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[1][TOP]
>UniRef100_O24621 Sigma factor 3 n=1 Tax=Arabidopsis thaliana RepID=O24621_ARATH
Length = 571
Score = 263 bits (672), Expect = 4e-69
Identities = 130/137 (94%), Positives = 131/137 (95%)
Frame = +2
Query: 2 RKVKKKARRSSVTAENGDQSSMAIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST 181
RKVKKKARRSSVTAENGDQSS+ IGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST
Sbjct: 224 RKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST 283
Query: 182 GVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTRPL 361
GVKIVADMERIRTQLEEESGKVASLSCW AAAGMNEKLLMRNLHYGWYCRDEL KSTR L
Sbjct: 284 GVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSL 343
Query: 362 HLFLARNYRGLGIVHED 412
LFLARNYRGLGI HED
Sbjct: 344 VLFLARNYRGLGIAHED 360
[2][TOP]
>UniRef100_O22058 Plastid RNA polymerase sigma-subunit n=1 Tax=Arabidopsis thaliana
RepID=O22058_ARATH
Length = 571
Score = 262 bits (670), Expect = 8e-69
Identities = 129/137 (94%), Positives = 131/137 (95%)
Frame = +2
Query: 2 RKVKKKARRSSVTAENGDQSSMAIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST 181
RKVKKKARRSSVTAENGDQSS+ IGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST
Sbjct: 224 RKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST 283
Query: 182 GVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTRPL 361
GVKIVADMERIRTQLEEESGKVASLSCW AAAGMNEKLLMRNLHYGWYCRDEL KSTR L
Sbjct: 284 GVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSL 343
Query: 362 HLFLARNYRGLGIVHED 412
LFLARNYRG+GI HED
Sbjct: 344 VLFLARNYRGMGIAHED 360
[3][TOP]
>UniRef100_Q9MTH2 Sigma factor 3 n=1 Tax=Sinapis alba RepID=Q9MTH2_SINAL
Length = 567
Score = 212 bits (540), Expect = 9e-54
Identities = 105/137 (76%), Positives = 113/137 (82%)
Frame = +2
Query: 2 RKVKKKARRSSVTAENGDQSSMAIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST 181
RK++KKAR NGDQ S I RTTW IDVPRVR+P KYRKKRERISRNE EMS
Sbjct: 225 RKLRKKARTG-----NGDQGSSTISSRTTWEGIDVPRVRKPSKYRKKRERISRNEAEMSQ 279
Query: 182 GVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTRPL 361
GVKIVADMERIRT+LEEE+GKVAS+SCW AAGMN+KLLM NLH+GWYCRDEL KSTR L
Sbjct: 280 GVKIVADMERIRTKLEEETGKVASMSCWAEAAGMNQKLLMHNLHFGWYCRDELVKSTRSL 339
Query: 362 HLFLARNYRGLGIVHED 412
LFLARNYRGLGI HED
Sbjct: 340 VLFLARNYRGLGIAHED 356
[4][TOP]
>UniRef100_Q8L7P7 Sigma factor SigC n=1 Tax=Arabidopsis thaliana RepID=Q8L7P7_ARATH
Length = 291
Score = 154 bits (389), Expect = 3e-36
Identities = 75/80 (93%), Positives = 75/80 (93%)
Frame = +2
Query: 173 MSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKST 352
MSTGVKIVADMERIRTQLEEESGKVASLSCW AAAGMNEKLLMRNLHYGWYCRDEL KST
Sbjct: 1 MSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKST 60
Query: 353 RPLHLFLARNYRGLGIVHED 412
R L LFLARNYRGLGI HED
Sbjct: 61 RSLVLFLARNYRGLGIAHED 80
[5][TOP]
>UniRef100_B9HE05 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HE05_POPTR
Length = 559
Score = 138 bits (347), Expect = 2e-31
Identities = 66/139 (47%), Positives = 98/139 (70%), Gaps = 2/139 (1%)
Frame = +2
Query: 2 RKVKKKARRSSVTAENGDQS-SMAIGLRTTWNNIDVPR-VRRPPKYRKKRERISRNETEM 175
+K ++K RR ++NG ++ S+++ +T NN+ P V+R +R I+RNE +M
Sbjct: 211 KKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLPKPTFVKRTSSSSSRRSLIARNEAKM 270
