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[1][TOP]
>UniRef100_Q9LQV2 F10B6.19 n=1 Tax=Arabidopsis thaliana RepID=Q9LQV2_ARATH
Length = 1107
Score = 400 bits (1028), Expect = e-110
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +1
Query: 1 QPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYA 180
QPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYA
Sbjct: 185 QPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYA 244
Query: 181 EHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDF 360
EHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDF
Sbjct: 245 EHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDF 304
Query: 361 YRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGL 540
YRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGL
Sbjct: 305 YRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGL 364
Query: 541 VYMYRVQVTPA 573
VYMYRVQVTPA
Sbjct: 365 VYMYRVQVTPA 375
[2][TOP]
>UniRef100_Q8H1K9 RNA-dependent RNA polymerase 1 n=1 Tax=Arabidopsis thaliana
RepID=Q8H1K9_ARATH
Length = 1107
Score = 400 bits (1028), Expect = e-110
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +1
Query: 1 QPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYA 180
QPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYA
Sbjct: 185 QPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYA 244
Query: 181 EHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDF 360
EHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDF
Sbjct: 245 EHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDF 304
Query: 361 YRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGL 540
YRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGL
Sbjct: 305 YRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGL 364
Query: 541 VYMYRVQVTPA 573
VYMYRVQVTPA
Sbjct: 365 VYMYRVQVTPA 375
[3][TOP]
>UniRef100_B2B9K0 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B2B9K0_GOSHI
Length = 1110
Score = 213 bits (541), Expect = 1e-53
Identities = 103/183 (56%), Positives = 135/183 (73%)
Frame = +1
Query: 25 IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 204
+++++ D D+QW+RTTDFT S+CIGQS+ CLELP +L +P+FRENFA Y E+ +
Sbjct: 194 LLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGR-LV 252
Query: 205 IESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKK 384
+ESGSSYS N + LVP+V P LPFEILFK+N LVQN C+ GPALD FYRL++ +
Sbjct: 253 LESGSSYSCNLS-LVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCR 311
Query: 385 YDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQV 564
+ IDH LEKL++L ECCYEP+ WL +EYK + K SPTISLD+GLVY+ RVQ+
Sbjct: 312 MHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQI 371
Query: 565 TPA 573
TP+
Sbjct: 372 TPS 374
[4][TOP]
>UniRef100_B3SND7 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B3SND7_GOSHI
Length = 1110
Score = 208 bits (530), Expect = 2e-52
Identities = 102/183 (55%), Positives = 134/183 (73%)
Frame = +1
Query: 25 IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 204
+++++ D D+QW+RTTDFT S+CIGQS+ LELP +L +P+FRENFA Y E+ +
Sbjct: 194 LLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGR-LV 252
Query: 205 IESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKK 384
+ESGSSYS N + LVP+V P LPFEILFK+N LVQN C+ GPALD FYRL++ +
Sbjct: 253 LESGSSYSCNLS-LVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCR 311
Query: 385 YDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQV 564
+ IDH LEKL++L ECCYEP+ WL +EYK + K SPTISLD+GLVY+ RVQ+
Sbjct: 312 MHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQI 371
Query: 565 TPA 573
TP+
Sbjct: 372 TPS 374
[5][TOP]
>UniRef100_A7P3W5 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W5_VITVI
Length = 1121
Score = 207 bits (526), Expect = 6e-52
Identities = 99/179 (55%), Positives = 131/179 (73%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
++ + D+QW+R DFT S IGQS A CLELP +P+FRENFA Y E+ F++ES
Sbjct: 190 YFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGK-FILES 248
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
GSSYS N + LVP++ PP G SLPF+ILFK+NTLVQN CLSGP LD F+RL++ +++
Sbjct: 249 GSSYSHNLH-LVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPI 307
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
+ I+H LEKL+HL ECCYEP WL ++Y+ ++ K + SP ISLD GLVY+ RVQ+TP
Sbjct: 308 SFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKK-PVAGSPAISLDTGLVYVRRVQITP 365
[6][TOP]
>UniRef100_B9HJH7 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH7_POPTR
Length = 1133
Score = 201 bits (511), Expect = 3e-50
Identities = 93/182 (51%), Positives = 132/182 (72%)
Frame = +1
Query: 25 IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 204
