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[1][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 275 bits (703), Expect = 1e-72
Identities = 138/138 (100%), Positives = 138/138 (100%)
Frame = +3
Query: 99 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 278
MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 60
Query: 279 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 458
PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA
Sbjct: 61 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 120
Query: 459 AVKVAKDATLFKNSNNTN 512
AVKVAKDATLFKNSNNTN
Sbjct: 121 AVKVAKDATLFKNSNNTN 138
[2][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 275 bits (703), Expect = 1e-72
Identities = 138/138 (100%), Positives = 138/138 (100%)
Frame = +3
Query: 99 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 278
MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 60
Query: 279 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 458
PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA
Sbjct: 61 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 120
Query: 459 AVKVAKDATLFKNSNNTN 512
AVKVAKDATLFKNSNNTN
Sbjct: 121 AVKVAKDATLFKNSNNTN 138
[3][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 272 bits (695), Expect = 1e-71
Identities = 137/138 (99%), Positives = 137/138 (99%)
Frame = +3
Query: 99 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 278
MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 60
Query: 279 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 458
PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA
Sbjct: 61 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 120
Query: 459 AVKVAKDATLFKNSNNTN 512
AVKVAKDATLFKNSN TN
Sbjct: 121 AVKVAKDATLFKNSNYTN 138
[4][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 231 bits (590), Expect = 2e-59
Identities = 118/137 (86%), Positives = 123/137 (89%)
Frame = +3
Query: 99 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 278
MSSCLLP FKC PDSFS+HFRTS+ KH+KGS FFQPQCAVSTSP LLTS LDVAKLRL
Sbjct: 1 MSSCLLPNFKCQPDSFSVHFRTSYSVSKHSKGSAFFQPQCAVSTSPPLLTSTLDVAKLRL 60
Query: 279 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 458
PSFDTDSDS ISDR WTYTR GPSTEAKYLEALASETLLTSDEAVV AAAAEAVALARA
Sbjct: 61 PSFDTDSDSRISDRPWTYTRTIGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVALARA 120
Query: 459 AVKVAKDATLFKNSNNT 509
A+KVAKDATLF NS+NT
Sbjct: 121 ALKVAKDATLFGNSHNT 137
[5][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 144 bits (362), Expect = 5e-33
Identities = 79/140 (56%), Positives = 99/140 (70%), Gaps = 5/140 (3%)
Frame = +3
Query: 105 SCLLPQFKCPPDSFSIHFRTSF-CAPKHNKGSVFFQPQCAVST-SPALLTS---MLDVAK 269
SCLLPQFKCPPD+FS H + C N+ +++F+ QCA+ST SP L TS +LD+ K
Sbjct: 2 SCLLPQFKCPPDTFSTHPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAVLDIEK 61
Query: 270 LRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVAL 449
LRLPS ++ S+S+ + R WTY GP TEA + LA ETLLTS+EAV+ AAAAEAVAL
Sbjct: 62 LRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVAL 121
Query: 450 ARAAVKVAKDATLFKNSNNT 509
A+AAVKVAKDA NN+
Sbjct: 122 AKAAVKVAKDAARLVGKNNS 141
[6][TOP]
>UniRef100_A7PSL7 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL7_VITVI
Length = 259
Score = 140 bits (353), Expect = 5e-32
Identities = 77/131 (58%), Positives = 96/131 (73%), Gaps = 5/131 (3%)
Frame = +3
Query: 105 SCLLPQFKCPPDSFSIHFRTSF-CAPKHNKGSVFFQPQCAVST-SPALLTS---MLDVAK 269
SCLLPQFKCPPD+FS H + C N+ +++F+ QCA+ST SP L TS +LD+ K
Sbjct: 2 SCLLPQFKCPPDTFSTHPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAVLDIEK 61