Query: 176 STGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTR 355
+ GVK+ +D+ERIRT LEEE+G+V SLSCW A G+++K+L + L +GWYCRDEL K+T
Sbjct: 271 TRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRDELIKNTH 330
Query: 356 PLHLFLARNYRGLGIVHED 412
L L++ARNYRG+GI ED
Sbjct: 331 SLVLYIARNYRGMGIAMED 349
[6][TOP]
>UniRef100_B9RRX0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9RRX0_RICCO
Length = 560
Score = 131 bits (330), Expect = 2e-29
Identities = 68/141 (48%), Positives = 94/141 (66%), Gaps = 4/141 (2%)
Frame = +2
Query: 2 RKVKKKARRSSVTAENGDQS-SMAIGLRTTWNNIDVPRVRRPPKYRKKRER---ISRNET 169
+K ++K+RR +A G +S S+ + R + + P V K K + R I+RNE
Sbjct: 210 KKEERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEA 269
Query: 170 EMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKS 349
EM+ G+K++AD+E+IRT LEEE+ +V SLSCW AAG++ K+L + L +GWYCRDEL KS
Sbjct: 270 EMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKS 329
Query: 350 TRPLHLFLARNYRGLGIVHED 412
TR L L+ ARNYRG GI ED
Sbjct: 330 TRSLVLYFARNYRGTGIALED 350
[7][TOP]
>UniRef100_Q710C2 Sigma factor (Fragment) n=1 Tax=Spinacia oleracea
RepID=Q710C2_SPIOL
Length = 548
Score = 123 bits (309), Expect = 6e-27
Identities = 55/103 (53%), Positives = 76/103 (73%)
Frame = +2
Query: 104 VPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGM 283
V + K R +R I++NE EMS G+K+VA +E+++ LE+E+GK SL+CW AAG+
Sbjct: 237 VSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGI 296
Query: 284 NEKLLMRNLHYGWYCRDELAKSTRPLHLFLARNYRGLGIVHED 412
+EK+L +LH+GWYCRDEL KS R L L+L+R YRGLG+ HED
Sbjct: 297 DEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHED 339
[8][TOP]
>UniRef100_A7P4G3 Chromosome chr4 scaffold_6, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P4G3_VITVI
Length = 561
Score = 120 bits (300), Expect = 6e-26
Identities = 58/103 (56%), Positives = 76/103 (73%)
Frame = +2
Query: 104 VPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGM 283
V V+R R+KR ++NE EMS GVK+VA++ERIR LEEE G VASLS W AAG+
Sbjct: 249 VSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGV 308
Query: 284 NEKLLMRNLHYGWYCRDELAKSTRPLHLFLARNYRGLGIVHED 412
++K+L + L +GWYCRDEL +ST L L++ARNYRG+G+ ED
Sbjct: 309 DKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFED 351
[9][TOP]
>UniRef100_A5BHR4 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5BHR4_VITVI
Length = 611
Score = 120 bits (300), Expect = 6e-26
Identities = 58/103 (56%), Positives = 76/103 (73%)
Frame = +2
Query: 104 VPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGM 283
V V+R R+KR ++NE EMS GVK+VA++ERIR LEEE G VASLS W AAG+
Sbjct: 299 VSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGV 358
Query: 284 NEKLLMRNLHYGWYCRDELAKSTRPLHLFLARNYRGLGIVHED 412
++K+L + L +GWYCRDEL +ST L L++ARNYRG+G+ ED
Sbjct: 359 DKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFED 401
[10][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 72.0 bits (175), Expect = 2e-11
Identities = 31/85 (36%), Positives = 58/85 (68%)
Frame = +2
Query: 158 RNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDE 337
R E E+S G++ + +ER++T+L E SG+ + + W +AAG+++K L + +H+G C+D+
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 338 LAKSTRPLHLFLARNYRGLGIVHED 412
+ KS L + +A+NY+G G+ +D
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQD 360