+++++ D DEQW+RTTDFT S IG S++ CLELP HL +P+F ENF Y E+ + F+
Sbjct: 195 LLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGT-FV 253
Query: 205 IESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKK 384
+ESG ++S N + LVP+V P G +LP+ ILF++N LVQN CL+G LD FYRL++ +
Sbjct: 254 LESGLTFSRNPD-LVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDPNR 312
Query: 385 YDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQV 564
I++ LEKL+HL ECCYEP+ W ++YKK+++ G P SP +SLD GLVY+Y+VQ+
Sbjct: 313 MPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQI 372
Query: 565 TP 570
TP
Sbjct: 373 TP 374
[7][TOP]
>UniRef100_UPI000198295F PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI000198295F
Length = 1109
Score = 200 bits (509), Expect = 6e-50
Identities = 96/181 (53%), Positives = 134/181 (74%)
Frame = +1
Query: 28 MDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLI 207
+ ++ + D+QW+R DFT S IGQS+A CLELP +P+F ENFA Y E+ F++
Sbjct: 186 LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKENDRK-FIL 244
Query: 208 ESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKY 387
ESG+S+S N + LVP+V PP G +LPF+ILFK+NTLVQN CLSGP LD +F+R ++ ++
Sbjct: 245 ESGASFSGNLH-LVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDPQRI 303
Query: 388 DRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVT 567
+ + I+H LEKL++L ECCYEP WL ++Y+ +ISK ++ SP ISLD GLVY+ RVQ+T
Sbjct: 304 NISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISK-QVAGSPAISLDTGLVYVRRVQIT 362
Query: 568 P 570
P
Sbjct: 363 P 363
[8][TOP]
>UniRef100_A7P3W3 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W3_VITVI
Length = 1076
Score = 200 bits (509), Expect = 6e-50
Identities = 96/181 (53%), Positives = 134/181 (74%)
Frame = +1
Query: 28 MDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLI 207
+ ++ + D+QW+R DFT S IGQS+A CLELP +P+F ENFA Y E+ F++
Sbjct: 153 LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKENDRK-FIL 211
Query: 208 ESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKY 387
ESG+S+S N + LVP+V PP G +LPF+ILFK+NTLVQN CLSGP LD +F+R ++ ++
Sbjct: 212 ESGASFSGNLH-LVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDPQRI 270
Query: 388 DRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVT 567
+ + I+H LEKL++L ECCYEP WL ++Y+ +ISK ++ SP ISLD GLVY+ RVQ+T
Sbjct: 271 NISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISK-QVAGSPAISLDTGLVYVRRVQIT 329
Query: 568 P 570
P
Sbjct: 330 P 330
[9][TOP]
>UniRef100_B9HVU2 Rna-dependent RNA polymerase (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9HVU2_POPTR
Length = 1102
Score = 190 bits (483), Expect = 6e-47
Identities = 89/180 (49%), Positives = 128/180 (71%), Gaps = 2/180 (1%)
Frame = +1
Query: 37 YSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESG 216
+ + +D+QWIR DF+ S CIGQS+A CLELP + +P+F+ENF Y E F++E G
Sbjct: 194 FKEATDDQWIRDVDFSPSYCIGQSSALCLELPPNSQLPNFQENFVCYKEDEGH-FILEKG 252
Query: 217 SSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYD-- 390
S++ ++ LVP++ LP++I+FK+N+LVQ+ CL GPALD F+RL+N K
Sbjct: 253 STFCCKSD-LVPILSAAQVSELPYDIVFKVNSLVQHGCLPGPALDARFFRLINPSKIRIA 311
Query: 391 RALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I H LEKL HL ECCY+PA WLR++Y+K+++ G+LP P I++DDGLV++ RVQ+TP
Sbjct: 312 HAYIQHALEKLSHLKECCYDPARWLREQYQKYLTTGRLPTPPAIAVDDGLVFLRRVQITP 371
[10][TOP]
>UniRef100_B9HJH5 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH5_POPTR
Length = 1139
Score = 183 bits (465), Expect = 7e-45
Identities = 89/185 (48%), Positives = 123/185 (66%)
Frame = +1
Query: 16 LFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRAS 195
+ G +D+QW+R DF+ S CIGQS+A CLELP +P+F+ENF Y E
Sbjct: 203 MLGAAKILKKDTDDQWVRDVDFSPSYCIGQSSALCLELPRSGQLPNFQENFPCYKEDEGR 262
Query: 196 SFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLN 375
FL E GS++ + LVP++ G LP++I+FK+N+LVQ+ L GPALD FYRL+N
Sbjct: 263 FFL-EVGSTFC-RVSDLVPILREAQGIELPYDIVFKVNSLVQHGYLPGPALDASFYRLIN 320
Query: 376 QKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYR 555
+ + A I + LEKL H ECCY+P WLR+EY+K IS G+LP P +++DDGLV++ R
Sbjct: 321 PSRVNIAHIQNALEKLHHSMECCYDPVRWLREEYRKCISTGRLPTPPAVAVDDGLVHVRR 380
Query: 556 VQVTP 570
VQ+TP
Sbjct: 381 VQITP 385
[11][TOP]
>UniRef100_Q9ZR58 RNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum
RepID=Q9ZR58_SOLLC
Length = 1114
Score = 169 bits (429), Expect = 1e-40
Identities = 79/179 (44%), Positives = 124/179 (69%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDF S IG S++ CL+ + +P+F E+F +YAE + L
Sbjct: 187 FFKETPDDQWVRTTDFPPS-WIGLSSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTG 245
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G S+P++ILFK+++LVQ+ C+ GPAL++ F+RL++ ++ +
Sbjct: 246 FTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPRRRNV 305
