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[1][TOP]
>UniRef100_Q9FPH1 At1g64860 n=1 Tax=Arabidopsis thaliana RepID=Q9FPH1_ARATH
Length = 502
Score = 205 bits (522), Expect = 1e-51
Identities = 101/102 (99%), Positives = 101/102 (99%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT
Sbjct: 401 LPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 460
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 178
WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN
Sbjct: 461 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[2][TOP]
>UniRef100_O24629 AT1G64860 protein n=2 Tax=Arabidopsis thaliana RepID=O24629_ARATH
Length = 502
Score = 205 bits (522), Expect = 1e-51
Identities = 101/102 (99%), Positives = 101/102 (99%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT
Sbjct: 401 LPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 460
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 178
WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN
Sbjct: 461 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[3][TOP]
>UniRef100_O22576 RNA polymerase sigma subunit 1 n=1 Tax=Arabidopsis thaliana
RepID=O22576_ARATH
Length = 502
Score = 205 bits (522), Expect = 1e-51
Identities = 101/102 (99%), Positives = 101/102 (99%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT
Sbjct: 401 LPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 460
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 178
WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN
Sbjct: 461 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[4][TOP]
>UniRef100_O22057 Plastid RNA polymerase sigma-subunit n=1 Tax=Arabidopsis thaliana
RepID=O22057_ARATH
Length = 502
Score = 205 bits (522), Expect = 1e-51
Identities = 101/102 (99%), Positives = 101/102 (99%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT
Sbjct: 401 LPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 460
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 178
WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN
Sbjct: 461 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[5][TOP]
>UniRef100_O49935 Sig1 protein n=1 Tax=Sinapis alba RepID=O49935_SINAL
Length = 481
Score = 195 bits (495), Expect = 1e-48
Identities = 95/102 (93%), Positives = 98/102 (96%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HHSYIAD RLENNPWHGYD LALK+EVSKLIS TLGERE+EIIRLYYGLDKECLT
Sbjct: 380 LPGETHHSYIADNRLENNPWHGYDALALKDEVSKLISVTLGEREREIIRLYYGLDKECLT 439
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 178
WEDIS+RIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN
Sbjct: 440 WEDISQRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 481
[6][TOP]
>UniRef100_B9I6T5 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6T5_POPTR
Length = 499
Score = 176 bits (445), Expect = 9e-43
Identities = 84/102 (82%), Positives = 94/102 (92%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HHSYIAD RLENNPWHG D+ ALKEEV+KLI + L ERE+EIIRLY+GLDKECLT
Sbjct: 398 LPGETHHSYIADNRLENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLYHGLDKECLT 457
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 178
WEDISKR+GLSRERVRQVGLVALEKLKHAARK K+EAM++K+
Sbjct: 458 WEDISKRMGLSRERVRQVGLVALEKLKHAARKGKLEAMLVKH 499
[7][TOP]
>UniRef100_B9IPY1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPY1_POPTR
Length = 509
Score = 174 bits (441), Expect = 3e-42
Identities = 84/102 (82%), Positives = 93/102 (91%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HHSYIAD R ENNPWHG D+ ALKEEV+KLI +TL EREKEIIRLY+GLD+ECLT
Sbjct: 408 LPGETHHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLT 467
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 178
WEDISKR+GLSRERVRQVGLVALEKLKHAARKR EAM++K+
Sbjct: 468 WEDISKRMGLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509
[8][TOP]
>UniRef100_B9SDF8 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9SDF8_RICCO
Length = 508
Score = 173 bits (438), Expect = 6e-42
Identities = 84/102 (82%), Positives = 93/102 (91%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HHSYIAD LENNPWHG DD ALK+EV+KLI+ TL ERE+EIIRLYYGLD E LT
Sbjct: 407 LPGETHHSYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLT 466
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 178
WEDISKRIGLSRERVRQVGLVALEKLKHAARK+K+EAM++K+
Sbjct: 467 WEDISKRIGLSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508
[9][TOP]
>UniRef100_UPI0001984E9A PREDICTED: hypothetical protein isoform 2 n=1 Tax=Vitis vinifera
RepID=UPI0001984E9A
Length = 496
Score = 172 bits (436), Expect = 1e-41
Identities = 83/101 (82%), Positives = 93/101 (92%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HSYIAD RLENNPWHG D+ ALK+EV+KLI+ TLGERE++IIRLYYGLD ECLT
Sbjct: 395 LPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLT 454
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 181
WEDISKRIGLSRERVRQVGLVALEKLK+AARK +MEAM++K
Sbjct: 455 WEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVK 495
[10][TOP]
>UniRef100_UPI0001984E99 PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vinifera
RepID=UPI0001984E99
Length = 507
Score = 172 bits (436), Expect = 1e-41
Identities = 83/101 (82%), Positives = 93/101 (92%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HSYIAD RLENNPWHG D+ ALK+EV+KLI+ TLGERE++IIRLYYGLD ECLT
Sbjct: 406 LPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLT 465
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 181
WEDISKRIGLSRERVRQVGLVALEKLK+AARK +MEAM++K
Sbjct: 466 WEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVK 506
[11][TOP]
>UniRef100_A7PAZ2 Chromosome chr16 scaffold_10, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PAZ2_VITVI
Length = 486
Score = 172 bits (436), Expect = 1e-41
Identities = 83/101 (82%), Positives = 93/101 (92%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HSYIAD RLENNPWHG D+ ALK+EV+KLI+ TLGERE++IIRLYYGLD ECLT
Sbjct: 385 LPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLT 444
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 181
WEDISKRIGLSRERVRQVGLVALEKLK+AARK +MEAM++K
Sbjct: 445 WEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVK 485
[12][TOP]
>UniRef100_Q9SLX4 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX4_TOBAC
Length = 508
Score = 168 bits (425), Expect = 2e-40
Identities = 81/101 (80%), Positives = 91/101 (90%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HSYIAD LENNPWHG D ALK+EV+ LIS+TL +RE+EIIRLYYGLD ECLT
Sbjct: 407 LPGETLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLT 466
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 181
WEDISKRIGLSRERVRQVGLVALEKLKHAARKR+++AM++K
Sbjct: 467 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRQLDAMLIK 507
[13][TOP]
>UniRef100_Q9SLX3 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX3_TOBAC
Length = 502
Score = 166 bits (421), Expect = 6e-40
Identities = 79/102 (77%), Positives = 92/102 (90%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HSYIAD RLEN PWHG D+ LK+EV+ LIS+TL ERE+EI+RLYYGLD ECLT
Sbjct: 401 LPGETLHSYIADNRLENIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLT 460
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 178
WEDIS+RIGLSRERVRQVGLVALEKLKHAARKR+++AM++K+
Sbjct: 461 WEDISRRIGLSRERVRQVGLVALEKLKHAARKRRLDAMLVKH 502
[14][TOP]
>UniRef100_Q7EY08 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
Japonica Group RepID=Q7EY08_ORYSJ
Length = 388
Score = 144 bits (362), Expect = 4e-33
Identities = 63/99 (63%), Positives = 86/99 (86%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HSYI D + N+PWHG+++ LKEEV+KL+++TL ERE++IIRLY+G+ K+C T
Sbjct: 287 LPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHT 346
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQVGL+A+EKLKHAAR++ +EA++
Sbjct: 347 WEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 385
[15][TOP]
>UniRef100_Q0J7T6 Os08g0163400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q0J7T6_ORYSJ
Length = 520
Score = 144 bits (362), Expect = 4e-33
Identities = 63/99 (63%), Positives = 86/99 (86%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HSYI D + N+PWHG+++ LKEEV+KL+++TL ERE++IIRLY+G+ K+C T
Sbjct: 419 LPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHT 478
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQVGL+A+EKLKHAAR++ +EA++
Sbjct: 479 WEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 517
[16][TOP]
>UniRef100_O48655 Plastid RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
Group RepID=O48655_ORYSJ
Length = 519
Score = 144 bits (362), Expect = 4e-33
Identities = 63/99 (63%), Positives = 86/99 (86%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HSYI D + N+PWHG+++ LKEEV+KL+++TL ERE++IIRLY+G+ K+C T
Sbjct: 418 LPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHT 477
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQVGL+A+EKLKHAAR++ +EA++
Sbjct: 478 WEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 516
[17][TOP]
>UniRef100_A3BPX7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BPX7_ORYSJ
Length = 420
Score = 144 bits (362), Expect = 4e-33
Identities = 63/99 (63%), Positives = 86/99 (86%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HSYI D + N+PWHG+++ LKEEV+KL+++TL ERE++IIRLY+G+ K+C T
Sbjct: 319 LPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHT 378
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQVGL+A+EKLKHAAR++ +EA++
Sbjct: 379 WEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 417
[18][TOP]
>UniRef100_Q7EY07 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
RepID=Q7EY07_ORYSJ
Length = 342
Score = 144 bits (362), Expect = 4e-33
Identities = 63/99 (63%), Positives = 86/99 (86%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPGE HSYI D + N+PWHG+++ LKEEV+KL+++TL ERE++IIRLY+G+ K+C T
Sbjct: 241 LPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHT 300
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQVGL+A+EKLKHAAR++ +EA++
Sbjct: 301 WEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 339
[19][TOP]
>UniRef100_C5YHG2 Putative uncharacterized protein Sb07g004340 n=1 Tax=Sorghum
bicolor RepID=C5YHG2_SORBI
Length = 500
Score = 140 bits (353), Expect = 4e-32
Identities = 62/99 (62%), Positives = 85/99 (85%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPG+ HSYI D + N+PWHG+++ LKEEV+ LI++TL ERE++IIRLY+G+ K+C T
Sbjct: 399 LPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHT 458
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQVGLVA+EKLKHAAR++ ++A++
Sbjct: 459 WEDISRQFGLSRERVRQVGLVAMEKLKHAARRKHLDALL 497
[20][TOP]
>UniRef100_Q9ZTI3 RNA polymerase sigma factor 1 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI3_MAIZE
Length = 398
Score = 139 bits (351), Expect = 7e-32
Identities = 62/99 (62%), Positives = 84/99 (84%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPG+ HSYI D + N+PWHG+++ LKEEV+ LI++TL ERE++IIRLY+G+ K+C T
Sbjct: 297 LPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNSLINSTLNERERDIIRLYHGIGKQCHT 356
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQVGLVA+EKLKHAAR+ ++A++
Sbjct: 357 WEDISRQFGLSRERVRQVGLVAMEKLKHAARREHLDALL 395
[21][TOP]
>UniRef100_B4FP19 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FP19_MAIZE
Length = 496
Score = 139 bits (351), Expect = 7e-32
Identities = 62/99 (62%), Positives = 84/99 (84%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPG+ HSYI D + N+PWHG+++ LKEEV+ LI++TL ERE++IIRLY+G+ K+C T
Sbjct: 395 LPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNSLINSTLNERERDIIRLYHGIGKQCHT 454
