ROUGE

Gene/Protein Characteristic Table for mKIAA1549

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129390
Description :
Clone Name :	mpm09216 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 4433 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1977 bp

Genome contig ID gi65504368r_38173810
PolyA signal sequence
(AATAAA,-13)
+----*----+----*----+----*----+----
TACATAAAATAAAATAAAATAAAATAAATCTTTAC
Flanking genome sequence
(99692 - 99643)
----+----*----+----*----+----*----+----*----+----*
AAAAGAAAAAAGAAAAAGAAAACAAAAACGCCAAAGTAAATATCTAACAA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1549 DNA sequence, AA sequence

KIAA	Alignment based on:
KIAA1549	DNA sequence, AA sequence

Features of the protein sequence	Description

Coding region: 3..2456
Length: 817 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAH79889	100.0	D630045J12Rik p...	Mus musculus
XP_979772	100.0	hypothetical pr...	Mus musculus
EDL13644	99.8	mCG121840 [Mus ...	Mus musculus
XP_991947	99.8	similar to D630...	Mus musculus
EDM15350	97.1	rCG28097 [Rattu...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ScanRegExp IPR000792 197 224 PS00622 Bacterial regulatory protein

Search method	interpro_ID	From	To	Entry	Definition
ScanRegExp	IPR000792	197	224	PS00622	Bacterial regulatory protein

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 5 27 PDVYLITTVLARRAVQEYIITSI

352 374 WVVVGVVIPVLVVTVIVVILYWK

Method	From	To	amino acid sequence
SOSUI	5	27	PDVYLITTVLARRAVQEYIITSI
352	374	WVVVGVVIPVLVVTVIVVILYWK

How to obtain mKIAA clone(s) How to obtain anti mKIAA antibodies Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1977 bp
Genome contig ID	gi65504368r_38173810
PolyA signal sequence (AATAAA,-13)	+--------+--------+----*----+---- TACATAAAATAAAATAAAATAAAATAAATCTTTAC
Flanking genome sequence (99692 - 99643)	----+--------+--------+--------+--------+----* AAAAGAAAAAAGAAAAAGAAAACAAAAACGCCAAAGTAAATATCTAACAA

Gene/Protein Characteristic Table for mKIAA1549

Features of the cloned DNA sequence

Features of the protein sequence