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+H LEKL+++ ECCY+P WL ++Y ++ + P SP+I+LDDGLVY+ RV VTP
Sbjct: 306 ACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 364
[12][TOP]
>UniRef100_Q6L3V2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum
demissum RepID=Q6L3V2_SOLDE
Length = 963
Score = 169 bits (427), Expect = 2e-40
Identities = 79/179 (44%), Positives = 126/179 (70%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDFT S IG S++ CL+ +++P+F+E+F +YAE + L
Sbjct: 35 FFKETPDDQWVRTTDFTPS-WIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 93
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G ++P++ILFK+++LVQ+ C+ GPAL++ F+RL++ ++ +
Sbjct: 94 FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNV 153
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y ++ + P SP+I+LDDGLVY+ RV VTP
Sbjct: 154 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 212
[13][TOP]
>UniRef100_A4UV17 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV17_SOLTU
Length = 1115
Score = 169 bits (427), Expect = 2e-40
Identities = 79/179 (44%), Positives = 126/179 (70%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDFT S IG S++ CL+ +++P+F+E+F +YAE + L
Sbjct: 187 FFKETPDDQWVRTTDFTPS-WIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 245
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G ++P++ILFK+++LVQ+ C+ GPAL++ F+RL++ ++ +
Sbjct: 246 FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNV 305
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y ++ + P SP+I+LDDGLVY+ RV VTP
Sbjct: 306 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 364
[14][TOP]
>UniRef100_Q6L447 RNA-directed RNA polymerase-like, putative n=1 Tax=Solanum demissum
RepID=Q6L447_SOLDE
Length = 1137
Score = 168 bits (425), Expect = 3e-40
Identities = 79/179 (44%), Positives = 125/179 (69%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDFT S IG S++ CL+ +++P+F+E+F +YAE + L
Sbjct: 223 FFKETPDDQWVRTTDFTPS-WIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 281
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G ++P++ILFK+++LVQ+ C+ GPAL++ F+RL++ ++ +
Sbjct: 282 FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNV 341
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y + + P SP+I+LDDGLVY+ RV VTP
Sbjct: 342 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTP 400
[15][TOP]
>UniRef100_A4UV18 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV18_SOLTU
Length = 935
Score = 168 bits (425), Expect = 3e-40
Identities = 79/179 (44%), Positives = 125/179 (69%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDFT S IG S++ CL+ +++P+F+E+F +YAE + L
Sbjct: 187 FFKETPDDQWVRTTDFTPS-WIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 245
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G ++P++ILFK+++LVQ+ C+ GPAL++ F+RL++ ++ +
Sbjct: 246 FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNV 305
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y + + P SP+I+LDDGLVY+ RV VTP
Sbjct: 306 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTP 364
[16][TOP]
>UniRef100_Q6L3W8 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3W8_SOLDE
Length = 1139
Score = 167 bits (424), Expect = 4e-40
Identities = 78/179 (43%), Positives = 125/179 (69%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDF + S IG S++ CL+ +++P+F+E+F +Y E + L
Sbjct: 179 FFKETPDDQWVRTTDF-APSWIGLSSSLCLQFRRGVHLPNFQESFFHYTERENNITLQTG 237
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G ++P++ILFK+++LVQ+ C+ GPALD+ F+RL++ ++ +
Sbjct: 238 FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALDVYFFRLVDPQRRNV 297
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y ++ + P SP+I+LDDGLVY+ RV VTP
Sbjct: 298 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 356
[17][TOP]
>UniRef100_C1I213 RNA-dependent RNA polymerase n=1 Tax=Nicotiana glutinosa
RepID=C1I213_NICGU
Length = 1117
Score = 167 bits (424), Expect = 4e-40
Identities = 80/181 (44%), Positives = 127/181 (70%), Gaps = 2/181 (1%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDFT S IG S++ CLE + +P+F E+F Y E A+ ++++
Sbjct: 187 FFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFHNGVRLPNFSESFFYYKES-ANQVILQT 244
Query: 214 GS--SYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKY 387
G S+S LVP+V P G LP++ILFK+++L+Q+ C G AL+ +F++L++ ++
Sbjct: 245 GFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRR 304
Query: 388 DRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVT 567
+ A I+H LEKL++L ECCY+P WL ++Y +++ + +LP SP+I+LDDGLVY+ RV VT
Sbjct: 305 NIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVLVT 364
Query: 568 P 570
P
Sbjct: 365 P 365
[18][TOP]
