ROUGE

Gene/Protein Characteristic Table for mKIAA1616

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK173218
Description :	MELASTATIN 2 homolog.
Clone Name :	mib26058 [Vector Info]
Source :	Mouse adult pancreatic islet

Features of the cloned DNA sequence	Description

Length: 6287 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1084 bp

Genome contig ID gi65553144f_21276974
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
TCCATACCGCTCATCATGTGACCATTTTGTATTTG
Flanking genome sequence
(950342 - 950391)
----+----*----+----*----+----*----+----*----+----*
AACACATGGTTATATGTGGATATTTTCATACCTAGAGTTTTAGCCATCTA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1616 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1616	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 47..5203
Length: 1718 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAD67495	100.0	transient recep...	Mus musculus
CAD67494	98.7	transient recep...	Mus musculus
XP_001140619	97.6	transient recep...	Pan troglodytes
NP_001007472	97.5	transient recep...	Homo sapiens
CAD43604	97.5	long transient ...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR005821 912 1123 PF00520 Ion transport protein

ProfileScan IPR002111 881 1127 PS50272 Cation (not K+) channel

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR005821	912	1123	PF00520	Ion transport protein
ProfileScan	IPR002111	881	1127	PS50272	Cation (not K+) channel

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 884 906 FWFYTLAYIGYLMLFNYIVLVKM

913 935 QEWIVISYIFTLGIEKMREILMS

951 973 YWNVTDLIAILLFSVGMILRLQD

980 1002 GRVIYCVNIIYWYIRLLDIFGVN

1013 1035 GKMMIDMMYFVIIMLVVLMSFGV

1104 1126 MACYLLVANILLVNLLIAVFNNT

Method	From	To	amino acid sequence
SOSUI	884	906	FWFYTLAYIGYLMLFNYIVLVKM
913	935	QEWIVISYIFTLGIEKMREILMS
951	973	YWNVTDLIAILLFSVGMILRLQD
980	1002	GRVIYCVNIIYWYIRLLDIFGVN
1013	1035	GKMMIDMMYFVIIMLVVLMSFGV
1104	1126	MACYLLVANILLVNLLIAVFNNT

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1084 bp
Genome contig ID	gi65553144f_21276974
PolyA signal sequence (None)	+--------+--------+----*----+---- TCCATACCGCTCATCATGTGACCATTTTGTATTTG
Flanking genome sequence (950342 - 950391)	----+--------+--------+--------+--------+----* AACACATGGTTATATGTGGATATTTTCATACCTAGAGTTTTAGCCATCTA

Gene/Protein Characteristic Table for mKIAA1616

Features of the cloned DNA sequence

Features of the protein sequence