Query: 270 LRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVAL 449
LRLPS ++ S+S+ + R WTY GP TEA + LA ETLLTS+EAV+ AAAAEAVAL
Sbjct: 62 LRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVAL 121
Query: 450 ARAAVKVAKDA 482
A+AAVKVAKDA
Sbjct: 122 AKAAVKVAKDA 132
[7][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 132 bits (331), Expect = 2e-29
Identities = 73/137 (53%), Positives = 94/137 (68%), Gaps = 7/137 (5%)
Frame = +3
Query: 99 MSSCLLPQFKCPPDSFSIHFRTSF------CAPKHNKGSVFFQPQCAVST-SPALLTSML 257
M SCLLPQFKC PD+FSIHFR ++ ++ ++++ QC +ST SP+ T++L
Sbjct: 1 MMSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVL 60
Query: 258 DVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAE 437
D+ KLRLPSF+ SDS+ + WTY A + LA+ETL+TSDEAV+ AAAAE
Sbjct: 61 DLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDEAVIAAAAAE 111
Query: 438 AVALARAAVKVAKDATL 488
AVALARAAVKVAKDA L
Sbjct: 112 AVALARAAVKVAKDAAL 128
[8][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 128 bits (321), Expect = 3e-28
Identities = 75/139 (53%), Positives = 96/139 (69%), Gaps = 3/139 (2%)
Frame = +3
Query: 105 SCLLPQFKCPPDSFSIHFRTS-FCAPKHNKGSVFFQPQCAVST-SPALLTSMLDVAKLRL 278
SCLLPQFKC PDSFSIH FC F+ QCA+S+ SP+ T++L++ KLRL
Sbjct: 2 SCLLPQFKCQPDSFSIHSNGEPFC----------FRAQCALSSASPSTSTAVLNLEKLRL 51
Query: 279 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 458
PS ++ SDS+ ++R WTY GP E + +LA+ETL+ +DEAV+ AAAAEAVALARA
Sbjct: 52 PSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAAAEAVALARA 111
Query: 459 AVKVAKDAT-LFKNSNNTN 512
AVKVAKDA + KN + N
Sbjct: 112 AVKVAKDAAEMAKNYCSVN 130
[9][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 126 bits (317), Expect = 7e-28
Identities = 70/127 (55%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Frame = +3
Query: 105 SCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVST-SPALLTSMLDVAKLRLP 281
SCLLPQFKC PD+FS+HFR +H+ + PQC +S+ SP+ T++LD+ KLRLP
Sbjct: 2 SCLLPQFKCQPDTFSVHFRNL----QHHGTNHTQLPQCVLSSASPS--TAVLDLEKLRLP 55
Query: 282 SFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARAA 461
S + SDS+ ++R WTY GP + + +LA+ETL+ +DEAV+ AAAAEAVALARAA
Sbjct: 56 SLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAAAAEAVALARAA 115
Query: 462 VKVAKDA 482
VKVAKDA
Sbjct: 116 VKVAKDA 122
[10][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 112 bits (280), Expect = 1e-23
Identities = 68/139 (48%), Positives = 89/139 (64%), Gaps = 11/139 (7%)
Frame = +3
Query: 105 SCLLPQFKCPPDSFSIHF-------RTSFCAPKHNKGSVFFQPQCAVSTSP----ALLTS 251
+CLLPQFKC PD+FSI +S + N+ V F+PQCAVST P A TS
Sbjct: 2 TCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAETS 61
Query: 252 MLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAA 431
+ DV KLRLP +++S+SL + Q T+ G E K+ AL ++ L+ ++EAV+ AAA
Sbjct: 62 IFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAAAA 121
Query: 432 AEAVALARAAVKVAKDATL 488
AEAVALARAA K+AKDA L
Sbjct: 122 AEAVALARAAAKLAKDAAL 140
[11][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 55.5 bits (132), Expect = 2e-06
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Frame = +3
Query: 105 SCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLD--VAKLRL 278
+CL PQFK P S + H +S + +++ S + CAV TS A++ + A+LRL
Sbjct: 2 ACLAPQFKWAP-SAAAHMPSSSSSSSYSRCSAL-RVHCAV-TSAAVVEDRTNGSAAQLRL 58
Query: 279 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 458
Y P+ + + LASE LL ++EAVV AAAAEAVALARA
Sbjct: 59 ----------------AYA---APAIQRNFEATLASEALL-NEEAVVAAAAAEAVALARA 98
Query: 459 AVKVAKDATLFKNSNN 506
A + A+D NN
Sbjct: 99 AAEAAQDVVQIVQRNN 114