>UniRef100_Q0KIR2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum
demissum RepID=Q0KIR2_SOLDE
Length = 963
Score = 167 bits (423), Expect = 5e-40
Identities = 78/179 (43%), Positives = 126/179 (70%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDF + S IG S++ CL+ +++P+F+E F +YAE + L
Sbjct: 35 FFKETPDDQWVRTTDF-APSWIGLSSSLCLQFRRGVHLPNFQEKFFHYAERENNITLQTG 93
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S ++LVP V PP G ++P++ILFK+++LVQ+ C+ GPAL++ F+RL++ ++ +
Sbjct: 94 FTFFISQKSSLVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNV 153
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y ++ + P SP+I+LDDGLVY+ RV VTP
Sbjct: 154 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 212
[19][TOP]
>UniRef100_Q9ZRY7 RNA-directed RNA polymerase n=1 Tax=Nicotiana tabacum
RepID=Q9ZRY7_TOBAC
Length = 1116
Score = 167 bits (422), Expect = 7e-40
Identities = 80/180 (44%), Positives = 126/180 (70%), Gaps = 1/180 (0%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDFT S IG S++ CLE + +P+F E+F Y E + F++++
Sbjct: 187 FFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFRNGVQLPNFSESFFYYKESM-NQFILQT 244
Query: 214 GSSYS-SNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYD 390
G ++S S LVP+V P G LP++ILFK+++L+Q+ C G AL+ +F++L++ ++ +
Sbjct: 245 GFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRN 304
Query: 391 RALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+H LEKL++L ECCY+P WL ++Y +++ +LP SP I+LDDGLVY+ RV VTP
Sbjct: 305 IACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTP 364
[20][TOP]
>UniRef100_Q6L3P6 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P6_SOLDE
Length = 1180
Score = 166 bits (420), Expect = 1e-39
Identities = 78/179 (43%), Positives = 124/179 (69%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDF + S IG S++ CL+ +++P+F+E F +Y E + L
Sbjct: 153 FFKETPDDQWVRTTDF-APSWIGLSSSLCLQFRRGVHLPNFQEIFFHYTERENNITLQTG 211
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G ++P++ILFK+++LVQ+ C+ GPALD+ F+RL++ ++ +
Sbjct: 212 FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALDVYFFRLVDPQRRNV 271
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y ++ + P SP+I+LDDGLVY+ RV VTP
Sbjct: 272 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 330
[21][TOP]
>UniRef100_Q6L3P3 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P3_SOLDE
Length = 1021
Score = 166 bits (420), Expect = 1e-39
Identities = 77/179 (43%), Positives = 126/179 (70%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDF + S IG S++ CL+ +++P+F+E+F +YAE + L
Sbjct: 35 FFKETPDDQWVRTTDF-APSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 93
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G ++P++ILFK+++LVQ+ C+ GP+L++ F+RL++ ++ +
Sbjct: 94 FTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNV 153
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y ++ + P SP+I+LDDGLVY+ RV VTP
Sbjct: 154 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 212
[22][TOP]
>UniRef100_Q0KIK9 RNA-directed RNA polymerase, putative n=1 Tax=Solanum tuberosum
RepID=Q0KIK9_SOLTU
Length = 1050
Score = 166 bits (420), Expect = 1e-39
Identities = 77/179 (43%), Positives = 126/179 (70%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDF + S IG S++ CL+ +++P+F+E+F +YAE + L
Sbjct: 35 FFKETPDDQWVRTTDF-APSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 93
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G ++P++ILFK+++LVQ+ C+ GP+L++ F+RL++ ++ +
Sbjct: 94 FTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNV 153
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y ++ + P SP+I+LDDGLVY+ RV VTP
Sbjct: 154 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 212
[23][TOP]
>UniRef100_A4UV46 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV46_SOLTU
Length = 1065
Score = 166 bits (420), Expect = 1e-39
Identities = 77/179 (43%), Positives = 126/179 (70%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDF + S IG S++ CL+ +++P+F+E+F +YAE + L
Sbjct: 186 FFKETPDDQWVRTTDF-APSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 244
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G ++P++ILFK+++LVQ+ C+ GP+L++ F+RL++ ++ +
Sbjct: 245 FTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNV 304
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y ++ + P SP+I+LDDGLVY+ RV VTP
Sbjct: 305 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 363
[24][TOP]
>UniRef100_A4UV44 Putative RNA-dependent RNA-polymerase (Fragment) n=1 Tax=Solanum
tuberosum RepID=A4UV44_SOLTU
Length = 841
Score = 166 bits (419), Expect = 2e-39
Identities = 77/179 (43%), Positives = 125/179 (69%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDF + S IG S++ CL+ +++P+F+E+F +Y E + L