[11][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 72.0 bits (175), Expect = 2e-11
Identities = 31/85 (36%), Positives = 58/85 (68%)
Frame = +2
Query: 158 RNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDE 337
R E E+S G++ + +ER++T+L E SG+ + + W +AAG+++K L + +H+G C+D+
Sbjct: 278 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 337
Query: 338 LAKSTRPLHLFLARNYRGLGIVHED 412
+ KS L + +A+NY+G G+ +D
Sbjct: 338 MIKSNIRLVISIAKNYQGAGMNLQD 362
[12][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 72.0 bits (175), Expect = 2e-11
Identities = 31/85 (36%), Positives = 58/85 (68%)
Frame = +2
Query: 158 RNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDE 337
R E E+S G++ + +ER++T+L E SG+ + + W +AAG+++K L + +H+G C+D+
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 338 LAKSTRPLHLFLARNYRGLGIVHED 412
+ KS L + +A+NY+G G+ +D
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQD 360
[13][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 69.3 bits (168), Expect = 1e-10
Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Frame = +2
Query: 2 RKVKKKARRSSVTAENGDQS-SMAIGLRTTWNNIDVPRV--RRPPKYRKKRERISR---- 160
R+ ++KARR+ + S+ +G + V V P +Y + SR
Sbjct: 221 RQGERKARRARAAEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTS 280
Query: 161 -NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDE 337
ETE+S G++ + +E++ +L+ GK S W AAAG++++ L R L++G +C+D+
Sbjct: 281 SEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDK 340
Query: 338 LAKSTRPLHLFLARNYRGLGIVHED 412
+ KS L + +A+NY+G G+ +D
Sbjct: 341 MIKSNVRLVISIAKNYQGSGMNLQD 365
[14][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 68.2 bits (165), Expect = 3e-10
Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Frame = +2
Query: 2 RKVKKKARRSSVTAE-NGDQSSMAIGLRTTWNNIDVPRV--RRPPKYRKKRERISR---- 160
R+V++KARR+ + + S+ G + + + V P +Y + SR
Sbjct: 224 RQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTA 283
Query: 161 -NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDE 337
E E+S G++ + +E+++ LEE G + + W AAAG+++K L R +YG C+D+
Sbjct: 284 TEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDK 343
Query: 338 LAKSTRPLHLFLARNYRGLGIVHED 412
+ KS L + +A+NY+G G+ +D
Sbjct: 344 MIKSNIRLVISIAKNYQGAGMNIQD 368
[15][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 66.6 bits (161), Expect = 8e-10
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Frame = +2
Query: 2 RKVKKKARRSSVTAE--NGDQSSMAIGLRTTWNNIDVPRVRRPPKYRKKRERIS------ 157
R+ ++KARR + +G QSS+ G + + + R R S
Sbjct: 215 RQTERKARRVKGLEKTASGMQSSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLT 274
Query: 158 -RNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRD 334
R E ++S G++ + +ER++ +L E G + S W +AAG+++K L + + +G C+D
Sbjct: 275 AREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGTQCKD 334
Query: 335 ELAKSTRPLHLFLARNYRGLGIVHED 412
+ KS L + +A+NY+G G+ +D
Sbjct: 335 RMIKSNIRLVISIAKNYQGAGMDFQD 360
[16][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 66.6 bits (161), Expect = 8e-10
Identities = 44/146 (30%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Frame = +2
Query: 2 RKVKKKARRSSVTAENGDQSSMAIGLRTTWNNIDVPRVR----RPPKYRKKRERISR--- 160
R+ ++KARR+ AE + +++ +T VP P ++ + SR