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQVGLVA+EKLKHAAR+ ++A++
Sbjct: 455 WEDISRQFGLSRERVRQVGLVAMEKLKHAARREHLDALL 493
[22][TOP]
>UniRef100_O24348 Plastid RNA polymerase sigma factor n=1 Tax=Sorghum bicolor
RepID=O24348_SORBI
Length = 500
Score = 138 bits (348), Expect = 2e-31
Identities = 61/99 (61%), Positives = 84/99 (84%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPG+ HSYI D + N+PWHG+++ LKEEV+ LI++ L ERE++IIRLY+G+ K+C T
Sbjct: 399 LPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNNLINSNLNERERDIIRLYHGIGKQCHT 458
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQVGLVA+EKLKHAAR++ ++A++
Sbjct: 459 WEDISRQFGLSRERVRQVGLVAMEKLKHAARRKHLDALL 497
[23][TOP]
>UniRef100_Q9ZTI2 RNA polymerase sigma factor 2 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI2_MAIZE
Length = 349
Score = 136 bits (342), Expect = 8e-31
Identities = 60/99 (60%), Positives = 83/99 (83%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPG+ HSYI D + N+PWHG++++ LKEEV+ LI++ L ERE++IIRLY+G+ K+C T
Sbjct: 248 LPGDTLHSYIEDQNVANDPWHGFEEMYLKEEVNNLINSNLNERERDIIRLYHGIGKQCHT 307
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQV LVA+EKLKHAAR++ + A++
Sbjct: 308 WEDISRQFGLSRERVRQVRLVAMEKLKHAARRKHLNALL 346
[24][TOP]
>UniRef100_Q9ZP70 Chloroplast sigma factor (Fragment) n=1 Tax=Triticum aestivum
RepID=Q9ZP70_WHEAT
Length = 461
Score = 134 bits (337), Expect = 3e-30
Identities = 58/99 (58%), Positives = 84/99 (84%)
Frame = -1
Query: 483 LPGEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLT 304
LPG+ HSYI D + N+PWHG+++ LKEEV+KL+++ L ERE++II+LY+G+ K+C T
Sbjct: 360 LPGDTLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYHGIGKQCHT 419
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
WEDIS++ GLSRERVRQVGL+A+EKLK AR++K++A++
Sbjct: 420 WEDISRQFGLSRERVRQVGLIAMEKLKQRARRKKLDALL 458
[25][TOP]
>UniRef100_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens
RepID=A9SW01_PHYPA
Length = 677
Score = 82.8 bits (203), Expect = 1e-14
Identities = 40/97 (41%), Positives = 67/97 (69%), Gaps = 3/97 (3%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKE---CL 307
GE HS +AD +EN PW + + +K++V KL+++ LG RE++I+RL+YG+ +E +
Sbjct: 574 GETLHSLVADRDIENQPWTIVERMLMKDDVDKLLTSQLGPRERDIVRLHYGVGREDGSVM 633
Query: 306 TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
+ E IS R G+SRERVRQ+ A+ KL+ +R++ ++
Sbjct: 634 SLESISYRYGVSRERVRQLETAAMRKLQIKSREQGLD 670
[26][TOP]
>UniRef100_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1Q6A4_9BACT
Length = 491
Score = 62.8 bits (151), Expect = 1e-08
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ K++ TL RE+EII+L +G+ D + E+I KR ++RER+RQ+ +AL KL
Sbjct: 415 LKEQIQKVLD-TLSYREREIIKLRFGISDGYTHSLEEIGKRFNITRERIRQIEAIALRKL 473
Query: 225 KHAARKRKMEAMI 187
+H R RK+E +
Sbjct: 474 QHPVRSRKLEGFL 486
[27][TOP]
>UniRef100_A5KKN8 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KKN8_9FIRM
Length = 273
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTW 301
GE + R E P D L KEEV +L+ TL +REKE+I L +GL K+ T
Sbjct: 185 GEDSLGDFVEDRSETTPEDAMDVLVRKEEVQELLE-TLNDREKEVISLRFGLGKDRTYTL 243
Query: 300 EDISKRIGLSRERVRQVGLVALEKLKHAA 214
E+I + +G++RERVRQ+ A+EKL+ A
Sbjct: 244 EEIGESLGITRERVRQIESKAMEKLRKKA 272
[28][TOP]
>UniRef100_C1A7K2 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27
RepID=C1A7K2_GEMAT
Length = 286
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Frame = -1
Query: 480 PGEAHH--SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD-KEC 310
PGE + Y+ DT + P D AL E + + + L ERE +I+RLY+G+D +
Sbjct: 187 PGEDNRLLDYLPDT-VHPTPEDQTFDKALTEAIEESLGG-LKEREAKILRLYFGIDGADP 244
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
+T E+I ++G++RERVRQ+ AL +L+H +R + +E+ +
Sbjct: 245 MTLEEIGSQLGITRERVRQIKEKALSRLRHVSRSKSLESFL 285
[29][TOP]
>UniRef100_B0ME78 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662
RepID=B0ME78_9FIRM
Length = 370
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLD-KEC 310
GE S++ D ++N D A LKE++S+++ TL ERE++++RL +GLD
Sbjct: 270 GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLSEVLG-TLTEREQKVLRLRFGLDDSRA 328
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R RK++
Sbjct: 329 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 366
[30][TOP]
>UniRef100_C1ZU97 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodothermus
marinus DSM 4252 RepID=C1ZU97_RHOMR
Length = 279
Score = 61.6 bits (148), Expect = 3e-08
Identities = 35/82 (42%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = -1
Query: 438 ENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRER 262
+ +P G + +LK ++ + +S TL RE EIIRLY+G+ +E LT E+I +R GL+RER
Sbjct: 195 DTSPDEGLMEESLKIDIERALS-TLHPREAEIIRLYFGIGREHPLTLEEIGQRFGLTRER 253
Query: 261 VRQVGLVALEKLKHAARKRKME 196
VRQ+ AL KL+ R+ +++
Sbjct: 254 VRQIKEKALRKLRQKHRREELQ 275
[31][TOP]
>UniRef100_C0BBA6 RNA polymerase sigma factor n=1 Tax=Coprococcus comes ATCC 27758
RepID=C0BBA6_9FIRM
Length = 371
Score = 61.6 bits (148), Expect = 3e-08
Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N P LKE++ +++S TL ERE++++RL +G+ D
Sbjct: 271 GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLS-TLTEREQKVLRLRFGMSDGRA 329
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K ++RER+RQ+ AL KL+H +R RK+
Sbjct: 330 RTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKL 366
[32][TOP]
>UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD
Length = 392
Score = 61.2 bits (147), Expect = 3e-08
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECL-TWEDISKRIGLSRERVR 256
NP+ + LKE++ +++ TL ERE+ ++R YGLD T E++ K ++RER+R
Sbjct: 310 NPYDATTRILLKEQLDEVLK-TLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIR 368
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +R++K+E
Sbjct: 369 QIEVKALRKLRHPSRRKKLE 388
[33][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V565_9FIRM
Length = 382
Score = 61.2 bits (147), Expect = 3e-08
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 9/94 (9%)
Frame = -1
Query: 450 DTRLEN--------NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWE 298
DTRL + +P L LKE++S++++ TL RE E++RL +GL D T E
Sbjct: 285 DTRLSDFIEDEAAPDPADAASMLLLKEQISEVLT-TLAPREAEVLRLRFGLVDGRSRTLE 343
Query: 297 DISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
++ + G++RER+RQ+ AL KL+H R RK++
Sbjct: 344 EVGQNFGVTRERIRQIEAKALRKLRHPVRLRKLQ 377
[34][TOP]
>UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii
F0254 RepID=C9MZ09_9FUSO
Length = 392
Score = 60.8 bits (146), Expect = 4e-08
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECL-TWEDISKRIGLSRERVR 256
NP+ + LKE++ +++ TL ERE+ ++R YGLD T E++ K ++RER+R
Sbjct: 310 NPYDATTRVLLKEQLDEVLK-TLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIR 368
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +R++K+E
Sbjct: 369 QIEVKALRKLRHPSRRKKLE 388
[35][TOP]
>UniRef100_C6W468 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Dyadobacter fermentans DSM 18053 RepID=C6W468_DYAFD
Length = 287
Score = 60.8 bits (146), Expect = 4e-08
Identities = 31/91 (34%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = -1
Query: 456 IADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRI 280
+ + LE+ P G + +L++EV + + TL +RE ++I LY+GL+ E +T E+I ++
Sbjct: 197 VLENDLEDKPDSGLVNESLRKEVQRAL-CTLTQREADVIALYFGLNGEHAMTLEEIGEKF 255
Query: 279 GLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
L+RERVRQ+ A+ +L+H +R + ++ +
Sbjct: 256 NLTRERVRQIKEKAIRRLRHVSRSKALKTYL 286
[36][TOP]
>UniRef100_C9M9L0 RNA polymerase major sigma factor n=1 Tax=Jonquetella anthropi E3_33
E1 RepID=C9M9L0_9BACT
Length = 969
Score = 60.5 bits (145), Expect = 6e-08
Identities = 34/98 (34%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGL-DKE 313
GE S + D +E+ +D+A L+E++ ++++A L +RE+E++R +GL D
Sbjct: 869 GEEEDSQLGDF-IEDRSLPSPEDVAADNLLQEQIEEMLNA-LSDREREVLRYRFGLEDGR 926
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ +R G++RER+RQ+ AL KL+H +R +K+
Sbjct: 927 SYTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKKL 964
[37][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 60.5 bits (145), Expect = 6e-08
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + P + LKE++ +++ TL ERE+ ++RL +GLD
Sbjct: 275 GEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLD-TLTEREERVLRLRFGLDDGRA 333
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R RK++
Sbjct: 334 RTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLK 371
[38][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
RepID=B0P3M7_9CLOT
Length = 363
Score = 60.5 bits (145), Expect = 6e-08
Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLD-KEC 310
GE S++ D + N D A LKE++ +++ TL ERE++++RL +GLD
Sbjct: 263 GEEEDSHLGDFIQDENVPVPADAAAFTLLKEQLDEVLG-TLTEREQKVLRLRFGLDDSRA 321
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R RK++
Sbjct: 322 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 359
[39][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 60.5 bits (145), Expect = 6e-08
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D ++N P LKE++ +++ TL ERE++++RL +G+D
Sbjct: 282 GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMDDGRA 340
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K ++RER+RQ+ AL KL+H +R RK+
Sbjct: 341 RTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKL 377
[40][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
RepID=C4Z4Y6_EUBE2
Length = 434
Score = 60.1 bits (144), Expect = 8e-08
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D ++N P LKE++ +++ TL ERE++++RL +G+D
Sbjct: 334 GEEEDSHLGDFIQDDNVPVPAEAAASTLLKEQLVEVLG-TLTEREQKVLRLRFGMDDGRA 392
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K ++RER+RQ+ AL KL+H +R RK+
Sbjct: 393 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKL 429
[41][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 60.1 bits (144), Expect = 8e-08
Identities = 33/98 (33%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLEN---NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE + S++ D +N +P D LK+++ +++ TL ERE+ ++RL +GL D +
Sbjct: 364 GEENDSHLGDFIEDNEGESPIESTSDQMLKDQLEEVLG-TLTEREENVLRLRFGLEDGKT 422
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R ++++
Sbjct: 423 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 460
[42][TOP]
>UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA
RepID=C6JGK6_9FIRM
Length = 375
Score = 60.1 bits (144), Expect = 8e-08
Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D ++N D A LKE++ +++S TL +RE++++RL +GLD
Sbjct: 275 GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVEVLS-TLTDREQKVLRLRFGLDDGRA 333
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R RK++
Sbjct: 334 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 371
[43][TOP]
>UniRef100_C0CQD9 RNA polymerase sigma factor n=1 Tax=Blautia hydrogenotrophica DSM
10507 RepID=C0CQD9_9FIRM
Length = 374
Score = 60.1 bits (144), Expect = 8e-08
Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D ++N D A LKE++ +++S TL +RE++++RL +GLD
Sbjct: 274 GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVEVLS-TLTDREQKVLRLRFGLDDGRA 332
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R RK++
Sbjct: 333 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 370
[44][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
RepID=C0C397_9CLOT
Length = 370
Score = 60.1 bits (144), Expect = 8e-08
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N P LKE++ +++ TL ERE++++RL +G+ D
Sbjct: 270 GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRA 328
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K ++RER+RQ+ AL KL+H +R RK+