Sbjct: 187 FFKETPDDQWVRTTDF-APSWIGLSSSLCLQFRRGVHLPNFQESFFHYTERENNITLQTG 245
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
+ + S + LVP V PP G ++P++ILFK+++LVQ+ C+ GPAL++ F+RL++ ++ +
Sbjct: 246 FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNV 305
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+ LEKL++L ECCY+P WL ++Y ++ + P SP+I+LDDGLVY+ RV VTP
Sbjct: 306 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTP 364
[25][TOP]
>UniRef100_A4UBI7 Putative RNA-directed RNA polymerase 1 n=1 Tax=Nicotiana attenuata
RepID=A4UBI7_9SOLA
Length = 1044
Score = 159 bits (401), Expect = 2e-37
Identities = 78/179 (43%), Positives = 120/179 (67%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F+ + D+QW+RTTDFT S IG S++ CLE + +P+F +F Y E S F
Sbjct: 187 FFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFHNGVRLPNFSGSFFYYKESGPSYFTDWF 245
Query: 214 GSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDR 393
S+ + LVP+V P G LP++ILFK+++L+Q+ C G AL+ +F++L++ ++ +
Sbjct: 246 TFSFVQKLS-LVPIVHLPEGVELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNI 304
Query: 394 ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
A I+H LEKL++L ECCY+P WL ++Y +++ +LP SP+I+LDDGLVY+ RV VTP
Sbjct: 305 ACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKHRQLPKSPSITLDDGLVYVRRVLVTP 363
[26][TOP]
>UniRef100_B5M060 RNA-directed RNA polymerase 1b n=1 Tax=Hordeum vulgare
RepID=B5M060_HORVU
Length = 1115
Score = 157 bits (396), Expect = 7e-37
Identities = 89/186 (47%), Positives = 121/186 (65%), Gaps = 3/186 (1%)
Frame = +1
Query: 25 IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 204
+ +++ D +D+QW RTTDFT S+ IGQS CLELP +P+ RE F Y H F
Sbjct: 199 LFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYLPNIREYFVYYEVHN-DIFN 257
Query: 205 IESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLN--Q 378
++ G SYSSN VPVV +P+EILFK+N LVQN LSGP LD +FYRL++
Sbjct: 258 LQPGYSYSSN-TCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGY 316
Query: 379 KKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISL-DDGLVYMYR 555
++ DR I LEK+ +L + C P +WL ++YKK + + ++ SP I+L DDGLVY+YR
Sbjct: 317 ERIDR--IKRALEKMSYLKKTCLNPTNWLSEQYKK-MRRSRVLTSPNITLDDDGLVYVYR 373
Query: 556 VQVTPA 573
VQ+TPA
Sbjct: 374 VQITPA 379
[27][TOP]
>UniRef100_B5M059 RNA-directed RNA polymerase 1a (Fragment) n=1 Tax=Hordeum vulgare
RepID=B5M059_HORVU
Length = 1114
Score = 153 bits (387), Expect = 8e-36
Identities = 84/184 (45%), Positives = 112/184 (60%), Gaps = 1/184 (0%)
Frame = +1
Query: 25 IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 204
+ +++ D +D+QW RTTDFT + IGQS CLELP +P+ RE FA Y H F
Sbjct: 199 LFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLPNIREYFAYYKNHN-HDFH 257
Query: 205 IESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKK 384
G SYSSN + VP+V +P+EILFK+N LVQN LSGP LD +FYRL++
Sbjct: 258 CMRGHSYSSN-SCFVPIVKSQYFTDVPYEILFKINNLVQNGILSGPTLDDNFYRLVSPGY 316
Query: 385 YDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISL-DDGLVYMYRVQ 561
I H LE + +L + C P +WL ++YK+ + SP I+L DDGL Y+YRVQ
Sbjct: 317 VCIDHIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSPNIALDDDGLAYVYRVQ 376
Query: 562 VTPA 573
+TPA
Sbjct: 377 ITPA 380
[28][TOP]
>UniRef100_Q6RFI0 RNA-directed RNA polymerase 1 n=1 Tax=Hordeum vulgare subsp.
vulgare RepID=Q6RFI0_HORVD
Length = 1115
Score = 153 bits (386), Expect = 1e-35
Identities = 88/186 (47%), Positives = 120/186 (64%), Gaps = 3/186 (1%)
Frame = +1
Query: 25 IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 204
+ +++ D +D+QW RTTDFT S+ IGQS LELP +P+ RE F Y H F
Sbjct: 199 LFNYFRDDTDDQWTRTTDFTPSASIGQSYILSLELPHICYLPNIREYFVYYEVHN-DIFN 257
Query: 205 IESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLN--Q 378
++ G SYSSN VPVV +P+EILFK+N LVQN LSGP LD +FYRL++
Sbjct: 258 LQPGYSYSSN-TCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGY 316
Query: 379 KKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISL-DDGLVYMYR 555
++ DR I LEK+ +L + C P +WL ++YKK + + ++ SP I+L DDGLVY+YR
Sbjct: 317 ERIDR--IKRALEKMSYLKKTCLNPTNWLSEQYKK-MRRSRVLTSPNITLDDDGLVYVYR 373
Query: 556 VQVTPA 573
VQ+TPA
Sbjct: 374 VQITPA 379
[29][TOP]
>UniRef100_Q6RFH9 RNA-directed RNA polymerase 2 n=1 Tax=Hordeum vulgare subsp.
vulgare RepID=Q6RFH9_HORVD
Length = 1115
Score = 149 bits (377), Expect = 1e-34
Identities = 82/184 (44%), Positives = 110/184 (59%), Gaps = 1/184 (0%)
Frame = +1
Query: 25 IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 204
+ +++ D +D+QW RTTDFT + IGQS CLELP +P+ RE F Y H F
Sbjct: 199 LFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLPNIREYFVYYKNHN-HDFH 257
Query: 205 IESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKK 384
G SYSSN + VP+V +P+EILFK+N LVQN LSGP LD +FY L++