Sbjct: 213 RQTERKARRARA-AEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLS 271
Query: 161 --NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRD 334
E E+S G++ + +ERI +L+E G S + W AAAG+++ L + L+YG C+D
Sbjct: 272 ATEEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKD 331
Query: 335 ELAKSTRPLHLFLARNYRGLGIVHED 412
++ KS L + +A+NY+G G+ +D
Sbjct: 332 KMIKSNVRLVISIAKNYQGTGMNLQD 357
[17][TOP]
>UniRef100_Q0DFH9 Os05g0589200 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group
RepID=Q0DFH9_ORYSJ
Length = 464
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/136 (27%), Positives = 68/136 (50%)
Frame = +2
Query: 5 KVKKKARRSSVTAENGDQSSMAIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTG 184
K +++ + +E G + S+ R + + + Y +R I R ++ +
Sbjct: 213 KSQERKLKRMKASEKGSRVSVKTPSRKSKKSSSSQFIAEWKNYPGRRRSIVREQSALLVT 272
Query: 185 VKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTRPLH 364
+K A++E+IR L ++ +V+ S W AAG++E LL L G+ CR+ L +T L
Sbjct: 273 IKECANLEKIRENLLKDGSEVSHAS-WAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLV 331
Query: 365 LFLARNYRGLGIVHED 412
++A+ Y G+G ED
Sbjct: 332 KYIAKTYAGMGTAFED 347
[18][TOP]
>UniRef100_Q6L565 Putative RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
Group RepID=Q6L565_ORYSJ
Length = 882
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/136 (27%), Positives = 68/136 (50%)
Frame = +2
Query: 5 KVKKKARRSSVTAENGDQSSMAIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTG 184
K +++ + +E G + S+ R + + + Y +R I R ++ +
Sbjct: 538 KSQERKLKRMKASEKGSRVSVKTPSRKSKKSSSSQFIAEWKNYPGRRRSIVREQSALLVT 597
Query: 185 VKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTRPLH 364
+K A++E+IR L ++ +V+ S W AAG++E LL L G+ CR+ L +T L
Sbjct: 598 IKECANLEKIRENLLKDGSEVSHAS-WAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLV 656
Query: 365 LFLARNYRGLGIVHED 412
++A+ Y G+G ED
Sbjct: 657 KYIAKTYAGMGTAFED 672
[19][TOP]
>UniRef100_Q6I5E7 Putative uncharacterized protein OSJNBa0022J22.1 n=1 Tax=Oryza
sativa Japonica Group RepID=Q6I5E7_ORYSJ
Length = 799
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/136 (27%), Positives = 68/136 (50%)
Frame = +2
Query: 5 KVKKKARRSSVTAENGDQSSMAIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTG 184
K +++ + +E G + S+ R + + + Y +R I R ++ +
Sbjct: 455 KSQERKLKRMKASEKGSRVSVKTPSRKSKKSSSSQFIAEWKNYPGRRRSIVREQSALLVT 514
Query: 185 VKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTRPLH 364
+K A++E+IR L ++ +V+ S W AAG++E LL L G+ CR+ L +T L
Sbjct: 515 IKECANLEKIRENLLKDGSEVSHAS-WAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLV 573
Query: 365 LFLARNYRGLGIVHED 412
++A+ Y G+G ED
Sbjct: 574 KYIAKTYAGMGTAFED 589
[20][TOP]
>UniRef100_B8AX92 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AX92_ORYSI
Length = 557
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/136 (27%), Positives = 68/136 (50%)
Frame = +2
Query: 5 KVKKKARRSSVTAENGDQSSMAIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTG 184
K +++ + +E G + S+ R + + + Y +R I R ++ +
Sbjct: 213 KSQERKLKRMKASEKGSRVSVKTPSRKSKKSSSSQFIAEWKNYPGRRRSIVREQSALLVT 272
Query: 185 VKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTRPLH 364
+K A++E+IR L ++ +V+ S W AAG++E LL L G+ CR+ L +T L
Sbjct: 273 IKECANLEKIRENLLKDGSEVSHAS-WAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLV 331