Sbjct: 329 RTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKL 365
[45][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
RepID=B0NBC7_EUBSP
Length = 371
Score = 60.1 bits (144), Expect = 8e-08
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N P LKE++ +++ TL ERE++++RL +G+ D
Sbjct: 271 GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRA 329
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K ++RER+RQ+ AL KL+H +R RK+
Sbjct: 330 RTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKL 366
[46][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7AZ88_RUMGN
Length = 371
Score = 60.1 bits (144), Expect = 8e-08
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N P LKE++ +++ TL ERE++++RL +G+ D
Sbjct: 271 GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRA 329
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K ++RER+RQ+ AL KL+H +R RK+
Sbjct: 330 RTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKL 366
[47][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
RepID=A6BEL2_9FIRM
Length = 369
Score = 60.1 bits (144), Expect = 8e-08
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N P LKE++ +++ TL ERE++++RL +G+ D
Sbjct: 269 GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRA 327
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K ++RER+RQ+ AL KL+H +R RK+
Sbjct: 328 RTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKL 364
[48][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KQA4_9FIRM
Length = 383
Score = 60.1 bits (144), Expect = 8e-08
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N P LKE++ +++ TL ERE++++RL +G+ D
Sbjct: 283 GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRA 341
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K ++RER+RQ+ AL KL+H +R RK+
Sbjct: 342 RTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKL 378
[49][TOP]
>UniRef100_Q6AK94 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila
RepID=Q6AK94_DESPS
Length = 447
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/83 (37%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVR 256
+P+ + L V++++S TL +RE++IIRL +G+ +K T E+I KR +SRER+R
Sbjct: 365 SPYEAVQNRELSGRVTEILS-TLSDREEKIIRLRFGIGEKAEYTLEEIGKRFNVSRERIR 423
Query: 255 QVGLVALEKLKHAARKRKMEAMI 187
Q+ AL +L+H++R+ K++ +
Sbjct: 424 QIEKKALNRLRHSSRRDKLKFFV 446
[50][TOP]
>UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583
RepID=C9L8C6_RUMHA
Length = 330
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D ++N D A LKE++ +++ TL ERE++++RL +GLD
Sbjct: 230 GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVEVLG-TLTEREQKVLRLRFGLDDGRA 288
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R RK++
Sbjct: 289 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 326
[51][TOP]
>UniRef100_C4CVR1 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Spirosoma
linguale DSM 74 RepID=C4CVR1_9SPHI
Length = 287
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/85 (36%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = -1
Query: 438 ENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRIGLSRER 262
E+ P G + +L++EV + +S TL +RE ++I LY+GL+ E +T E+I ++ L+RER
Sbjct: 203 EDKPDSGLINDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKFNLTRER 261
Query: 261 VRQVGLVALEKLKHAARKRKMEAMI 187
VRQ+ A+ +L+H +R + ++ +
Sbjct: 262 VRQIKEKAIRRLRHTSRSKALKTYL 286
[52][TOP]
>UniRef100_C4C6T9 RNA polymerase sigma factor n=1 Tax=Sebaldella termitidis ATCC
33386 RepID=C4C6T9_9FUSO
Length = 387
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
NP+ + LKE++ ++ TL ERE+ ++R YGLD T E++ K ++RER+R
Sbjct: 305 NPYDATTRVLLKEQLDGVLK-TLSEREEMVLRYRYGLDDGSPKTLEEVGKIFNVTRERIR 363
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +R++K+E
Sbjct: 364 QIEVKALRKLRHPSRRKKLE 383
[53][TOP]
>UniRef100_B5CNX1 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CNX1_9FIRM
Length = 283
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTW 301
GE + + + + P + L KEEVS+L++A L +REK++IRL YGL D + T
Sbjct: 194 GENNLGDMVEDKASPTPEEAMNLLVQKEEVSELLNA-LNDREKQVIRLRYGLEDGKTHTL 252
Query: 300 EDISKRIGLSRERVRQVGLVALEKLKHAARK 208
E+I + + ++RERVRQ+ A+EKL++ A +
Sbjct: 253 EEIGEELKVTRERVRQIESRAMEKLRNKAER 283
[54][TOP]
>UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174
RepID=A5ZYP8_9FIRM
Length = 330
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D ++N D A LKE++ +++ TL ERE++++RL +GLD
Sbjct: 230 GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLIEVLG-TLTEREQKVLRLRFGLDDGRA 288
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R RK++
Sbjct: 289 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 326
[55][TOP]
>UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
nucleatum RepID=Q8RE13_FUSNN
Length = 331
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 248 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 306
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +RK+K+E
Sbjct: 307 QIEVKALRKLRHPSRKKKLE 326
[56][TOP]
>UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KI23_CLOPH
Length = 372
Score = 59.3 bits (142), Expect = 1e-07
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D ++N P LKE++ +++ TL +RE++++RL +GLD
Sbjct: 272 GEEEDSHLGDFIQDDNVPVPAEAAAFTLLKEQLMEVLG-TLTDREQKVLRLRFGLDDGRA 330
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R RK++
Sbjct: 331 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 368
[57][TOP]
>UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33
RepID=D0BQ42_9FUSO
Length = 416
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 333 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 391
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +RK+K+E
Sbjct: 392 QIEVKALRKLRHPSRKKKLE 411
[58][TOP]
>UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2
RepID=C7XNV3_9FUSO
Length = 418
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 335 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 393
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +RK+K+E
Sbjct: 394 QIEVKALRKLRHPSRKKKLE 413
[59][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 59.3 bits (142), Expect = 1e-07
Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIG-LSRERV 259
+P + + LKE+V +++S TL RE++++RL +GLD + T E++ K +G +SRERV
Sbjct: 191 DPVEELESMLLKEQVDEVLS-TLAPREEKVLRLRFGLDDGKIRTLEEVGKELGGISRERV 249
Query: 258 RQVGLVALEKLKHAARKRKMEAMI 187
RQ+ AL++L+H R R+++ +
Sbjct: 250 RQIETKALKRLRHPNRSRRLKEFL 273
[60][TOP]
>UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1
RepID=C3WX07_9FUSO
Length = 417
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 334 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 392
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +RK+K+E
Sbjct: 393 QIEVKALRKLRHPSRKKKLE 412
[61][TOP]
>UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium
RepID=C3WPP3_9FUSO
Length = 340
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 257 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 315
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +RK+K+E
Sbjct: 316 QIEVKALRKLRHPSRKKKLE 335
[62][TOP]
>UniRef100_A5TTP9 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
polymorphum ATCC 10953 RepID=A5TTP9_FUSNP
Length = 418
Score = 59.3 bits (142), Expect = 1e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 335 SPYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 393
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +RK+K+E
Sbjct: 394 QIEVKALRKLRHPSRKKKLE 413
[63][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
RepID=A0NJA0_OENOE
Length = 458
Score = 59.3 bits (142), Expect = 1e-07
Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLEN---NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D +N +P D LK+++ +++ TL ERE+ ++RL +GL D +
Sbjct: 357 GEEDDSHLGDFIEDNEGESPIESTSDQMLKDQLEEVLG-TLTEREENVLRLRFGLEDGKT 415
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R ++++
Sbjct: 416 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 453
[64][TOP]
>UniRef100_Q1NXM5 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1
RepID=Q1NXM5_9DELT
Length = 442
Score = 58.9 bits (141), Expect = 2e-07
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
+P+ L E V+ ++S TL RE++IIRL +G+ ++ T E+I KR +SRER+R
Sbjct: 360 SPYEAVKGNQLAERVTTILS-TLSPREEKIIRLRFGIGEDAEYTLEEIGKRFNVSRERIR 418
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ AL +L+H++R+ K++
Sbjct: 419 QIEKKALNRLRHSSRREKLK 438
[65][TOP]
>UniRef100_C8R003 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R003_9DELT
Length = 445
Score = 58.9 bits (141), Expect = 2e-07
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
+P+ L E V+ ++S TL RE++IIRL +G+ ++ T E+I KR +SRER+R
Sbjct: 363 SPYEAVKGNQLAERVTTILS-TLSPREEKIIRLRFGIGEDAEYTLEEIGKRFNVSRERIR 421
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ AL +L+H++R+ K++
Sbjct: 422 QIEKKALNRLRHSSRREKLK 441
[66][TOP]
>UniRef100_C3WID8 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 2_1_31
RepID=C3WID8_9FUSO
Length = 269
Score = 58.9 bits (141), Expect = 2e-07
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
+P+ + L+EE+ ++ TL RE++++R YGLD T E++ K ++RER+R
Sbjct: 186 SPYEATNRAILREELDGVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGKIFNVTRERIR 244
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +RK+K+E
Sbjct: 245 QIEVKALRKLRHPSRKKKLE 264
[67][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
43243 RepID=B7AQM8_9BACE
Length = 448
Score = 58.9 bits (141), Expect = 2e-07
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D ++N P LKE++ +++ TL ERE++++RL +GLD
Sbjct: 348 GEEEDSHLGDFIQDDNVPVPAEEAASTILKEQLVEVLG-TLTEREQKVLRLRFGLDDGRA 406
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ + ++RER+RQ+ AL KL+H +R RK+
Sbjct: 407 RTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSRKL 443
[68][TOP]
>UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CM66_9FIRM
Length = 372
Score = 58.9 bits (141), Expect = 2e-07
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N P LKE++ +++ TL ERE++++RL +G+ D
Sbjct: 272 GEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRA 330
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ + ++RER+RQ+ AL KL+H +R RK+
Sbjct: 331 RTLEEVGREFDVTRERIRQIEAKALRKLRHPSRSRKL 367
[69][TOP]
>UniRef100_UPI00016C45A8 transcription initiation factor sigma 70 n=1 Tax=Gemmata
obscuriglobus UQM 2246 RepID=UPI00016C45A8
Length = 556
Score = 58.5 bits (140), Expect = 2e-07
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE+ SY D +N+ P + + LK+++ ++ TL RE+EII+L YGL D
Sbjct: 449 GESEDSYFGDFIEDNSVESPVNAATNEMLKDKIEGVLK-TLTYREREIIKLRYGLGDGYT 507
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI--LKN 178
T E++ + ++RERVRQ+ A+ KL+H R R++E + LKN
Sbjct: 508 YTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSRQLEGFLDGLKN 553
[70][TOP]
>UniRef100_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV14_SULAA
Length = 282
Score = 58.5 bits (140), Expect = 2e-07
Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKEE +L++ L ERE+EII+L YGL+ E T E++ + +G+SRERVRQ+ AL+KL
Sbjct: 210 LKEEFERLLNV-LDEREREIIKLRYGLEGLEPKTLEEVGEMLGISRERVRQLEQRALKKL 268
Query: 225 KHAARKRKME 196
K A K+ ++
Sbjct: 269 KAVALKKHLQ 278
[71][TOP]
>UniRef100_A7HK63 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum
Rt17-B1 RepID=A7HK63_FERNB
Length = 372
Score = 58.2 bits (139), Expect = 3e-07
Identities = 27/72 (37%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
++EE+ KL+ TL +REK+++++ YGL + + +T E++ + G++RER+RQ+ + AL KL
Sbjct: 295 MREEIDKLLE-TLNDREKKVLKMRYGLYNGKPMTLEEVGQFFGVTRERIRQIEVKALRKL 353
