 84
[20][TOP]
>UniRef100_A9RFT8 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9RFT8_PHYPA
Length = 638
Score = 53.9 bits (128), Expect = 6e-06
Identities = 31/61 (50%), Positives = 37/61 (60%)
Frame = +3
Query: 321 LSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQ 500
LS DE G N D ELAI L + + + +L KRGITHLFPIQRAVL PA++
Sbjct: 5 LSSSDEEGFVGKKNAGAGKD--ELAIDSLGVSEDIVNALAKRGITHLFPIQRAVLEPAMK 62
Query: 501 G 503
G
Sbjct: 63 G 63
[21][TOP]
>UniRef100_A9T4H8 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9T4H8_PHYPA
Length = 619
Score = 53.5 bits (127), Expect = 7e-06
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +3
Query: 384 EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQG 503
+ELAI+ L + + + E+L KRGITHLFPIQRAVL PA++G
Sbjct: 2 DELAINSLGVSEDIVEALAKRGITHLFPIQRAVLEPAMKG 41