Query: 365 LFLARNYRGLGIVHED 412
++A+ Y G+G ED
Sbjct: 332 KYIAKTYAGMGTAFED 347
[21][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 60.8 bits (146), Expect = 4e-08
Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Frame = +2
Query: 2 RKVKKKARRS--SVTAENGDQSSMAIGL-----RTTWNNIDVPRVRRPPKYRKKRERISR 160
R+ ++KARR+ ++ A +S + L R+ ++ + + K +R ++
Sbjct: 183 RQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLWKMTGRRLLTAK 242
Query: 161 NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDEL 340
E E S G++ + +E I+ +L E +G + S W AAG++EK L + L+YG YC++ +
Sbjct: 243 EEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNYGIYCKNRM 302
Query: 341 AKSTRPLHLFLARNYRGLGI 400
S L + +AR + G G+
Sbjct: 303 VTSNVRLVISIAREFEGPGM 322
[22][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 60.5 bits (145), Expect = 6e-08
Identities = 37/133 (27%), Positives = 69/133 (51%)
Frame = +2
Query: 14 KKARRSSVTAENGDQSSMAIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKI 193
+KA S V+ + G S G + D R R R + E E+S ++
Sbjct: 228 EKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTT-STSRLLTASEELELSAAIQD 286
Query: 194 VADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTRPLHLFL 373
+ +ER++ +L E G + + W AAAG++++ L + +++G C+D++ KS L + +
Sbjct: 287 LLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISI 346
Query: 374 ARNYRGLGIVHED 412
A+NY+G G+ +D
Sbjct: 347 AKNYQGAGMNLQD 359
[23][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 58.5 bits (140), Expect = 2e-07
Identities = 28/83 (33%), Positives = 51/83 (61%)
Frame = +2
Query: 164 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELA 343
E E+S G++ + +ERI +L+E G + + W AAA +++ L + L+Y C+D++
Sbjct: 272 EVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMI 331
Query: 344 KSTRPLHLFLARNYRGLGIVHED 412
KS L + +A+NY+G G+ +D
Sbjct: 332 KSNIRLVISIAKNYQGAGMNLQD 354
[24][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 57.4 bits (137), Expect = 5e-07
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Frame = +2
Query: 2 RKVKKKARR--SSVTAENGDQSSMAIGLRTTWNNIDVPRVRRPP----KYRKKRERISRN 163
R+ ++KARR +++ A S A+G +T + + P K R +
Sbjct: 174 RRTERKARRVRAAMKAAKCFSSRNAVGASSTRKK-RLKGCQTPLGCFYKMTGPRLLTAEQ 232
Query: 164 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELA 343
E E S G++ + +E I+ ++ + +G + S W AAAG +E L R L++G YC++ +
Sbjct: 233 EVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMV 292
Query: 344 KSTRPLHLFLARNYRGLGIVHED 412
KS L + +A+ + G G+ D
Sbjct: 293 KSNVRLVISIAKEHEGPGMEFSD 315
[25][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 56.2 bits (134), Expect = 1e-06
Identities = 27/91 (29%), Positives = 51/91 (56%)
Frame = +2
Query: 128 KYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRN 307
K +R ++ E E S G++ + +E I+ +L E +G + + W AAG++E+ L +
Sbjct: 257 KMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKR 316
Query: 308 LHYGWYCRDELAKSTRPLHLFLARNYRGLGI 400
L +G YC++ + S L + +AR + G G+
Sbjct: 317 LDHGIYCKNRMVTSNVRLVISIAREFEGPGM 347
[26][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 56.2 bits (134), Expect = 1e-06
Identities = 27/91 (29%), Positives = 51/91 (56%)
Frame = +2
Query: 128 KYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRN 307
K +R ++ E E S G++ + +E I+ +L E +G + + W AAG++E+ L +
