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[1][TOP]
>UniRef100_Q6LAJ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arabidopsis thaliana
RepID=Q6LAJ6_ARATH
Length = 282
Score = 368 bits (944), Expect = e-100
Identities = 184/184 (100%), Positives = 184/184 (100%)
Frame = +3
Query: 3 ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS 182
ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS
Sbjct: 7 ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS 66
Query: 183 LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ 362
LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ
Sbjct: 67 LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ 126
Query: 363 DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK 542
DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK
Sbjct: 127 DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK 186
Query: 543 EMCE 554
EMCE
Sbjct: 187 EMCE 190
[2][TOP]
>UniRef100_Q3EBU8 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q3EBU8_ARATH
Length = 895
Score = 368 bits (944), Expect = e-100
Identities = 184/184 (100%), Positives = 184/184 (100%)
Frame = +3
Query: 3 ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS 182
ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS
Sbjct: 7 ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS 66
Query: 183 LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ 362
LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ
Sbjct: 67 LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ 126
Query: 363 DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK 542
DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK
Sbjct: 127 DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK 186
Query: 543 EMCE 554
EMCE
Sbjct: 187 EMCE 190
[3][TOP]
>UniRef100_Q0WWN0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arabidopsis thaliana
RepID=Q0WWN0_ARATH
Length = 786
Score = 368 bits (944), Expect = e-100
Identities = 184/184 (100%), Positives = 184/184 (100%)
Frame = +3
Query: 3 ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS 182
ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS
Sbjct: 7 ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS 66
Query: 183 LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ 362
LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ
Sbjct: 67 LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ 126
Query: 363 DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK 542
DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK
Sbjct: 127 DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK 186
Query: 543 EMCE 554
EMCE
Sbjct: 187 EMCE 190
[4][TOP]
>UniRef100_O24600 DNA-directed RNA polymerase 3, chloroplastic n=2 Tax=Arabidopsis
thaliana RepID=RPOT3_ARATH
Length = 993
Score = 368 bits (944), Expect = e-100
Identities = 184/184 (100%), Positives = 184/184 (100%)
Frame = +3
Query: 3 ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS 182
ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS
Sbjct: 7 ASPSLSLNPTSHFQHQTSLVTWLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTS 66
Query: 183 LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ 362
LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ
Sbjct: 67 LSVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQ 126
Query: 363 DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK 542
DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK
