ROUGE

Gene/Protein Characteristic Table for mKIAA1174

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK173121
Description :	lipocalin-interacting membrane receptor.
Clone Name :	mng09212 [Vector Info]
Source :	Mouse NKT cells

Features of the cloned DNA sequence	Description

Length: 2553 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 525 bp

Genome contig ID gi65543215r_98861885
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ATTGATCCCAGGGTTTTCTTGGTTCTTTTGTAAAG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGCTTGTCCCTGTGTCTATCTGAGTTCCTTGTTCCAACCAGTCCTGAGCC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1174 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1174	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 625..2028
Length: 467 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q9D1E5	8.4e-190	100.0	Protein LMBR1L;...	Mus musculus
EDL04155	8.8e-190	100.0	limb region 1 l...	Mus musculus
BAE41722	2.2e-186	99.3	unnamed protein...	Mus musculus
Q4R7X9	3.2e-184	96.1	Protein LMBR1L.	Macaca fascicularis
XP_001106104	7.9e-184	95.9	similar to lipo...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR006876 3 429 PF04791 LMBR1-like conserved region

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR006876	3	429	PF04791	LMBR1-like conserved region

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 1 21 SWISILLFATLYILCHIFLTR

45 67 LCTFTLAVALGAVLLLPFSIISN

89 111 GLWNLVFLFSNLSLVFLMPFAYF

132 154 TVVMLILLTLLVLGMVWVASAIV

178 200 CISFLGVLLLLVCTPLGLARMFS

281 303 MLCLLVLTGLSVLIVAVHILELL

329 351 FGAIIQVVLIFYLMVSSVVGFYS

371 393 IGNCVCLLVLSSALPVFSRTLGL

415 437 FLYNAAFAGLTTLCLVKTFTAAV

Method	From	To	amino acid sequence
SOSUI	1	21	SWISILLFATLYILCHIFLTR
45	67	LCTFTLAVALGAVLLLPFSIISN
89	111	GLWNLVFLFSNLSLVFLMPFAYF
132	154	TVVMLILLTLLVLGMVWVASAIV
178	200	CISFLGVLLLLVCTPLGLARMFS
281	303	MLCLLVLTGLSVLIVAVHILELL
329	351	FGAIIQVVLIFYLMVSSVVGFYS
371	393	IGNCVCLLVLSSALPVFSRTLGL
415	437	FLYNAAFAGLTTLCLVKTFTAAV

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	525 bp
Genome contig ID	gi65543215r_98861885
PolyA signal sequence (None)	+--------+--------+----*----+---- ATTGATCCCAGGGTTTTCTTGGTTCTTTTGTAAAG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AGCTTGTCCCTGTGTCTATCTGAGTTCCTTGTTCCAACCAGTCCTGAGCC

Gene/Protein Characteristic Table for mKIAA1174

Features of the cloned DNA sequence

Features of the protein sequence