Sbjct: 257 KMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKR 316
Query: 308 LHYGWYCRDELAKSTRPLHLFLARNYRGLGI 400
L +G YC++ + S L + +AR + G G+
Sbjct: 317 LDHGIYCKNRMVTSNVRLVISIAREFEGPGM 347
[27][TOP]
>UniRef100_Q53KH7 Sigma-70 region 3, putative n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH7_ORYSJ
Length = 368
Score = 56.2 bits (134), Expect = 1e-06
Identities = 27/91 (29%), Positives = 51/91 (56%)
Frame = +2
Query: 128 KYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRN 307
K +R ++ E E S G++ + +E I+ +L E +G + + W AAG++E+ L +
Sbjct: 257 KMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKR 316
Query: 308 LHYGWYCRDELAKSTRPLHLFLARNYRGLGI 400
L +G YC++ + S L + +AR + G G+
Sbjct: 317 LDHGIYCKNRMVTSNVRLVISIAREFEGPGM 347
[28][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 56.2 bits (134), Expect = 1e-06
Identities = 27/91 (29%), Positives = 51/91 (56%)
Frame = +2
Query: 128 KYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRN 307
K +R ++ E E S G++ + +E I+ +L E +G + + W AAG++E+ L +
Sbjct: 257 KMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKR 316
Query: 308 LHYGWYCRDELAKSTRPLHLFLARNYRGLGI 400
L +G YC++ + S L + +AR + G G+
Sbjct: 317 LDHGIYCKNRMVTSNVRLVISIAREFEGPGM 347
[29][TOP]
>UniRef100_C5YWX9 Putative uncharacterized protein Sb09g030350 n=1 Tax=Sorghum
bicolor RepID=C5YWX9_SORBI
Length = 529
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/91 (35%), Positives = 51/91 (56%)
Frame = +2
Query: 140 KRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYG 319
+R I R ++ + +K A +E+IR ++ +E G+ S W AAGM+E LM L G
Sbjct: 226 RRRIIVREQSALLATIKECASLEKIREKMVKE-GQEVSYHRWAEAAGMDEAELMSRLQTG 284
Query: 320 WYCRDELAKSTRPLHLFLARNYRGLGIVHED 412
+ CR+ L +T L +AR+Y G+G +D
Sbjct: 285 YCCRERLLVTTEWLVRCIARSYTGMGTALDD 315
[30][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 56.2 bits (134), Expect = 1e-06
Identities = 27/91 (29%), Positives = 51/91 (56%)
Frame = +2
Query: 128 KYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRN 307
K +R ++ E E S G++ + +E I+ +L E +G + + W AAG++E+ L +
Sbjct: 256 KMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKR 315
Query: 308 LHYGWYCRDELAKSTRPLHLFLARNYRGLGI 400
L +G YC++ + S L + +AR + G G+
Sbjct: 316 LDHGIYCKNRMVTSNVRLVISIAREFEGPGM 346
[31][TOP]
>UniRef100_Q8RWR8 Sigma factor protein n=1 Tax=Zea mays RepID=Q8RWR8_MAIZE
Length = 568
Score = 55.8 bits (133), Expect = 1e-06
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Frame = +2
Query: 59 SSMAIGLRTTWNNIDVPRVRRPPKYRK---------------KRERISRNETEMSTGVKI 193
SS G RT+ + V RRP K RK +R I R ++ + + +K
Sbjct: 231 SSDEKGSRTS---VKVNPPRRPKKSRKASSSQFISEWKSHPGQRRIIVREQSALLSTIKE 287
Query: 194 VADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTRPLHLFL 373
A +E+IR ++ +E G+ S W AAG++E L+ L G+ CRD L +T L +
Sbjct: 288 CAGLEKIREKMVKE-GQEVSYHRWAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCI 346
Query: 374 ARNYRGLGIVHED 412
AR Y G+G +D
Sbjct: 347 ARTYTGMGTALDD 359
[32][TOP]
>UniRef100_C0PCY3 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C0PCY3_MAIZE
Length = 565
Score = 55.8 bits (133), Expect = 1e-06
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Frame = +2
Query: 59 SSMAIGLRTTWNNIDVPRVRRPPKYRK---------------KRERISRNETEMSTGVKI 193
