ROUGE

Gene/Protein Characteristic Table for mKIAA1624

Link to : HUGE \| InGAP \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129407
Description :
Clone Name :	mpm05262 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 3802 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 2208 bp

Genome contig ID gi66880554f_30984584
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
AATAAAGTGTGGTAGATAATTATTTCTTGGACAAC
Flanking genome sequence
(164128 - 164177)
----+----*----+----*----+----*----+----*----+----*
AAGAGCAAGTGTTCAACTCTGAATTCTGGCTCTAACAGGACTCAGCCTCT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1624 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1624	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2..1594
Length: 530 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAC40414	0	100.0	unnamed protein...	Mus musculus
Q8BUV8	0	99.8	Protein GPR107;...	Mus musculus
BAC28840	0	99.6	unnamed protein...	Mus musculus
BAC38445	0	99.6	unnamed protein...	Mus musculus
EDL93279	3.8e-212	93.2	G protein-coupl...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR009637 192 483 PF06814 Lung seven transmembrane receptor

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR009637	192	483	PF06814	Lung seven transmembrane receptor

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 1 23 ALLELLVHPVLGRVHHLALKDDV

242 262 KLYVSMALFFFLSGTIWIHIL

308 330 AVVYYITHLLKGALLFITIALIG

347 369 IFMIVIPLQVLANVAYIIIESTE

380 402 DSLFLVDLLCCGAILFPVVWSIR

427 449 YYVLIVCYIYFTRIIAFLLKFAV

454 475 KWLYQLLDETATLVFFVLTGYK

Method	From	To	amino acid sequence
SOSUI	1	23	ALLELLVHPVLGRVHHLALKDDV
242	262	KLYVSMALFFFLSGTIWIHIL
308	330	AVVYYITHLLKGALLFITIALIG
347	369	IFMIVIPLQVLANVAYIIIESTE
380	402	DSLFLVDLLCCGAILFPVVWSIR
427	449	YYVLIVCYIYFTRIIAFLLKFAV
454	475	KWLYQLLDETATLVFFVLTGYK

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	2208 bp
Genome contig ID	gi66880554f_30984584
PolyA signal sequence (None)	+--------+--------+----*----+---- AATAAAGTGTGGTAGATAATTATTTCTTGGACAAC
Flanking genome sequence (164128 - 164177)	----+--------+--------+--------+--------+----* AAGAGCAAGTGTTCAACTCTGAATTCTGGCTCTAACAGGACTCAGCCTCT

Gene/Protein Characteristic Table for mKIAA1624

Features of the cloned DNA sequence

Features of the protein sequence