Query: 225 KHAARKRKMEAM 190
+H +R R + +
Sbjct: 354 RHPSRSRYLRLL 365
[72][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EU48_9BACT
Length = 387
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGL-DKE 313
GE S + D LE+ D+ A L+E++ +++ L +REKE++RL +GL D
Sbjct: 287 GEEEDSQLGDF-LEDKDLPSPDEAAANQILREQLEEMLE-DLTDREKEVLRLRFGLEDGH 344
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ +R G++RER+RQ+ AL KL+H +R +++
Sbjct: 345 SHTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKRL 382
[73][TOP]
>UniRef100_C1TPF1 RNA polymerase sigma factor n=1 Tax=Dethiosulfovibrio peptidovorans
DSM 11002 RepID=C1TPF1_9BACT
Length = 381
Score = 58.2 bits (139), Expect = 3e-07
Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGL-DKE 313
GE S + D +E+ +D A L E++ ++ A L +RE+E++R +GL D
Sbjct: 281 GEEEDSQLGDF-IEDRDMPSPEDAASCNLLHEQIEDMLDA-LSDREREVLRYRFGLEDGR 338
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ +R G++RER+RQ+ AL KL+H +R +K+
Sbjct: 339 SYTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKKL 376
[74][TOP]
>UniRef100_C0ET20 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
RepID=C0ET20_9FIRM
Length = 367
Score = 58.2 bits (139), Expect = 3e-07
Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKEE+ + + A+L ERE+ +I+L +GLD + T E++ K ++RER+RQ+ AL KL
Sbjct: 295 LKEELEEAM-ASLTERERNVIKLRFGLDDGKTRTLEEVGKEFNVTRERIRQIEAKALRKL 353
Query: 225 KHAARKRKME 196
+H +R RK++
Sbjct: 354 RHPSRSRKLK 363
[75][TOP]
>UniRef100_B9YB48 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042
RepID=B9YB48_9FIRM
Length = 408
Score = 58.2 bits (139), Expect = 3e-07
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGL-DKE 313
GE S++ D +E+ D A LK+E++ ++ L ERE++++RL +GL D
Sbjct: 306 GEEDDSHLGDF-IEDKDAMSPDQYANNQLLKDEINNVLQG-LTEREEKVLRLRFGLYDGR 363
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 178
T E++ K ++RER+RQ+ AL KLKH R +++ + KN
Sbjct: 364 TRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLRDFVDKN 408
[76][TOP]
>UniRef100_B6FR93 RNA polymerase sigma factor n=1 Tax=Clostridium nexile DSM 1787
RepID=B6FR93_9CLOT
Length = 370
Score = 58.2 bits (139), Expect = 3e-07
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N P LKE++ +++ TL +RE++++RL +G+ D
Sbjct: 270 GEEEDSHLGDFIQDDNVPVPAEAAAATLLKEQLGEVLD-TLTDREQKVLRLRFGMNDGRA 328
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K ++RER+RQ+ AL KL+H +R RK+
Sbjct: 329 RTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKL 365
[77][TOP]
>UniRef100_A7VCB7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. L2-50
RepID=A7VCB7_9CLOT
Length = 377
Score = 58.2 bits (139), Expect = 3e-07
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N D A LKE++ +++ TL EREK+++ L +GL D
Sbjct: 277 GEEEDSHLGDFIPDDNMPVPADAAAFTLLKEQLVEVLD-TLTEREKKVLTLRFGLEDGRA 335
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T E++ K ++RER+RQ+ AL KL+H +R RK+ I
Sbjct: 336 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLRDYI 376
[78][TOP]
>UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656
RepID=C4ZEX0_EUBR3
Length = 434
Score = 57.8 bits (138), Expect = 4e-07
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N D A LKE++ +++ TL ERE++++ L +GL D
Sbjct: 334 GEEEDSHLGDFIKDDNVPVPADAAAFTLLKEQLEEVLG-TLTEREQKVLTLRFGLEDGRA 392
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R RK++
Sbjct: 393 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 430
[79][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
ATCC 19414 RepID=C8NZE6_ERYRH
Length = 459
Score = 57.8 bits (138), Expect = 4e-07
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGL-DKE 313
GE S++ D +E+ D+ A LKEE+ K++ L ERE++++RL +GL D
Sbjct: 357 GEEDDSHLGDF-IEDKDALSPDEYANNQLLKEEI-KMVLEGLTEREEKVLRLRFGLEDGR 414
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 181
T E++ K ++RER+RQ+ AL KLKH R +++ + K
Sbjct: 415 TRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLRDFVDK 458
[80][TOP]
>UniRef100_C8NEW7 RNA polymerase sigma-43 factor n=1 Tax=Granulicatella adiacens ATCC
49175 RepID=C8NEW7_9LACT
Length = 374
Score = 57.8 bits (138), Expect = 4e-07
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK--E 313
GE S++ D ++N D A LKE++ +++ L +RE+ ++RL +GLDK E
Sbjct: 273 GEEDDSHLGDFIEDDNATSPADHTAYALLKEQLDEVLEQ-LTDREENVLRLRFGLDKNGE 331
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E + + G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 IRTLEQVGQVFGVTRERIRQIEAKALRKLRHPSRSKQLK 370
[81][TOP]
>UniRef100_C6IUR4 RNA polymerase sigma factor rpoD n=1 Tax=Bacteroides sp. 1_1_6
RepID=C6IUR4_9BACE
Length = 286
Score = 57.8 bits (138), Expect = 4e-07
Identities = 27/73 (36%), Positives = 52/73 (71%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
+L E+ + +S TL EREKEII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTEREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 225 KHAARKRKMEAMI 187
+ + R + +++ +
Sbjct: 273 RQSNRSKLLKSYL 285
[82][TOP]
>UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM
16841 RepID=C0FXF0_9FIRM
Length = 426
Score = 57.8 bits (138), Expect = 4e-07
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N D A LKE++ +++ TL ERE++++ L +GL D
Sbjct: 326 GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLEEVLG-TLTEREQKVLTLRFGLEDGRA 384
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R RK++
Sbjct: 385 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 422
[83][TOP]
>UniRef100_A3HT44 RNA polymerase sigma factor rpoD (Sigma-A) n=1 Tax=Algoriphagus sp.
PR1 RepID=A3HT44_9SPHI
Length = 287
Score = 57.8 bits (138), Expect = 4e-07
Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = -1
Query: 438 ENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRIGLSRER 262
+ P G + +L++EV + +S TL +RE ++I LY+GL+ E +T E+I ++ L+RER
Sbjct: 203 DEKPDDGLMNDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKFNLTRER 261
Query: 261 VRQVGLVALEKLKHAARKRKME 196
VRQ+ A+ +L+H +R + ++
Sbjct: 262 VRQIKEKAIRRLRHTSRSKTLK 283
[84][TOP]
>UniRef100_B2KBW8 RNA polymerase sigma factor n=1 Tax=Elusimicrobium minutum Pei191
RepID=B2KBW8_ELUMP
Length = 571
Score = 57.4 bits (137), Expect = 5e-07
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
NP D K+EVS++++ TL ERE +IIRL +G+D T E++ K ++RERVR
Sbjct: 488 NPTVTASDFLRKQEVSEVLN-TLSEREAKIIRLRFGIDSGYPRTLEEVGKMFNVTRERVR 546
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ A+ KL+H +R + ++
Sbjct: 547 QIEAKAIRKLRHPSRTKMLK 566
[85][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 57.4 bits (137), Expect = 5e-07
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + P + LKE++ ++ TL RE++++RL +GLD
Sbjct: 273 GEEEDSHLGDFIEDQDAPAPADAASFMLLKEQLEDVLD-TLTPREEKVLRLRFGLDDGRA 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R RK++
Sbjct: 332 RTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLK 369
[86][TOP]
>UniRef100_A8SMX7 RNA polymerase sigma factor n=1 Tax=Parvimonas micra ATCC 33270
RepID=A8SMX7_9FIRM
Length = 382
Score = 57.4 bits (137), Expect = 5e-07
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGL-DKE 313
GE S++ D +E+ D+ A LKE++++++S TL +REK+++ L +GL D
Sbjct: 282 GEEDDSHLGDF-IEDETAIAPDEAANFSMLKEQLNQVLS-TLSDREKKVLELRFGLNDGT 339
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KLKH +R +K++
Sbjct: 340 PRTLEEVGKEFEVTRERIRQIEAKALRKLKHPSRSQKLK 378
[87][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 57.4 bits (137), Expect = 5e-07
Identities = 32/89 (35%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D+ ++ H +L LKE++ +I TL +RE+ ++RL +GLD T E++ K
Sbjct: 285 FIEDSEAQSPSDHAAYEL-LKEQLEDVID-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 342
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 343 FGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[88][TOP]
>UniRef100_UPI000197B56E hypothetical protein BACCOPRO_00840 n=1 Tax=Bacteroides coprophilus
DSM 18228 RepID=UPI000197B56E
Length = 317
Score = 57.0 bits (136), Expect = 6e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
+L E+ + +S TL EREK+II++++G++ + +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 245 SLSREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 303
Query: 225 KHAARKRKMEAMI 187
+ +R + +++ +
Sbjct: 304 RQNSRSKLLKSYL 316
[89][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 57.0 bits (136), Expect = 6e-07
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D+ ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 247 FIEDSEAQSPSEHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 304
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 305 FGVTRERIRQIEAKALRKLRHPSRSKRLK 333
[90][TOP]
>UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG
18311 RepID=Q5M3E3_STRT2
Length = 369
Score = 57.0 bits (136), Expect = 6e-07
Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R ++++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLKDFI 367
[91][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 57.0 bits (136), Expect = 6e-07
Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + P + LKE++ +++ TL RE++++RL +GLD
Sbjct: 267 GEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLE-TLTPREEKVLRLRFGLDDGRT 325
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R +K++
Sbjct: 326 RTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 363
[92][TOP]
>UniRef100_Q03JL2 RNA polymerase sigma factor n=2 Tax=Streptococcus thermophilus
RepID=Q03JL2_STRTD
Length = 369
Score = 57.0 bits (136), Expect = 6e-07
Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R ++++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLKDFI 367
[93][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 57.0 bits (136), Expect = 6e-07
Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + P + LKE++ +++ TL RE++++RL +GLD
Sbjct: 272 GEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLE-TLTPREEKVLRLRFGLDDGRT 330
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R +K++
Sbjct: 331 RTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 368
[94][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 57.0 bits (136), Expect = 6e-07
Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ +++ TL ERE+ ++RL +G+D T E++ K G++RER+RQ+ AL KL
Sbjct: 253 LKEQLEEVLD-TLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKL 311
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 312 RHPSRSKRLK 321
[95][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 57.0 bits (136), Expect = 6e-07
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D +N D A LKE++ ++ TL +RE+ ++RL +GL D
Sbjct: 278 GEEDDSHLGDFIEDNEAVSPADSAAYQMLKEQLESVLD-TLTDREENVLRLRFGLEDGRT 336
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K G++RER+RQ+ AL KL+H +R +++
Sbjct: 337 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQL 373
[96][TOP]
>UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM
14600 RepID=C4G971_9FIRM
Length = 614
Score = 57.0 bits (136), Expect = 6e-07
Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D + N P LKE++++++ TL ERE++++ L +GL D
Sbjct: 514 GEEEDSHLGDFIQDENAPVPAEAATFTLLKEQLNEVLD-TLTERERKVLILRFGLEDGRG 572
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R RK++
Sbjct: 573 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLK 610
[97][TOP]
>UniRef100_C4FJU2 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium
yellowstonense SS-5 RepID=C4FJU2_9AQUI
Length = 78
Score = 57.0 bits (136), Expect = 6e-07
Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKL 226
+ EE+ ++ L EREKEII++ YGL+ +E T E++ +++G+SRERVRQ+ AL+KL
Sbjct: 6 IHEELESMLDV-LDEREKEIIKMRYGLNGEESRTLEEVGEKLGISRERVRQLEQRALKKL 64
Query: 225 KHAARKRKME 196
