ROUGE

Gene/Protein Characteristic Table for mKIAA1422

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129355
Description :
Clone Name :	mbg14480 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 4161 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 963 bp

Genome contig ID gi66880554f_25724497
PolyA signal sequence
(ATTAAA,-21)
+----*----+----*----+----*----+----
AACTGGAACCTTCTATTAAAATGGATACATCCTGC
Flanking genome sequence
(124748 - 124797)
----+----*----+----*----+----*----+----*----+----*
AGGCATGCATGGAACAAGGCAGCCCACCATAGCTCTGGAATGGTGGTGGT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1422 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1422	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..3198
Length: 1065 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
ACM90117	100.0	sodium-activate...	Mus musculus
Q6ZPR4	100.0	Potassium chann...	Mus musculus
CAM14274	100.0	potassium chann...	Mus musculus
CAM14275	99.8	potassium chann...	Mus musculus
EDL93532	98.8	potassium chann...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam NULL 85 163 PF07885 NULL

IPR003929 302 423 PF03493 Calcium-activated BK potassium channel

ProfileScan IPR001622 104 161 PS50265 K+ channel

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	NULL	85	163	PF07885	NULL
IPR003929	302	423	PF03493	Calcium-activated BK potassium channel
ProfileScan	IPR001622	104	161	PS50265	K+ channel

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 9 31 GNIWEQIFHVSFVLEMINTLPFI

74 96 AMFNQVLILFCTLLCLVFTGTCG

103 125 AGGNLNLLTSFYFCIVTFSTVGF

133 155 WPSQLLVVILICVTLVVLPLQFE

Method	From	To	amino acid sequence
SOSUI	9	31	GNIWEQIFHVSFVLEMINTLPFI
74	96	AMFNQVLILFCTLLCLVFTGTCG
103	125	AGGNLNLLTSFYFCIVTFSTVGF
133	155	WPSQLLVVILICVTLVVLPLQFE

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	963 bp
Genome contig ID	gi66880554f_25724497
PolyA signal sequence (ATTAAA,-21)	+--------+--------+----*----+---- AACTGGAACCTTCTATTAAAATGGATACATCCTGC
Flanking genome sequence (124748 - 124797)	----+--------+--------+--------+--------+----* AGGCATGCATGGAACAAGGCAGCCCACCATAGCTCTGGAATGGTGGTGGT

Gene/Protein Characteristic Table for mKIAA1422

Features of the cloned DNA sequence

Features of the protein sequence