ROUGE

Gene/Protein Characteristic Table for mKIAA1029

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129267
Description :	Synaptopodin.
Clone Name :	mbg20987 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 4364 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1871 bp

Genome contig ID gi65551972r_60725539
PolyA signal sequence
(AATACA,-15)
+----*----+----*----+----*----+----
TGGTCCTGCCTCCCGTTCTCAATACACTCTGTCTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAATCTGTCTTGCTTCTTTCTTCTGCGCTGTTGCTGCCACGGGCTGGGGC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1029 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1029	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..2493
Length: 830 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAE34731	0	100.0	unnamed protein...	Mus musculus
Q8CC35	0	100.0	Synaptopodin.	Mus musculus
Q9Z327	0	93.8	Synaptopodin.	Rattus norvegicus
BAE24737	5e-206	100.0	unnamed protein...	Mus musculus
BAE32953	2.2e-202	100.0	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Method	From	To	amino acid sequence
-	-	-	-

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1871 bp
Genome contig ID	gi65551972r_60725539
PolyA signal sequence (AATACA,-15)	+--------+--------+----*----+---- TGGTCCTGCCTCCCGTTCTCAATACACTCTGTCTC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAATCTGTCTTGCTTCTTTCTTCTGCGCTGTTGCTGCCACGGGCTGGGGC

Gene/Protein Characteristic Table for mKIAA1029

Features of the cloned DNA sequence

Features of the protein sequence