K A K+ ++
Sbjct: 65 KAVALKKHLK 74
[98][TOP]
>UniRef100_C2LRD4 RNA polymerase sigma factor n=1 Tax=Streptococcus salivarius SK126
RepID=C2LRD4_STRSL
Length = 369
Score = 57.0 bits (136), Expect = 6e-07
Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R ++++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLKDFI 367
[99][TOP]
>UniRef100_C2FTX8 RNA polymerase sigma-70 factor n=2 Tax=Sphingobacterium
spiritivorum RepID=C2FTX8_9SPHI
Length = 286
Score = 57.0 bits (136), Expect = 6e-07
Identities = 31/76 (40%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = -1
Query: 411 DLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVAL 235
D +L EE+ + + ATL ERE+EII L++GL L+ E+I ++ L+RERVRQ+ AL
Sbjct: 211 DESLSEEIKRSL-ATLTEREREIIVLFFGLGSNHQLSLEEIGEKFNLTRERVRQIKDKAL 269
Query: 234 EKLKHAARKRKMEAMI 187
++L+H +R + +++ +
Sbjct: 270 QRLRHTSRSKILKSYL 285
[100][TOP]
>UniRef100_C1TLL9 RNA polymerase sigma factor n=1 Tax=Dethiosulfovibrio peptidovorans
DSM 11002 RepID=C1TLL9_9BACT
Length = 381
Score = 57.0 bits (136), Expect = 6e-07
Identities = 26/65 (40%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
L++++ ++ L +REK+++RL +G D +C T ED+ +R G++RER+RQ+ AL KL
Sbjct: 309 LRDQLDDVLEG-LTDREKQVLRLRFGFDDGQCYTLEDVGRRFGVTRERIRQIEAKALRKL 367
Query: 225 KHAAR 211
+H +R
Sbjct: 368 RHPSR 372
[101][TOP]
>UniRef100_B3JJS2 Putative uncharacterized protein n=2 Tax=Bacteroides
RepID=B3JJS2_9BACE
Length = 286
Score = 57.0 bits (136), Expect = 6e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
+L E+ + +S TL EREK+II++++G++ + +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLSREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 225 KHAARKRKMEAMI 187
+ +R + +++ +
Sbjct: 273 RQNSRSKLLKSYL 285
[102][TOP]
>UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753
RepID=A7VZA6_9CLOT
Length = 365
Score = 57.0 bits (136), Expect = 6e-07
Identities = 32/98 (32%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D +++ P + LKE++++++ TL RE++++RL +GL D
Sbjct: 265 GEEEDSHLGDFIPDDDAPAPADAASHILLKEQLAEVLD-TLTPREEKVLRLRFGLEDGRS 323
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R +K++
Sbjct: 324 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 361
[103][TOP]
>UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M18 RepID=Q8P1I9_STRP8
Length = 369
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R +++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[104][TOP]
>UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M3 RepID=Q8K811_STRP3
Length = 369
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R +++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[105][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 56.6 bits (135), Expect = 8e-07
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D E+ P + L+E + +++ TL ERE++++RL +GLD T E++ +
Sbjct: 268 FITDEEAES-PEESASFVLLREHLDGILN-TLTEREEKVLRLRFGLDDGRPRTLEEVGQE 325
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
G++RER+RQ+ AL KL+H +R +K++ I
Sbjct: 326 FGVTRERIRQIEAKALRKLRHPSRSKKLKDYI 357
[106][TOP]
>UniRef100_C5WFT4 RNA polymerase sigma factor n=1 Tax=Streptococcus dysgalactiae
subsp. equisimilis GGS_124 RepID=C5WFT4_STRDG
Length = 369
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R +++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[107][TOP]
>UniRef100_C0MGY0 RNA polymerase sigma factor n=1 Tax=Steptococcus equi subsp.
zooepidemicus H70 RepID=C0MGY0_STRS7
Length = 369
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R +++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[108][TOP]
>UniRef100_C0M883 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. equi
4047 RepID=C0M883_STRE4
Length = 369
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R +++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[109][TOP]
>UniRef100_B9DRV6 RNA polymerase sigma factor n=1 Tax=Streptococcus uberis 0140J
RepID=B9DRV6_STRU0
Length = 369
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R +++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[110][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 56.6 bits (135), Expect = 8e-07
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D +++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 279 FIEDQEVQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 336
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 337 FGVTRERIRQIEAKALRKLRHPSRSKRLK 365
[111][TOP]
>UniRef100_B4U2H7 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp.
zooepidemicus MGCS10565 RepID=B4U2H7_STREM
Length = 369
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R +++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[112][TOP]
>UniRef100_B2VA41 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2VA41_SULSY
Length = 281
Score = 56.6 bits (135), Expect = 8e-07
Identities = 30/58 (51%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Frame = -1
Query: 366 LGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
L EREKEII++ YGLD +E T E++ +++G+SRERVRQ+ AL+KLK A K+ ++
Sbjct: 220 LDEREKEIIKMRYGLDGEEPKTLEEVGEKLGISRERVRQLEQRALKKLKAVALKKHLK 277
[113][TOP]
>UniRef100_B1ZU80 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1
RepID=B1ZU80_OPITP
Length = 353
Score = 56.6 bits (135), Expect = 8e-07
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVR 256
+P+ G + L ++ ++ A+L ERE EIIRL +GLD K+ LT E++ +R ++RER+R
Sbjct: 239 SPFEGLREKNLNSDLHAMV-ASLDEREAEIIRLRFGLDGKDELTLEEVGRRFHVTRERIR 297
Query: 255 QVGLVALEKLKHAARKRK 202
Q+ +AL K++ A K +
Sbjct: 298 QLEYLALSKMRKAMAKHE 315
[114][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 56.6 bits (135), Expect = 8e-07
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D+ ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 285 FIEDSEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 342
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 343 FGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[115][TOP]
>UniRef100_A8LAI4 RNA polymerase sigma factor n=1 Tax=Frankia sp. EAN1pec
RepID=A8LAI4_FRASN
Length = 400
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S + D +N+ P+ + L+E++ ++ TL EREK++I+L +GL D +
Sbjct: 300 GEEQDSQLGDFIEDNDAIVPFEAASFVLLQEQIDSVLH-TLSEREKKVIQLRFGLTDGQP 358
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E + + G++RER+RQ+ L KL H AR +++
Sbjct: 359 RTLEQVGREFGVTRERIRQIESRTLAKLSHPARSQRL 395
[116][TOP]
>UniRef100_A2RFA3 RNA polymerase sigma factor n=9 Tax=Streptococcus pyogenes
RepID=A2RFA3_STRPG
Length = 369
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R +++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[117][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 56.6 bits (135), Expect = 8e-07
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D+ ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 50 FIEDSEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 107
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 108 FGVTRERIRQIEAKALRKLRHPSRSKRLK 136
[118][TOP]
>UniRef100_C7GGM6 RNA polymerase sigma factor RpoD n=1 Tax=Roseburia intestinalis
L1-82 RepID=C7GGM6_9FIRM
Length = 397
Score = 56.6 bits (135), Expect = 8e-07
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++N D A LKE++ +++ TL ERE++++ L +GL D
Sbjct: 297 GEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLEEVLG-TLTEREQKVLTLRFGLEDGRA 355
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + ++RER+RQ+ AL KL+H +R RK++
Sbjct: 356 RTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSRKLK 393
[119][TOP]
>UniRef100_C6I5X7 RpoD n=3 Tax=Bacteroides RepID=C6I5X7_9BACE
Length = 286
Score = 56.6 bits (135), Expect = 8e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
+L E+ + +S TL +REKEII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 225 KHAARKRKMEAMI 187
+ + R + +++ +
Sbjct: 273 RQSNRSKLLKSYL 285
[120][TOP]
>UniRef100_C4DZ35 RNA polymerase sigma factor n=1 Tax=Streptobacillus moniliformis
DSM 12112 RepID=C4DZ35_9FUSO
Length = 379
Score = 56.6 bits (135), Expect = 8e-07
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
NP LKE+++ ++ L ERE++++RL YGLD T E++ K ++RER+R
Sbjct: 296 NPHEATVRSVLKEKLNDVLRKELNEREEQVLRLRYGLDDGAPKTLEEVGKIFDVTRERIR 355
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + A+ KLK+ +K+ +E
Sbjct: 356 QIEVKAINKLKNIKKKKGLE 375
[121][TOP]
>UniRef100_C4CH81 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CH81_9CHLR
Length = 538
Score = 56.6 bits (135), Expect = 8e-07
Identities = 27/69 (39%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE+V ++ + LG+RE+ ++ L +GLD T E++ + G++RER+RQ+ AL KL
Sbjct: 466 LKEQVDDVLGS-LGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRKL 524
Query: 225 KHAARKRKM 199
+H +R +K+
Sbjct: 525 RHPSRSKKL 533
[122][TOP]
>UniRef100_C0EE25 RNA polymerase sigma factor n=1 Tax=Clostridium methylpentosum DSM
5476 RepID=C0EE25_9CLOT
Length = 372
Score = 56.6 bits (135), Expect = 8e-07
Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S+++D +++ P L+E++ ++ TL ERE++++RL +GL D
Sbjct: 272 GEEEDSHLSDFIPDDDAPAPAEAASHTLLREQLGDVLG-TLTEREEKVLRLRFGLEDGRS 330
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R +K++
Sbjct: 331 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 368
[123][TOP]
>UniRef100_A6L3X4 RNA polymerase sigma factor rpoD n=5 Tax=Bacteroides
RepID=A6L3X4_BACV8
Length = 286
Score = 56.6 bits (135), Expect = 8e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
+L E+ + +S TL EREK+II++++G++ + +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 225 KHAARKRKMEAMI 187
+ +R + +++ +
Sbjct: 273 RQNSRSKLLKSYL 285
[124][TOP]
>UniRef100_B3CB36 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis
DSM 17393 RepID=B3CB36_9BACE
Length = 286
Score = 56.6 bits (135), Expect = 8e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
+L E+ + +S TL +REKEII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 225 KHAARKRKMEAMI 187
+ + R + +++ +
Sbjct: 273 RQSNRSKLLKSYL 285
[125][TOP]
>UniRef100_B1SG84 RNA polymerase sigma factor n=1 Tax=Streptococcus infantarius
subsp. infantarius ATCC BAA-102 RepID=B1SG84_9STRE
Length = 369
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R +++ I
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[126][TOP]
>UniRef100_A8RMR2 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8RMR2_9CLOT
Length = 378
Score = 56.6 bits (135), Expect = 8e-07
Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D ++N D A L E++ +++ TL ERE++++RL +GLD
Sbjct: 277 GEEEDSHLGDFIQDDNVLVPQDAAAFTLLHEQLMEVL-LTLTEREQKVLRLRFGLDDGRP 335
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K+ ++RER+RQ+ AL KL+H +R +K++
Sbjct: 336 RTLEEVGKQFNVTRERIRQIEAKALRKLRHPSRSKKLK 373
[127][TOP]
>UniRef100_C3R1S4 RNA polymerase sigma factor rpoD n=9 Tax=Bacteroides
RepID=C3R1S4_9BACE
Length = 286
Score = 56.6 bits (135), Expect = 8e-07
Identities = 26/73 (35%), Positives = 52/73 (71%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
+L E+ + +S TL +REKEII++++G+ ++ +T E+I + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 225 KHAARKRKMEAMI 187
+ + R + +++ +
Sbjct: 273 RQSNRSKLLKSYL 285
[128][TOP]
>UniRef100_A1ZP06 RpoD n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZP06_9SPHI
Length = 287
Score = 56.6 bits (135), Expect = 8e-07
Identities = 28/71 (39%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRIGLSRERVRQVGLVALEK 229
+L++EV + +S TL +RE ++I LY+GL+ E +T E+I ++ L+RERVRQ+ A+ +
Sbjct: 214 SLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKFNLTRERVRQIKEKAIRR 272
Query: 228 LKHAARKRKME 196