SS G RT+ + V RRP K RK +R I R ++ + + +K
Sbjct: 228 SSDEKGSRTS---VKVNPPRRPKKSRKASSSQFISEWKSHPGQRRIIVREQSALLSTIKE 284
Query: 194 VADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRDELAKSTRPLHLFL 373
A +E+IR ++ +E G+ S W AAG++E L+ L G+ CRD L +T L +
Sbjct: 285 CAGLEKIREKMVKE-GQEVSYHRWAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCI 343
Query: 374 ARNYRGLGIVHED 412
AR Y G+G +D
Sbjct: 344 ARTYTGMGTALDD 356
[33][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 55.5 bits (132), Expect = 2e-06
Identities = 29/95 (30%), Positives = 50/95 (52%)
Frame = +2
Query: 128 KYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRN 307
K +R ++ E E S G++ + +E I+ +L +G + S W AAG +E L +
Sbjct: 233 KMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKR 292
Query: 308 LHYGWYCRDELAKSTRPLHLFLARNYRGLGIVHED 412
L+YG C++ + KS L + +AR + G G+ D
Sbjct: 293 LNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSD 327
[34][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 55.5 bits (132), Expect = 2e-06
Identities = 29/95 (30%), Positives = 50/95 (52%)
Frame = +2
Query: 128 KYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRN 307
K +R ++ E E S G++ + +E I+ +L +G + S W AAG +E L +
Sbjct: 36 KMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKR 95
Query: 308 LHYGWYCRDELAKSTRPLHLFLARNYRGLGIVHED 412
L+YG C++ + KS L + +AR + G G+ D
Sbjct: 96 LNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSD 130
[35][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 55.5 bits (132), Expect = 2e-06
Identities = 29/95 (30%), Positives = 50/95 (52%)
Frame = +2
Query: 128 KYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRN 307
K +R ++ E E S G++ + +E I+ +L +G + S W AAG +E L +
Sbjct: 190 KMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKR 249
Query: 308 LHYGWYCRDELAKSTRPLHLFLARNYRGLGIVHED 412
L+YG C++ + KS L + +AR + G G+ D
Sbjct: 250 LNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSD 284
[36][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 54.7 bits (130), Expect = 3e-06
Identities = 26/86 (30%), Positives = 48/86 (55%)
Frame = +2
Query: 155 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRD 334
+ E E S G++ + +E I+ ++ + + + S W AAAG +E L R L++G YC++
Sbjct: 229 AEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKN 288
Query: 335 ELAKSTRPLHLFLARNYRGLGIVHED 412
+ KS L + +A+ + G G+ D
Sbjct: 289 RMVKSNVRLVISIAKEHEGPGMEFSD 314
[37][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +2
Query: 155 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRD 334
++ E E S G++ + +E I+ +L +G + S W AAG +E L + L+YG C++
Sbjct: 242 AKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCKN 301
Query: 335 ELAKSTRPLHLFLARNYRGLGIVHED 412
+ KS L + +AR + G G+ D
Sbjct: 302 TMVKSNVRLVISIAREFEGPGMEFSD 327
[38][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 54.3 bits (129), Expect = 4e-06
Identities = 25/86 (29%), Positives = 49/86 (56%)
Frame = +2
Query: 155 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWTAAAGMNEKLLMRNLHYGWYCRD 334
+R E ++S ++ + +E I++ LE E G+ A++ W+ A GM + L G + +D
Sbjct: 279 AREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQNAFEARLKKGRFAKD 338
Query: 335 ELAKSTRPLHLFLARNYRGLGIVHED 412
++ S L + +A+NY+G G+ +D
Sbjct: 339 KMVNSNLRLVVSIAKNYQGRGMTLQD 364