ROUGE

Gene/Protein Characteristic Table for mKIAA1724

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122544
Description :
Clone Name :	mbg04146 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 6682 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 5461 bp

Genome contig ID gi65498774f_28591115
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
TATTGTAATAAAAAATAAATAATTTTTAAATCTTT
Flanking genome sequence
(139520 - 139569)
----+----*----+----*----+----*----+----*----+----*
TTAATTGTTTTCAAGTTGTCTTTTTTTAATCCTTGGTAGATGCAAAGGGA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1724 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1724	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..1218
Length: 406 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAC33214	1.8e-166	100.0	unnamed protein...	Mus musculus
Q80TA1	1.8e-166	100.0	Ethanolaminepho...	Mus musculus
NP_001128226	1.1e-160	95.9	selenoprotein I...	Rattus norvegicus
NP_001129035	2e-153	91.0	selenoprotein I...	Macaca mulatta
EAX00690	3.1e-153	91.2	selenoprotein I...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000462 113 300 PF01066 CDP-alcohol phosphatidyltransferase

ProfileScan IPR000462 114 148 PS50291 CDP-alcohol phosphatidyltransferase

ScanRegExp IPR000462 126 148 PS00379 CDP-alcohol phosphatidyltransferase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000462	113	300	PF01066	CDP-alcohol phosphatidyltransferase
ProfileScan	IPR000462	114	148	PS50291	CDP-alcohol phosphatidyltransferase
ScanRegExp	IPR000462	126	148	PS00379	CDP-alcohol phosphatidyltransferase

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 63 85 FPTWLAPNLITFSGFMLLVFNFL

104 126 VPDWVWIVVGILNFAAYTLDGVD

143 165 FDHGLDSWSCVYFVVTVYSIFGR

168 190 TGVSVFVLYLLLWVVLFSFILSH

200 222 FLPWGYDISQVTISFVYIVTAVV

241 262 FTAMIIGCALCVTLPMSLLNFF

276 298 YEAMVPFFSPCLLFTLCTVWILW

308 330 PRIFYFMVGTAFANITCQLIVCQ

337 359 PTLNWLLLPLLLVVAAVIVGAAT

363 385 ESALLYTLTAAFTLAHIHYGVQV

Method	From	To	amino acid sequence
SOSUI	63	85	FPTWLAPNLITFSGFMLLVFNFL
104	126	VPDWVWIVVGILNFAAYTLDGVD
143	165	FDHGLDSWSCVYFVVTVYSIFGR
168	190	TGVSVFVLYLLLWVVLFSFILSH
200	222	FLPWGYDISQVTISFVYIVTAVV
241	262	FTAMIIGCALCVTLPMSLLNFF
276	298	YEAMVPFFSPCLLFTLCTVWILW
308	330	PRIFYFMVGTAFANITCQLIVCQ
337	359	PTLNWLLLPLLLVVAAVIVGAAT
363	385	ESALLYTLTAAFTLAHIHYGVQV

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	5461 bp
Genome contig ID	gi65498774f_28591115
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- TATTGTAATAAAAAATAAATAATTTTTAAATCTTT
Flanking genome sequence (139520 - 139569)	----+--------+--------+--------+--------+----* TTAATTGTTTTCAAGTTGTCTTTTTTTAATCCTTGGTAGATGCAAAGGGA

Gene/Protein Characteristic Table for mKIAA1724

Features of the cloned DNA sequence

Features of the protein sequence