L+H +R + ++
Sbjct: 273 LRHTSRSKALK 283
[129][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 56.6 bits (135), Expect = 8e-07
Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + P + LKE++ +++ TL RE++++RL +GLD
Sbjct: 268 GEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLE-TLTPREEKVLRLRFGLDDGRA 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R +K++
Sbjct: 327 RTLEEVGQYFGVTRERIRQIEAKALRKLRHPSRSKKLK 364
[130][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 56.6 bits (135), Expect = 8e-07
Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ K+++ TL RE++++RL +GLD T E++ K ++RER+RQ+ AL KL
Sbjct: 306 LKEQLLKILN-TLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 364
Query: 225 KHAARKRKME 196
+H +R +K++
Sbjct: 365 RHPSRSKKLK 374
[131][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 56.2 bits (134), Expect = 1e-06
Identities = 31/98 (31%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + P + L+E++ +++++ L REK ++RL +GLD
Sbjct: 261 GEEEDSHLGDFIEDEDAQAPAEAASFMLLREQLEEVLNS-LTPREKRVLRLRFGLDDGRA 319
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R +K++
Sbjct: 320 RTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 357
[132][TOP]
>UniRef100_B7ICM7 RNA polymerase sigma factor n=1 Tax=Thermosipho africanus TCF52B
RepID=B7ICM7_THEAB
Length = 371
Score = 56.2 bits (134), Expect = 1e-06
Identities = 27/74 (36%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = -1
Query: 408 LALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALE 232
+ ++EEV K++ TL +REK ++++ YGL D + T E++ + ++RER+RQ+ + AL
Sbjct: 292 MLIREEVDKVLE-TLNDREKLVLKMRYGLIDGKAKTLEEVGQYFNVTRERIRQIEVKALR 350
Query: 231 KLKHAARKRKMEAM 190
KL+H +R R ++ +
Sbjct: 351 KLRHPSRSRYLKLL 364
[133][TOP]
>UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
19977 RepID=B1MCY5_MYCA9
Length = 323
Score = 56.2 bits (134), Expect = 1e-06
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = -1
Query: 378 ISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRK 202
+ ATL ERE+++IRL YGLD + T + I K GLSRERVRQ+ + KL+H R +
Sbjct: 258 VLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLRHGDRAER 317
Query: 201 MEA 193
+ +
Sbjct: 318 LRS 320
[134][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + P + LKE++ +++ TL RE +++RL +GLD
Sbjct: 271 GEEEDSHLGDFIEDQDAPAPAEAASFILLKEQLEEVLE-TLTAREMKVLRLRFGLDDGRS 329
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R +K++
Sbjct: 330 RTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 367
[135][TOP]
>UniRef100_A9KRZ0 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KRZ0_CLOPH
Length = 371
Score = 56.2 bits (134), Expect = 1e-06
Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGL-DKE 313
GE S++ D ++++ G +D A L++++SKL+ TL ERE+ ++ L +GL D
Sbjct: 270 GEEDDSHLGDF-IKDDTIMGPEDAASYAVLQDQISKLLD-TLTEREQRVLILRFGLQDGR 327
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R R ++
Sbjct: 328 SRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRARMLK 366
[136][TOP]
>UniRef100_Q3D699 RNA polymerase sigma factor n=7 Tax=Streptococcus agalactiae
RepID=Q3D699_STRAG
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T ED+ K ++RER+RQ+ AL KL+H +R ++++
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[137][TOP]
>UniRef100_Q3CZ52 RNA polymerase sigma factor n=1 Tax=Streptococcus agalactiae H36B
RepID=Q3CZ52_STRAG
Length = 369
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 268 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 326
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T ED+ K ++RER+RQ+ AL KL+H +R ++++
Sbjct: 327 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[138][TOP]
>UniRef100_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1
RepID=Q1NY91_9DELT
Length = 540
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/99 (32%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLALKEEVS---KLISATLGEREKEIIRLYYGLDKEC- 310
G ++ S++AD +E+ D+ + E + + + TL RE+ ++RL +GLD
Sbjct: 439 GNSNDSFLADF-IEDTEAASPDEATIYENLQSNLRRVLKTLSPREEMVLRLRFGLDTAMD 497
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEA 193
LT E++ + ++RER+RQ+ AL+KLKH AR+ ++ +
Sbjct: 498 LTLEEVGENFAVTRERIRQIEAKALKKLKHPARRNQLSS 536
[139][TOP]
>UniRef100_Q1NMN7 RNA polymerase sigma factor (Fragment) n=1 Tax=delta
proteobacterium MLMS-1 RepID=Q1NMN7_9DELT
Length = 353
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/99 (32%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLALKEEVS---KLISATLGEREKEIIRLYYGLDKEC- 310
G ++ S++AD +E+ D+ + E + + + TL RE+ ++RL +GLD
Sbjct: 252 GNSNDSFLADF-IEDTEAASPDEATIYENLQSNLRRVLKTLSPREEMVLRLRFGLDTAMD 310
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEA 193
LT E++ + ++RER+RQ+ AL+KLKH AR+ ++ +
Sbjct: 311 LTLEEVGENFAVTRERIRQIEAKALKKLKHPARRNQLSS 349
[140][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
RepID=P77870_HELMO
Length = 333
Score = 56.2 bits (134), Expect = 1e-06
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + P + LKE++ +++ TL RE +++RL +GLD
Sbjct: 233 GEEEDSHLGDFIEDQDAPAPAEAASFILLKEQLEEVLE-TLTAREMKVLRLRFGLDDGRS 291
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R +K++
Sbjct: 292 RTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 329
[141][TOP]
>UniRef100_D0BKM7 RNA polymerase sigma-43 factor n=1 Tax=Granulicatella elegans ATCC
700633 RepID=D0BKM7_9LACT
Length = 374
Score = 56.2 bits (134), Expect = 1e-06
Identities = 33/99 (33%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK--E 313
GE S++ D ++N + A LKE++ +++ L +RE+ ++RL +GLDK E
Sbjct: 273 GEEDDSHLGDFIEDDNATSPAEHTAYALLKEQLDEVLEQ-LTDREENVLRLRFGLDKNGE 331
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E + + G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 IRTLEQVGQVFGVTRERIRQIEAKALRKLRHPSRSKQLK 370
[142][TOP]
>UniRef100_A8RBC2 RNA polymerase sigma factor n=1 Tax=Eubacterium dolichum DSM 3991
RepID=A8RBC2_9FIRM
Length = 398
Score = 56.2 bits (134), Expect = 1e-06
Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 5/104 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGL-DKE 313
GE S++ D +E+ D+ A LK+E++ ++ L ERE++++RL +GL D
Sbjct: 296 GEEDDSHLGDF-IEDKEALSPDEYANNQLLKDEINTVLQG-LTEREEKVLRLRFGLYDGR 353
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 181
T E++ K ++RER+RQ+ AL KLKH R ++++ + K
Sbjct: 354 TRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLKDFVDK 397
[143][TOP]
>UniRef100_A7B7L9 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7B7L9_RUMGN
Length = 297
Score = 56.2 bits (134), Expect = 1e-06
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 283
+I DT+ E P L KEEV +++S TL E+E++I+RL YGL D T E+ +
Sbjct: 213 FIEDTQ-EPTPEEAVAALVQKEEVQEMLS-TLTEKEQKILRLRYGLEDGNVHTLEETGQI 270
Query: 282 IGLSRERVRQVGLVALEKLKHAARKR 205
+G++RER+RQ+ ALEKL+ +A R
Sbjct: 271 LGVTRERIRQLESRALEKLRKSAGPR 296
[144][TOP]
>UniRef100_UPI0001BB55B2 RNA polymerase sigma factor RpoD n=1 Tax=Streptococcus sp.
2_1_36FAA RepID=UPI0001BB55B2
Length = 370
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 269 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 327
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R + + I
Sbjct: 328 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFI 368
[145][TOP]
>UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai
DSM 15897 RepID=UPI000196B4EB
Length = 418
Score = 55.8 bits (133), Expect = 1e-06
Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGLDK-E 313
GE S++ D +E+ DD A LK+E+++++ L +RE++++RL +GLD
Sbjct: 317 GEEDDSHLGDF-IEDEGAMSPDDYASNELLKDELNEVL-LELTDREEKVLRLRFGLDDGR 374
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KLKH +R ++++
Sbjct: 375 TRTLEEVGKEFNVTRERIRQIEAKALRKLKHPSRSKRLK 413
[146][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 364 RHPSRSKRLK 373
[147][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 362 RHPSRSKRLK 371
[148][TOP]
>UniRef100_Q6MR57 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus
RepID=Q6MR57_BDEBA
Length = 609
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIADTRLEN---NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC- 310
GE S++ D + NP +L L E+ +++S TL RE++++R+ +G+ +E
Sbjct: 508 GEEEDSHLGDFIEDKKVINPAEAIVNLNLAEQTRRVLS-TLTPREEKVLRMRFGIGEESD 566
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T E++ + ++RER+RQ+ AL KL+H +R K++A +
Sbjct: 567 HTLEEVGQDFNVTRERIRQIEAKALRKLRHPSRSNKLKAFV 607
[149][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[150][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[151][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/70 (38%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
L+E++ +++ TL ERE++++RL +GLD T E++ + G++RER+RQ+ AL KL
Sbjct: 298 LREQLDEVLK-TLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKL 356
Query: 225 KHAARKRKME 196
+H +R +K++
Sbjct: 357 RHPSRSKKLK 366
[152][TOP]
>UniRef100_Q11U62 RNA polymerase sigma-70 factor n=1 Tax=Cytophaga hutchinsonii ATCC
33406 RepID=Q11U62_CYTH3
Length = 287
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/71 (39%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGLDKE-CLTWEDISKRIGLSRERVRQVGLVALEK 229
+L+ EV + +S TL +RE ++I LY+GL+ E +T E+I ++ L+RERVRQ+ A+ +
Sbjct: 214 SLRREVQRALS-TLTQREADVISLYFGLNGEHSMTLEEIGEKFNLTRERVRQIKEKAIRR 272
Query: 228 LKHAARKRKME 196
L+H +R + ++
Sbjct: 273 LRHTSRSKALK 283
[153][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 304 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 362
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 363 RHPSRSKRLK 372
[154][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 264 GEEDDSHLGDFIEDQDAMAPQDAAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 322
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 323 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 360
[155][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 276 GEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 334
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 335 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 372
[156][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ +++ + L EREK++++L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 345 LKEQLLEVLDS-LNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 403
Query: 225 KHAARKRKME 196
+H +R +K++
Sbjct: 404 RHPSRSKKLK 413
[157][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 266 GEEDDSHLGDFIEDQDAQSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 324
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 325 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 362
[158][TOP]
>UniRef100_B8E0E4 RNA polymerase sigma factor n=1 Tax=Dictyoglomus turgidum DSM 6724
RepID=B8E0E4_DICTD
Length = 413
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/71 (38%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 229
+LK+++ +L++ L ERE+EI++L +GL D + T E++ K ++RER+RQ+ AL +
Sbjct: 339 SLKKDIEELLNE-LSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRR 397
Query: 228 LKHAARKRKME 196
L+H +R +K++
Sbjct: 398 LRHPSRSKKIK 408
[159][TOP]
>UniRef100_B5YES0 RNA polymerase sigma factor n=1 Tax=Dictyoglomus thermophilum
H-6-12 RepID=B5YES0_DICT6
Length = 413
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/71 (38%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 229
+LK+++ +L++ L ERE+EI++L +GL D + T E++ K ++RER+RQ+ AL +
Sbjct: 339 SLKKDIEELLNE-LSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRR 397
Query: 228 LKHAARKRKME 196
L+H +R +K++
Sbjct: 398 LRHPSRSKKIK 408
[160][TOP]
>UniRef100_A8AXP5 RNA polymerase sigma factor n=1 Tax=Streptococcus gordonii str.