Sbjct: 127 DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK 186
Query: 543 EMCE 554
EMCE
Sbjct: 187 EMCE 190
[5][TOP]
>UniRef100_B9SQY6 DNA-directed RNA polymerase 3B, chloroplast, putative n=1
Tax=Ricinus communis RepID=B9SQY6_RICCO
Length = 1000
Score = 115 bits (287), Expect = 3e-24
Identities = 75/184 (40%), Positives = 107/184 (58%), Gaps = 10/184 (5%)
Frame = +3
Query: 33 SHFQHQTSLVTWLKPPPSSALFRR--KTLPFFERHSLPISASSSSSSSSSTSLSVHEKPI 206
+ FQ+Q W PP ++ K L F S+P S S ++S SS+S + K
Sbjct: 5 AQFQYQN----WPTKPPKITKTQKNHKNLHFL---SVPTSHSLFTNSLSSSSFPLITKFP 57
Query: 207 SNSVHFHG--NLIESFENQD--SSYAGTIKGASLIEELENPVERNGL----SGRRRLFMQ 362
N + FH + +E +D + G + + +L+ P N RR+F+Q
Sbjct: 58 RNLLPFHPLHDAVEEHLLEDLVENPIGNHQKLETLIKLDLPTNHNHQVLPEESSRRVFIQ 117
Query: 363 DPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEK 542
DPPWISALF KGL K+ ++ +K+E KDI+KRK++ LRRRQ++EETEAWERMV+EY+ L K
Sbjct: 118 DPPWISALFFKGLYKIPNKEVKLEFKDIEKRKYNLLRRRQIREETEAWERMVEEYKALVK 177
Query: 543 EMCE 554
EMCE
Sbjct: 178 EMCE 181
[6][TOP]
>UniRef100_B9HB51 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HB51_POPTR
Length = 982
Score = 104 bits (259), Expect = 5e-21
Identities = 62/145 (42%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
Frame = +3
Query: 129 HSLPISASSSSSSSSSTSLSVHEKPIS-NSVH--FHGNLIESFENQDSSYAGTIKGASLI 299
HSL + SSSS + LS+ P+ + +H H L+E FE TI +
Sbjct: 38 HSLSNPSLSSSSFPLNPKLSILNPPLLFHPLHDSSHDRLLEDFE------IPTINNHQKL 91
Query: 300 EELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRR 479
E L + +R+F++D PWISAL+ KG K+ ++ +K+E KDI+KRK++ LRRR
Sbjct: 92 ETLIKFDQIVHGESSKRVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRR 151
Query: 480 QVKEETEAWERMVDEYRDLEKEMCE 554
Q++EETEAWERM +EY L KEMCE
Sbjct: 152 QIREETEAWERMAEEYTGLVKEMCE 176
[7][TOP]
>UniRef100_B9IMA6 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9IMA6_POPTR
Length = 882
Score = 102 bits (254), Expect = 2e-20
Identities = 44/70 (62%), Positives = 60/70 (85%)
Frame = +3
Query: 345 RRLFMQDPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDE 524
+++F+QDPPWISA F KG+ K+ ++ +K+E KDI+KRK++ LRRRQ++EETEAWERM DE
Sbjct: 7 KKVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADE 66
Query: 525 YRDLEKEMCE 554
YR L +EMCE
Sbjct: 67 YRGLVREMCE 76
[8][TOP]
>UniRef100_B9NFY8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9NFY8_POPTR
Length = 160
Score = 96.7 bits (239), Expect = 1e-18
Identities = 42/70 (60%), Positives = 58/70 (82%)
Frame = +3
Query: 345 RRLFMQDPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDE 524
+R+F++D PWISAL+ KG K+ ++ +K+E KDI+KRK++ LRRRQ++EETEAWERM +E
Sbjct: 1 KRVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERMAEE 60
Query: 525 YRDLEKEMCE 554
Y L KEMCE
Sbjct: 61 YTGLVKEMCE 70
[9][TOP]
>UniRef100_P69243 DNA-directed RNA polymerase 3A, chloroplastic n=2 Tax=Nicotiana
RepID=RPO3A_TOBAC
Length = 977
Score = 90.1 bits (222), Expect = 1e-16
Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 17/176 (9%)
Frame = +3
Query: 78 PPSSALFRRKTLP----FFERHSLPISASSSSSSSSSTS------LSVHEKPISNSVHFH 227
P ++ +R + LP F+ H+ S SSS ++S L V + PI+N++
Sbjct: 9 PSPTSQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLPTSSFPKTLKLPVIQMPINNNIQSQ 68
Query: 228 GNLIESFENQDSSYAGTIKGASLIEELENPVE-RNGL---SGRRRLFMQDPPWISALFLK 395
+ S + +EEL N + NG+ +R+F+QDPPW+S+LF+
Sbjct: 69 TTVCVSTDEN-------------LEELVNLQKIANGVLTKESNKRVFIQDPPWVSSLFMN 115