Sbjct: 258 CMRGHSYSSN-SCFVPIVKSQYFTDVPYEILFKINNLVQNGILSGPTLDDNFYSLVSPGY 316
Query: 385 YDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISL-DDGLVYMYRVQ 561
I H LE + +L + C P +WL ++YK+ + SP I+L DDGL Y+YRVQ
Sbjct: 317 VCIDHIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSPNIALDDDGLAYVYRVQ 376
Query: 562 VTPA 573
+TPA
Sbjct: 377 ITPA 380
[30][TOP]
>UniRef100_A2X9D0 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2X9D0_ORYSI
Length = 1067
Score = 149 bits (376), Expect = 1e-34
Identities = 82/183 (44%), Positives = 112/183 (61%)
Frame = +1
Query: 25 IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 204
+ +++ D +D+QW RTTDFTSSS IGQS CLE+P ++P+ R+ F Y E+
Sbjct: 201 LFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRCDLPNIRDYFFYYHEYNHDFEC 260
Query: 205 IESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKK 384
G YSS+ VP+V G+ +P+EILFK+N LVQN LSGP +D F+RL++
Sbjct: 261 RSGGYPYSSDTR-FVPIVKSR-GY-VPYEILFKINHLVQNGTLSGPTVDDSFFRLVSPAF 317
Query: 385 YDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQV 564
I LE + +L + C P WL ++Y K+ + SP ISLDDGLVY+YRVQV
Sbjct: 318 VPIDHIKRALEMMSYLKKTCLNPTSWLSEQYSKFRRSRYVQPSPNISLDDGLVYVYRVQV 377
Query: 565 TPA 573
TPA
Sbjct: 378 TPA 380
[31][TOP]
>UniRef100_C5XZ94 Putative uncharacterized protein Sb04g028630 n=1 Tax=Sorghum
bicolor RepID=C5XZ94_SORBI
Length = 1114
Score = 137 bits (345), Expect = 6e-31
Identities = 80/182 (43%), Positives = 106/182 (58%), Gaps = 1/182 (0%)
Frame = +1
Query: 31 DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIE 210
+++ D +DEQW RT DFT S IGQS+ FCLE+P +P + F Y E R F
Sbjct: 203 NWFMDDTDEQWTRTIDFTPSVSIGQSSIFCLEVPQQCELPRIGDYFVYYKE-RNLDFECR 261
Query: 211 SGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYD 390
+G SYS N LVP+V P +P+EILFK+N LVQN LSGP +D F+ ++ +
Sbjct: 262 NGYSYSC-GNCLVPIVKSPDYIEVPYEILFKINHLVQNGTLSGPTVDHSFFCHVSPEFEP 320
Query: 391 RALIDHCLEKLFHLGECCYEPAHWLRDEYKK-WISKGKLPLSPTISLDDGLVYMYRVQVT 567
I L K+ +L C P +WL +Y + S+ S ISLDDGLVY++RVQVT
Sbjct: 321 IDHIKRALLKMSYLKSTCLNPTNWLSVQYSRIRRSRHASQRSSNISLDDGLVYVHRVQVT 380
Query: 568 PA 573
PA
Sbjct: 381 PA 382
[32][TOP]
>UniRef100_C7F747 Putative RNA-dependent RNA polymerase n=1 Tax=Zea mays
RepID=C7F747_MAIZE
Length = 1108
Score = 121 bits (304), Expect = 3e-26
Identities = 74/183 (40%), Positives = 100/183 (54%), Gaps = 2/183 (1%)
Frame = +1
Query: 31 DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIE 210
+++ D DEQW RT DFT S+ IGQS+ + +P + F Y E F
Sbjct: 203 NWFRDEKDEQWTRTIDFTPSASIGQSSIYVWRCQQQCELPRIGDYFVYYKEQNLD-FECR 261
Query: 211 SGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYD 390
+G SYS ++ LVP+V P +P+EILFK+N LVQN LSG +D F+R ++ K
Sbjct: 262 NGYSYSCGSS-LVPIVKSPDYIEVPYEILFKINHLVQNGTLSGSTVDHSFFRHVSPKFEP 320
Query: 391 RALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS--PTISLDDGLVYMYRVQV 564
I L K+ +L C P WL +Y + I K + ISLDDGLVY++RVQV
Sbjct: 321 IDHIKRALLKMTYLKSTCLNPTDWLSVQYSR-IRKSRHASQKLSNISLDDGLVYVHRVQV 379
Query: 565 TPA 573
TPA
Sbjct: 380 TPA 382
[33][TOP]
>UniRef100_B9F2V8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9F2V8_ORYSJ
Length = 1027
Score = 104 bits (259), Expect = 6e-21
Identities = 59/143 (41%), Positives = 84/143 (58%)
Frame = +1
Query: 25 IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 204
+ +++ D +D+QW RTTDFTSSS IGQS CLE+P ++P+ R+ F Y E+
Sbjct: 201 LFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRCDLPNIRDYFFYYHEYNHDFEC 260
Query: 205 IESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKK 384
G YSS+ VP+V G+ +P+EILFK+N LVQN LSGP +D F+RL++
Sbjct: 261 RSGGYPYSSDTR-FVPIV-KSRGY-VPYEILFKINHLVQNGTLSGPTVDDSFFRLVSPAF 317
Query: 385 YDRALIDHCLEKLFHLGECCYEP 453
I LE + +L + C P
Sbjct: 318 VPIDHIKRALEMMSYLKKTCLNP 340
[34][TOP]
>UniRef100_C5YA80 Putative uncharacterized protein Sb06g019330 n=1 Tax=Sorghum
bicolor RepID=C5YA80_SORBI
Length = 1128
Score = 86.3 bits (212), Expect = 2e-15
Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Frame = +1
Query: 61 WIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFREN--FANYAEHRASSFLIESGSSYSSN 234
W+R DFT ++ G+ + L+L + V D E+ F+ E A S ++ GSS
Sbjct: 219 WVRALDFTPNNSFGECSTLVLKLSKGVPVSDILESLPFSGELEELAISSMLAFGSS---- 274
Query: 235 ANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCL 414
+ +VP+VD P GFS+P+E+LF+LN+LV L ++ D +++L + D +
Sbjct: 275 -SNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLEELSID--TLRRIF 331
Query: 415 EKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPA 573
EK+ L CYEP ++R E +SK K L+ YR+ +TP+
Sbjct: 332 EKMSKLKSTCYEPLQFIRHEAHS-MSKSKKAFLSNKKDGGKLMRCYRIHITPS 383
[35][TOP]
>UniRef100_B9RB56 RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis
RepID=B9RB56_RICCO
Length = 983