Challis RepID=A8AXP5_STRGC
Length = 370
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 269 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 327
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R + + I
Sbjct: 328 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFI 368
[161][TOP]
>UniRef100_A6LLT9 RNA polymerase sigma factor n=1 Tax=Thermosipho melanesiensis BI429
RepID=A6LLT9_THEM4
Length = 370
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/74 (36%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = -1
Query: 408 LALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALE 232
+ ++EEV K++ TL +REK ++++ YGL D + T E++ + ++RER+RQ+ + AL
Sbjct: 291 MLIREEVEKVLE-TLNDREKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALR 349
Query: 231 KLKHAARKRKMEAM 190
KL+H +R R ++ +
Sbjct: 350 KLRHPSRSRYLKLL 363
[162][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 55.8 bits (133), Expect = 1e-06
Identities = 26/70 (37%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
L+E++ +++ TL ERE+ ++RL +GLD T E++ ++ G++RER+RQ+ L KL
Sbjct: 291 LREQLDEVLK-TLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 349
Query: 225 KHAARKRKME 196
+H +R +K++
Sbjct: 350 RHPSRSKKLK 359
[163][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 55.8 bits (133), Expect = 1e-06
Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ +++ + L EREK++++L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 339 LKEQLLEVLDS-LNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 397
Query: 225 KHAARKRKME 196
+H +R +K++
Sbjct: 398 RHPSRSKKLK 407
[164][TOP]
>UniRef100_A3CM49 RNA polymerase sigma factor n=1 Tax=Streptococcus sanguinis SK36
RepID=A3CM49_STRSV
Length = 370
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 269 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 327
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R + + I
Sbjct: 328 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFI 368
[165][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[166][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[167][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[168][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 252 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 309
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 310 FGVTRERIRQIEAKALRKLRHPSRSKRLK 338
[169][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[170][TOP]
>UniRef100_C6JI10 RNA polymerase sigma factor n=1 Tax=Fusobacterium varium ATCC 27725
RepID=C6JI10_FUSVA
Length = 414
Score = 55.8 bits (133), Expect = 1e-06
Identities = 29/80 (36%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -1
Query: 432 NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVR 256
NP+ + L+E+++ +++ TL RE+ ++R YGLD T E++ K ++RER+R
Sbjct: 332 NPYELTNRSLLREQLNGVLN-TLSSREERVLRYRYGLDDGSPKTLEEVGKIFKVTRERIR 390
Query: 255 QVGLVALEKLKHAARKRKME 196
Q+ + AL KL+H +R++K+E
Sbjct: 391 QIEVKALRKLRHPSRRKKLE 410
[171][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 302 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 360
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 361 RHPSRSKRLK 370
[172][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[173][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[174][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 277 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 334
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 335 FGVTRERIRQIEAKALRKLRHPSRSKRLK 363
[175][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[176][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
25644 RepID=C2E8V2_9LACO
Length = 373
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D ++ D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDHAATSPADHAAYELLKEQIESVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 369
[177][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 277 GEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 335
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 373
[178][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
RepID=C0XLP2_LACHI
Length = 389
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 289 GEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLD-TLTDREENVLRLRFGLDDGRT 347
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 348 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 385
[179][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
11577 RepID=C0WTG9_LACBU
Length = 389
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 289 GEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLD-TLTDREENVLRLRFGLDDGRT 347
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 348 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 385
[180][TOP]
>UniRef100_A4VWA5 RNA polymerase sigma factor n=6 Tax=Streptococcus suis
RepID=A4VWA5_STRSY
Length = 372
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 271 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 329
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R + + I
Sbjct: 330 RTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFI 370
[181][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[182][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 355 RHPSRSKRLK 364
[183][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Frame = -1
Query: 477 GEAH-HSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLT 304
G++H +I D + H +L LKE++ ++ TL +RE+ ++RL +GLD T
Sbjct: 276 GDSHLGDFIEDQEATSPADHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRT 333
Query: 303 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 334 LEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
[184][TOP]
>UniRef100_B1C3P6 RNA polymerase sigma factor n=1 Tax=Clostridium spiroforme DSM 1552
RepID=B1C3P6_9FIRM
Length = 415
Score = 55.8 bits (133), Expect = 1e-06
Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGLDK-E 313
GE S++ D +E+ DD A LK+E+++++ L +RE++++RL +GLD
Sbjct: 314 GEEDDSHLGDF-IEDEGVMSPDDYAANELLKDELNEVL-LELTDREEKVLRLRFGLDDGR 371
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KLKH +R ++++
Sbjct: 372 TRTLEEVGKEFSVTRERIRQIEAKALRKLKHPSRSKRLK 410
[185][TOP]
>UniRef100_B0N3Z8 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B0N3Z8_9FIRM
Length = 417
Score = 55.8 bits (133), Expect = 1e-06
Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGLDK-E 313
GE S++ D +E+ DD A LK+E+++++ L +RE++++RL +GLD
Sbjct: 316 GEEDDSHLGDF-IEDEGAMSPDDYAANELLKDELNEVL-LELTDREEKVLRLRFGLDDGR 373
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KLKH +R ++++
Sbjct: 374 TRTLEEVGKEFSVTRERIRQIEAKALRKLKHPSRSKRLK 412
[186][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
RepID=B0MPW5_9FIRM
Length = 358
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D + + P LKE++S+++ TL RE++++RL +GL D
Sbjct: 258 GEEEDSHLGDFIPDEDAPAPAEAASRTLLKEQLSEILG-TLTPREEKVLRLRFGLEDGRP 316
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KL+H +R +K++
Sbjct: 317 RTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLK 354
[187][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
RepID=A8U8N7_9LACT
Length = 373
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D +++ ++ A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDHDATSPAENAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRN 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T ED+ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEDVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 369
[188][TOP]
>UniRef100_C6Y2J2 RNA polymerase sigma factor, sigma-70 family n=2 Tax=Pedobacter
RepID=C6Y2J2_PEDHD
Length = 286
Score = 55.8 bits (133), Expect = 1e-06
Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEK 229
+L EE+ + +S TL ERE+EII L++GL L+ E+I ++ L+RERVRQ+ AL++
Sbjct: 213 SLSEEIKRSLS-TLTEREREIIVLFFGLSTNHPLSLEEIGEKFNLTRERVRQIKDKALQR 271
Query: 228 LKHAARKRKMEAMI 187
L+H +R + +++ +
Sbjct: 272 LRHTSRSKILKSYL 285
[189][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ ++ TL ERE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 364 RHPSRSKRLK 373
[190][TOP]
>UniRef100_O33662 RNA polymerase sigma factor rpoD n=2 Tax=Streptococcus mutans
RepID=RPOD_STRMU
Length = 371
Score = 55.8 bits (133), Expect = 1e-06
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIAD---TRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + NP + L+E++ +++ TL +RE+ ++RL +GLD +
Sbjct: 270 GEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKM 328
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T ED+ K ++RER+RQ+ AL KL+H +R +++ +
Sbjct: 329 RTLEDVGKVFDVTRERIRQIEAKALRKLRHPSRSKQLRDFV 369
[191][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[192][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[193][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D ++ H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 278 FIEDQEAQSPSDHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 335
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 336 FGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[194][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
[195][TOP]
>UniRef100_UPI000185CB93 RNA polymerase sigma factor RpoD n=1 Tax=Capnocytophaga sputigena
ATCC 33612 RepID=UPI000185CB93
Length = 287
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 229
+L+ E+ + + TL RE ++IRLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVIRLYFGLGDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 228 LKHAARKRKMEAMI 187
LKH +R + ++ +
Sbjct: 273 LKHTSRSKILKTYL 286
[196][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ ++ TL ERE+ ++RL +GL D T E++ K G++RER+RQ+ AL KL
Sbjct: 295 LKEQLEHVLD-TLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKL 353
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 354 RHPSRSKRLK 363
[197][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NKZ2_GLOVI
Length = 350
Score = 55.5 bits (132), Expect = 2e-06
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = -1
Query: 435 NNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERV 259
N P HG + +++ L+ TL RE++++RL YGL D T +++ ++ GL+RER+
Sbjct: 262 NEPEHGVVRDLMNQDLESLLQ-TLTPRERDVLRLRYGLIDGRSRTLDEVGQQFGLTRERI 320
Query: 258 RQVGLVALEKLKHAARKRKM 199
RQ+ AL KL+H R +++
Sbjct: 321 RQIEARALRKLRHPQRLQRV 340
[198][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
[199][TOP]
>UniRef100_Q02AB6 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus
Ellin6076 RepID=Q02AB6_SOLUE
Length = 563
Score = 55.5 bits (132), Expect = 2e-06
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D ++ N P +L L+E+ ++++ TL RE++II++ +GL D
Sbjct: 457 GEEEESHLGDFIVDQNGISPSDAVINLNLREQTAQVLK-TLTPREEKIIKMRFGLEDGSE 515
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
T E++ + ++RER+RQ+ AL KL+H +R ++ A +
Sbjct: 516 HTLEEVGQNFAVTRERIRQIEAKALRKLRHPSRSHRLRAFL 556
[200][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
[201][TOP]
>UniRef100_B9L102 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L102_THERP
Length = 509
Score = 55.5 bits (132), Expect = 2e-06
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
L+E+V L+ ATL ERE+ ++ + +GL D + T E++ + G++RERVRQ+ AL KL
Sbjct: 437 LREQVQSLL-ATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKL 495
Query: 225 KHAARKRKM 199
+H R R +
Sbjct: 496 RHPQRARAL 504
[202][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 275 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 333
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[203][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 261 GEEDDSHLGDFIEDQDATAPQDAAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 319
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 320 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 357
[204][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
[205][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
[206][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
[207][TOP]
>UniRef100_C6RFN1 RNA polymerase sigma factor n=1 Tax=Campylobacter showae RM3277
RepID=C6RFN1_9PROT
Length = 627
Score = 55.5 bits (132), Expect = 2e-06
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLVALEK 229
LKE++ +++ L EREK +IR+ +GL D+ T E+I K + ++RERVRQ+ A++K
Sbjct: 553 LKEQIDEVLDQ-LNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKK 611
Query: 228 LKHAARKRKMEAMI 187
LKH RK++ I
Sbjct: 612 LKHPKVGRKLKNYI 625
[208][TOP]
>UniRef100_C4RDH0 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149
RepID=C4RDH0_9ACTO
Length = 334
Score = 55.5 bits (132), Expect = 2e-06
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -1
Query: 411 DLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVAL 235
D L+ EV +++ ATL +RE+ +IRL +GLD T +++ + GLSRER+RQ+ V L
Sbjct: 259 DGELRNEV-RIVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTL 317
Query: 234 EKLKHAARKRKMEA 193
KL+ R +++EA
Sbjct: 318 LKLRAPERAQRLEA 331
[209][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
[210][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 275 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 333
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[211][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
[212][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 275 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 333
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[213][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 275 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 333