Query: 396 GLSKMVDQTLKIER--KDIDKRK-FDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 554
L Q + R ++I++R+ + LRRRQ+K ETEAWE+MV+EYR+LE+EMCE
Sbjct: 116 SLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCE 171
[10][TOP]
>UniRef100_A7PFM9 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7PFM9_VITVI
Length = 979
Score = 88.6 bits (218), Expect = 3e-16
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 7/167 (4%)
Frame = +3
Query: 75 PPPSSALFRRKTLPFFERH-SLPISASSSSSSSSSTSLSVHEKPISNSVHFHGNLIESFE 251
P P + + + K L + H +LP+ +S+ S TS ++ + +S+S H S
Sbjct: 9 PIPHAKIQKPKKLDHHKPHRTLPVLFTSNPSPHFHTS-TISKNSLSSSSFRHNFHSPSHS 67
Query: 252 NQDSSYAGTIKGASLIEELENPVERNGLSGRR---RLFMQDPPWISALFLKGL---SKMV 413
+ + + + +E + + + + R+F+QDPPWIS+ ++
Sbjct: 68 SNSEAQCHALPLSPTNNSIETLQDSSNIQVKESIPRIFVQDPPWISSFLFHDWCERNRRT 127
Query: 414 DQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 554
Q +K+E ++ ++R + LRRRQVK ETEAWERMV+EYR++E+EMCE
Sbjct: 128 GQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCE 174
[11][TOP]
>UniRef100_A5B3H8 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B3H8_VITVI
Length = 1312
Score = 88.6 bits (218), Expect = 3e-16
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 7/167 (4%)
Frame = +3
Query: 75 PPPSSALFRRKTLPFFERH-SLPISASSSSSSSSSTSLSVHEKPISNSVHFHGNLIESFE 251
P P + + + K L + H +LP+ +S+ S TS ++ + +S+S H S
Sbjct: 9 PIPHAKIQKPKKLDHHKPHRTLPVLFTSNPSPHFHTS-TISKNSLSSSSFRHNFHSPSHS 67
Query: 252 NQDSSYAGTIKGASLIEELENPVERNGLSGRR---RLFMQDPPWISALFLKGL---SKMV 413
+ + + + +E + + + + R+F+QDPPWIS+ ++
Sbjct: 68 SNSEAQCHALPLSPTNNSIETLQDSSNIQVKESIPRIFVQDPPWISSFLFHDWCERNRRT 127
Query: 414 DQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 554
Q +K+E ++ ++R + LRRRQVK ETEAWERMV+EYR++E+EMCE
Sbjct: 128 GQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCE 174
[12][TOP]
>UniRef100_Q52GZ3 DNA-directed RNA polymerase n=1 Tax=Spinacia oleracea
RepID=Q52GZ3_SPIOL
Length = 989
Score = 87.8 bits (216), Expect = 5e-16
Identities = 55/150 (36%), Positives = 85/150 (56%), Gaps = 8/150 (5%)
Frame = +3
Query: 123 ERHSLPISASSSSSSSSSTSLSVHEKPISNSVHFHGN-----LIESFENQDSSYAGTIKG 287
E P S+SSS+S S+ SL + + F + +++S E +
Sbjct: 49 EHPLFPSSSSSSNSFPSTLSLPSLTPKLGKTSFFQPSPQSQIILDSPEEE---------- 98
Query: 288 ASLIEELENPVERNG-LSGRRRLFMQDPPWISALFLKGLSKMVDQT--LKIERKDIDKRK 458
L E+++ + + G R+FMQDPPW++ LF+KGL VD L++E K+I++ K
Sbjct: 99 --LAEKMDGHFRNSDKIKGSSRIFMQDPPWVNTLFMKGL---VDSNTGLRLEFKEIEREK 153
Query: 459 FDSLRRRQVKEETEAWERMVDEYRDLEKEM 548
++ LRRRQ+K ETEAWE MV+EYR+ +EM
Sbjct: 154 YNLLRRRQIKAETEAWESMVEEYREFVREM 183
[13][TOP]
>UniRef100_Q8L6J1 DNA-directed RNA polymerase 3B, chloroplastic n=1 Tax=Nicotiana
tabacum RepID=RPO3B_TOBAC
Length = 977
Score = 87.8 bits (216), Expect = 5e-16
Identities = 64/171 (37%), Positives = 98/171 (57%), Gaps = 12/171 (7%)
Frame = +3
Query: 78 PPSSALFRRKTLP----FFERHSLPISASSSSSSSSSTSLSVHEK-PISNSVHFHGNLIE 242
P ++ +R + LP F+ H+ S SSS S++S K P+ +H N I+
Sbjct: 9 PSPTSQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLSTSSFPKTLKLPV---IHMPINNIQ 65
Query: 243 SFENQDSSYAGTIKGASLIEELENPVE-RNGLSGR---RRLFMQDPPWISALFLKGLSKM 410
S Q + T + +EEL N + NG + +R+F+QDPPW+S+LF+ L
Sbjct: 66 S---QTTVCVSTDEN---LEELVNLQKIPNGFLNKESNKRVFIQDPPWVSSLFMNSLFVR 119
Query: 411 VDQTLKIER--KDIDKRK-FDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 554
Q + R ++I++R+ + LRRRQ+K ETEAWE+MV+EYR+LE+EMCE
Sbjct: 120 AKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCE 170