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/138 (36%), Positives = 76/138 (55%)
Frame = +1
Query: 61 WIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNAN 240
W+RTTDF+S +GQST+FC E+ L D ++F Y E R ++E G + S A+
Sbjct: 63 WVRTTDFSSVKSVGQSTSFCWEIEEGLEASDIFKSFPYYTEAR-EEVILEDGEEWGS-AS 120
Query: 241 TLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEK 420
+VP+V LP+EILF+LN+LV +S A+D + L D A + L+K
Sbjct: 121 EIVPLVKCGSDSKLPYEILFQLNSLVHTQKISLAAVDTNLITTLGSLTIDTATM--ILQK 178
Query: 421 LFHLGECCYEPAHWLRDE 474
L L CY+P +++ +
Sbjct: 179 LHKLAVTCYDPLAFIKKQ 196
[36][TOP]
>UniRef100_B9IEP4 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9IEP4_POPTR
Length = 1110
Score = 79.3 bits (194), Expect = 2e-13
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 1/175 (0%)
Frame = +1
Query: 52 DEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSS 231
D W+RTTD ++ IGQST+FC E+ L D NF Y E + +E G + S
Sbjct: 213 DFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTFRNFPYYQED-MNRLDLEDGEEFCS 271
Query: 232 NANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHC 411
+ T VP++ L +E+LF+LN+LV +S A+D D ++L + A+I
Sbjct: 272 ASET-VPLIRCGSD-KLAYEVLFQLNSLVHTQKISLAAVDSDLIKILRNLTVNTAII--I 327
Query: 412 LEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISL-DDGLVYMYRVQVTPA 573
L+KL L CY+P +++ ++ +S SP SL ++ ++ +R +TP+
Sbjct: 328 LQKLHKLKMTCYDPLSFVKQSLRESLS------SPPKSLTENNIMSCHRALITPS 376
[37][TOP]
>UniRef100_Q19VG2 RNA-dependent RNA polymerase n=1 Tax=Zea mays RepID=Q19VG2_MAIZE
Length = 1127
Score = 77.0 bits (188), Expect = 9e-13
Identities = 52/171 (30%), Positives = 84/171 (49%)
Frame = +1
Query: 61 WIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNAN 240
W+R DFT +S G+ + L+L +V E+ E I S + S++N
Sbjct: 219 WVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGE--LGELAIASMDVFGSSSN 276
Query: 241 TLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEK 420
+VP+VD P GFS+P+E+LF+LN+LV L ++ D +++L D + EK
Sbjct: 277 -VVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLEDLSID--TLRRIFEK 333
Query: 421 LFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPA 573
+ L CYEP ++R E + K + S L+ YR+ +TP+
Sbjct: 334 MSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRES--GKLMRCYRIHITPS 382
[38][TOP]
>UniRef100_Q19VG1 Truncated MOP1 (Fragment) n=1 Tax=Zea mays RepID=Q19VG1_MAIZE
Length = 310
Score = 77.0 bits (188), Expect = 9e-13
Identities = 52/171 (30%), Positives = 84/171 (49%)
Frame = +1
Query: 61 WIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNAN 240
W+R DFT +S G+ + L+L +V E+ E I S + S++N
Sbjct: 36 WVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGE--LGELAIASMDVFGSSSN 93
Query: 241 TLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEK 420
+VP+VD P GFS+P+E+LF+LN+LV L ++ D +++L D + EK
Sbjct: 94 -VVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLEDLSID--TLRRIFEK 150
Query: 421 LFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPA 573
+ L CYEP ++R E + K + S L+ YR+ +TP+
Sbjct: 151 MSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRES--GKLMRCYRIHITPS 199
[39][TOP]
>UniRef100_Q19VG0 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Zea mays
RepID=Q19VG0_MAIZE
Length = 459
Score = 77.0 bits (188), Expect = 9e-13
Identities = 52/171 (30%), Positives = 84/171 (49%)
Frame = +1
Query: 61 WIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNAN 240
W+R DFT +S G+ + L+L +V E+ E I S + S++N
Sbjct: 13 WVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGE--LGELAIASMDVFGSSSN 70
Query: 241 TLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEK 420
+VP+VD P GFS+P+E+LF+LN+LV L ++ D +++L D + EK
Sbjct: 71 -VVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLEDLSID--TLRRIFEK 127
Query: 421 LFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPA 573
+ L CYEP ++R E + K + S L+ YR+ +TP+
Sbjct: 128 MSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRES--GKLMRCYRIHITPS 176
[40][TOP]
>UniRef100_O82504 F2P3.11 protein n=1 Tax=Arabidopsis thaliana RepID=O82504_ARATH
Length = 1133
Score = 77.0 bits (188), Expect = 9e-13
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Frame = +1
Query: 34 FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIES 213
F + D WIRTTDF+ S IG ST FCLE+ + D Y E S ++
Sbjct: 210 FCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVD- 268
Query: 214 GSSYSSNANTLVPVVDPP-PGFSLPFEILFKLNTLVQNACLS-GPALDLDFYRLLNQKKY 387
G +++S A +VP+++ G P+EILF+LN LV +S A D++ ++L
Sbjct: 269 GKTFASAAQ-IVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAASDMELIKILRGMSL 327
Query: 388 DRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGK-LPLSPTISL-DDGLVYMYRVQ 561
+ AL+ L+KL CY+P +++ + + + K K P S L + ++ R