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[214][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 275 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 333
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[215][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 275 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 333
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[216][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 275 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 333
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[217][TOP]
>UniRef100_C0UTU9 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC
BAA-798 RepID=C0UTU9_9BACT
Length = 363
Score = 55.5 bits (132), Expect = 2e-06
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 283
++ D R NP D LK E+ +++ L REK +++L YGL D + E + +
Sbjct: 271 FVPDVRA--NPEEEATDEVLKTEMDRVLDEVLTPREKRVLQLRYGLGDGHTYSLEKVGRE 328
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKM 199
+G++RERVRQ+ ALEKL+ RK+
Sbjct: 329 LGVTRERVRQLEKQALEKLRRGPAIRKL 356
[218][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 275 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 333
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 334 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[219][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 273 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
[220][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 271 GEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 329
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 330 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 367
[221][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 55.1 bits (131), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 280 GEEDDSHLGDFIEDQEAISPSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 338
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 339 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 376
[222][TOP]
>UniRef100_Q2JMC5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JMC5_SYNJB
Length = 319
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 ENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRER 262
+N+P LA +EEV L+ L ERE+++I YGLD LT +I + IGLSRER
Sbjct: 228 DNDPVEHLTQLARREEVRALVGQ-LSERERQVIVARYGLDGSRGLTLREIGEHIGLSRER 286
Query: 261 VRQVGLVALEKLK 223
VRQ+ AL KL+
Sbjct: 287 VRQIERRALRKLR 299
[223][TOP]
>UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM
Length = 432
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D +N D A L+E++ ++ TL +RE+ ++RL +GL D
Sbjct: 328 GEEDDSHLGDFIEDNEAVSPADSAAYEMLREQLESVLD-TLTDREENVLRLRFGLEDGRT 386
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R ++++
Sbjct: 387 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 424
[224][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 55.1 bits (131), Expect = 2e-06
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D + H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 284 FIEDQEATSPSEHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 341
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 342 FGVTRERIRQIEAKALRKLRHPSRSKRLK 370
[225][TOP]
>UniRef100_B0S1K1 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 29328
RepID=B0S1K1_FINM2
Length = 388
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGL-DKE 313
GE S++ D +E++ D+ A L+EE+ +++ TL ERE++++ L +GL D
Sbjct: 288 GEEEDSHLGDF-IEDDTAIAPDEAANFTMLREELEGILN-TLNERERKVLALRFGLVDGT 345
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KLKH +R +K++
Sbjct: 346 PRTLEEVGKDFDVTRERIRQIEAKALRKLKHPSRSQKLK 384
[226][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
RepID=A4J7B9_DESRM
Length = 367
Score = 55.1 bits (131), Expect = 2e-06
Identities = 25/70 (35%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
L+E++ +++ TL +RE++++RL +GLD T E++ ++ G++RER+RQ+ L KL
Sbjct: 295 LREQLDEVLK-TLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 353
Query: 225 KHAARKRKME 196
+H +R +K++
Sbjct: 354 RHPSRSKKLK 363
[227][TOP]
>UniRef100_Q1PW65 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1PW65_9BACT
Length = 551
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 283
+I D + E+ P LK+++ ++ TL RE+EII+L YG+ D T E++ K
Sbjct: 455 FIEDEKAES-PVAAATQEMLKDKIESVLE-TLTYREREIIKLRYGIGDGYTYTLEEVGKI 512
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
++RERVRQ+ A+ KL+H R RK+E +
Sbjct: 513 FKVTRERVRQIEAKAVRKLQHPIRSRKLEGFL 544
[228][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGLDK-E 313
GE S++ D +E+ +D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 316 GEEDDSHLGDF-IEDQDATSPEDHASYELLKEQLESVLD-TLTDREENVLRLRFGLDDGR 373
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 374 TRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 412
[229][TOP]
>UniRef100_C7M639 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M639_CAPOD
Length = 287
Score = 55.1 bits (131), Expect = 2e-06
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 229
+L+ E+ + + TL RE +++RLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVVRLYFGLSDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 228 LKHAARKRKMEAMI 187
LKH +R + ++ +
Sbjct: 273 LKHTSRSKILKTYL 286
[230][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 55.1 bits (131), Expect = 2e-06
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D + H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 287 FIEDQEATSPSEHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 344
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 345 FGVTRERIRQIEAKALRKLRHPSRSKRLK 373
[231][TOP]
>UniRef100_C5NX65 RNA polymerase sigma factor n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NX65_9BACL
Length = 361
Score = 55.1 bits (131), Expect = 2e-06
Identities = 29/92 (31%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKR 283
+I D ++ H ++L LKE++ +++ TL +RE+ +++L +GL D + T E++
Sbjct: 271 FIEDKEAQSPVEHAANEL-LKEQLEEILE-TLTDREENVLKLRFGLKDGKTHTLEEVGSA 328
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 187
G++RER+RQ+ A+ KLKH ++ K++ +
Sbjct: 329 FGVTRERIRQIEAKAIRKLKHPSKLNKLKGFM 360
[232][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGLDK-E 313
GE S++ D +E+ +D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 252 GEEDDSHLGDF-IEDQDATSPEDHASYELLKEQLESVLD-TLTDREENVLRLRFGLDDGR 309
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 310 TRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 348
[233][TOP]
>UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC
Length = 432
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D +N D A L+E++ ++ TL +RE+ ++RL +GL D
Sbjct: 328 GEEDDSHLGDFIEDNEAVSPADSAAYEMLREQLESVLD-TLTDREENVLRLRFGLEDGRT 386
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ + G++RER+RQ+ AL KL+H +R ++++
Sbjct: 387 RTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 424
[234][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGLDK-E 313
GE S++ D +E+ +D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 316 GEEDDSHLGDF-IEDQDATSPEDHASYELLKEQLESVLD-TLTDREENVLRLRFGLDDGR 373
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 374 TRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 412
[235][TOP]
>UniRef100_C2HGK9 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 53516
RepID=C2HGK9_PEPMA
Length = 389
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGL-DKE 313
GE S++ D +E++ D+ A L+EE+ +++ TL ERE++++ L +GL D
Sbjct: 289 GEEEDSHLGDF-IEDDTAIAPDEAANFTMLREELEGILN-TLNERERKVLALRFGLVDGT 346
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K ++RER+RQ+ AL KLKH +R +K++
Sbjct: 347 PRTLEEVGKDFDVTRERIRQIEAKALRKLKHPSRSQKLK 385
[236][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGLDK-E 313
GE S++ D +E+ +D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 322 GEEDDSHLGDF-IEDQDATSPEDHASYELLKEQLESVLD-TLTDREENVLRLRFGLDDGR 379
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 380 TRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 418
[237][TOP]
>UniRef100_C0BG96 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Flavobacteria
bacterium MS024-2A RepID=C0BG96_9BACT
Length = 287
Score = 55.1 bits (131), Expect = 2e-06
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -1
Query: 405 ALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEK 229
+L+ E+ + + TL RE +++RLY+GL D+ +T E+I + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVVRLYFGLGDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 228 LKHAARKRKMEAMI 187
LKH +R + ++ +
Sbjct: 273 LKHTSRSKILKTYL 286
[238][TOP]
>UniRef100_B6FWI1 RNA polymerase sigma factor n=1 Tax=Clostridium hiranonis DSM 13275
RepID=B6FWI1_9CLOT
Length = 388
Score = 55.1 bits (131), Expect = 2e-06
Identities = 26/69 (37%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ +++ + L ERE+++++L +GL D T E++ K ++RER+RQ+ AL KL
Sbjct: 316 LKEQIDEVLGS-LNEREQKVLKLRFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKL 374
Query: 225 KHAARKRKM 199
+H +R +K+
Sbjct: 375 RHPSRSKKL 383
[239][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIRLYYGLDK-E 313
GE S++ D +E+ +D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 316 GEEDDSHLGDF-IEDQDATSPEDHASYELLKEQLESVLD-TLTDREENVLRLRFGLDDGR 373
Query: 312 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 374 TRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 412
[240][TOP]
>UniRef100_B4VH85 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4VH85_9CYAN
Length = 374
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = -1
Query: 441 LENNPWH----GYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIG 277
LE+N H + +++E+S ++S L EREK++I L YGL E T E++
Sbjct: 284 LEDNDLHLPEQQMSESMMRQEISDVLSDVLTEREKDVISLRYGLATPESYTLEEVGSMFN 343
Query: 276 LSRERVRQVGLVALEKLKHAARKRKMEAMI 187
LSRERVRQ+ A+ KL+ R+++ +
Sbjct: 344 LSRERVRQIQSKAMRKLRRPQVARRLQGWL 373
[241][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 55.1 bits (131), Expect = 2e-06
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -1
Query: 459 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKR 283
+I D + H +L LKE++ ++ TL +RE+ ++RL +GLD T E++ K
Sbjct: 285 FIEDQEATSPSEHAAYEL-LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKV 342
Query: 282 IGLSRERVRQVGLVALEKLKHAARKRKME 196
G++RER+RQ+ AL KL+H +R ++++
Sbjct: 343 FGVTRERIRQIEAKALRKLRHPSRSKRLK 371
[242][TOP]
>UniRef100_B0AB34 RNA polymerase sigma factor n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0AB34_9CLOT
Length = 294
Score = 55.1 bits (131), Expect = 2e-06
Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = -1
Query: 453 ADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIG 277
+D + H + LKE++++L++ L E+E++++R+ +GLD + T E+I K G
Sbjct: 206 SDANFSDVVMHEVEQHNLKEKINELLTG-LSEQEQKVLRMRFGLDDDDPKTLEEIGKVFG 264
Query: 276 LSRERVRQVGLVALEKLKHAARKRKME 196
++RER+RQ+ A+ KL+H +R +++
Sbjct: 265 VTRERIRQIEAKAIRKLRHPSRLNQLK 291
[243][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 55.1 bits (131), Expect = 2e-06
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 272 GEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 330
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 331 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 368
[244][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 54.7 bits (130), Expect = 3e-06
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENN---PWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKEC 310
GE S++ D +++ P LKE+++ ++ TL RE++++RL +GL D
Sbjct: 264 GEEEDSHLGDFIPDDDAPVPAEAASQTLLKEQLADVLK-TLTPREEKVLRLRFGLEDGRP 322
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKM 199
T E++ K ++RER+RQ+ AL KL+H +R +K+
Sbjct: 323 RTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKL 359
[245][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ +++ TL ERE+ ++RL +GL D T E++ + G++RER+RQ+ AL KL
Sbjct: 244 LKEQLEEVLD-TLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKL 302
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 303 RHPSRSKRLK 312
[246][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 360 RHPSRSKRLK 369
[247][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 297 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 356 RHPSRSKQLK 365
[248][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -1
Query: 402 LKEEVSKLISATLGEREKEIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 226
LKE++ ++ TL +RE+ ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 225 KHAARKRKME 196
+H +R ++++
Sbjct: 359 RHPSRSKQLK 368
[249][TOP]
>UniRef100_Q18C16 RNA polymerase sigma factor n=2 Tax=Clostridium difficile
RepID=Q18C16_CLOD6
Length = 296
Score = 54.7 bits (130), Expect = 3e-06
Identities = 26/77 (33%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = -1
Query: 423 HGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVG 247
H + LKE++ +L++ LGE+E++++R+ +G+D + T E I K G++RER+RQ+
Sbjct: 218 HEVEQHNLKEKIEELLTG-LGEQEQQVLRMRFGIDDDDPKTLEQIGKVFGVTRERIRQIE 276
Query: 246 LVALEKLKHAARKRKME 196
A+ KL+H ++ ++++
Sbjct: 277 AKAIRKLRHPSKLKQLK 293
[250][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F68_PEDPA
Length = 379
Score = 54.7 bits (130), Expect = 3e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = -1
Query: 477 GEAHHSYIADTRLENNPWHGYDDLA---LKEEVSKLISATLGEREKEIIRLYYGLDK-EC 310
GE S++ D + D A LKE++ ++ TL +RE+ ++RL +GLD
Sbjct: 279 GEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEGVLD-TLTDREENVLRLRFGLDDGRT 337
Query: 309 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 196
T E++ K G++RER+RQ+ AL KL+H +R ++++
Sbjct: 338 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 375