Sbjct: 328 ETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAY 385
Query: 562 VTPA 573
VTP+
Sbjct: 386 VTPS 389
[41][TOP]
>UniRef100_A7PD40 Chromosome chr17 scaffold_12, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PD40_VITVI
Length = 1127
Score = 76.6 bits (187), Expect = 1e-12
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Frame = +1
Query: 61 WIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNAN 240
W+RTTDF+S +GQST+FC E+ D +F Y + + +E G + S++
Sbjct: 214 WLRTTDFSSIKSLGQSTSFCWEIKEGFPALDIFASFPYYKD--LTELTLEQGEGFCSDSG 271
Query: 241 TLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEK 420
LVP+V G L +EILF+LN+LV +S A+D D +L+ D A++ L+K
Sbjct: 272 -LVPLVKCESGPKLAYEILFQLNSLVHAQKISLAAVDTDLIEILSNLPVDTAIM--ILQK 328
Query: 421 LFHLGECCYEPAHWLRDEYK--KWISKGKLPLSPTISLDDGLVYMYRVQVTPA 573
L Y+P +++ + K P S + ++ ++ +RV VTP+
Sbjct: 329 LHKRKSTRYDPISFIKAQAHIINMNIKNLPPSSHSRLTNNNVMSCHRVLVTPS 381
[42][TOP]
>UniRef100_Q9ZRX3 RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida
RepID=Q9ZRX3_PETHY
Length = 775
Score = 76.3 bits (186), Expect = 2e-12
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1
Query: 400 IDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTP 570
I+H LEKL++L ECCY+P WL +Y +++ + +LP SP+I+LDDGL+Y+ RV VTP
Sbjct: 2 IEHALEKLYNLKECCYDPVRWLTKQYDEYLKRRQLPKSPSITLDDGLMYVRRVLVTP 58
[43][TOP]
>UniRef100_Q647I4 Putative RNA-dependent RNA polymerase RdRP2 n=1 Tax=Nicotiana
benthamiana RepID=Q647I4_NICBE
Length = 1120
Score = 73.9 bits (180), Expect = 8e-12
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 2/173 (1%)
Frame = +1
Query: 61 WIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNAN 240
W+RTTDF++ IG S++ C E+ L D L E G YS A+
Sbjct: 216 WVRTTDFSAMKSIGCSSSPCWEIEDGLLSSDLLSGLPYCNNDVMDLVLDEVGDIYS--AS 273
Query: 241 TLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEK 420
LVP+ P LP+EILF+LN+L+ +S A+ D +L++ + D A++ L+K
Sbjct: 274 ELVPLASFPSDLKLPYEILFQLNSLIHTHKISLGAVKTDLIEVLSKLELDTAMM--ILQK 331
Query: 421 LFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTIS--LDDGLVYMYRVQVTPA 573
+ L C+EP +++ K S + S ++ ++ ++RV VTP+
Sbjct: 332 MHKLQSTCFEPVPFIKTRLHVLGKNSKNQPSSSYSRLVNQNMMSVHRVLVTPS 384
[44][TOP]
>UniRef100_A2XUF4 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XUF4_ORYSI
Length = 1136
Score = 61.2 bits (147), Expect = 5e-08
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 5/176 (2%)
Frame = +1
Query: 61 WIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENF---ANYAEHRASSFLIESGSSYSS 231
W+R DFT + G+ + L+L V D ++ N E +S G SS
Sbjct: 217 WVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLPFSGNLGELTMNSM---DGVGASS 273
Query: 232 NANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHC 411
N +VP+V P +S+P+E+LF+LN+L+ + ++ D ++ L + D +
Sbjct: 274 N---VVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQELPVD--VSRRI 328
Query: 412 LEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDD--GLVYMYRVQVTPA 573
EK+ L CYEP +++ E + LS + L+ YRV +TP+
Sbjct: 329 FEKMHKLESTCYEPLQFIQQEAYSMKRSHNVLLSNEGEGEGERKLMKCYRVNITPS 384
[45][TOP]
>UniRef100_Q7XM31 Probable RNA-dependent RNA polymerase 2 n=1 Tax=Oryza sativa
Japonica Group RepID=RDR2_ORYSJ
Length = 1136
Score = 58.5 bits (140), Expect = 3e-07
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 5/176 (2%)
Frame = +1
Query: 61 WIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENF---ANYAEHRASSFLIESGSSYSS 231
W+R DFT + G+ + L+L V D ++ N E +S G SS
Sbjct: 217 WVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLPFSGNLGELTMNSM---DGVGASS 273
Query: 232 NANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHC 411
N +VP+V P +S+P+E+LF+LN+L+ + ++ D ++ L + D +
Sbjct: 274 N---VVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQELPVD--VSRRI 328
Query: 412 LEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDD--GLVYMYRVQVTPA 573
EK+ L CY P +++ E + LS + L+ YRV +TP+
Sbjct: 329 FEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGEGEGERKLMKCYRVNITPS 384
[46][TOP]
>UniRef100_A3AUN1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AUN1_ORYSJ
Length = 352
Score = 53.9 bits (128), Expect = 9e-06
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Frame = +1
Query: 61 WIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENF---ANYAEHRASSFLIESGSSYSS 231
W+R DFT + G+ + L+L V D ++ N E +S G SS
Sbjct: 217 WVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLPFSGNLGELTMNSM---DGVGASS 273
Query: 232 NANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHC 411
N +VP+V P +S+P+E+LF+LN+L+ + ++ D ++ L + D +
Sbjct: 274 N---VVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQELPVD--VSRRI 328
Query: 412 LEKLFHLGECCYEP 453
EK+ L CY P
Sbjct: 329 FEKMHKLESTCYGP 342